CmoCh06G005200 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G005200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein YLS9
Location	Cmo_Chr06: 2504724 .. 2505479 (-)
RNA-Seq Expression	CmoCh06G005200
Synteny	CmoCh06G005200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGACCGCCGGGTGCGTTTCGTTCCCGGTCGTTTTTCATGACGGCGAACGAGATGCCGACGTCGGTTCCGTCGCTGTGTCTTCTTCGACGGAGTTCAAGAATTTTCAGTCGATTTTGAGTAAGATGATCGGAATCTCTTCGCACCAGTTCACGGTTTACTTAGCGGAGTATAAGATCTCTATGGATTCCACGGCAAAGATTCGGCGGAGAATCCCTATCACCGGGAAAGTCAACTTCGGCGCAATCGCACACGAGAAGAACTGTTTCTTTCTCGTGGTTCTGAAACGGTCTCGACGCGAGAGAAGGCGAAAGATCCAGGGAAACGAAGACGAATACGATTTCTCATCGGCCACAAAGACAATGACGAAGACGAATCATTCAAAGAAGAAAAATCCACTGGAGAATGTGATGCTGTTGAAACGAAACACTGGCATCGAAAACGAATTACTCCCCGGCTTCATCTCGCCAGCGACGAACCGATTCGAATACGACCAGCGATTTTGGAAGCTACAATTAGAGATGGAGAAATACTTAATCAACATAGGGCAACGCAATCTGGCGCTGGGCGGAGGCGGCGTCCAGAACGGCACTACGAGACTGAAAACGGCAGTCTGCTGGGACTGTCTGAATGCCAAAGAAACAGGCGTGGCGGCCGGATTTCACTGCTGCGCCCACGACGCCGTGACGACGGGATTCCGGTCACACGCCGGTCCAATTGCCCGACCCGTGAAAGAATCCGACCCGAAATAG

mRNA sequence

ATGGTGGAGACCGCCGGGTGCGTTTCGTTCCCGGTCGTTTTTCATGACGGCGAACGAGATGCCGACGTCGGTTCCGTCGCTGTGTCTTCTTCGACGGAGTTCAAGAATTTTCAGTCGATTTTGAGTAAGATGATCGGAATCTCTTCGCACCAGTTCACGGTTTACTTAGCGGAGTATAAGATCTCTATGGATTCCACGGCAAAGATTCGGCGGAGAATCCCTATCACCGGGAAAGTCAACTTCGGCGCAATCGCACACGAGAAGAACTGTTTCTTTCTCGTGGTTCTGAAACGGTCTCGACGCGAGAGAAGGCGAAAGATCCAGGGAAACGAAGACGAATACGATTTCTCATCGGCCACAAAGACAATGACGAAGACGAATCATTCAAAGAAGAAAAATCCACTGGAGAATGTGATGCTGTTGAAACGAAACACTGGCATCGAAAACGAATTACTCCCCGGCTTCATCTCGCCAGCGACGAACCGATTCGAATACGACCAGCGATTTTGGAAGCTACAATTAGAGATGGAGAAATACTTAATCAACATAGGGCAACGCAATCTGGCGCTGGGCGGAGGCGGCGTCCAGAACGGCACTACGAGACTGAAAACGGCAGTCTGCTGGGACTGTCTGAATGCCAAAGAAACAGGCGTGGCGGCCGGATTTCACTGCTGCGCCCACGACGCCGTGACGACGGGATTCCGGTCACACGCCGGTCCAATTGCCCGACCCGTGAAAGAATCCGACCCGAAATAG

Coding sequence (CDS)

ATGGTGGAGACCGCCGGGTGCGTTTCGTTCCCGGTCGTTTTTCATGACGGCGAACGAGATGCCGACGTCGGTTCCGTCGCTGTGTCTTCTTCGACGGAGTTCAAGAATTTTCAGTCGATTTTGAGTAAGATGATCGGAATCTCTTCGCACCAGTTCACGGTTTACTTAGCGGAGTATAAGATCTCTATGGATTCCACGGCAAAGATTCGGCGGAGAATCCCTATCACCGGGAAAGTCAACTTCGGCGCAATCGCACACGAGAAGAACTGTTTCTTTCTCGTGGTTCTGAAACGGTCTCGACGCGAGAGAAGGCGAAAGATCCAGGGAAACGAAGACGAATACGATTTCTCATCGGCCACAAAGACAATGACGAAGACGAATCATTCAAAGAAGAAAAATCCACTGGAGAATGTGATGCTGTTGAAACGAAACACTGGCATCGAAAACGAATTACTCCCCGGCTTCATCTCGCCAGCGACGAACCGATTCGAATACGACCAGCGATTTTGGAAGCTACAATTAGAGATGGAGAAATACTTAATCAACATAGGGCAACGCAATCTGGCGCTGGGCGGAGGCGGCGTCCAGAACGGCACTACGAGACTGAAAACGGCAGTCTGCTGGGACTGTCTGAATGCCAAAGAAACAGGCGTGGCGGCCGGATTTCACTGCTGCGCCCACGACGCCGTGACGACGGGATTCCGGTCACACGCCGGTCCAATTGCCCGACCCGTGAAAGAATCCGACCCGAAATAG

