
CmoCh06G007930 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATTGTGAGATCCTATATTGGTTGGAGAGCAGAACGAAACATTCTTACAAGAATGTGGAAACCTCTCTGTAACAGATTGTTTGAAACTGTGAGGCTGACGACGATATATAACGGGTCAAAGCGGGTATTAGTAAGGTTAAGAGAAAAGATAGATTAATGAAAAAGAAATAAAGAAAAATGAAAGCAAGAGAAATAGTAGAGATAAATCTTAGAAATAAATAAGTTATAATTAGTTATCAAAACTCACTTTATAAAAAATTAAAAATACAAATAAAAGAGTCATTTCATGTTTTATTTGAAACATAGATAAAATTATTTTTTTAATCTTTTTTTTATTATAAAATGCCTATTTAATATTAAAAAATAATTAAATATAACATAATACTAAAAAATAAGTCTTAGATTTTTTCCACTTAAAAATGTGAGACCACAAAAAATTTTAAAAAAAGTACATCCTAAATATATTTATATATTTCTTTCTTTTAAAAAAATTCAAACAAAATCAATTATATAACAAAGCTTTCCTTTCCTTTCCTTTCACACTAAGAGAAAGCAAGAAACTAAAAGATTAGAAAAAATAAACAAAAAAGAAAAAAAAAAGATTCTAAATTGAGTGGCTGATAAAACTTTTAGAATTAAATGATTTGGAAAATTATGTAAACTTCAAAGTAAAATATGGTTTAAATTAGACAAATAGTTCTTATTTTTAGCAAATGTCCAAATTGTTTTTTAGGTAACTATGATTGATCTACCACCTCAAAAGTTCAATAGCAAACACACATGGGTGCATGGCTTTTGTTTTAAGAATCTTTTAAGTTCACTATTTACCCTTTGGGTTAAATTGAGTTGATGATATCTTTTAGATCAACCTGAAATTTTAAATTAGTTGGATTGGAGACCCGATCAATTCGAATAGAGTTCACAACCAAACTCCACTCAAATATTCTTATTCTCATTGTAGCATTGAGTTGAGTTATAACCCTATTTTCAAATTAGTTGGATAAACATGACAAAAAAAAAAATGTTAACCTACGGATCAACCTGAATTTTTCGATTTTCTAAAAATTCAATCAAATTCAAATCCAAAAAAATCTAACCCAATCTAACTTTTATAATTTCAGTTAGATAATCTAAATTGAGTAAGATTTTGAGTCATATGAACACGTACTTAAAATCTTTGTCTCATTTACAAAATAGCCTAATACCCACTTCTTAAACACTATAAAAACCCTCCCATCTCCTCCTCCATCCTCACCTCAAAAAGCCTTCTAGTAGACCAAAGGGATATAATATCTCTAGGGTTTTCAAACATGGCTTCATCCAAAACCACCACCTCCATTGCTTTGTTCTTCTCTCTCAACCTTCTCTTCTTTTCCCTAGCCAATGCTTGTGGCTCATGTTCCCACCCTATAAGAAGGCCAAGGCCCCCTCATTCAGGCGGCAGTCCCGGCTCCGGTGGAAGCCCCGGTTCCGGTGGCAGCCCGGGATCAGGAGGAAGTCCGGGTTCCGGTGGCAGCCCGGGCTCTGGTGGAAGCCCTGGTTCAGGTGGCAGCCCTGGCTCTGGTGGCAGTCCTGGAACAGGTAGTCCAGGTACTGGTGGAGGTACTTGTCCTAGGGATGCACTCAAGATCGGTGTATGTGCTAGAGTGCTAACCCTGGTAAATGCAACCATTGGCACTCCACCAGTAACACCATGCTGCACATTAATTCAAGGGCTAGCGGATCTTGAGGCAGCTGTTTGTCTTTGCACTGCAATCAGAGCAAGTATTTTAGGCATCAATATAAACCTTCCAATTAATCTTAGTCTACTACTTAACGTTTGCAGCAGAAATACTCCTCGTGGATTCCAGTGTCCCTAA ATGAATTACCAAAGGGATATAATATCTCTAGGGTTTTCAAACATGGCTTCATCCAAAACCACCACCTCCATTGCTTTGTTCTTCTCTCTCAACCTTCTCTTCTTTTCCCTAGCCAATGCTTGTGGCTCATGTTCCCACCCTATAAGAAGGCCAAGGCCCCCTCATTCAGGCGGCAGTCCCGGCTCCGGTGGAAGCCCCGGTTCCGGTGGCAGCCCGGGATCAGGAGGAAGTCCGGGTTCCGGTGGCAGCCCGGGCTCTGGTGGAAGCCCTGGTTCAGGTGGCAGCCCTGGCTCTGGTGGCAGTCCTGGAACAGGTAGTCCAGGTACTGGTGGAGGTACTTGTCCTAGGGATGCACTCAAGATCGGTGTATGTGCTAGAGTGCTAACCCTGGTAAATGCAACCATTGGCACTCCACCAGTAACACCATGCTGCACATTAATTCAAGGGCTAGCGGATCTTGAGGCAGCTGTTTGTCTTTGCACTGCAATCAGAGCAAGTATTTTAGGCATCAATATAAACCTTCCAATTAATCTTAGTCTACTACTTAACGTTTGCAGCAGAAATACTCCTCGTGGATTCCAGTGTCCCTAA ATGAATTACCAAAGGGATATAATATCTCTAGGGTTTTCAAACATGGCTTCATCCAAAACCACCACCTCCATTGCTTTGTTCTTCTCTCTCAACCTTCTCTTCTTTTCCCTAGCCAATGCTTGTGGCTCATGTTCCCACCCTATAAGAAGGCCAAGGCCCCCTCATTCAGGCGGCAGTCCCGGCTCCGGTGGAAGCCCCGGTTCCGGTGGCAGCCCGGGATCAGGAGGAAGTCCGGGTTCCGGTGGCAGCCCGGGCTCTGGTGGAAGCCCTGGTTCAGGTGGCAGCCCTGGCTCTGGTGGCAGTCCTGGAACAGGTAGTCCAGGTACTGGTGGAGGTACTTGTCCTAGGGATGCACTCAAGATCGGTGTATGTGCTAGAGTGCTAACCCTGGTAAATGCAACCATTGGCACTCCACCAGTAACACCATGCTGCACATTAATTCAAGGGCTAGCGGATCTTGAGGCAGCTGTTTGTCTTTGCACTGCAATCAGAGCAAGTATTTTAGGCATCAATATAAACCTTCCAATTAATCTTAGTCTACTACTTAACGTTTGCAGCAGAAATACTCCTCGTGGATTCCAGTGTCCCTAA MNYQRDIISLGFSNMASSKTTTSIALFFSLNLLFFSLANACGSCSHPIRRPRPPHSGGSPGSGGSPGSGGSPGSGGSPGSGGSPGSGGSPGSGGSPGSGGSPGTGSPGTGGGTCPRDALKIGVCARVLTLVNATIGTPPVTPCCTLIQGLADLEAAVCLCTAIRASILGININLPINLSLLLNVCSRNTPRGFQCP Homology
BLAST of CmoCh06G007930 vs. ExPASy Swiss-Prot
Match: Q9S7I2 (Putative lipid-binding protein AIR1 OS=Arabidopsis thaliana OX=3702 GN=AIR1 PE=2 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 4.0e-30 Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 0
BLAST of CmoCh06G007930 vs. ExPASy Swiss-Prot
Match: Q9ZSP6 (Putative lipid-binding protein AIR1B OS=Arabidopsis thaliana OX=3702 GN=AIR1B PE=3 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 6.4e-28 Identity = 63/85 (74.12%), Postives = 72/85 (84.71%), Query Frame = 0
BLAST of CmoCh06G007930 vs. ExPASy Swiss-Prot
Match: P14009 (14 kDa proline-rich protein DC2.15 OS=Daucus carota OX=4039 PE=2 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27 Identity = 76/180 (42.22%), Postives = 99/180 (55.00%), Query Frame = 0
BLAST of CmoCh06G007930 vs. ExPASy Swiss-Prot
Match: Q9SU35 (pEARLI1-like lipid transfer protein 1 OS=Arabidopsis thaliana OX=3702 GN=AZI1 PE=1 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 6.2e-23 Identity = 79/182 (43.41%), Postives = 106/182 (58.24%), Query Frame = 0
BLAST of CmoCh06G007930 vs. ExPASy Swiss-Prot
Match: Q39176 (Lipid transfer protein EARLI 1 OS=Arabidopsis thaliana OX=3702 GN=EARLI1 PE=1 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22 Identity = 85/184 (46.20%), Postives = 110/184 (59.78%), Query Frame = 0
BLAST of CmoCh06G007930 vs. ExPASy TrEMBL
Match: A0A6J1KTG8 (14 kDa proline-rich protein DC2.15-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498509 PE=3 SV=1) HSP 1 Score: 327.0 bits (837), Expect = 5.3e-86 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of CmoCh06G007930 vs. ExPASy TrEMBL
Match: A0A6J1FQZ7 (14 kDa proline-rich protein DC2.15-like OS=Cucurbita moschata OX=3662 GN=LOC111447980 PE=3 SV=1) HSP 1 Score: 327.0 bits (837), Expect = 5.3e-86 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
BLAST of CmoCh06G007930 vs. ExPASy TrEMBL
Match: A0A6J1KVB3 (pEARLI1-like lipid transfer protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498509 PE=3 SV=1) HSP 1 Score: 315.8 bits (808), Expect = 1.2e-82 Identity = 182/200 (91.00%), Postives = 182/200 (91.00%), Query Frame = 0
BLAST of CmoCh06G007930 vs. ExPASy TrEMBL
Match: A0A1S3BLL6 (lipid transfer protein EARLI 1-like OS=Cucumis melo OX=3656 GN=LOC103490903 PE=3 SV=1) HSP 1 Score: 272.7 bits (696), Expect = 1.2e-69 Identity = 163/210 (77.62%), Postives = 174/210 (82.86%), Query Frame = 0
BLAST of CmoCh06G007930 vs. ExPASy TrEMBL
Match: A0A5D3CP01 (Lipid transfer protein EARLI 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00170 PE=3 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 1.6e-69 Identity = 160/204 (78.43%), Postives = 171/204 (83.82%), Query Frame = 0
BLAST of CmoCh06G007930 vs. TAIR 10
Match: AT1G62510.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 136.7 bits (343), Expect = 2.0e-32 Identity = 89/180 (49.44%), Postives = 107/180 (59.44%), Query Frame = 0
BLAST of CmoCh06G007930 vs. TAIR 10
Match: AT4G12550.1 (Auxin-Induced in Root cultures 1 ) HSP 1 Score: 132.9 bits (333), Expect = 2.8e-31 Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 0
BLAST of CmoCh06G007930 vs. TAIR 10
Match: AT1G12090.1 (extensin-like protein ) HSP 1 Score: 129.8 bits (325), Expect = 2.4e-30 Identity = 85/176 (48.30%), Postives = 106/176 (60.23%), Query Frame = 0
BLAST of CmoCh06G007930 vs. TAIR 10
Match: AT4G12470.1 (azelaic acid induced 1 ) HSP 1 Score: 109.0 bits (271), Expect = 4.4e-24 Identity = 79/182 (43.41%), Postives = 106/182 (58.24%), Query Frame = 0
BLAST of CmoCh06G007930 vs. TAIR 10
Match: AT4G12480.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein ) HSP 1 Score: 108.2 bits (269), Expect = 7.5e-24 Identity = 85/184 (46.20%), Postives = 110/184 (59.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|