CmoCh06G005620 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G005620
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Spindle and kinetochore-associated protein 3
Location	Cmo_Chr06: 2743936 .. 2748060 (+)
RNA-Seq Expression	CmoCh06G005620
Synteny	CmoCh06G005620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACATCTGAAAGAGAAGAAGAATGGAGGATCTGATATCGAACTTCAACAAAACCCTAGCGCCATTTTGCAATCATCTTCAAAACAGCTGCAATGCCCTCAAACAGTCCGTCGATCGCCGCCCCATTCCTCTCGGTACGCACTATCTCCATCTCTTTCTTACCTTGTCTTCTCTTTTCGGTACTCCGACGAATGGAATTTGATTGAAAATTACAAAGAATTGCTGCCTTGATAAACTAGGAGATCGAATATGGCTGTTTTTTCTTTTCCGTTCGTGAATTTGCTTTTGTGTTTTGCTTTGATGAATTAGACTGCAATTTTGAGGTTGTTGATAAGTAAGGGTTGCTGATTTGTGCTAATTGTTGAGACTATATACTCTAGATTCGGCATCATCGACCTTCATACAATCTCTCAACCGCCGCGTGTCGGCTGTTAGTGTTGATCTCAGTTTGCTCGAATCAAAGTCCTTAGCAACAGTATCCTTTGAGGAGCTGTTAGGGCACGTCAGTGAAGTTTACAAGAAGAACGAAAGCGATCTCCAAGAGATACAAAAGCAGCTTAAGGGCGTCGGATACGTTCCAGGTGAATTACATTGAATTCCTTCTTTTCTTGAATGTTGTGATGAAATGACGAGTGGAGTAGCTTTAAATAGGATACATACGATCCTTATTATTATTAATCTTTAAATTCTCAATATCATTTAATTTTTATCGAAAAATCATAGAACAAAAGGGAAAGAATGATTATTAATTTTATTAATGCTGCATCATTTATCTTCTTTTGCCTTAGAGTTTGAGATCGAAGAAGAAGACGAAAATTATAACCATGCATTAACATCTGGATTGTGTTTCGAGCTTTCAAGCTCCATGGATGGATTGAACGTACCGTCTTCATACCAGAGATCGGTCTCTATGACAGGACTTGCCAAGCATAATTTCGAAGAAGACATACTGTATTGTATCCTTCCCTCCTCCTTCCCTTGTTATATAGTAGTATCTTATCTTATTGGTTATATATAAATAGAGAGAAGTAGAAGATTGAAACTGTGGTTCTTTACCCACAAATTCAAGGCACTTGACTTGGCTGACGGCACGCTCATGGGTGCGCCAGCTGAGGTTAGAGATGAAGCAAGGCAGAACGGCAACATGTGCAAGGCTAGAGTATGCAATGCACACATTCCCGGTTTGGCTTGTTCTGTCCCTGAGTTTGTTGTAAATATGCACCTTGACCTTGTTTTTGCAAGGCATAGCAAACCAAGTGCTTTAAAATTTGTGGATATGAAATTCTCTAAGTGTGGCACACTAAGTGCAGTTACCTCTTTAGGGCTTCTGTGCGTGGCCAAAAAAAGTGATCCTACTTATTATTATTTTTGAGTGAAGCATGCAATAGAAAAATTCAATTAAAATAATAGAAGAAAAGTACAGTATGAAAAATTATAGAAATAAGGATTTTTTTTCAGAAATTCTTTAAAGATATAACAATTTCCCCCTTATTTCTTTTTAACCAGTAAAAGAATACAAAAGTTTAAAAAAACCGGAGGTCGCATGCTGCACACCTTTCAAAACACAGGATTGGTACAAGTGTATAAAAAGATAGCTACCTATCAATTAGCGAATTATCTTGTACCCTCAATCACTTGGTTGTTCTTGTCATTTCCAGACTCGATGACTCTTTAAGTTTACAAAATGCTGGGCTTTCAGATGTTTGTCTGGCTACTTTAGCATCTGAAGGTAAGAAGACTCTAATTGCCACTTGCCTTTATATGCTATTTTCCAGAATATGTAAGAGGAGTAAAAATGATGGTTATCCATATTTTGAAGGAGTTTGAACTTCGATTGTTTTTGGTTATCTGTAATGGCTTTATTCTTCGCTTAAGGCTTTCTTAACAAGCAACTTCTCATTATTGCGTTTATAGGTAACTCCAGGTTTGATGATCCGTATGTGGATTTTCATACCCCGAAAAAGTAGGTTCAAATCTGTATAAATTATATTATGATTTTAGAAGATCATTTGATTGAATTTGAACATTTGTTGTTTCTTTTCATTTCATCAGCAGCTCGTATATTGCCAAATAAAAGATTAGTAAATTGAATCATAGGATTCATTTTTCTTTTCAGGTTCTTAGGGAAACCACTTGACTCCAATTTTCCATGCCAATCTGCTGCACAAATTGGAGTGTCTGAAGGTAGGAAGTTCGTAGATTGCAGTCTTAGGCATTATTATTTTAATGGTTTTTTGACCTATATCAAGGTATGAAGTTCATGACTTTGGCATTTGTATGAGGCAGAGGAAGGTGAAGATTACTTGAAATATGAAGAGGCCATTTCACCTTCAATTAAGCTATCAAAGGATGACTTTGAAAGTATCCCATCATATATGAAGAGCCTAGCATCATGGGAGGTACGACACTATATAATTCCATTTGATTTTATTCATTAATGTTTGTTGAGTTTCCATTATATATCTACCTTTGTTAATTTGATGGTTGAGAGCCCTTCCTAACTAGCCGAGAGTTATTACTAAATGCATGATGAATTAGATGAAAATTAAATAGCCCTTCTAACAAGCCGAAGAGTCACCACATGTAGTTCTAAATAAGCAATCAGAGTAGTTCATACCGTTTCCTCCTAGTTTTAGTAACACGGTCAGTGCTATTCACACCTACGTTCCAACAAGTTCTCGAGGAGGTTTTAAGCCGAAGTCTAAGGTTTCTGGTAATACGGTTGGTTTCCAAAGAAGGTAACATCCACGGAGAAGATTTCTTTGACCTGGGAAGTAGCATCTATCCTTTCTGATTTGAAGCATATCCTAGAAAGATGCATTTAATGGCCTCTGGGTCAAGTGTACTTCGATTGGGAGATGGATGTTGAAAAAAATCTATAAACTCGAATATATCCTAGGGGATGATGTTAAGAACAGTCTCTTTATAGGGGTAATACTCCAGAAGAATCTGTGCGGGACTTTTTATACTTATAGTTGTACAAGCAAACATTTTGCCAATTGGATAGGTTGTAATAAGGGATAGCTTCACCCAAACATGTTCGGGTAAGTGACCATCGTAAGAGATTTAGCTATATCTTGAAGGTGTAGTTTTTTCTTTGAGCAATTCTACTTTATTGAGGAGTGTCATTGCAAGAACTTTAGCGAACAATCCCATTTTATGATCGCGTTGTGTGAGGAATTTGAATGTAAATATGTCATGATCCCTTACATCCCCAAAAACCCTCGACTAAAATTACAAGAACGTTACCTGTATATTCGCGTGATACTTCCTACGATTAACCTTGTGCATAAAATTGTTATTTCTATTTGCAAAATTTTTACATCTTTGAAATCCAACTTGTCCAGGACCTCATCGTGGCCGTTGAGAAGATCAACTCATGTCTGAAAATGAAAGCCAAGGGAAAAAACTACATCTTTCAAGACGAAGTTTCATCAATGGGCCTTGGTAATCTACACGTACTAATTTAATCATATACTCCAGTCAAGAAGACATTAAAAGAAAAAAGAACCAACAAAAGCTTAACGACTTTTAATGGTTAAGTAGAACCAATGCACTTAGTGCCATGAAAATATTTTTAGATTGTGTAGGAGAATTTGAATGTGTGACCTCTTAATTTAGGACATATTTTTAACTAGATGAGCATAGTTGCTGCATGCGATATTTGCATTTTTTTTTTTTTTTTGTGCATCTTTGCAAAAGGAAAAGCATTCACTCTTTGACTATGATCTACATTTGATTACCTTCCTTTCTCACCATATTCTCCGTAGACATGCACCATGATATAGTCTAGACATGCCATTGTCACGCTATTTCATCGGTTGGTGTTTGTAAGTGAGGCGGAATTAAGAGAGTAAATTTACATCACATTTGGCATATACCGAGGTAGCGGAATGAAACTTGTCCAGAATCAATGACTATTAATAACAAGCAATGTAGTGACGGAGTTCTCATTTTTGTAGGTCCCAAAGCGAGATCTTTTCTGATGATACTTGTACGAATGAAGCGGGTTGTTGTGGAGACGGTTAATGATCAGATATCCTACAGGGTCTTATAGACTGGATATACAATAAAATTGACGACAACAAACAAGTTTGTACCCCAAATTTAAGTTATCACATTGCA

mRNA sequence

GAACATCTGAAAGAGAAGAAGAATGGAGGATCTGATATCGAACTTCAACAAAACCCTAGCGCCATTTTGCAATCATCTTCAAAACAGCTGCAATGCCCTCAAACAGTCCGTCGATCGCCGCCCCATTCCTCTCGATTCGGCATCATCGACCTTCATACAATCTCTCAACCGCCGCGTGTCGGCTGTTAGTGTTGATCTCAGTTTGCTCGAATCAAAGTCCTTAGCAACAGTATCCTTTGAGGAGCTGTTAGGGCACGTCAGTGAAGTTTACAAGAAGAACGAAAGCGATCTCCAAGAGATACAAAAGCAGCTTAAGGGCGTCGGATACGTTCCAGAGTTTGAGATCGAAGAAGAAGACGAAAATTATAACCATGCATTAACATCTGGATTGTGTTTCGAGCTTTCAAGCTCCATGGATGGATTGAACGTACCGTCTTCATACCAGAGATCGGTCTCTATGACAGGACTTGCCAAGCATAATTTCGAAGAAGACATACTATTGAAACTGTGGTTCTTTACCCACAAATTCAAGGCACTTGACTTGGCTGACGGCACGCTCATGGGTGCGCCAGCTGAGGTTAGAGATGAAGCAAGGCAGAACGGCAACATGTGCAAGGCTAGAGTATGCAATGCACACATTCCCGGTTTGGCTTGTTCTGTCCCTGAACTCGATGACTCTTTAAGTTTACAAAATGCTGGGCTTTCAGATGTTTGTCTGGCTACTTTAGCATCTGAAGGTAACTCCAGGTTTGATGATCCGTATGTGGATTTTCATACCCCGAAAAAGTTCTTAGGGAAACCACTTGACTCCAATTTTCCATGCCAATCTGCTGCACAAATTGGAGTGTCTGAAGAGGAAGGTGAAGATTACTTGAAATATGAAGAGGCCATTTCACCTTCAATTAAGCTATCAAAGGATGACTTTGAAAGTATCCCATCATATATGAAGAGCCTAGCATCATGGGAGGACCTCATCGTGGCCGTTGAGAAGATCAACTCATGTCTGAAAATGAAAGCCAAGGGAAAAAACTACATCTTTCAAGACGAAGTTTCATCAATGGGCCTTGGTCCCAAAGCGAGATCTTTTCTGATGATACTTGTACGAATGAAGCGGGTTGTTGTGGAGACGGTTAATGATCAGATATCCTACAGGGTCTTATAGACTGGATATACAATAAAATTGACGACAACAAACAAGTTTGTACCCCAAATTTAAGTTATCACATTGCA

Coding sequence (CDS)

ATGGAGGATCTGATATCGAACTTCAACAAAACCCTAGCGCCATTTTGCAATCATCTTCAAAACAGCTGCAATGCCCTCAAACAGTCCGTCGATCGCCGCCCCATTCCTCTCGATTCGGCATCATCGACCTTCATACAATCTCTCAACCGCCGCGTGTCGGCTGTTAGTGTTGATCTCAGTTTGCTCGAATCAAAGTCCTTAGCAACAGTATCCTTTGAGGAGCTGTTAGGGCACGTCAGTGAAGTTTACAAGAAGAACGAAAGCGATCTCCAAGAGATACAAAAGCAGCTTAAGGGCGTCGGATACGTTCCAGAGTTTGAGATCGAAGAAGAAGACGAAAATTATAACCATGCATTAACATCTGGATTGTGTTTCGAGCTTTCAAGCTCCATGGATGGATTGAACGTACCGTCTTCATACCAGAGATCGGTCTCTATGACAGGACTTGCCAAGCATAATTTCGAAGAAGACATACTATTGAAACTGTGGTTCTTTACCCACAAATTCAAGGCACTTGACTTGGCTGACGGCACGCTCATGGGTGCGCCAGCTGAGGTTAGAGATGAAGCAAGGCAGAACGGCAACATGTGCAAGGCTAGAGTATGCAATGCACACATTCCCGGTTTGGCTTGTTCTGTCCCTGAACTCGATGACTCTTTAAGTTTACAAAATGCTGGGCTTTCAGATGTTTGTCTGGCTACTTTAGCATCTGAAGGTAACTCCAGGTTTGATGATCCGTATGTGGATTTTCATACCCCGAAAAAGTTCTTAGGGAAACCACTTGACTCCAATTTTCCATGCCAATCTGCTGCACAAATTGGAGTGTCTGAAGAGGAAGGTGAAGATTACTTGAAATATGAAGAGGCCATTTCACCTTCAATTAAGCTATCAAAGGATGACTTTGAAAGTATCCCATCATATATGAAGAGCCTAGCATCATGGGAGGACCTCATCGTGGCCGTTGAGAAGATCAACTCATGTCTGAAAATGAAAGCCAAGGGAAAAAACTACATCTTTCAAGACGAAGTTTCATCAATGGGCCTTGGTCCCAAAGCGAGATCTTTTCTGATGATACTTGTACGAATGAAGCGGGTTGTTGTGGAGACGGTTAATGATCAGATATCCTACAGGGTCTTATAG

Protein sequence

MEDLISNFNKTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAVSVDLSLLESKSLATVSFEELLGHVSEVYKKNESDLQEIQKQLKGVGYVPEFEIEEEDENYNHALTSGLCFELSSSMDGLNVPSSYQRSVSMTGLAKHNFEEDILLKLWFFTHKFKALDLADGTLMGAPAEVRDEARQNGNMCKARVCNAHIPGLACSVPELDDSLSLQNAGLSDVCLATLASEGNSRFDDPYVDFHTPKKFLGKPLDSNFPCQSAAQIGVSEEEGEDYLKYEEAISPSIKLSKDDFESIPSYMKSLASWEDLIVAVEKINSCLKMKAKGKNYIFQDEVSSMGLGPKARSFLMILVRMKRVVVETVNDQISYRVL

Homology

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BLAST of CmoCh06G005620 vs. ExPASy TrEMBL
Match: A0A6J1FRE7 (Spindle and kinetochore-associated protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111448119 PE=3 SV=1)

HSP 1 Score: 603.2 bits (1554), Expect = 7.4e-169
Identity = 323/379 (85.22%), Postives = 323/379 (85.22%), Query Frame = 0


Query: 1   MEDLISNFNKTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAVSVDLS 60
           MEDLISNFNKTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAVSVDLS
Sbjct: 1   MEDLISNFNKTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAVSVDLS 60

Query: 61  LLESKSLATVSFEELLGHVSEVYKKNESDLQEIQKQLKGVGYVPEFEIEEEDENYNHALT 120
           LLESKSLATVSFEELLGHVSEVYKKNESDLQEIQKQLKGVGYVPEFEIEEEDENYNHALT
Sbjct: 61  LLESKSLATVSFEELLGHVSEVYKKNESDLQEIQKQLKGVGYVPEFEIEEEDENYNHALT 120

Query: 121 SGLCFELSSSMDGLNVPSSYQRSVSMTGLAKHNFEEDILLKLWFFTHKFKALDLADGTLM 180
           SGLCFELSSSMDGLNVPSSYQRSVSMTGLAKHNFEEDIL                     
Sbjct: 121 SGLCFELSSSMDGLNVPSSYQRSVSMTGLAKHNFEEDIL--------------------- 180

Query: 181 GAPAEVRDEARQNGNMCKARVCNAHIPGLACSVPELDDSLSLQNAGLSDVCLATLASEGN 240
                                              LDDSLSLQNAGLSDVCLATLASEGN
Sbjct: 181 -----------------------------------LDDSLSLQNAGLSDVCLATLASEGN 240

Query: 241 SRFDDPYVDFHTPKKFLGKPLDSNFPCQSAAQIGVSEEEGEDYLKYEEAISPSIKLSKDD 300
           SRFDDPYVDFHTPKKFLGKPLDSNFPCQSAAQIGVSEEEGEDYLKYEEAISPSIKLSKDD
Sbjct: 241 SRFDDPYVDFHTPKKFLGKPLDSNFPCQSAAQIGVSEEEGEDYLKYEEAISPSIKLSKDD 300

Query: 301 FESIPSYMKSLASWEDLIVAVEKINSCLKMKAKGKNYIFQDEVSSMGLGPKARSFLMILV 360
           FESIPSYMKSLASWEDLIVAVEKINSCLKMKAKGKNYIFQDEVSSMGLGPKARSFLMILV
Sbjct: 301 FESIPSYMKSLASWEDLIVAVEKINSCLKMKAKGKNYIFQDEVSSMGLGPKARSFLMILV 323

Query: 361 RMKRVVVETVNDQISYRVL 380
           RMKRVVVETVNDQISYRVL
Sbjct: 361 RMKRVVVETVNDQISYRVL 323

[Close]

BLAST of CmoCh06G005620 vs. ExPASy TrEMBL
Match: A0A6J1FRD9 (Spindle and kinetochore-associated protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111448119 PE=3 SV=1)

HSP 1 Score: 598.6 bits (1542), Expect = 1.8e-167
Identity = 323/380 (85.00%), Postives = 323/380 (85.00%), Query Frame = 0


Query: 1   MEDLISNFNKTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAVSVDLS 60
           MEDLISNFNKTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAVSVDLS
Sbjct: 1   MEDLISNFNKTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAVSVDLS 60

Query: 61  LLESKSLATVSFEELLGHVSEVYKKNESDLQEIQKQLKGVGYVPEFEIEEEDENYNHALT 120
           LLESKSLATVSFEELLGHVSEVYKKNESDLQEIQKQLKGVGYVPEFEIEEEDENYNHALT
Sbjct: 61  LLESKSLATVSFEELLGHVSEVYKKNESDLQEIQKQLKGVGYVPEFEIEEEDENYNHALT 120

Query: 121 SGLCFELSSSMDGLNVPSSYQRSVSMTGLAKHNFEEDILLKLWFFTHKFKALDLADGTLM 180
           SGLCFELSSSMDGLNVPSSYQRSVSMTGLAKHNFEEDIL                     
Sbjct: 121 SGLCFELSSSMDGLNVPSSYQRSVSMTGLAKHNFEEDIL--------------------- 180

Query: 181 GAPAEVRDEARQNGNMCKARVCNAHIPGLACSVPELDDSLSLQNAGLSDVCLATLASEGN 240
                                              LDDSLSLQNAGLSDVCLATLASEGN
Sbjct: 181 -----------------------------------LDDSLSLQNAGLSDVCLATLASEGN 240

Query: 241 SRFDDPYVDFHTPKKFLGKPLDSNFPCQSAAQIGVSE-EEGEDYLKYEEAISPSIKLSKD 300
           SRFDDPYVDFHTPKKFLGKPLDSNFPCQSAAQIGVSE EEGEDYLKYEEAISPSIKLSKD
Sbjct: 241 SRFDDPYVDFHTPKKFLGKPLDSNFPCQSAAQIGVSEAEEGEDYLKYEEAISPSIKLSKD 300

Query: 301 DFESIPSYMKSLASWEDLIVAVEKINSCLKMKAKGKNYIFQDEVSSMGLGPKARSFLMIL 360
           DFESIPSYMKSLASWEDLIVAVEKINSCLKMKAKGKNYIFQDEVSSMGLGPKARSFLMIL
Sbjct: 301 DFESIPSYMKSLASWEDLIVAVEKINSCLKMKAKGKNYIFQDEVSSMGLGPKARSFLMIL 324

Query: 361 VRMKRVVVETVNDQISYRVL 380
           VRMKRVVVETVNDQISYRVL
Sbjct: 361 VRMKRVVVETVNDQISYRVL 324

[Close]

BLAST of CmoCh06G005620 vs. ExPASy TrEMBL
Match: A0A6J1KVT7 (Spindle and kinetochore-associated protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111498640 PE=3 SV=1)

HSP 1 Score: 569.7 bits (1467), Expect = 9.1e-159
Identity = 308/379 (81.27%), Postives = 314/379 (82.85%), Query Frame = 0


Query: 1   MEDLISNFNKTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAVSVDLS 60
           MEDLISNF+KTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAV+VD+S
Sbjct: 1   MEDLISNFSKTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAVTVDVS 60

Query: 61  LLESKSLATVSFEELLGHVSEVYKKNESDLQEIQKQLKGVGYVPEFEIEEEDENYNHALT 120
           LLES SL TVSFEELLGHVSEVYKKNESDL EIQKQLK VGYVPEFEI+EED+NYNHALT
Sbjct: 61  LLESISLETVSFEELLGHVSEVYKKNESDLLEIQKQLKSVGYVPEFEIDEEDKNYNHALT 120

Query: 121 SGLCFELSSSMDGLNVPSSYQRSVSMTGLAKHNFEEDILLKLWFFTHKFKALDLADGTLM 180
           SGL FELSSS DGLNVPSSYQRSVSMTGLAKHNFEEDIL                     
Sbjct: 121 SGLRFELSSSKDGLNVPSSYQRSVSMTGLAKHNFEEDIL--------------------- 180

Query: 181 GAPAEVRDEARQNGNMCKARVCNAHIPGLACSVPELDDSLSLQNAGLSDVCLATLASEGN 240
                                              LDDSLSLQNAGLSDVCLATLASEGN
Sbjct: 181 -----------------------------------LDDSLSLQNAGLSDVCLATLASEGN 240

Query: 241 SRFDDPYVDFHTPKKFLGKPLDSNFPCQSAAQIGVSEEEGEDYLKYEEAISPSIKLSKDD 300
           SRFDDPY DFHTPKKFLGKPLDSNFPCQSAAQIGVSEEEGEDYLKYEEAISPSIKLSKDD
Sbjct: 241 SRFDDPYADFHTPKKFLGKPLDSNFPCQSAAQIGVSEEEGEDYLKYEEAISPSIKLSKDD 300

Query: 301 FESIPSYMKSLASWEDLIVAVEKINSCLKMKAKGKNYIFQDEVSSMGLGPKARSFLMILV 360
           FESIPSYMKSLASWEDLIVAVE INS LKMKAKGKNYIFQDEVSSMGLGPKARSFLMILV
Sbjct: 301 FESIPSYMKSLASWEDLIVAVENINSFLKMKAKGKNYIFQDEVSSMGLGPKARSFLMILV 323

Query: 361 RMKRVVVETVNDQISYRVL 380
           RMKRVVVETV+DQISYRVL
Sbjct: 361 RMKRVVVETVDDQISYRVL 323

[Close]

BLAST of CmoCh06G005620 vs. ExPASy TrEMBL
Match: A0A6J1KY77 (Spindle and kinetochore-associated protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111498640 PE=3 SV=1)

HSP 1 Score: 565.1 bits (1455), Expect = 2.2e-157
Identity = 308/380 (81.05%), Postives = 314/380 (82.63%), Query Frame = 0


Query: 1   MEDLISNFNKTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAVSVDLS 60
           MEDLISNF+KTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAV+VD+S
Sbjct: 1   MEDLISNFSKTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAVTVDVS 60

Query: 61  LLESKSLATVSFEELLGHVSEVYKKNESDLQEIQKQLKGVGYVPEFEIEEEDENYNHALT 120
           LLES SL TVSFEELLGHVSEVYKKNESDL EIQKQLK VGYVPEFEI+EED+NYNHALT
Sbjct: 61  LLESISLETVSFEELLGHVSEVYKKNESDLLEIQKQLKSVGYVPEFEIDEEDKNYNHALT 120

Query: 121 SGLCFELSSSMDGLNVPSSYQRSVSMTGLAKHNFEEDILLKLWFFTHKFKALDLADGTLM 180
           SGL FELSSS DGLNVPSSYQRSVSMTGLAKHNFEEDIL                     
Sbjct: 121 SGLRFELSSSKDGLNVPSSYQRSVSMTGLAKHNFEEDIL--------------------- 180

Query: 181 GAPAEVRDEARQNGNMCKARVCNAHIPGLACSVPELDDSLSLQNAGLSDVCLATLASEGN 240
                                              LDDSLSLQNAGLSDVCLATLASEGN
Sbjct: 181 -----------------------------------LDDSLSLQNAGLSDVCLATLASEGN 240

Query: 241 SRFDDPYVDFHTPKKFLGKPLDSNFPCQSAAQIGVSE-EEGEDYLKYEEAISPSIKLSKD 300
           SRFDDPY DFHTPKKFLGKPLDSNFPCQSAAQIGVSE EEGEDYLKYEEAISPSIKLSKD
Sbjct: 241 SRFDDPYADFHTPKKFLGKPLDSNFPCQSAAQIGVSEAEEGEDYLKYEEAISPSIKLSKD 300

Query: 301 DFESIPSYMKSLASWEDLIVAVEKINSCLKMKAKGKNYIFQDEVSSMGLGPKARSFLMIL 360
           DFESIPSYMKSLASWEDLIVAVE INS LKMKAKGKNYIFQDEVSSMGLGPKARSFLMIL
Sbjct: 301 DFESIPSYMKSLASWEDLIVAVENINSFLKMKAKGKNYIFQDEVSSMGLGPKARSFLMIL 324

Query: 361 VRMKRVVVETVNDQISYRVL 380
           VRMKRVVVETV+DQISYRVL
Sbjct: 361 VRMKRVVVETVDDQISYRVL 324

[Close]

BLAST of CmoCh06G005620 vs. ExPASy TrEMBL
Match: A0A6J1DAY1 (Spindle and kinetochore-associated protein 3 OS=Momordica charantia OX=3673 GN=LOC111019317 PE=3 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 9.2e-135
Identity = 266/379 (70.18%), Postives = 288/379 (75.99%), Query Frame = 0


Query: 1   MEDLISNFNKTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAVSVDLS 60
           ME+LISNF+KTLAPFCNHLQN+C+ALKQSVDRRPIPLDSASSTFIQSLNRRVS V VDL+
Sbjct: 1   MEELISNFSKTLAPFCNHLQNTCDALKQSVDRRPIPLDSASSTFIQSLNRRVSTVGVDLN 60

Query: 61  LLESKSLATVSFEELLGHVSEVYKKNESDLQEIQKQLKGVGYVPEFEIEEEDENYNHALT 120
           LLES SL TVSFEELLGHVSEVYKKNESDL E+QK +KGVGYVPEFEI+E+DE YNH  T
Sbjct: 61  LLESMSLETVSFEELLGHVSEVYKKNESDLLELQKHVKGVGYVPEFEIDEDDEIYNHVST 120

Query: 121 SGLCFELSSSMDGLNVPSSYQRSVSMTGLAKHNFEEDILLKLWFFTHKFKALDLADGTLM 180
           SGL F++SS  DGL+VPSSYQRSVS TGLA H+F EDIL                     
Sbjct: 121 SGLNFDISSPKDGLSVPSSYQRSVSTTGLAMHSFREDIL--------------------- 180

Query: 181 GAPAEVRDEARQNGNMCKARVCNAHIPGLACSVPELDDSLSLQNAGLSDVCLATLASEGN 240
                                              LDD LSLQNAGLSDVCLATLASEGN
Sbjct: 181 -----------------------------------LDDLLSLQNAGLSDVCLATLASEGN 240

Query: 241 SRFDDPYVDFHTPKKFLGKPLDSNFPCQSAAQIGVSEEEGEDYLKYEEAISPSIKLSKDD 300
           S FDDPY D HTPK+FL KPLDS FPCQ    +G+SE EGEDYL  +EAISP IKLSKDD
Sbjct: 241 STFDDPYGDLHTPKRFLEKPLDSKFPCQ-VQIVGLSEGEGEDYLTSKEAISPLIKLSKDD 300

Query: 301 FESIPSYMKSLASWEDLIVAVEKINSCLKMKAKGKNYIFQDEVSSMGLGPKARSFLMILV 360
           FES+PSYMKSL SWEDLIVAVEKINSCL+MKAKGKNYI QDE+SSM LGPKARSFL+I V
Sbjct: 301 FESLPSYMKSLVSWEDLIVAVEKINSCLEMKAKGKNYILQDEISSMDLGPKARSFLLIFV 322

Query: 361 RMKRVVVETVNDQISYRVL 380
           RMKRV VETV+ QISYRVL
Sbjct: 361 RMKRVAVETVDGQISYRVL 322

[Close]

BLAST of CmoCh06G005620 vs. TAIR 10
Match: AT5G06590.1 (unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 226.5 bits (576), Expect = 3.6e-59
Identity = 147/381 (38.58%), Postives = 205/381 (53.81%), Query Frame = 0


Query: 1   MEDLISNFNKTLAPFCNHLQNSCNALKQSVDRRPIPLDSASSTFIQSLNRRVSAVSVDLS 60
           ME+ + + +K+L  FCNHLQ+SC+A   S+ RRPIPLDSASSTFI+ LNRR+S  + +LS
Sbjct: 1   MEEELKSLSKSLGGFCNHLQSSCDAFNHSLQRRPIPLDSASSTFIKGLNRRISTAASELS 60

Query: 61  LLESKSLATVSFEELLGHVSEVYKKNESDLQEIQKQLKGVGYVPEFEIEEEDENYNHALT 120
            LES S  TVSFEELLGH S++YK N+ DL  +Q +L   GYVPE EI+E  +    ++ 
Sbjct: 61  FLESMSFGTVSFEELLGHCSQIYKNNQKDLLHLQDRLTDFGYVPEIEIDEGRD--EESVF 120

Query: 121 SGLCFELSSSMDGLNVPSSYQRSVSMTGLAKHNFEEDILLKLWFFTHKFKALDLADGTLM 180
                E S   D      S Q S+      K   +ED L                     
Sbjct: 121 GAFGHEASKHSDDDLESHSLQCSI------KKGLDEDNL--------------------- 180

Query: 181 GAPAEVRDEARQNGNMCKARVCNAHIPGLACSVPELDDSLSLQNAGLSDVCLATLASEGN 240
                                              LD+SL+L+N GLSD CLA LA+  N
Sbjct: 181 -----------------------------------LDNSLNLKNLGLSDACLAYLATGVN 240

Query: 241 SRFDDPYVDFHTPKKFLGKPLDSN-FPCQSAAQIGVSEEEGEDYLKYEEAISPSIKLSKD 300
               DP  D    +   GK  D+   P  +A+++  S E+    L+ ++   P++ L K+
Sbjct: 241 DNVKDP--DTSLKESVKGKSFDTRALPAPNASEL--SNEDEYATLEMDKTSGPTLTLIKE 300

Query: 301 DFESIPSYMKSLASWEDLIVAVEKINSCL--KMKAKGKNYIFQDEVSSMGLGPKARSFLM 360
           +++S+PS+MKSLASWEDL+ AV+K NS L  K +  G  Y   DE+ ++GLG K +++ +
Sbjct: 301 EYDSLPSFMKSLASWEDLLSAVQKFNSVLDSKKEINGSYYFRADEIPTLGLGHKEKAYTL 313

Query: 361 ILVRMKRVVVETVNDQISYRV 379
           +L RMKR+VVET +  ISYRV
Sbjct: 361 LLTRMKRLVVETTDGVISYRV 313

The following BLAST results are available for this feature:

BLAST of CmoCh06G005620 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G005620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FRE7	7.4e-169	85.22	Spindle and kinetochore-associated protein 3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1FRD9	1.8e-167	85.00	Spindle and kinetochore-associated protein 3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KVT7	9.1e-159	81.27	Spindle and kinetochore-associated protein 3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1KY77	2.2e-157	81.05	Spindle and kinetochore-associated protein 3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1DAY1	9.2e-135	70.18	Spindle and kinetochore-associated protein 3 OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of CmoCh06G005620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06590.1	3.6e-59	38.58	unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033341	Spindle and kinetochore-associated protein 3	PANTHER	PTHR48118	SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 3	coord: 1..377

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G005620.1	CmoCh06G005620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0007059	chromosome segregation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000940	outer kinetochore
cellular_component	GO:0005819	spindle