CmoCh06G013820 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G013820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionearly light-induced protein 1, chloroplastic-like
LocationCmo_Chr06: 10156602 .. 10157682 (+)
RNA-Seq ExpressionCmoCh06G013820
SyntenyCmoCh06G013820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCATCTACATCATCATAGAAGCGCTCCACCGCCAATACGATAATTTCCATCGCTCTTTGATCGATTACTGCCCTTAGTCTCCGCCGTTCCTTTGCTCCGTTGACATTGAACCCCCAGGAACTGAGCGAAATGGCCACTTCTGCATTATTACAAGCCATTCCGGCGAGATCGGCATCTCGAACTACCCTTAGGACACCAACGAACCGGTTGTGTTCCAGGAGGACGGCCTCCTTCCGTGTGCGATGCACGGCGGAGGTAATCATTATTTTGTCTTCACTTTTATTCTTTGTATATACAACCTAGGGCTTAATGTATGTCTAAATCTGTTTATTCGACTGGACTCTCAGGAGGAGCAGAGAGAGCAAGCGATTCCTACACCAGCTCCGCCGACGTCAAATCCGTCCCCTCCGCCACCGTCTCCGAAGCCGAAGGTAAACAATCCGTTTACATCCACCAGCCGTTCTCAATCGACGGATCGAACCGTAACAGATCGTAGATGAACATTGTCTTTAAATATCATCGTTAATTTCGAATCTGATAATATGATCCTCAGGTGAGCACGAAATTCTCGGACGTCCTCGCATTCAGCGGGCCAGCGCCAGAGAGAATCAACGGGCGGCTAGCAATGATAGGCTTTGTGGCCGCTGTAGCGGTTGAGGCATGGAAAGGTCAGGATGTATTGGAGCAAATAGGCAACGGAGGAATTCCATGGTTTGTGGGAACGAGCGTGGTTTTGACACTGGCATCGCTGATTCCGCTATTTAAAGGGGTGAGTGTGGAGTCTAAGTCGAAGGGGCTTATGACATCCGACGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGGCTCGTAGCTTTGGCCTTCACTGAATTTGTCAAGGGTGGAAGCCTCGTGTAGATTGTAGTTCTGAGATGTAGATTCGATGTCTCTAAGAGAACAACGAATATGTTACTTAATAGTTTTCTGTAACAATGATTATTAGTAATACTTCTTCGTTTGCCTATATGTTATTTTTTGTGTTTCTAATTAATTATGTGTACCAATAGCTATTAGTGCACTAATTAACATTTAATTTGAAC

mRNA sequence

CTCATCTACATCATCATAGAAGCGCTCCACCGCCAATACGATAATTTCCATCGCTCTTTGATCGATTACTGCCCTTAGTCTCCGCCGTTCCTTTGCTCCGTTGACATTGAACCCCCAGGAACTGAGCGAAATGGCCACTTCTGCATTATTACAAGCCATTCCGGCGAGATCGGCATCTCGAACTACCCTTAGGACACCAACGAACCGGTTGTGTTCCAGGAGGACGGCCTCCTTCCGTGTGCGATGCACGGCGGAGGAGGAGCAGAGAGAGCAAGCGATTCCTACACCAGCTCCGCCGACGTCAAATCCGTCCCCTCCGCCACCGTCTCCGAAGCCGAAGGTAAACAATCCGTTTACATCCACCAGCCGTTCTCAATCGACGGATCGAACCGTGAGCACGAAATTCTCGGACGTCCTCGCATTCAGCGGGCCAGCGCCAGAGAGAATCAACGGGCGGCTAGCAATGATAGGCTTTGTGGCCGCTGTAGCGGTTGAGGCATGGAAAGGTCAGGATGTATTGGAGCAAATAGGCAACGGAGGAATTCCATGGTTTGTGGGAACGAGCGTGGTTTTGACACTGGCATCGCTGATTCCGCTATTTAAAGGGGTGAGTGTGGAGTCTAAGTCGAAGGGGCTTATGACATCCGACGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGGCTCGTAGCTTTGGCCTTCACTGAATTTGTCAAGGGTGGAAGCCTCGTGTAGATTGTAGTTCTGAGATGTAGATTCGATGTCTCTAAGAGAACAACGAATATGTTACTTAATAGTTTTCTGTAACAATGATTATTAGTAATACTTCTTCGTTTGCCTATATGTTATTTTTTGTGTTTCTAATTAATTATGTGTACCAATAGCTATTAGTGCACTAATTAACATTTAATTTGAAC

Coding sequence (CDS)

ATGGCCACTTCTGCATTATTACAAGCCATTCCGGCGAGATCGGCATCTCGAACTACCCTTAGGACACCAACGAACCGGTTGTGTTCCAGGAGGACGGCCTCCTTCCGTGTGCGATGCACGGCGGAGGAGGAGCAGAGAGAGCAAGCGATTCCTACACCAGCTCCGCCGACGTCAAATCCGTCCCCTCCGCCACCGTCTCCGAAGCCGAAGGTAAACAATCCGTTTACATCCACCAGCCGTTCTCAATCGACGGATCGAACCGTGAGCACGAAATTCTCGGACGTCCTCGCATTCAGCGGGCCAGCGCCAGAGAGAATCAACGGGCGGCTAGCAATGATAGGCTTTGTGGCCGCTGTAGCGGTTGAGGCATGGAAAGGTCAGGATGTATTGGAGCAAATAGGCAACGGAGGAATTCCATGGTTTGTGGGAACGAGCGTGGTTTTGACACTGGCATCGCTGATTCCGCTATTTAAAGGGGTGAGTGTGGAGTCTAAGTCGAAGGGGCTTATGACATCCGACGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGGCTCGTAGCTTTGGCCTTCACTGAATTTGTCAAGGGTGGAAGCCTCGTGTAG

Protein sequence

MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNPSPPPPSPKPKVNNPFTSTSRSQSTDRTVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV
Homology
BLAST of CmoCh06G013820 vs. ExPASy Swiss-Prot
Match: P93735 (Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP1 PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.9e-49
Identity = 115/192 (59.90%), Postives = 136/192 (70.83%), Query Frame = 0

Query: 18  TTLRTPTNRLCS-------RRTASFRVRCTAE-EEQREQAIPTPAPPTSNPSPPPPSPKP 77
           TT +  TN+L S       +R     VRC AE     E + P P+   + P P  PSP P
Sbjct: 17  TTRKINTNKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSPAPSTSAAQPLPKSPSPPP 76

Query: 78  KVNNPFTSTSRSQSTDRTVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDV 137
            +                VSTKFSD+LAFSGPAPERINGRLAM+GFVAA+AVE  KG++V
Sbjct: 77  PMK-------------PKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGENV 136

Query: 138 LEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVAL 197
           L QI +GG+ WF+GT+ +LTLASL+PLFKG+SVESKSKG+MTSDAELWNGRFAMLGLVAL
Sbjct: 137 LAQISDGGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGLVAL 195

Query: 198 AFTEFVKGGSLV 202
           AFTEFVKGG+LV
Sbjct: 197 AFTEFVKGGTLV 195

BLAST of CmoCh06G013820 vs. ExPASy Swiss-Prot
Match: Q94K66 (Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP2 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-45
Identity = 112/210 (53.33%), Postives = 145/210 (69.05%), Query Frame = 0

Query: 1   MATSAL-LQAIPARSASRTTLRT--PTNRLCSRRTASFRVRCTAEEE--QREQAIPTPA- 60
           MAT++  +Q++ A  +   T R    TN+L  +R A   VRC A+ +  + + ++P+ + 
Sbjct: 1   MATASFNMQSVFAAPSGVLTTRNIRNTNQLFFKRIAPVGVRCMAQGDPIKEDPSVPSTST 60

Query: 61  ---PPTSNPSPPPPSPKPKVNNPFTSTSRSQSTDRTVSTKFSDVLAFSGPAPERINGRLA 120
              PP    SPPPP  KPK                 VSTKF D+LAFSGPAPERINGRLA
Sbjct: 61  SATPPQMPQSPPPPVSKPK-----------------VSTKFGDLLAFSGPAPERINGRLA 120

Query: 121 MIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMT 180
           M+GFVAA+A+E  KG++V  QI +GG+ WF+GT+ +LTLAS++PLFKG+  E+KSKG MT
Sbjct: 121 MVGFVAAIAMELSKGENVFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMT 180

Query: 181 SDAELWNGRFAMLGLVALAFTEFVKGGSLV 202
           SDAELWNGRFAMLGLVALAFTE+V GG+LV
Sbjct: 181 SDAELWNGRFAMLGLVALAFTEYVTGGTLV 193

BLAST of CmoCh06G013820 vs. ExPASy Swiss-Prot
Match: P11432 (Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-43
Identity = 113/210 (53.81%), Postives = 140/210 (66.67%), Query Frame = 0

Query: 1   MATSALLQAIPARSASRTTLRTPTNRLCS---------RRTASFRVRCTAEEEQREQAIP 60
           MA S+  Q+I + S +  + R+  N+  +         RR  S +VR  AE E +EQ+  
Sbjct: 1   MAVSS-CQSIMSNSMTNISSRSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKV 60

Query: 61  TPAPPTSNPSPPPPSPKPKVNNPFTSTSRSQSTDRTVSTKFSDVLAFSGPAPERINGRLA 120
              P T  P+   P+P+P    P             +STKFSD++AFSGPAPERINGRLA
Sbjct: 61  AVDPTT--PTASTPTPQPAYTRP-----------PKMSTKFSDLMAFSGPAPERINGRLA 120

Query: 121 MIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMT 180
           MIGFVAA+ VE  KGQ + EQ+  GG+ WF+GTSV+L+LASLIP F+GVSVESKSK +M+
Sbjct: 121 MIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMS 180

Query: 181 SDAELWNGRFAMLGLVALAFTEFVKGGSLV 202
           SDAE WNGR AMLGLVALAFTEFVKG SLV
Sbjct: 181 SDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196

BLAST of CmoCh06G013820 vs. ExPASy Swiss-Prot
Match: Q01931 (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum OX=4153 GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.0e-33
Identity = 96/213 (45.07%), Postives = 120/213 (56.34%), Query Frame = 0

Query: 1   MATSALLQAIPA---RSASRTTLRTPTNRLCS---------RRTASFRVRCTAEEEQREQ 60
           MA+S     IPA   R  S  T   P N             RR A F VR   E+ ++E+
Sbjct: 1   MASSTCYATIPAMSCRGQSTITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEE 60

Query: 61  AIPTPAPPTSNPSPPPPSPKPKVNNPFTSTSRSQSTDRTVSTKFSDVLAFSGPAPERING 120
                   T +  P             T      +T RTV     D+ +F G APERING
Sbjct: 61  QQQQKQQQTHDGGP-----------DLTPNRTEVTTKRTV-----DLFSFDGLAPERING 120

Query: 121 RLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKG 180
           R AMIGFVAAV VE   G+DV  Q+ NGG+ WF+ TS VL LA+LIP+++G+S E+K+ G
Sbjct: 121 RSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNG 180

Query: 181 LMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 202
              SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct: 181 FWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197

BLAST of CmoCh06G013820 vs. ExPASy Swiss-Prot
Match: P14895 (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-31
Identity = 82/165 (49.70%), Postives = 110/165 (66.67%), Query Frame = 0

Query: 40  TAEEEQREQAIPTPAPPTS-NPSPPPPSPKPKVNNPFTSTSRSQSTDRTVSTKFSDVLAF 99
           +A+E       P+P+  TS +P+  P +PKP                +  +    D LAF
Sbjct: 79  SAKETTSASTSPSPSQYTSPSPTTIPAAPKP--------------VTKKANPSVWDALAF 138

Query: 100 SGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIG--NGGIPWFVGTSVVLTLASLIPL 159
           SGPAPERINGRLAM+GFVAA++VEA +G  +L+Q+G  + G+ WF+ T+ V ++ASL+PL
Sbjct: 139 SGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPL 198

Query: 160 FKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 202
            +G SVESKS G+ ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct: 199 LQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229

BLAST of CmoCh06G013820 vs. ExPASy TrEMBL
Match: A0A6J1FFS2 (early light-induced protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445323 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.5e-88
Identity = 184/201 (91.54%), Postives = 184/201 (91.54%), Query Frame = 0

Query: 1   MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP 60
           MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP
Sbjct: 1   MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP 60

Query: 61  SPPPPSPKPKVNNPFTSTSRSQSTDRTVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVA 120
           SPPPPSPKPK                 VSTKFSDVLAFSGPAPERINGRLAMIGFVAAVA
Sbjct: 61  SPPPPSPKPK-----------------VSTKFSDVLAFSGPAPERINGRLAMIGFVAAVA 120

Query: 121 VEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGR 180
           VEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGR
Sbjct: 121 VEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGR 180

Query: 181 FAMLGLVALAFTEFVKGGSLV 202
           FAMLGLVALAFTEFVKGGSLV
Sbjct: 181 FAMLGLVALAFTEFVKGGSLV 184

BLAST of CmoCh06G013820 vs. ExPASy TrEMBL
Match: A0A6J1IB88 (early light-induced protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111473077 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.4e-87
Identity = 181/201 (90.05%), Postives = 181/201 (90.05%), Query Frame = 0

Query: 1   MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP 60
           MATSALLQAIP  SASRTT RTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP
Sbjct: 1   MATSALLQAIPVSSASRTTFRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNP 60

Query: 61  SPPPPSPKPKVNNPFTSTSRSQSTDRTVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVA 120
           SPPPPSPKPK                 VSTKFSDVLAFSGPAPERINGRLAMIGFVAAVA
Sbjct: 61  SPPPPSPKPK-----------------VSTKFSDVLAFSGPAPERINGRLAMIGFVAAVA 120

Query: 121 VEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGR 180
           VEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGR
Sbjct: 121 VEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGR 180

Query: 181 FAMLGLVALAFTEFVKGGSLV 202
           FAMLGLVALAFTEFVKGGSLV
Sbjct: 181 FAMLGLVALAFTEFVKGGSLV 184

BLAST of CmoCh06G013820 vs. ExPASy TrEMBL
Match: A0A5D3D3B2 (Early light-induced protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00800 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.8e-63
Identity = 144/208 (69.23%), Postives = 160/208 (76.92%), Query Frame = 0

Query: 1   MATSALLQAIPARSASRTTLRTPTN-------RLCSRRTASFRVRCTAEEEQREQAIPTP 60
           MA SA++Q+IP+ +ASR   RT TN       RLCSR T +FRVRCTAEE+QREQAIP+ 
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTAEEDQREQAIPSS 60

Query: 61  APPTSNPSPPPPSPKPKVNNPFTSTSRSQSTDRTVSTKFSDVLAFSGPAPERINGRLAMI 120
            P    PSPP   P P             ST +  STKF+D+LAFSGP PERINGRLAMI
Sbjct: 61  IP----PSPPKLEPAP------------SSTSKVTSTKFTDILAFSGPGPERINGRLAMI 120

Query: 121 GFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSD 180
           GFVAA+AVE  KGQDV EQI NGGIPWFVGTSVVLTLASLIPLFKGVS ES SKG+M+S+
Sbjct: 121 GFVAALAVEVSKGQDVFEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSN 180

Query: 181 AELWNGRFAMLGLVALAFTEFVKGGSLV 202
           AELWNGRFAMLGLVALAFTE+VKGGSLV
Sbjct: 181 AELWNGRFAMLGLVALAFTEYVKGGSLV 192

BLAST of CmoCh06G013820 vs. ExPASy TrEMBL
Match: A0A1S3AXH6 (early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483676 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.1e-62
Identity = 143/208 (68.75%), Postives = 159/208 (76.44%), Query Frame = 0

Query: 1   MATSALLQAIPARSASRTTLRTPTN-------RLCSRRTASFRVRCTAEEEQREQAIPTP 60
           MA SA++Q+IP+ +ASR   RT TN       RLCSR T +FRVRCT EE+QREQAIP+ 
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTGEEDQREQAIPSS 60

Query: 61  APPTSNPSPPPPSPKPKVNNPFTSTSRSQSTDRTVSTKFSDVLAFSGPAPERINGRLAMI 120
            P    PSPP   P P             ST +  STKF+D+LAFSGP PERINGRLAMI
Sbjct: 61  IP----PSPPKLEPAP------------SSTSKVTSTKFTDILAFSGPGPERINGRLAMI 120

Query: 121 GFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSD 180
           GFVAA+AVE  KGQDV EQI NGGIPWFVGTSVVLTLASLIPLFKGVS ES SKG+M+S+
Sbjct: 121 GFVAALAVEVSKGQDVFEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSN 180

Query: 181 AELWNGRFAMLGLVALAFTEFVKGGSLV 202
           AELWNGRFAMLGLVALAFTE+VKGGSLV
Sbjct: 181 AELWNGRFAMLGLVALAFTEYVKGGSLV 192

BLAST of CmoCh06G013820 vs. ExPASy TrEMBL
Match: A0A0A0LA49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 4.7e-61
Identity = 141/211 (66.82%), Postives = 159/211 (75.36%), Query Frame = 0

Query: 1   MATSALLQAIPARSASRTTLRTPTNRL-------CSRRTASFRVRCTAEEEQREQAIPT- 60
           MA SA++Q+I + +A+R   RT TNRL       CSR TA+FRVRC AEE+QREQAIP+ 
Sbjct: 1   MAASAVMQSILSTTATRGVYRTTTNRLLPAALRPCSRSTAAFRVRCMAEEDQREQAIPSS 60

Query: 61  --PAPPTSNPSPPPPSPKPKVNNPFTSTSRSQSTDRTVSTKFSDVLAFSGPAPERINGRL 120
             P+PP   PSP PPS                   +  STK +D+LAFSGP PERINGRL
Sbjct: 61  IPPSPPKPEPSPSPPS-------------------KVTSTKLTDILAFSGPGPERINGRL 120

Query: 121 AMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLM 180
           AMIGFVAA+AVE  KGQDV EQI NGGIPWFVGTSVVLTLASLIPLFKGVS ES SKG+M
Sbjct: 121 AMIGFVAALAVEVSKGQDVFEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIM 180

Query: 181 TSDAELWNGRFAMLGLVALAFTEFVKGGSLV 202
           +S+AELWNGRFAMLGLVALAFTE+VKGGSLV
Sbjct: 181 SSNAELWNGRFAMLGLVALAFTEYVKGGSLV 192

BLAST of CmoCh06G013820 vs. TAIR 10
Match: AT3G22840.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 196.1 bits (497), Expect = 2.8e-50
Identity = 115/192 (59.90%), Postives = 136/192 (70.83%), Query Frame = 0

Query: 18  TTLRTPTNRLCS-------RRTASFRVRCTAE-EEQREQAIPTPAPPTSNPSPPPPSPKP 77
           TT +  TN+L S       +R     VRC AE     E + P P+   + P P  PSP P
Sbjct: 17  TTRKINTNKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSPAPSTSAAQPLPKSPSPPP 76

Query: 78  KVNNPFTSTSRSQSTDRTVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDV 137
            +                VSTKFSD+LAFSGPAPERINGRLAM+GFVAA+AVE  KG++V
Sbjct: 77  PMK-------------PKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGENV 136

Query: 138 LEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVAL 197
           L QI +GG+ WF+GT+ +LTLASL+PLFKG+SVESKSKG+MTSDAELWNGRFAMLGLVAL
Sbjct: 137 LAQISDGGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGLVAL 195

Query: 198 AFTEFVKGGSLV 202
           AFTEFVKGG+LV
Sbjct: 197 AFTEFVKGGTLV 195

BLAST of CmoCh06G013820 vs. TAIR 10
Match: AT4G14690.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 184.5 bits (467), Expect = 8.4e-47
Identity = 112/210 (53.33%), Postives = 145/210 (69.05%), Query Frame = 0

Query: 1   MATSAL-LQAIPARSASRTTLRT--PTNRLCSRRTASFRVRCTAEEE--QREQAIPTPA- 60
           MAT++  +Q++ A  +   T R    TN+L  +R A   VRC A+ +  + + ++P+ + 
Sbjct: 1   MATASFNMQSVFAAPSGVLTTRNIRNTNQLFFKRIAPVGVRCMAQGDPIKEDPSVPSTST 60

Query: 61  ---PPTSNPSPPPPSPKPKVNNPFTSTSRSQSTDRTVSTKFSDVLAFSGPAPERINGRLA 120
              PP    SPPPP  KPK                 VSTKF D+LAFSGPAPERINGRLA
Sbjct: 61  SATPPQMPQSPPPPVSKPK-----------------VSTKFGDLLAFSGPAPERINGRLA 120

Query: 121 MIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMT 180
           M+GFVAA+A+E  KG++V  QI +GG+ WF+GT+ +LTLAS++PLFKG+  E+KSKG MT
Sbjct: 121 MVGFVAAIAMELSKGENVFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMT 180

Query: 181 SDAELWNGRFAMLGLVALAFTEFVKGGSLV 202
           SDAELWNGRFAMLGLVALAFTE+V GG+LV
Sbjct: 181 SDAELWNGRFAMLGLVALAFTEYVTGGTLV 193

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P937353.9e-4959.90Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q94K661.2e-4553.33Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=... [more]
P114321.9e-4353.81Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1[more]
Q019314.0e-3345.07Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum O... [more]
P148951.7e-3149.70High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum... [more]
Match NameE-valueIdentityDescription
A0A6J1FFS21.5e-8891.54early light-induced protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1IB886.4e-8790.05early light-induced protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN... [more]
A0A5D3D3B23.8e-6369.23Early light-induced protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A1S3AXH61.1e-6268.75early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348... [more]
A0A0A0LA494.7e-6166.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G22840.12.8e-5059.90Chlorophyll A-B binding family protein [more]
AT4G14690.18.4e-4753.33Chlorophyll A-B binding family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 101..144
e-value: 3.6E-5
score: 24.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..87
NoneNo IPR availablePANTHERPTHR14154UPF0041 BRAIN PROTEIN 44-RELATEDcoord: 1..191
NoneNo IPR availablePANTHERPTHR14154:SF5EARLY LIGHT-INDUCED PROTEIN 1, CHLOROPLASTICcoord: 1..191
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 82..197

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G013820.1CmoCh06G013820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009535 chloroplast thylakoid membrane