Protein sequence

MVETAGCVSFPVVFHDGERDADVGSVAVSSSTEFKNFQSILSKMIGISSHQFTVYLAEYKISMDSTAKIRRRIPITGKVNFGAIAHEKNCFFLVVLKRSRRERRRKIQGNEDEYDFSSATKTMTKTNHSKKKNPLENVMLLKRNTGIENELLPGFISPATNRFEYDQRFWKLQLEMEKYLINIGQRNLALGGGGVQNGTTRLKTAVCWDCLNAKETGVAAGFHCCAHDAVTTGFRSHAGPIARPVKESDPK

Homology

[Close]

BLAST of CmoCh06G005200 vs. ExPASy TrEMBL
Match: A0A0A0LER6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G780540 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 9.5e-96
Identity = 188/252 (74.60%), Postives = 210/252 (83.33%), Query Frame = 0


Query: 1   MVETAGCVSFPVVFHDGERDADVGSVAVSSSTEFKNFQSILSKMIGISSHQFTVYLAEYK 60
           M ET   VSFP+VFHDGERD ++GSV VSSSTEFKNFQS LSKMIGISSHQFTVYLAEYK
Sbjct: 1   MAETVEGVSFPIVFHDGERDTNIGSVIVSSSTEFKNFQSSLSKMIGISSHQFTVYLAEYK 60

Query: 61  ISMDSTAKIRRRIPITGKVNFGAIAHEKNCFFLVVLKRSRRERRRK-IQGNEDEYDFSSA 120
           IS+DS+ KIRRRIPITGKVNFGAI+ EKN FFLVVLKRSRRERRRK I  NE++Y FSSA
Sbjct: 61  ISLDSSTKIRRRIPITGKVNFGAISGEKNSFFLVVLKRSRRERRRKVIHDNEEDYYFSSA 120

Query: 121 TKTMTKTNHSKKKNPLENVMLLKRNTGIENELLPGFISPATNRFEYDQRFWKLQLEMEKY 180
           TKT TKTN  KKKNP ENVMLL+RN GIENELL GFISP  +R+EY+ R  KLQLE EKY
Sbjct: 121 TKTQTKTNLLKKKNPPENVMLLRRNGGIENELLAGFISPVMDRYEYEDRIRKLQLEKEKY 180

Query: 181 LINIGQRNLAL--GGGGVQNGTTRLKTAVCWDCLNAKETGVAAGFHCCAHDAVTTGFRSH 240
           L++I   NL +  GG G +N + R +  +C DCL+AKE GVAAGFHCCA+DAVT GFRSH
Sbjct: 181 LMSIQMSNLRMGDGGDGGRNKSGRSERRICGDCLSAKERGVAAGFHCCANDAVTAGFRSH 240

Query: 241 AGPIARPVKESD 250
           AGPIARPVKES+
Sbjct: 241 AGPIARPVKESE 252

[Close]

BLAST of CmoCh06G005200 vs. ExPASy TrEMBL
Match: A0A5A7TLT1 (Protein YLS9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004520 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 2.0e-93
Identity = 182/250 (72.80%), Postives = 209/250 (83.60%), Query Frame = 0


Query: 1   MVETAGCVSFPVVFHDGERDADVGSVAVSSSTEFKNFQSILSKMIGISSHQFTVYLAEYK 60
           M +T   VSFP+VFHDGERD ++GSV VSSSTEFKNFQS LSKMIGISSHQFTVYLAEYK
Sbjct: 1   MADTVEGVSFPIVFHDGERDTNIGSVIVSSSTEFKNFQSSLSKMIGISSHQFTVYLAEYK 60

Query: 61  ISMDSTAKIRRRIPITGKVNFGAIAHEKNCFFLVVLKRSRRERRRK-IQGNEDEYDFSSA 120
           IS+DS+ KIRRRIPITGKVNFGAI+ EKN FFLVVLKRSRRERRRK I  NE++Y FSSA
Sbjct: 61  ISLDSSTKIRRRIPITGKVNFGAISGEKNSFFLVVLKRSRRERRRKVIHDNEEDYYFSSA 120

Query: 121 TKTMTKTNHSKKKNPLENVMLLKRNTGIENELLPGFISPATNRFEYDQRFWKLQLEMEKY 180
           TKT TKTN  KKKNP ENVMLL+RN GIENELL GF+SP  +R+EY++R  KLQLE EKY
Sbjct: 121 TKTQTKTNQPKKKNPPENVMLLRRNGGIENELLSGFVSPVMDRYEYEERIRKLQLEREKY 180

Query: 181 LINIGQRNLAL--GGGGVQNGTTRLKTAVCWDCLNAKETGVAAGFHCCAHDAVTTGFRSH 240
           LI++   NL +  GG G +N + R +T +C DC++AKE GVAAGFHCCA+DAVT GFRS 
Sbjct: 181 LISLQINNLTMRGGGDGGRNNSGRSETRICRDCVSAKERGVAAGFHCCANDAVTAGFRSL 240

Query: 241 AGPIARPVKE 248
           AGPIARPV++
Sbjct: 241 AGPIARPVEK 250

[Close]

BLAST of CmoCh06G005200 vs. ExPASy TrEMBL
Match: A0A6A1UKZ8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004710 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 7.1e-59
Identity = 135/256 (52.73%), Postives = 175/256 (68.36%), Query Frame = 0


Query: 1   MVETAGCVSFPVVFHDGERDADVGSVAVSSSTEFKNFQSILSKMIGISSHQFTVYLAEYK 60
           MVE A  VSFPVVF DGER++++G+V VS S +FK+FQSI+S+ IGIS HQF+VYLA   
Sbjct: 1   MVEIASGVSFPVVFFDGERESNIGNVLVSPSLQFKSFQSIMSRKIGISPHQFSVYLA--- 60

Query: 61  ISMDSTAKIRRRIPITGKVNFGAIAHEKNCFFLVVLKRSRRERRRKIQ--GNEDEYDFSS 120
             +   ++  R+IPITGK NFG I  +K+CFFLVVLKRSRRER+R+ Q    ED+Y ++S
Sbjct: 61  --VKHRSETLRKIPITGKFNFGTIFRDKDCFFLVVLKRSRRERKRRNQRASQEDKY-YAS 120

Query: 121 ATKTMTKTNHSKKKNPLENVMLLKRNTGIENELLPGFISPATNRFEYDQRFWKLQLEMEK 180
           +   + + N    K P ENVMLL+RN  I ++  PGF SP  +R  Y++R  +LQ+E E+
Sbjct: 121 SMNVVQRLN----KIP-ENVMLLRRNDAIGSQGFPGFASPIVDRAGYEKRVRELQMERER 180

Query: 181 YLINIGQRNLALG----GGGVQNGTTRLKTAVCWDCLNAKETGVAAGFHCCAHDAVTTGF 240
           YL N+G R L LG    GG  +N  TR     C +C+ AK  G   GFH C +DAVT+GF
Sbjct: 181 YLTNMGLRGLCLGKEDNGGVDENVVTRNGVVECEECMRAKAIGTEVGFHWCVYDAVTSGF 240

Query: 241 RSHAGPIARPVKESDP 251
           RS AGPIARPVK S+P
Sbjct: 241 RSPAGPIARPVKGSNP 245

[Close]

BLAST of CmoCh06G005200 vs. ExPASy TrEMBL
Match: A0A6P9E6Z6 (uncharacterized protein LOC118347905 OS=Juglans regia OX=51240 GN=LOC118347905 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 3.6e-55
Identity = 131/256 (51.17%), Postives = 167/256 (65.23%), Query Frame = 0


Query: 1   MVETAGCVSFPVVFHDGERDADVGSVAVSSSTEFKNFQSILSKMIGISSHQFTVYLAEYK 60
           MV  A  VSFPVVF DGER+  +G V V  S  FKNFQSILS+ IGIS HQF+VYLA   
Sbjct: 8   MVGIADGVSFPVVFFDGERETSIGDVVVHPSLGFKNFQSILSRKIGISPHQFSVYLA--- 67

Query: 61  ISMDSTAKIRRRIPITGKVNFGAIAHEKNCFFLVVLKRSRRERRRKI--QGNEDEYDFSS 120
             +   ++  R+IPITGKVNF AI+ EK+CFFLV+LKRSRRER+R+   +  E+EY  SS
Sbjct: 68  --VKYRSETLRKIPITGKVNFAAISREKDCFFLVILKRSRRERKRRTRKEFQEEEYYASS 127

Query: 121 ATKTMTKTNHSKKKNPLENVMLLKRNTGIENELLPGFISPATNRFEYDQRFWKLQLEMEK 180
               M+      KK P+ NVMLL+R+ G E +  PG++SP  +R  Y++R  +LQ+E E+
Sbjct: 128 ----MSVVQRRNKKVPV-NVMLLRRDAGTEGQAFPGYVSPIVDRDGYEKRVKELQMERER 187

Query: 181 YLINIGQRNLAL----GGGGVQNGTTR--LKTAVCWDCLNAKETGVAAGFHCCAHDAVTT 240
           YLIN+G   L+L     GG  + G  R  +    C +C+ AK+ G   GFH C +D VT 
Sbjct: 188 YLINMGLSGLSLEKEDNGGVGERGVARNGVVDVECEECMRAKQIGDEVGFHGCVYDTVTV 247

Query: 241 GFRSHAGPIARPVKES 249
           GFRS AGPIARPVK S
Sbjct: 248 GFRSPAGPIARPVKGS 253

[Close]

BLAST of CmoCh06G005200 vs. ExPASy TrEMBL
Match: W9S997 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003317 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 6.0e-50
Identity = 124/251 (49.40%), Postives = 158/251 (62.95%), Query Frame = 0


Query: 1   MVETAGCVSFPVVFHDGERDADVGSVAVSSSTEFKNFQSILSKMIGISSHQFTVYLAEYK 60
           MVE  G VSFPVVF DGE + ++GSVAV ++ EFK FQ++LS+ IGIS HQF+V+L    
Sbjct: 1   MVEIPGGVSFPVVFFDGEHETEIGSVAVYAAMEFKRFQALLSQKIGISPHQFSVHL---- 60

Query: 61  ISMDSTAKIRRRIPITGKVNFGAIAHEKNCFFLVVLKRSRRERRRKIQGNEDEYDFSSAT 120
               S+ + RR+IPITGKVNFGAI  EK CFF+VVLKRSRR RRRK   +  + D+    
Sbjct: 61  ----SSPESRRKIPITGKVNFGAICREKGCFFVVVLKRSRRPRRRKSHHHHHQ-DYLDDV 120

Query: 121 KTMTKTNHSK--KKNPLENVMLLKRNTGIENELLPGFISPATNRFEYDQRFWKLQLEMEK 180
                 +HS    KNP  NVMLL+R+  ++       +S +++R EY+ R   LQLE E 
Sbjct: 121 ILYLDADHSLMISKNPPPNVMLLRRDAAVD-----CCVSSSSDRVEYENRVLNLQLEKET 180

Query: 181 YLINIGQRNLALGGGGVQNGTTRLKTAVCWDCLNAKETGVAAGFHCCAHDAVTTGFRSHA 240
           YL+N+G     L G G +   T     VC DC+ AKE G  AGFH C +DAVT GFR  A
Sbjct: 181 YLMNMG-----LSGLGREANET--AAPVCGDCVKAKELGQEAGFHWCVYDAVTFGFRPPA 230

Query: 241 GPIARPVKESD 250
           GPIARP +  +
Sbjct: 241 GPIARPFRRPE 230

The following BLAST results are available for this feature:

BLAST of CmoCh06G005200 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G005200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LER6	9.5e-96	74.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G780540 PE=4 SV=1	[more]
A0A5A7TLT1	2.0e-93	72.80	Protein YLS9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004520 ...	[more]
A0A6A1UKZ8	7.1e-59	52.73	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G004710 PE=4 SV=1	[more]
A0A6P9E6Z6	3.6e-55	51.17	uncharacterized protein LOC118347905 OS=Juglans regia OX=51240 GN=LOC118347905 P...	[more]
W9S997	6.0e-50	49.40	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_003317 PE=4 SV=1	[more]

BLAST of CmoCh06G005200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36351:SF1	EMBRYO SAC DEVELOPMENT ARREST 12	coord: 1..248
None	No IPR available	PANTHER	PTHR36351	EMBRYO SAC DEVELOPMENT ARREST 12	coord: 1..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G005200.1	CmoCh06G005200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane