CmoCh06G013910 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G013910
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S3a
Location	Cmo_Chr06: 10203006 .. 10205324 (+)
RNA-Seq Expression	CmoCh06G013910
Synteny	CmoCh06G013910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCTCTCAAACTCTCTCTGCCGTGCAGCATAACATCCGCAGAGTTAGGGCAACTCTCCTCCTCCACCCATGGCCGTCGGGTACCTTTTCTTTCTTTCCGATTGTTTCAATTGTATGCTGCATTGTGTTTTTATCTCTCATACTTGTTTTCTTTTCAATCAGTAAGAACAAGCGGATTTCGAAGGGAAAGAAGGGAGGCAAGAAGAAAGCGTGAGTATATATATTTTTTTTATATTCCTTTGTTTTTCAGATCTTAGTGTTGGTTTTGGAGTACTTTATATATCTGTTGTATGCTCGTCCTTCAGCACCGATCCATTTGCCAAGAAGGATTGGTATGATATCAAAGCACCTTCAGTTTTCACTGTTAAGAATGTTGGAAAGACTCTTGTTACGCGTACGCAGGGTACCAAGGTAAATCGATCCTTTTCTGCTTGCTTTTACGTTTATATTTGAATTTTATCTGGAAAAAGGGGGTATAGTGTAAGAGAATTTCAATGGTGTTTGTGTGGTCTTAGAGGCATTGTTTTTTAAATGGGTTTTGGTGTCATTGTTGAACTCGATTGATGCAAGATTTTTCTTTTTCTCCTTGTTTATAATTTTGTATTGATGCTGGATGGAGATATTTGGATTCTTAGAACAAAAGATTGGATTTTATGTTTTCTAGATGTTGTGGAATGCCGTTTGTAACCTGGCTTACTTCTTTGGAGTTTTGGAAGTTATCTGATGTAGATTTAAGACCTATAAAATGGAACCGATGACCATTGCATTACAAAAGCGATTCTTTAATCTTTGGGTTAAGCGTGATCACATAACAAAAATGTCACGAGTAGTAGTTTACTTAATTACTGGGATCTTAGCTATTCCTAATTCATATGAATATAAAATCTAATTTAGTTTCAAATAAATATTGAATATTGGAAAATATCAATTATAGAACATAATAATTAATATAAAAAAGTAATAGAATATGGCTATGAAACACTTTCTTCTATTTATCAAATGGTTGTATCAATAGTTAATTTTGCAAATAATGTAAATATTAAATTTCCTTGGCTTCTCCCAATAGATTGCTTCTGAAGGACTCAAACACAGAGTCTTCGAGGTCTCTTTGGCTGATCTTCAGGATGATGAGGAGCACGCTTACAGGAAGATTCGACTGAGAGCAGAAGATGTTCAAGGGAGGAATGTCCTAACAAATTTCTGGGTGCGATAGGACATTCCACTTAGTTGTATTCACATGGTATTTTGTTGATTGCGTTTTGATCTTATTTCTTTCTTGTGAAAATGTTCAGGGAATGAATTTCACTACTGACAAGTTAAGGTCTTTAGTACGCAAATGGCACACTTTGATTGAAGCTCATGTTGATGTCAAAACCACTGACAACTACACTCTTAGAATGTTTTGCATTGGGTTCACTAAGAGAAGGCCAAACCAAGTGAAAAGGACATGCTACGCCCAATCCAGCCAGATCAGGCAGGTTAGTTCAGGACTGGAGTGAAGTATTTTTATCGTAAAACTTGTCTTTTGCTTATGGTAATTCATTTGTCACTAAATTTTCTCTGAATTGATGCCGACATCCTTTTTACATGTCAGATCCGTCGTAAGATGAGAGAGATCATGGTAAACCAAGCAACCTCTTGTGATTTGAAGGAACTGGTTCGCAAGTTCATTCCAGAGTTCATCGGCAAGGAGATTGAAAAGGCAACATCCAGCATCTACCCTCTTCAAAATGTGTTTATCCGGAAAGTAAAAATTTTGAAAGCACCTAAATTCGACCTTGGAAAGTTGATGGAGGTATATATATGGTTTATTCTCATTCTCTCTTAATGTTTTGAACTTGATCCGTAGCCTATGAAATTATAATATTATTTCAGAGTCTTATCACTGCCATGATCTGTGTTTATAGGTTCATGGAGACTACTCAGAAGACGTTGGCGTGAAGGTCGAGAGACCTGCTGATGAAGCTGCAGATGAGGGGCCAACCGAAATTGTTGGAGCTTAAGTTCAGTTATGTTGAATTTCATTTGATCTGTTTTTGTTTAGTTTTGCCCCGCTTTGTCACAAACTTAGTTTTAACCCACTTCTCGATCTAGTCAGAGAGTTGGTTTTGAGGATCGCAATTTTGTGCTACCAAATCCTTAGTTAAGATTACTTTCATTGAATCAATTTAGCAAATTGCACCGTTTTTTTCACTCTACATGTTTTTAGATCTTAAATGAAGAATTTCGTGGGGATGGAAAATGAAAAAGGGTAGAGATGGGGATGAAAAGACTTCTCGTTACACAATACATTGATCGACTGGGTAATTGTAGAACGGA

mRNA sequence

AGCCTCTCAAACTCTCTCTGCCGTGCAGCATAACATCCGCAGAGTTAGGGCAACTCTCCTCCTCCACCCATGGCCGTCGGTAAGAACAAGCGGATTTCGAAGGGAAAGAAGGGAGGCAAGAAGAAAGCCACCGATCCATTTGCCAAGAAGGATTGGTATGATATCAAAGCACCTTCAGTTTTCACTGTTAAGAATGTTGGAAAGACTCTTGTTACGCGTACGCAGGGTACCAAGATTGCTTCTGAAGGACTCAAACACAGAGTCTTCGAGGTCTCTTTGGCTGATCTTCAGGATGATGAGGAGCACGCTTACAGGAAGATTCGACTGAGAGCAGAAGATGTTCAAGGGAGGAATGTCCTAACAAATTTCTGGGGAATGAATTTCACTACTGACAAGTTAAGGTCTTTAGTACGCAAATGGCACACTTTGATTGAAGCTCATGTTGATGTCAAAACCACTGACAACTACACTCTTAGAATGTTTTGCATTGGGTTCACTAAGAGAAGGCCAAACCAAGTGAAAAGGACATGCTACGCCCAATCCAGCCAGATCAGGCAGATCCGTCGTAAGATGAGAGAGATCATGGTAAACCAAGCAACCTCTTGTGATTTGAAGGAACTGGTTCGCAAGTTCATTCCAGAGTTCATCGGCAAGGAGATTGAAAAGGCAACATCCAGCATCTACCCTCTTCAAAATGTGTTTATCCGGAAAGTAAAAATTTTGAAAGCACCTAAATTCGACCTTGGAAAGTTGATGGAGGTTCATGGAGACTACTCAGAAGACGTTGGCGTGAAGGTCGAGAGACCTGCTGATGAAGCTGCAGATGAGGGGCCAACCGAAATTGTTGGAGCTTAAGTTCAGTTATGTTGAATTTCATTTGATCTGTTTTTGTTTAGTTTTGCCCCGCTTTGTCACAAACTTAGTTTTAACCCACTTCTCGATCTAGTCAGAGAGTTGGTTTTGAGGATCGCAATTTTGTGCTACCAAATCCTTAGTTAAGATTACTTTCATTGAATCAATTTAGCAAATTGCACCGTTTTTTTCACTCTACATGTTTTTAGATCTTAAATGAAGAATTTCGTGGGGATGGAAAATGAAAAAGGGTAGAGATGGGGATGAAAAGACTTCTCGTTACACAATACATTGATCGACTGGGTAATTGTAGAACGGA

Coding sequence (CDS)

ATGGCCGTCGGTAAGAACAAGCGGATTTCGAAGGGAAAGAAGGGAGGCAAGAAGAAAGCCACCGATCCATTTGCCAAGAAGGATTGGTATGATATCAAAGCACCTTCAGTTTTCACTGTTAAGAATGTTGGAAAGACTCTTGTTACGCGTACGCAGGGTACCAAGATTGCTTCTGAAGGACTCAAACACAGAGTCTTCGAGGTCTCTTTGGCTGATCTTCAGGATGATGAGGAGCACGCTTACAGGAAGATTCGACTGAGAGCAGAAGATGTTCAAGGGAGGAATGTCCTAACAAATTTCTGGGGAATGAATTTCACTACTGACAAGTTAAGGTCTTTAGTACGCAAATGGCACACTTTGATTGAAGCTCATGTTGATGTCAAAACCACTGACAACTACACTCTTAGAATGTTTTGCATTGGGTTCACTAAGAGAAGGCCAAACCAAGTGAAAAGGACATGCTACGCCCAATCCAGCCAGATCAGGCAGATCCGTCGTAAGATGAGAGAGATCATGGTAAACCAAGCAACCTCTTGTGATTTGAAGGAACTGGTTCGCAAGTTCATTCCAGAGTTCATCGGCAAGGAGATTGAAAAGGCAACATCCAGCATCTACCCTCTTCAAAATGTGTTTATCCGGAAAGTAAAAATTTTGAAAGCACCTAAATTCGACCTTGGAAAGTTGATGGAGGTTCATGGAGACTACTCAGAAGACGTTGGCGTGAAGGTCGAGAGACCTGCTGATGAAGCTGCAGATGAGGGGCCAACCGAAATTGTTGGAGCTTAA

Protein sequence

MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVERPADEAADEGPTEIVGA

Homology

[Close]

BLAST of CmoCh06G013910 vs. ExPASy Swiss-Prot
Match: Q8GTE3 (40S ribosomal protein S3a OS=Cicer arietinum OX=3827 PE=2 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 3.1e-131
Identity = 238/261 (91.19%), Postives = 248/261 (95.02%), Query Frame = 0


Query: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKA DPF+KKDWYDIKAPSVF VKNVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120
           LKHRVFE+SLADLQ DE++A+RKIRLRAEDVQG+NVLTNF+GM+FTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180
           IEAHVDVKTTDNYTLRMFCIGFTKRR NQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180

Query: 181 LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LKELVRKFIPE IGKEIEKATSSIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKVERPADEAADEGPTEIVGA 262
            KVE PADE   EG  EIVGA
Sbjct: 241 TKVESPADETVVEGTPEIVGA 261

[Close]

BLAST of CmoCh06G013910 vs. ExPASy Swiss-Prot
Match: A5B4K1 (40S ribosomal protein S3a-1 OS=Vitis vinifera OX=29760 GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 6.5e-129
Identity = 231/261 (88.51%), Postives = 245/261 (93.87%), Query Frame = 0


Query: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKA DPFAKKDWYDIKAPSVF V+NVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120
           LKHRVFE+SLADLQ DE+ AYRKIRLRAEDVQGRNVLTNFWGM+FTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180
           IEAHVDVKTTDNYTLR+FCI FTK+R NQ K+TCYAQSSQIRQIRRKMREIM N ATSCD
Sbjct: 121 IEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCD 180

Query: 181 LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LKELV+KFIPE IG+EIEKATSSIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKVERPADEAADEGPTEIVGA 262
            K+ERPADE   EG TE++GA
Sbjct: 241 TKLERPADEPVAEGVTEVIGA 261

[Close]

BLAST of CmoCh06G013910 vs. ExPASy Swiss-Prot
Match: P49198 (40S ribosomal protein S3a OS=Helianthus annuus OX=4232 GN=RPS3A PE=2 SV=2)

HSP 1 Score: 455.3 bits (1170), Expect = 4.7e-127
Identity = 227/261 (86.97%), Postives = 249/261 (95.40%), Query Frame = 0


Query: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKA DPF+KKDWYDIKAPS+F  +NVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSLFITRNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120
           LKHRVFEVSLADLQ+DE+H+YRKIRLRAEDVQG+NVLTNFWGM+ TTDKLRSLV+KW +L
Sbjct: 61  LKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSL 120

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180
           IEAHVDVKTTDN+TLRMFCIGFTK+R NQVKRTCYAQSSQI+QIRRKMREIMV QA +CD
Sbjct: 121 IEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCD 180

Query: 181 LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LKELV+KFIPE IG+EIEKATSSIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVG
Sbjct: 181 LKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVG 240

Query: 241 VKVERPADEAADEGPTEIVGA 262
           VK++RPA+EAA E  TE++GA
Sbjct: 241 VKLDRPAEEAAPEA-TEVIGA 260

[Close]

BLAST of CmoCh06G013910 vs. ExPASy Swiss-Prot
Match: P33444 (40S ribosomal protein S3a OS=Catharanthus roseus OX=4058 GN=RPS3A PE=2 SV=4)

HSP 1 Score: 453.8 bits (1166), Expect = 1.4e-126
Identity = 227/262 (86.64%), Postives = 250/262 (95.42%), Query Frame = 0


Query: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKA DPFAKKDWYDIKAPSVF+V+NVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120
           L+HRVFE+SLADLQ DE+H++RKIRLRAED+QG+NVLTNFWGM+FTTDKLRSLVRKW +L
Sbjct: 61  LEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSL 120

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180
           IEAHVDVKTTD+YTLRMFCIGFTK+R NQ KRTCYAQSSQIRQIRRKMREIMVNQA SCD
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCD 180

Query: 181 LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DV 240
           LK+LV+KFIPE IG+EIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E D+
Sbjct: 181 LKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDI 240

Query: 241 GVKVERPADEAADEGPTEIVGA 262
           G K++RPA+EA  E PTE++GA
Sbjct: 241 GTKLDRPAEEAVAE-PTEVIGA 261

[Close]

BLAST of CmoCh06G013910 vs. ExPASy Swiss-Prot
Match: Q9MBB3 (40S ribosomal protein S3a OS=Daucus carota OX=4039 GN=cyc07 PE=2 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 1.2e-125
Identity = 229/261 (87.74%), Postives = 244/261 (93.49%), Query Frame = 0


Query: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAP+VF  KNVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120
           LKHRVFEV LADLQ DE+ AYRKIRLRAEDVQG+NVLTNF+GM+FTTDKLRSLVRKW TL
Sbjct: 61  LKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTL 120

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180
           IEAHVDVKTTD+YTLRMFCIGFTK+R NQ KRTCYAQSSQIRQIRRKM EIM NQA+SCD
Sbjct: 121 IEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCD 180

Query: 181 LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LKELV KFIPE IG+EIEKATSSI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVG
Sbjct: 181 LKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVG 240

Query: 241 VKVERPADEAADEGPTEIVGA 262
           VK+ERP +E   EG TE+VGA
Sbjct: 241 VKLERPIEETMVEGETEVVGA 261

[Close]

BLAST of CmoCh06G013910 vs. ExPASy TrEMBL
Match: A0A6J1G8R6 (40S ribosomal protein S3a OS=Cucurbita moschata OX=3662 GN=LOC111451931 PE=3 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 6.3e-143
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0


Query: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120
           LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL
Sbjct: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180
           IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180

Query: 181 LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKVERPADEAADEGPTEIVGA 262
           VKVERPADEAADEGPTEIVGA
Sbjct: 241 VKVERPADEAADEGPTEIVGA 261

[Close]

BLAST of CmoCh06G013910 vs. ExPASy TrEMBL
Match: A0A6J1IG66 (40S ribosomal protein S3a OS=Cucurbita maxima OX=3661 GN=LOC111473093 PE=3 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 5.3e-142
Identity = 260/261 (99.62%), Postives = 260/261 (99.62%), Query Frame = 0


Query: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120
           LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL
Sbjct: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180
           IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180

Query: 181 LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LKELVRKFIPE IGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKVERPADEAADEGPTEIVGA 262
           VKVERPADEAADEGPTEIVGA
Sbjct: 241 VKVERPADEAADEGPTEIVGA 261

[Close]

BLAST of CmoCh06G013910 vs. ExPASy TrEMBL
Match: A0A1S3AXI4 (40S ribosomal protein S3a OS=Cucumis melo OX=3656 GN=LOC103483683 PE=3 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 7.2e-139
Identity = 254/261 (97.32%), Postives = 258/261 (98.85%), Query Frame = 0


Query: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120
           LKHRVFE+SLADLQ+DEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL
Sbjct: 61  LKHRVFEISLADLQEDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180
           IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQA+SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCD 180

Query: 181 LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LKELVRKFIPE IGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKVERPADEAADEGPTEIVGA 262
           VKVERPADEAA EG TE+VGA
Sbjct: 241 VKVERPADEAAVEGATEVVGA 261

[Close]

BLAST of CmoCh06G013910 vs. ExPASy TrEMBL
Match: A0A6J1IW45 (40S ribosomal protein S3a OS=Cucurbita maxima OX=3661 GN=LOC111479024 PE=3 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 1.2e-138
Identity = 255/261 (97.70%), Postives = 257/261 (98.47%), Query Frame = 0


Query: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120
           LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL
Sbjct: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180
           IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQA+SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCD 180

Query: 181 LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LKELVRKFIPE IGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKVERPADEAADEGPTEIVGA 262
           VKVERPADEAA E  TE+VGA
Sbjct: 241 VKVERPADEAAAEEATEVVGA 261

[Close]

BLAST of CmoCh06G013910 vs. ExPASy TrEMBL
Match: A0A5D3CZ21 (40S ribosomal protein S3a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00720 PE=3 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.1e-138
Identity = 253/261 (96.93%), Postives = 257/261 (98.47%), Query Frame = 0


Query: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60

Query: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120
           LKHRVFE+SLADLQ+DEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL
Sbjct: 61  LKHRVFEISLADLQEDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180
           IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQA+SCD
Sbjct: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCD 180

Query: 181 LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240
           LKELVRKFIPE IGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG
Sbjct: 181 LKELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 240

Query: 241 VKVERPADEAADEGPTEIVGA 262
           VKVERPADE A EG TE+VGA
Sbjct: 241 VKVERPADETAVEGATEVVGA 261

[Close]

BLAST of CmoCh06G013910 vs. TAIR 10
Match: AT3G04840.1 (Ribosomal protein S3Ae )

HSP 1 Score: 447.6 bits (1150), Expect = 6.9e-126
Identity = 225/262 (85.88%), Postives = 245/262 (93.51%), Query Frame = 0


Query: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKG+KGGKKKA DPF+KKDWYD+KAPS+FT +NVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120
           LKHRVFEVSLADLQ DE++AYRKIRLRAEDVQGRNVL  FWGM+FTTDKLRSLV+KW TL
Sbjct: 61  LKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTL 120

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180
           IEAHVDVKTTD+YTLR+FCI FTKRR NQVKRTCYAQSSQIRQIRRKMR+IMV +A+SCD
Sbjct: 121 IEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCD 180

Query: 181 LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDV 240
           LK+LV KFIPE IG+EIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS EDV
Sbjct: 181 LKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDV 240

Query: 241 GVKVERPADEAADEGPTEIVGA 262
           GVKV+RPADE A E PTEI+GA
Sbjct: 241 GVKVDRPADEMAVEEPTEIIGA 262

[Close]

BLAST of CmoCh06G013910 vs. TAIR 10
Match: AT4G34670.1 (Ribosomal protein S3Ae )

HSP 1 Score: 446.4 bits (1147), Expect = 1.5e-125
Identity = 226/262 (86.26%), Postives = 242/262 (92.37%), Query Frame = 0


Query: 1   MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEG 60
           MAVGKNKRISKG+KGGKKKA DPF+KKDWYD+KAP  FT +NVGKTLV+RTQGTKIASEG
Sbjct: 1   MAVGKNKRISKGRKGGKKKAVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEG 60

Query: 61  LKHRVFEVSLADLQDDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTL 120
           LKHRVFEVSLADLQ+DE++AYRKIRLRAEDVQGRNVLT FWGM+FTTDKLRSLV+KW TL
Sbjct: 61  LKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTL 120

Query: 121 IEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCD 180
           IEAHVDVKTTD YTLRMFCI FTKRR NQVKRTCYAQSSQIRQIRRKM EIMV +A+SCD
Sbjct: 121 IEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCD 180

Query: 181 LKELVRKFIPEFIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDV 240
           LKELV KFIPE IG+EIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +EDV
Sbjct: 181 LKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDV 240

Query: 241 GVKVERPADEAADEGPTEIVGA 262
           GVKV+RPADE   E PTEI+GA
Sbjct: 241 GVKVDRPADETMVEEPTEIIGA 262

The following BLAST results are available for this feature:

BLAST of CmoCh06G013910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GTE3	3.1e-131	91.19	40S ribosomal protein S3a OS=Cicer arietinum OX=3827 PE=2 SV=1	[more]
A5B4K1	6.5e-129	88.51	40S ribosomal protein S3a-1 OS=Vitis vinifera OX=29760 GN=GSVIVT00020038001 PE=3...	[more]
P49198	4.7e-127	86.97	40S ribosomal protein S3a OS=Helianthus annuus OX=4232 GN=RPS3A PE=2 SV=2	[more]
P33444	1.4e-126	86.64	40S ribosomal protein S3a OS=Catharanthus roseus OX=4058 GN=RPS3A PE=2 SV=4	[more]
Q9MBB3	1.2e-125	87.74	40S ribosomal protein S3a OS=Daucus carota OX=4039 GN=cyc07 PE=2 SV=1	[more]

BLAST of CmoCh06G013910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G8R6	6.3e-143	100.00	40S ribosomal protein S3a OS=Cucurbita moschata OX=3662 GN=LOC111451931 PE=3 SV=...	[more]
A0A6J1IG66	5.3e-142	99.62	40S ribosomal protein S3a OS=Cucurbita maxima OX=3661 GN=LOC111473093 PE=3 SV=1	[more]
A0A1S3AXI4	7.2e-139	97.32	40S ribosomal protein S3a OS=Cucumis melo OX=3656 GN=LOC103483683 PE=3 SV=1	[more]
A0A6J1IW45	1.2e-138	97.70	40S ribosomal protein S3a OS=Cucurbita maxima OX=3661 GN=LOC111479024 PE=3 SV=1	[more]
A0A5D3CZ21	2.1e-138	96.93	40S ribosomal protein S3a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of CmoCh06G013910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04840.1	6.9e-126	85.88	Ribosomal protein S3Ae	[more]
AT4G34670.1	1.5e-125	86.26	Ribosomal protein S3Ae	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001593	Ribosomal protein S3Ae	SMART	SM01397	Ribosomal_S3Ae_2	coord: 15..221 e-value: 5.4E-139 score: 477.7
IPR001593	Ribosomal protein S3Ae	PFAM	PF01015	Ribosomal_S3Ae	coord: 16..221 e-value: 5.5E-83 score: 277.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR11830:SF33	40S RIBOSOMAL PROTEIN S3A	coord: 1..260
None	No IPR available	PANTHER	PTHR11830	40S RIBOSOMAL PROTEIN S3A	coord: 1..260
IPR018281	Ribosomal protein S3Ae, conserved site	PROSITE	PS01191	RIBOSOMAL_S3AE	coord: 61..73
IPR027500	40S ribosomal protein S1/3, eukaryotes	HAMAP	MF_03122	Ribosomal_S3Ae_euk	coord: 1..258 score: 40.597698

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G013910.1	CmoCh06G013910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome