CmoCh06G004880 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G004880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Cmo_Chr06: 2358797 .. 2360698 (+)
RNA-Seq Expression	CmoCh06G004880
Synteny	CmoCh06G004880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAAATCCAAAAGCCAAATCATTTTCATCAACAATGGAAAGCTTCGATTTTCCTCCGCTTCAGCAACGACTGCAGTGAAAGAAGCTTCTATTTCTGTGCAGTTCAATGTGAATAACCACTCAAATGAACCAAATTCCTCAACCCAAGAATCTCAATCTTCTTTCCTTCTCTATTTTCACCCCAAACGATTTATAACTTTGCTTTTGAGTTGCAGAAATCTCTTTCAAATTAGGCAAGTCCATGGCCATATTGCTTCCAGTGGCGCATTTAGAAACCTCGCGATTGCTAACAAACTTCTCTTCTTATACGCCCAATATGGCGCCTTGGAGGATGCTCATGAACTGTTTGATGAAATGACTGAGAGAGATTCTTATAGCTGGAGTGTAATAGTTGGTGGGTATGCCAAAGTTAAGGATTTTTCTTCTTGTTTTTGGATGTTTAGGGAGCTTGTTCGTTGTGGGATGCCATTGGATAACTATACATTGCCAATTGTTATAAGGGCCTGCAGAGATTTGAAGGACCTGCAATTTGGTAGGGTTATTCATTGTGCCACTTCGAAATGTGGGCTGGATTTTGATCATTTTGTTTGTGCATCTCTTGTTGATATGTATGCTAGGTGTAAAGTGATTGAGGATGCCCGCCAACTGTTTGATAAAATGCCAAGGAGAGATCTTGTGACATGGACAGTGATGGTTGGTGCCTTGGCTGAATGTAGCAGTGCTGTTGAGTCATTGACTTTGTTTGATAGGATGAGGGATGAAGGTATTGTCCCTGATAAAGTGGCGTTGGTGACTGTTGTTTATGCCTGCGCAAAGTTGGGCGCCATGAATAAGGCCAGGGCAATTCATGACTATATTAATGGAACCAGATATGTTTTGGATGTAATTTTAGGGACAGCAATGATCGATATGTATGCGAAATGTGGGAGTGTTGATTTGGCAAGGGAGATTTTTGATCAGATGCAAGTGAAGAATGTGATTACATGGAGTGCCATGATTGCAGCCTATGGATATCACGGACAAGGCGGGAAAGCGCTCGAGTTATTCCCAATGATGTTAAGCAGCGGAATATTGCCAAATCGGATCACGTTTGTCTCGTTGTTGTATGCTTGTAGTCATGCTGGTCTAATTGAAGAGGGCCAGAGATTTTTTGCCTCAATGTGGGATGAGTACGGTGTAAGACCGGATGTAAAACACTATACTTGCATGGTTGATCTCCTAGGTCGAGCCGGGAGGTTCGATGAGGCCTTGGAATTGATAGAAAGCATGACAGTAGAGAAAGATGAAGGACTATGGGGAGCGTTACTGGGGGCATGTCGGATTCACCGACGTTTAGATTTGGCGAAAAGGGTGGCAAGCTCTCTTCTTGAGCTACAGCCGCAGAACCCAGGGCATTATGTATTGCTTTCAAACATATATGCAAATGCTGGCAAGTGGAAAGATATGGCAAAAACAAGAGATTTGATGACCAAATGTGGACTAAAGAAGATCCCTGGATGGACATGGATTGAGGTGGATGAAAAACTCTATCAATTCAGCGTTGGAGATAAAACACATCCGAGGTCGAGCGAGATCTATGAGATGCTGAAACGAGTGGGCGAGAAGCTTGAGTTGGCTGGCTATGTCCCGGATACAAACTATGTGCTGCATGATGTTGATGAGGAAGTAAAGCAAGGACTTCTATATGCACATAGTGAAAAGTTGGCCATTGCGTTTGGCTTAATAGTCATACCTGGAGACACTCCTATAAGGATTACAAAGAATCTTAGAGTTTGTGGTGACTGCCATACATTTTGCAAGTTTGTATCGTCGATTGAACGGAGAACGATCATACTACGTGACGCCAACCGGTTTCACCACTTCAAGGAAGGGGCTTGCTCATGCAGAGACTATTGGTAA

mRNA sequence

ATGCTGAAATCCAAAAGCCAAATCATTTTCATCAACAATGGAAAGCTTCGATTTTCCTCCGCTTCAGCAACGACTGCAGTGAAAGAAGCTTCTATTTCTGTGCAGTTCAATGTGAATAACCACTCAAATGAACCAAATTCCTCAACCCAAGAATCTCAATCTTCTTTCCTTCTCTATTTTCACCCCAAACGATTTATAACTTTGCTTTTGAGTTGCAGAAATCTCTTTCAAATTAGGCAAGTCCATGGCCATATTGCTTCCAGTGGCGCATTTAGAAACCTCGCGATTGCTAACAAACTTCTCTTCTTATACGCCCAATATGGCGCCTTGGAGGATGCTCATGAACTGTTTGATGAAATGACTGAGAGAGATTCTTATAGCTGGAGTGTAATAGTTGGTGGGTATGCCAAAGTTAAGGATTTTTCTTCTTGTTTTTGGATGTTTAGGGAGCTTGTTCGTTGTGGGATGCCATTGGATAACTATACATTGCCAATTGTTATAAGGGCCTGCAGAGATTTGAAGGACCTGCAATTTGGTAGGGTTATTCATTGTGCCACTTCGAAATGTGGGCTGGATTTTGATCATTTTGTTTGTGCATCTCTTGTTGATATGTATGCTAGGTGTAAAGTGATTGAGGATGCCCGCCAACTGTTTGATAAAATGCCAAGGAGAGATCTTGTGACATGGACAGTGATGGTTGGTGCCTTGGCTGAATGTAGCAGTGCTGTTGAGTCATTGACTTTGTTTGATAGGATGAGGGATGAAGGTATTGTCCCTGATAAAGTGGCGTTGGTGACTGTTGTTTATGCCTGCGCAAAGTTGGGCGCCATGAATAAGGCCAGGGCAATTCATGACTATATTAATGGAACCAGATATGTTTTGGATGTAATTTTAGGGACAGCAATGATCGATATGTATGCGAAATGTGGGAGTGTTGATTTGGCAAGGGAGATTTTTGATCAGATGCAAGTGAAGAATGTGATTACATGGAGTGCCATGATTGCAGCCTATGGATATCACGGACAAGGCGGGAAAGCGCTCGAGTTATTCCCAATGATGTTAAGCAGCGGAATATTGCCAAATCGGATCACGTTTGTCTCGTTGTTGTATGCTTGTAGTCATGCTGGTCTAATTGAAGAGGGCCAGAGATTTTTTGCCTCAATGTGGGATGAGTACGGTGTAAGACCGGATGTAAAACACTATACTTGCATGGTTGATCTCCTAGGTCGAGCCGGGAGGTTCGATGAGGCCTTGGAATTGATAGAAAGCATGACAGTAGAGAAAGATGAAGGACTATGGGGAGCGTTACTGGGGGCATGTCGGATTCACCGACGTTTAGATTTGGCGAAAAGGGTGGCAAGCTCTCTTCTTGAGCTACAGCCGCAGAACCCAGGGCATTATGTATTGCTTTCAAACATATATGCAAATGCTGGCAAGTGGAAAGATATGGCAAAAACAAGAGATTTGATGACCAAATGTGGACTAAAGAAGATCCCTGGATGGACATGGATTGAGGTGGATGAAAAACTCTATCAATTCAGCGTTGGAGATAAAACACATCCGAGGTCGAGCGAGATCTATGAGATGCTGAAACGAGTGGGCGAGAAGCTTGAGTTGGCTGGCTATGTCCCGGATACAAACTATGTGCTGCATGATGTTGATGAGGAAGTAAAGCAAGGACTTCTATATGCACATAGTGAAAAGTTGGCCATTGCGTTTGGCTTAATAGTCATACCTGGAGACACTCCTATAAGGATTACAAAGAATCTTAGAGTTTGTGGTGACTGCCATACATTTTGCAAGTTTGTATCGTCGATTGAACGGAGAACGATCATACTACGTGACGCCAACCGGTTTCACCACTTCAAGGAAGGGGCTTGCTCATGCAGAGACTATTGGTAA

Coding sequence (CDS)

ATGCTGAAATCCAAAAGCCAAATCATTTTCATCAACAATGGAAAGCTTCGATTTTCCTCCGCTTCAGCAACGACTGCAGTGAAAGAAGCTTCTATTTCTGTGCAGTTCAATGTGAATAACCACTCAAATGAACCAAATTCCTCAACCCAAGAATCTCAATCTTCTTTCCTTCTCTATTTTCACCCCAAACGATTTATAACTTTGCTTTTGAGTTGCAGAAATCTCTTTCAAATTAGGCAAGTCCATGGCCATATTGCTTCCAGTGGCGCATTTAGAAACCTCGCGATTGCTAACAAACTTCTCTTCTTATACGCCCAATATGGCGCCTTGGAGGATGCTCATGAACTGTTTGATGAAATGACTGAGAGAGATTCTTATAGCTGGAGTGTAATAGTTGGTGGGTATGCCAAAGTTAAGGATTTTTCTTCTTGTTTTTGGATGTTTAGGGAGCTTGTTCGTTGTGGGATGCCATTGGATAACTATACATTGCCAATTGTTATAAGGGCCTGCAGAGATTTGAAGGACCTGCAATTTGGTAGGGTTATTCATTGTGCCACTTCGAAATGTGGGCTGGATTTTGATCATTTTGTTTGTGCATCTCTTGTTGATATGTATGCTAGGTGTAAAGTGATTGAGGATGCCCGCCAACTGTTTGATAAAATGCCAAGGAGAGATCTTGTGACATGGACAGTGATGGTTGGTGCCTTGGCTGAATGTAGCAGTGCTGTTGAGTCATTGACTTTGTTTGATAGGATGAGGGATGAAGGTATTGTCCCTGATAAAGTGGCGTTGGTGACTGTTGTTTATGCCTGCGCAAAGTTGGGCGCCATGAATAAGGCCAGGGCAATTCATGACTATATTAATGGAACCAGATATGTTTTGGATGTAATTTTAGGGACAGCAATGATCGATATGTATGCGAAATGTGGGAGTGTTGATTTGGCAAGGGAGATTTTTGATCAGATGCAAGTGAAGAATGTGATTACATGGAGTGCCATGATTGCAGCCTATGGATATCACGGACAAGGCGGGAAAGCGCTCGAGTTATTCCCAATGATGTTAAGCAGCGGAATATTGCCAAATCGGATCACGTTTGTCTCGTTGTTGTATGCTTGTAGTCATGCTGGTCTAATTGAAGAGGGCCAGAGATTTTTTGCCTCAATGTGGGATGAGTACGGTGTAAGACCGGATGTAAAACACTATACTTGCATGGTTGATCTCCTAGGTCGAGCCGGGAGGTTCGATGAGGCCTTGGAATTGATAGAAAGCATGACAGTAGAGAAAGATGAAGGACTATGGGGAGCGTTACTGGGGGCATGTCGGATTCACCGACGTTTAGATTTGGCGAAAAGGGTGGCAAGCTCTCTTCTTGAGCTACAGCCGCAGAACCCAGGGCATTATGTATTGCTTTCAAACATATATGCAAATGCTGGCAAGTGGAAAGATATGGCAAAAACAAGAGATTTGATGACCAAATGTGGACTAAAGAAGATCCCTGGATGGACATGGATTGAGGTGGATGAAAAACTCTATCAATTCAGCGTTGGAGATAAAACACATCCGAGGTCGAGCGAGATCTATGAGATGCTGAAACGAGTGGGCGAGAAGCTTGAGTTGGCTGGCTATGTCCCGGATACAAACTATGTGCTGCATGATGTTGATGAGGAAGTAAAGCAAGGACTTCTATATGCACATAGTGAAAAGTTGGCCATTGCGTTTGGCTTAATAGTCATACCTGGAGACACTCCTATAAGGATTACAAAGAATCTTAGAGTTTGTGGTGACTGCCATACATTTTGCAAGTTTGTATCGTCGATTGAACGGAGAACGATCATACTACGTGACGCCAACCGGTTTCACCACTTCAAGGAAGGGGCTTGCTCATGCAGAGACTATTGGTAA

Protein sequence

MLKSKSQIIFINNGKLRFSSASATTAVKEASISVQFNVNNHSNEPNSSTQESQSSFLLYFHPKRFITLLLSCRNLFQIRQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEMTERDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILGTAMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGILPNRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALELIESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKWKDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLELAGYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFCKFVSSIERRTIILRDANRFHHFKEGACSCRDYW

Homology

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BLAST of CmoCh06G004880 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 1.2e-136
Identity = 232/588 (39.46%), Postives = 362/588 (61.56%), Query Frame = 0


Query: 79  RQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAH------------------------ 138
           +Q+HGH+   G   +L +   L+ +Y Q G LEDAH                        
Sbjct: 154 QQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASR 213

Query: 139 -------ELFDEMTERDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVI 198
                  +LFDE+  +D  SW+ ++ GYA+  ++     +F+++++  +  D  T+  V+
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273

Query: 199 RACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLV 258
            AC     ++ GR +H      G   +  +  +L+D+Y++C  +E A  LF+++P +D++
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333

Query: 259 TWTVMVGALAECSSAVESLTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYI 318
           +W  ++G     +   E+L LF  M   G  P+ V +++++ ACA LGA++  R IH YI
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393

Query: 319 N-GTRYVLDV-ILGTAMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGK 378
           +   + V +   L T++IDMYAKCG ++ A ++F+ +  K++ +W+AMI  +  HG+   
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453

Query: 379 ALELFPMMLSSGILPNRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMV 438
           + +LF  M   GI P+ ITFV LL ACSH+G+++ G+  F +M  +Y + P ++HY CM+
Sbjct: 454 SFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMI 513

Query: 439 DLLGRAGRFDEALELIESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPG 498
           DLLG +G F EA E+I  M +E D  +W +LL AC++H  ++L +  A +L++++P+NPG
Sbjct: 514 DLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPG 573

Query: 499 HYVLLSNIYANAGKWKDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSE 558
            YVLLSNIYA+AG+W ++AKTR L+   G+KK+PG + IE+D  +++F +GDK HPR+ E
Sbjct: 574 SYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 633

Query: 559 IYEMLKRVGEKLELAGYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIR 618
           IY ML+ +   LE AG+VPDT+ VL +++EE K+G L  HSEKLAIAFGLI     T + 
Sbjct: 634 IYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLT 693

Query: 619 ITKNLRVCGDCHTFCKFVSSIERRTIILRDANRFHHFKEGACSCRDYW 634
           I KNLRVC +CH   K +S I +R II RD  RFHHF++G CSC DYW
Sbjct: 694 IVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741

[Close]

BLAST of CmoCh06G004880 vs. ExPASy Swiss-Prot
Match: Q9SI53 (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 6.0e-136
Identity = 232/568 (40.85%), Postives = 357/568 (62.85%), Query Frame = 0


Query: 66  ITLLLSCRNLFQIRQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEMTERDS 125
           I   +S R + +   +  H+  +G    + + N L+ +Y ++  L DAH+LFD+M +R+ 
Sbjct: 68  IKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNV 127

Query: 126 YSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCA 185
            SW+ ++  Y+K K       +   ++R  +  + YT   V+R+C  + D+   R++HC 
Sbjct: 128 ISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCG 187

Query: 186 TSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVES 245
             K GL+ D FV ++L+D++A+    EDA  +FD+M   D + W  ++G  A+ S +  +
Sbjct: 188 IIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVA 247

Query: 246 LTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILGTAMIDM 305
           L LF RM+  G + ++  L +V+ AC  L  +      H +I   +Y  D+IL  A++DM
Sbjct: 248 LELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI--VKYDQDLILNNALVDM 307

Query: 306 YAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGILPNRITF 365
           Y KCGS++ A  +F+QM+ ++VITWS MI+    +G   +AL+LF  M SSG  PN IT 
Sbjct: 308 YCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITI 367

Query: 366 VSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALELIESMT 425
           V +L+ACSHAGL+E+G  +F SM   YG+ P  +HY CM+DLLG+AG+ D+A++L+  M 
Sbjct: 368 VGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEME 427

Query: 426 VEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKWKDMAK 485
            E D   W  LLGACR+ R + LA+  A  ++ L P++ G Y LLSNIYAN+ KW  + +
Sbjct: 428 CEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEE 487

Query: 486 TRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLELAGYVPD 545
            R  M   G+KK PG +WIEV+++++ F +GD +HP+  E+ + L ++  +L   GYVP+
Sbjct: 488 IRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPE 547

Query: 546 TNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFCKFVSS 605
           TN+VL D++ E  +  L  HSEKLA+AFGL+ +P +  IRI KNLR+CGDCH FCK  S 
Sbjct: 548 TNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASK 607

Query: 606 IERRTIILRDANRFHHFKEGACSCRDYW 634
           +E R+I++RD  R+HHF++G CSC DYW
Sbjct: 608 LEIRSIVIRDPIRYHHFQDGKCSCGDYW 630

[Close]

BLAST of CmoCh06G004880 vs. ExPASy Swiss-Prot
Match: Q9M1V3 (Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 481.5 bits (1238), Expect = 1.5e-134
Identity = 234/561 (41.71%), Postives = 348/561 (62.03%), Query Frame = 0


Query: 74  NLFQIRQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEMTERDSYSWSVIVG 133
           NL    ++H ++   G   NL + N L+ +Y++          F  M ++D  SW+ ++ 
Sbjct: 401 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 460

Query: 134 GYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDF 193
           GYA+         +FR++ +  M +D   L  ++RA   LK +   + IHC   + GL  
Sbjct: 461 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-L 520

Query: 194 DHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMR 253
           D  +   LVD+Y +C+ +  A ++F+ +  +D+V+WT M+ + A   +  E++ LF RM 
Sbjct: 521 DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMV 580

Query: 254 DEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILGTAMIDMYAKCGSVD 313
           + G+  D VAL+ ++ A A L A+NK R IH Y+    + L+  +  A++DMYA CG + 
Sbjct: 581 ETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQ 640

Query: 314 LAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGILPNRITFVSLLYACS 373
            A+ +FD+++ K ++ +++MI AYG HG G  A+ELF  M    + P+ I+F++LLYACS
Sbjct: 641 SAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACS 700

Query: 374 HAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALELIESMTVEKDEGLW 433
           HAGL++EG+ F   M  EY + P  +HY C+VD+LGRA    EA E ++ M  E    +W
Sbjct: 701 HAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVW 760

Query: 434 GALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKWKDMAKTRDLMTKC 493
            ALL ACR H   ++ +  A  LLEL+P+NPG+ VL+SN++A  G+W D+ K R  M   
Sbjct: 761 CALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKAS 820

Query: 494 GLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLEL-AGYVPDTNYVLHD 553
           G++K PG +WIE+D K+++F+  DK+HP S EIYE L  V  KLE   GYV DT +VLH+
Sbjct: 821 GMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHN 880

Query: 554 VDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFCKFVSSIERRTII 613
           VDE  K  +L+ HSE++AIA+GL+  P    +RITKNLRVC DCHTFCK VS + RR I+
Sbjct: 881 VDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIV 940

Query: 614 LRDANRFHHFKEGACSCRDYW 634
           +RDANRFHHF+ G CSC D W
Sbjct: 941 MRDANRFHHFESGLCSCGDSW 960

[Close]

BLAST of CmoCh06G004880 vs. ExPASy Swiss-Prot
Match: O81767 (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX=3702 GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 479.2 bits (1232), Expect = 7.3e-134
Identity = 231/573 (40.31%), Postives = 356/573 (62.13%), Query Frame = 0


Query: 66  ITLLLSCRNLFQIRQ---VHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEMTE 125
           ++LL +C       +   +H +    G    L ++NKL+ LYA++G L D  ++FD M  
Sbjct: 251 VSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYV 310

Query: 126 RDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVI 185
           RD  SW+ I+  Y   +       +F+E+    +  D  TL  +      L D++  R +
Sbjct: 311 RDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSV 370

Query: 186 HCATSKCGLDFDHFVCA-SLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSS 245
              T + G   +      ++V MYA+  +++ AR +F+ +P  D+++W  ++   A+   
Sbjct: 371 QGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGF 430

Query: 246 AVESLTLFDRMRDEG-IVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILGT 305
           A E++ +++ M +EG I  ++   V+V+ AC++ GA+ +   +H  +      LDV + T
Sbjct: 431 ASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVT 490

Query: 306 AMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGILP 365
           ++ DMY KCG ++ A  +F Q+   N + W+ +IA +G+HG G KA+ LF  ML  G+ P
Sbjct: 491 SLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKP 550

Query: 366 NRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALEL 425
           + ITFV+LL ACSH+GL++EGQ  F  M  +YG+ P +KHY CMVD+ GRAG+ + AL+ 
Sbjct: 551 DHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKF 610

Query: 426 IESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKW 485
           I+SM+++ D  +WGALL ACR+H  +DL K  +  L E++P++ G++VLLSN+YA+AGKW
Sbjct: 611 IKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKW 670

Query: 486 KDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLELA 545
           + + + R +    GL+K PGW+ +EVD K+  F  G++THP   E+Y  L  +  KL++ 
Sbjct: 671 EGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMI 730

Query: 546 GYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFC 605
           GYVPD  +VL DV+++ K+ +L +HSE+LAIAF LI  P  T IRI KNLRVCGDCH+  
Sbjct: 731 GYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVT 790

Query: 606 KFVSSIERRTIILRDANRFHHFKEGACSCRDYW 634
           KF+S I  R II+RD+NRFHHFK G CSC DYW
Sbjct: 791 KFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823

[Close]

BLAST of CmoCh06G004880 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 3.6e-133
Identity = 232/617 (37.60%), Postives = 371/617 (60.13%), Query Frame = 0


Query: 28  KEASISVQFNVNNHSNEPNSSTQESQSSFLLYFHPKRFITLLLSC---RNLFQIRQVHGH 87
           KE  +     V +  + P+  T E                L+L C    +L    +VH H
Sbjct: 58  KEGKLKQAIRVLSQESSPSQQTYE---------------LLILCCGHRSSLSDALRVHRH 117

Query: 88  IASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEMTERDSYSWSVIVGGYAKVKDFSSC 147
           I  +G+ ++  +A KL+ +Y+  G+++ A ++FD+  +R  Y W+ +             
Sbjct: 118 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 177

Query: 148 FWMFRELVRCGMPLDNYTLPIVIRAC----RDLKDLQFGRVIHCATSKCGLDFDHFVCAS 207
             ++ ++ R G+  D +T   V++AC      +  L  G+ IH   ++ G     ++  +
Sbjct: 178 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTT 237

Query: 208 LVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDE--GIV 267
           LVDMYAR   ++ A  +F  MP R++V+W+ M+   A+   A E+L  F  M  E     
Sbjct: 238 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 297

Query: 268 PDKVALVTVVYACAKLGAMNKARAIHDYI--NGTRYVLDVILGTAMIDMYAKCGSVDLAR 327
           P+ V +V+V+ ACA L A+ + + IH YI   G   +L VI  +A++ MY +CG +++ +
Sbjct: 298 PNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI--SALVTMYGRCGKLEVGQ 357

Query: 328 EIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGILPNRITFVSLLYACSHAG 387
            +FD+M  ++V++W+++I++YG HG G KA+++F  ML++G  P  +TFVS+L ACSH G
Sbjct: 358 RVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEG 417

Query: 388 LIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALELIESMTVEKDEGLWGAL 447
           L+EEG+R F +MW ++G++P ++HY CMVDLLGRA R DEA ++++ M  E    +WG+L
Sbjct: 418 LVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSL 477

Query: 448 LGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKWKDMAKTRDLMTKCGLK 507
           LG+CRIH  ++LA+R +  L  L+P+N G+YVLL++IYA A  W ++ + + L+   GL+
Sbjct: 478 LGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQ 537

Query: 508 KIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLELAGYVPDTNYVLHDVDEE 567
           K+PG  W+EV  K+Y F   D+ +P   +I+  L ++ E ++  GY+P T  VL++++ E
Sbjct: 538 KLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 597

Query: 568 VKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFCKFVSSIERRTIILRDA 627
            K+ ++  HSEKLA+AFGLI      PIRITKNLR+C DCH F KF+S    + I++RD 
Sbjct: 598 EKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDV 657

Query: 628 NRFHHFKEGACSCRDYW 634
           NRFH FK G CSC DYW
Sbjct: 658 NRFHRFKNGVCSCGDYW 657

[Close]

BLAST of CmoCh06G004880 vs. ExPASy TrEMBL
Match: A0A6J1FK20 (pentatricopeptide repeat-containing protein At2g33760-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444929 PE=3 SV=1)

HSP 1 Score: 1297.3 bits (3356), Expect = 0.0e+00
Identity = 633/633 (100.00%), Postives = 633/633 (100.00%), Query Frame = 0


Query: 1   MLKSKSQIIFINNGKLRFSSASATTAVKEASISVQFNVNNHSNEPNSSTQESQSSFLLYF 60
           MLKSKSQIIFINNGKLRFSSASATTAVKEASISVQFNVNNHSNEPNSSTQESQSSFLLYF
Sbjct: 1   MLKSKSQIIFINNGKLRFSSASATTAVKEASISVQFNVNNHSNEPNSSTQESQSSFLLYF 60

Query: 61  HPKRFITLLLSCRNLFQIRQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEM 120
           HPKRFITLLLSCRNLFQIRQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEM
Sbjct: 61  HPKRFITLLLSCRNLFQIRQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEM 120

Query: 121 TERDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGR 180
           TERDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGR
Sbjct: 121 TERDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGR 180

Query: 181 VIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECS 240
           VIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECS
Sbjct: 181 VIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECS 240

Query: 241 SAVESLTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILGT 300
           SAVESLTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILGT
Sbjct: 241 SAVESLTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILGT 300

Query: 301 AMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGILP 360
           AMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGILP
Sbjct: 301 AMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGILP 360

Query: 361 NRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALEL 420
           NRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALEL
Sbjct: 361 NRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALEL 420

Query: 421 IESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKW 480
           IESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKW
Sbjct: 421 IESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKW 480

Query: 481 KDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLELA 540
           KDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLELA
Sbjct: 481 KDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLELA 540

Query: 541 GYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFC 600
           GYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFC
Sbjct: 541 GYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFC 600

Query: 601 KFVSSIERRTIILRDANRFHHFKEGACSCRDYW 634
           KFVSSIERRTIILRDANRFHHFKEGACSCRDYW
Sbjct: 601 KFVSSIERRTIILRDANRFHHFKEGACSCRDYW 633

[Close]

BLAST of CmoCh06G004880 vs. ExPASy TrEMBL
Match: A0A6J1KYT5 (pentatricopeptide repeat-containing protein At2g33760-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498794 PE=3 SV=1)

HSP 1 Score: 1258.4 bits (3255), Expect = 0.0e+00
Identity = 616/633 (97.31%), Postives = 621/633 (98.10%), Query Frame = 0


Query: 1   MLKSKSQIIFINNGKLRFSSASATTAVKEASISVQFNVNNHSNEPNSSTQESQSSFLLYF 60
           MLKSK Q IFIN+GKLRFSSASATT VKEASIS QFNVNNHSNEPNSSTQESQSSFLLYF
Sbjct: 1   MLKSKRQNIFINHGKLRFSSASATTPVKEASISSQFNVNNHSNEPNSSTQESQSSFLLYF 60

Query: 61  HPKRFITLLLSCRNLFQIRQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEM 120
           HPKRFITLLLSCRNLFQIRQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEM
Sbjct: 61  HPKRFITLLLSCRNLFQIRQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEM 120

Query: 121 TERDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGR 180
           TERD YSWSVIVGGYAKVKDFSSCF MFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGR
Sbjct: 121 TERDPYSWSVIVGGYAKVKDFSSCFSMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGR 180

Query: 181 VIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECS 240
           VIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECS
Sbjct: 181 VIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECS 240

Query: 241 SAVESLTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILGT 300
           SAVESLTLFDRMR EGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTR+ LDVILGT
Sbjct: 241 SAVESLTLFDRMRVEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRFCLDVILGT 300

Query: 301 AMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGILP 360
           AMIDMYAKCGSVDLAREIFDQMQ+KNVITWSAMIAAYGYHGQGGKAL+LFPMMLSSGILP
Sbjct: 301 AMIDMYAKCGSVDLAREIFDQMQMKNVITWSAMIAAYGYHGQGGKALKLFPMMLSSGILP 360

Query: 361 NRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALEL 420
           NRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEAL L
Sbjct: 361 NRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALGL 420

Query: 421 IESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKW 480
           IESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKW
Sbjct: 421 IESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKW 480

Query: 481 KDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLELA 540
           +DMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIY MLKRV EKLELA
Sbjct: 481 EDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYVMLKRVDEKLELA 540

Query: 541 GYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFC 600
           GYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFC
Sbjct: 541 GYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFC 600

Query: 601 KFVSSIERRTIILRDANRFHHFKEGACSCRDYW 634
           KFVSSIERRTIILRDANRFHHFKEG CSCRDYW
Sbjct: 601 KFVSSIERRTIILRDANRFHHFKEGGCSCRDYW 633

[Close]

BLAST of CmoCh06G004880 vs. ExPASy TrEMBL
Match: A0A6J1CTP5 (pentatricopeptide repeat-containing protein At2g33760-like OS=Momordica charantia OX=3673 GN=LOC111014240 PE=3 SV=1)

HSP 1 Score: 1137.1 bits (2940), Expect = 0.0e+00
Identity = 549/634 (86.59%), Postives = 585/634 (92.27%), Query Frame = 0


Query: 1   MLKSKSQIIFINNGKLRFSSASATTAVKEASISVQ-FNVNNHSNEPNSSTQESQSSFLLY 60
           ML+SK Q  F+N+GKLRF S S TT  +E S+S   F+VNN SNEPN STQESQSSFLL 
Sbjct: 1   MLRSKGQRFFVNHGKLRFFSVSETTTAEETSLSSSLFDVNNPSNEPNFSTQESQSSFLLQ 60

Query: 61  FHPKRFITLLLSCRNLFQIRQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDE 120
           F P+R+IT LLSCRNLFQIRQVH  IAS+G FRNLAIANKLLF Y Q+GALEDA +LFD+
Sbjct: 61  FDPRRYITALLSCRNLFQIRQVHARIASNGIFRNLAIANKLLFAYTQHGALEDARDLFDK 120

Query: 121 MTERDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFG 180
           MTERD YSWSVI+GGYAK+ DFSSCF MFREL RCGMP DNYTLPIVIRACRDLKDLQFG
Sbjct: 121 MTERDPYSWSVIIGGYAKIGDFSSCFGMFRELFRCGMPFDNYTLPIVIRACRDLKDLQFG 180

Query: 181 RVIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAEC 240
           R+IHCAT KCGLD+DHFVCASLVDMY+RC+VI+DARQLFDKM +RDLVTWTVM+GALAEC
Sbjct: 181 RLIHCATLKCGLDYDHFVCASLVDMYSRCRVIDDARQLFDKMHKRDLVTWTVMIGALAEC 240

Query: 241 SSAVESLTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILG 300
           SSA ESL LFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARA+HDYINGT++ LDVILG
Sbjct: 241 SSAFESLVLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAVHDYINGTKFSLDVILG 300

Query: 301 TAMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGIL 360
           TAMIDMYAKCG V+ AREIFDQMQVKNVITWSAMIAAYGYHGQG +ALELFPMMLSSGIL
Sbjct: 301 TAMIDMYAKCGDVEWAREIFDQMQVKNVITWSAMIAAYGYHGQGREALELFPMMLSSGIL 360

Query: 361 PNRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALE 420
           PNRITFVSLLYACSHAGLIEEG RFF+ M DEYGVRPDVKHYTCMVDLLGRAGRF+EAL 
Sbjct: 361 PNRITFVSLLYACSHAGLIEEGHRFFSLMSDEYGVRPDVKHYTCMVDLLGRAGRFEEALR 420

Query: 421 LIESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGK 480
           LIESMTVEKDEGLWGALLGACRIHRRLDLA+RVA SLLE+QPQNPGHYVLLSNIYANAGK
Sbjct: 421 LIESMTVEKDEGLWGALLGACRIHRRLDLAERVAKSLLEMQPQNPGHYVLLSNIYANAGK 480

Query: 481 WKDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLEL 540
           W+DMAKTRDLMTK GLKKIPGWTWIEVD KLYQFSVGDKTHPRS EIYE LKR+GEKLE 
Sbjct: 481 WEDMAKTRDLMTKGGLKKIPGWTWIEVDAKLYQFSVGDKTHPRSXEIYEKLKRLGEKLEF 540

Query: 541 AGYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTF 600
           AGYVPDTNYVLHDVDEEVKQGLL+AHSEKLAIAFGLI IP D PIRITKNLRVCGDCHTF
Sbjct: 541 AGYVPDTNYVLHDVDEEVKQGLLFAHSEKLAIAFGLIAIPQDNPIRITKNLRVCGDCHTF 600

Query: 601 CKFVSSIERRTIILRDANRFHHFKEGACSCRDYW 634
           CKFVSSIE+RTI+LRDANRFHHFK+GACSCRDYW
Sbjct: 601 CKFVSSIEQRTIVLRDANRFHHFKDGACSCRDYW 634

[Close]

BLAST of CmoCh06G004880 vs. ExPASy TrEMBL
Match: A0A6J1FEA7 (pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444929 PE=3 SV=1)

HSP 1 Score: 1072.8 bits (2773), Expect = 4.7e-310
Identity = 514/514 (100.00%), Postives = 514/514 (100.00%), Query Frame = 0


Query: 120 MTERDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFG 179
           MTERDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFG
Sbjct: 1   MTERDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFG 60

Query: 180 RVIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAEC 239
           RVIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAEC
Sbjct: 61  RVIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAEC 120

Query: 240 SSAVESLTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILG 299
           SSAVESLTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILG
Sbjct: 121 SSAVESLTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILG 180

Query: 300 TAMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGIL 359
           TAMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGIL
Sbjct: 181 TAMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGIL 240

Query: 360 PNRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALE 419
           PNRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALE
Sbjct: 241 PNRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALE 300

Query: 420 LIESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGK 479
           LIESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGK
Sbjct: 301 LIESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGK 360

Query: 480 WKDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLEL 539
           WKDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLEL
Sbjct: 361 WKDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLEL 420

Query: 540 AGYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTF 599
           AGYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTF
Sbjct: 421 AGYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTF 480

Query: 600 CKFVSSIERRTIILRDANRFHHFKEGACSCRDYW 634
           CKFVSSIERRTIILRDANRFHHFKEGACSCRDYW
Sbjct: 481 CKFVSSIERRTIILRDANRFHHFKEGACSCRDYW 514

[Close]

BLAST of CmoCh06G004880 vs. ExPASy TrEMBL
Match: A0A5D3DNV6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004080 PE=3 SV=1)

HSP 1 Score: 1067.0 bits (2758), Expect = 3.0e-308
Identity = 520/633 (82.15%), Postives = 560/633 (88.47%), Query Frame = 0


Query: 1   MLKSKSQIIFINNGKLRFSSASATTAVKEASISVQFNVNNHSNEPNSSTQESQSSFLLYF 60
           MLKSK Q IFIN+GKLRFSS         AS+S QF+VN +SNEP   TQES+SS +L++
Sbjct: 1   MLKSKCQHIFINHGKLRFSS---------ASLSWQFDVNCNSNEPTPCTQESESSHVLHY 60

Query: 61  HPKRFITLLLSCRNLFQIRQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEM 120
            PKRF   LLSCRNLFQ+RQVH  IA++GAFRNLA+ANKLLFLY + GALEDA ELFD M
Sbjct: 61  DPKRFRNSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLFLYVERGALEDAQELFDGM 120

Query: 121 TERDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGR 180
           ++RD YSWS+IVGGYAKV DF SCFWMFREL+RCG PLD+Y  PIVIRACRDLKDL+ GR
Sbjct: 121 SKRDPYSWSIIVGGYAKVGDFFSCFWMFRELLRCGTPLDDYNAPIVIRACRDLKDLKCGR 180

Query: 181 VIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECS 240
           +IHC T KCGLD+  FVCASLVDMYARCKVIEDARQ+F KM +RDL TWTVM+GALAE  
Sbjct: 181 LIHCITLKCGLDYGQFVCASLVDMYARCKVIEDARQIFVKMWKRDLATWTVMIGALAESG 240

Query: 241 SAVESLTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILGT 300
             VESL  FDRMRDEGIVPDKVALVTVVYACAKLGAMNKA+AIH YINGT Y LDVILGT
Sbjct: 241 VPVESLAFFDRMRDEGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGT 300

Query: 301 AMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGILP 360
           AMIDMYAKCGSVD AR IFD+MQV+NVITWSAMIAAYGYHGQG KALELFPMML  GILP
Sbjct: 301 AMIDMYAKCGSVDSARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLGCGILP 360

Query: 361 NRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALEL 420
           NRITFVSLLYACSHAGLIEEGQRFF+SMWDEYGV PDVKHYTCMVDLLGRAGR DEALE+
Sbjct: 361 NRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEM 420

Query: 421 IESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKW 480
           IE MTVEKDE LWGALLGACRIHRRLDLA+RVA+SL +LQ QNPGHYVLLSNIYANAGKW
Sbjct: 421 IEGMTVEKDEALWGALLGACRIHRRLDLAERVATSLHKLQSQNPGHYVLLSNIYANAGKW 480

Query: 481 KDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLELA 540
            DMAK RDLMTK GL+KIPGWTWIEV+EKLYQF VGDKTHPRSSEIY+MLKR+GEKLELA
Sbjct: 481 DDMAKIRDLMTKSGLRKIPGWTWIEVNEKLYQFGVGDKTHPRSSEIYKMLKRIGEKLELA 540

Query: 541 GYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFC 600
           GY+PDTNY LHDVDEEVKQGLLYAHSEKLAIAFGL+VI    PIRITKNLRVCGDCHTFC
Sbjct: 541 GYLPDTNYALHDVDEEVKQGLLYAHSEKLAIAFGLLVISQGYPIRITKNLRVCGDCHTFC 600

Query: 601 KFVSSIERRTIILRDANRFHHFKEGACSCRDYW 634
           KFVS IE+RTII+RDA RFHHFKEG CSCRDYW
Sbjct: 601 KFVSFIEQRTIIVRDAKRFHHFKEGVCSCRDYW 624

[Close]

BLAST of CmoCh06G004880 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 488.4 bits (1256), Expect = 8.6e-138
Identity = 232/588 (39.46%), Postives = 362/588 (61.56%), Query Frame = 0


Query: 79  RQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAH------------------------ 138
           +Q+HGH+   G   +L +   L+ +Y Q G LEDAH                        
Sbjct: 154 QQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASR 213

Query: 139 -------ELFDEMTERDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVI 198
                  +LFDE+  +D  SW+ ++ GYA+  ++     +F+++++  +  D  T+  V+
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273

Query: 199 RACRDLKDLQFGRVIHCATSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLV 258
            AC     ++ GR +H      G   +  +  +L+D+Y++C  +E A  LF+++P +D++
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333

Query: 259 TWTVMVGALAECSSAVESLTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYI 318
           +W  ++G     +   E+L LF  M   G  P+ V +++++ ACA LGA++  R IH YI
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393

Query: 319 N-GTRYVLDV-ILGTAMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGK 378
           +   + V +   L T++IDMYAKCG ++ A ++F+ +  K++ +W+AMI  +  HG+   
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453

Query: 379 ALELFPMMLSSGILPNRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMV 438
           + +LF  M   GI P+ ITFV LL ACSH+G+++ G+  F +M  +Y + P ++HY CM+
Sbjct: 454 SFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMI 513

Query: 439 DLLGRAGRFDEALELIESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPG 498
           DLLG +G F EA E+I  M +E D  +W +LL AC++H  ++L +  A +L++++P+NPG
Sbjct: 514 DLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPG 573

Query: 499 HYVLLSNIYANAGKWKDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSE 558
            YVLLSNIYA+AG+W ++AKTR L+   G+KK+PG + IE+D  +++F +GDK HPR+ E
Sbjct: 574 SYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 633

Query: 559 IYEMLKRVGEKLELAGYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIR 618
           IY ML+ +   LE AG+VPDT+ VL +++EE K+G L  HSEKLAIAFGLI     T + 
Sbjct: 634 IYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLT 693

Query: 619 ITKNLRVCGDCHTFCKFVSSIERRTIILRDANRFHHFKEGACSCRDYW 634
           I KNLRVC +CH   K +S I +R II RD  RFHHF++G CSC DYW
Sbjct: 694 IVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741

[Close]

BLAST of CmoCh06G004880 vs. TAIR 10
Match: AT2G03880.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 486.1 bits (1250), Expect = 4.3e-137
Identity = 232/568 (40.85%), Postives = 357/568 (62.85%), Query Frame = 0


Query: 66  ITLLLSCRNLFQIRQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEMTERDS 125
           I   +S R + +   +  H+  +G    + + N L+ +Y ++  L DAH+LFD+M +R+ 
Sbjct: 68  IKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNV 127

Query: 126 YSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCA 185
            SW+ ++  Y+K K       +   ++R  +  + YT   V+R+C  + D+   R++HC 
Sbjct: 128 ISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCG 187

Query: 186 TSKCGLDFDHFVCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVES 245
             K GL+ D FV ++L+D++A+    EDA  +FD+M   D + W  ++G  A+ S +  +
Sbjct: 188 IIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVA 247

Query: 246 LTLFDRMRDEGIVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILGTAMIDM 305
           L LF RM+  G + ++  L +V+ AC  L  +      H +I   +Y  D+IL  A++DM
Sbjct: 248 LELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI--VKYDQDLILNNALVDM 307

Query: 306 YAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGILPNRITF 365
           Y KCGS++ A  +F+QM+ ++VITWS MI+    +G   +AL+LF  M SSG  PN IT 
Sbjct: 308 YCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITI 367

Query: 366 VSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALELIESMT 425
           V +L+ACSHAGL+E+G  +F SM   YG+ P  +HY CM+DLLG+AG+ D+A++L+  M 
Sbjct: 368 VGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEME 427

Query: 426 VEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKWKDMAK 485
            E D   W  LLGACR+ R + LA+  A  ++ L P++ G Y LLSNIYAN+ KW  + +
Sbjct: 428 CEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEE 487

Query: 486 TRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLELAGYVPD 545
            R  M   G+KK PG +WIEV+++++ F +GD +HP+  E+ + L ++  +L   GYVP+
Sbjct: 488 IRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPE 547

Query: 546 TNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFCKFVSS 605
           TN+VL D++ E  +  L  HSEKLA+AFGL+ +P +  IRI KNLR+CGDCH FCK  S 
Sbjct: 548 TNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASK 607

Query: 606 IERRTIILRDANRFHHFKEGACSCRDYW 634
           +E R+I++RD  R+HHF++G CSC DYW
Sbjct: 608 LEIRSIVIRDPIRYHHFQDGKCSCGDYW 630

[Close]

BLAST of CmoCh06G004880 vs. TAIR 10
Match: AT4G33990.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 479.2 bits (1232), Expect = 5.2e-135
Identity = 231/573 (40.31%), Postives = 356/573 (62.13%), Query Frame = 0


Query: 66  ITLLLSCRNLFQIRQ---VHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEMTE 125
           ++LL +C       +   +H +    G    L ++NKL+ LYA++G L D  ++FD M  
Sbjct: 251 VSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYV 310

Query: 126 RDSYSWSVIVGGYAKVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVI 185
           RD  SW+ I+  Y   +       +F+E+    +  D  TL  +      L D++  R +
Sbjct: 311 RDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSV 370

Query: 186 HCATSKCGLDFDHFVCA-SLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSS 245
              T + G   +      ++V MYA+  +++ AR +F+ +P  D+++W  ++   A+   
Sbjct: 371 QGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGF 430

Query: 246 AVESLTLFDRMRDEG-IVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILGT 305
           A E++ +++ M +EG I  ++   V+V+ AC++ GA+ +   +H  +      LDV + T
Sbjct: 431 ASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVT 490

Query: 306 AMIDMYAKCGSVDLAREIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGILP 365
           ++ DMY KCG ++ A  +F Q+   N + W+ +IA +G+HG G KA+ LF  ML  G+ P
Sbjct: 491 SLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKP 550

Query: 366 NRITFVSLLYACSHAGLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALEL 425
           + ITFV+LL ACSH+GL++EGQ  F  M  +YG+ P +KHY CMVD+ GRAG+ + AL+ 
Sbjct: 551 DHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKF 610

Query: 426 IESMTVEKDEGLWGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKW 485
           I+SM+++ D  +WGALL ACR+H  +DL K  +  L E++P++ G++VLLSN+YA+AGKW
Sbjct: 611 IKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKW 670

Query: 486 KDMAKTRDLMTKCGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLELA 545
           + + + R +    GL+K PGW+ +EVD K+  F  G++THP   E+Y  L  +  KL++ 
Sbjct: 671 EGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMI 730

Query: 546 GYVPDTNYVLHDVDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFC 605
           GYVPD  +VL DV+++ K+ +L +HSE+LAIAF LI  P  T IRI KNLRVCGDCH+  
Sbjct: 731 GYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVT 790

Query: 606 KFVSSIERRTIILRDANRFHHFKEGACSCRDYW 634
           KF+S I  R II+RD+NRFHHFK G CSC DYW
Sbjct: 791 KFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823

[Close]

BLAST of CmoCh06G004880 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 476.9 bits (1226), Expect = 2.6e-134
Identity = 232/617 (37.60%), Postives = 371/617 (60.13%), Query Frame = 0


Query: 28  KEASISVQFNVNNHSNEPNSSTQESQSSFLLYFHPKRFITLLLSC---RNLFQIRQVHGH 87
           KE  +     V +  + P+  T E                L+L C    +L    +VH H
Sbjct: 58  KEGKLKQAIRVLSQESSPSQQTYE---------------LLILCCGHRSSLSDALRVHRH 117

Query: 88  IASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEMTERDSYSWSVIVGGYAKVKDFSSC 147
           I  +G+ ++  +A KL+ +Y+  G+++ A ++FD+  +R  Y W+ +             
Sbjct: 118 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 177

Query: 148 FWMFRELVRCGMPLDNYTLPIVIRAC----RDLKDLQFGRVIHCATSKCGLDFDHFVCAS 207
             ++ ++ R G+  D +T   V++AC      +  L  G+ IH   ++ G     ++  +
Sbjct: 178 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTT 237

Query: 208 LVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDE--GIV 267
           LVDMYAR   ++ A  +F  MP R++V+W+ M+   A+   A E+L  F  M  E     
Sbjct: 238 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 297

Query: 268 PDKVALVTVVYACAKLGAMNKARAIHDYI--NGTRYVLDVILGTAMIDMYAKCGSVDLAR 327
           P+ V +V+V+ ACA L A+ + + IH YI   G   +L VI  +A++ MY +CG +++ +
Sbjct: 298 PNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVI--SALVTMYGRCGKLEVGQ 357

Query: 328 EIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSSGILPNRITFVSLLYACSHAG 387
            +FD+M  ++V++W+++I++YG HG G KA+++F  ML++G  P  +TFVS+L ACSH G
Sbjct: 358 RVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEG 417

Query: 388 LIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALELIESMTVEKDEGLWGAL 447
           L+EEG+R F +MW ++G++P ++HY CMVDLLGRA R DEA ++++ M  E    +WG+L
Sbjct: 418 LVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSL 477

Query: 448 LGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKWKDMAKTRDLMTKCGLK 507
           LG+CRIH  ++LA+R +  L  L+P+N G+YVLL++IYA A  W ++ + + L+   GL+
Sbjct: 478 LGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQ 537

Query: 508 KIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLELAGYVPDTNYVLHDVDEE 567
           K+PG  W+EV  K+Y F   D+ +P   +I+  L ++ E ++  GY+P T  VL++++ E
Sbjct: 538 KLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETE 597

Query: 568 VKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFCKFVSSIERRTIILRDA 627
            K+ ++  HSEKLA+AFGLI      PIRITKNLR+C DCH F KF+S    + I++RD 
Sbjct: 598 EKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDV 657

Query: 628 NRFHHFKEGACSCRDYW 634
           NRFH FK G CSC DYW
Sbjct: 658 NRFHRFKNGVCSCGDYW 657

[Close]

BLAST of CmoCh06G004880 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 475.3 bits (1222), Expect = 7.5e-134
Identity = 231/561 (41.18%), Postives = 347/561 (61.85%), Query Frame = 0


Query: 77  QIRQVHGHIASSGAFRNLAIANKLLFLYAQYGALEDAHELFDEMTERDSYSWSVIVGGYA 136
           Q++QVH H+  +G  R+ ++  KL+ L     A+   H LF  +   D + ++ ++   +
Sbjct: 24  QLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTS 83

Query: 137 KVKDFSSCFWMFRELVRCGMPLDNYTLPIVIRACRDLKDLQFGRVIHCATSKCGLDFDHF 196
           K++    C   +R ++   +   NYT   VI++C DL  L+ G+ +HC     G   D +
Sbjct: 84  KLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTY 143

Query: 197 VCASLVDMYARCKVIEDARQLFDKMPRRDLVTWTVMVGALAECSSAVESLTLFDRMRDEG 256
           V A+LV  Y++C  +E ARQ+FD+MP + +V W  +V    +   A E++ +F +MR+ G
Sbjct: 144 VQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESG 203

Query: 257 IVPDKVALVTVVYACAKLGAMNKARAIHDYINGTRYVLDVILGTAMIDMYAKCGSVDLAR 316
             PD    V+++ ACA+ GA++    +H YI      L+V LGTA+I++Y++CG V  AR
Sbjct: 204 FEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAR 263

Query: 317 EIFDQMQVKNVITWSAMIAAYGYHGQGGKALELFPMMLSS-GILPNRITFVSLLYACSHA 376
           E+FD+M+  NV  W+AMI+AYG HG G +A+ELF  M    G +PN +TFV++L AC+HA
Sbjct: 264 EVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHA 323

Query: 377 GLIEEGQRFFASMWDEYGVRPDVKHYTCMVDLLGRAGRFDEALELIESMTV---EKDEGL 436
           GL+EEG+  +  M   Y + P V+H+ CMVD+LGRAG  DEA + I  +          L
Sbjct: 324 GLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPAL 383

Query: 437 WGALLGACRIHRRLDLAKRVASSLLELQPQNPGHYVLLSNIYANAGKWKDMAKTRDLMTK 496
           W A+LGAC++HR  DL   +A  L+ L+P NPGH+V+LSNIYA +GK  +++  RD M +
Sbjct: 384 WTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMR 443

Query: 497 CGLKKIPGWTWIEVDEKLYQFSVGDKTHPRSSEIYEMLKRVGEKLELAGYVPDTNYVLHD 556
             L+K  G++ IEV+ K Y FS+GD++H  + EIY  L+ +  + +  GY P +  V+H 
Sbjct: 444 NNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQ 503

Query: 557 VDEEVKQGLLYAHSEKLAIAFGLIVIPGDTPIRITKNLRVCGDCHTFCKFVSSIERRTII 616
           V+EE K+  L  HSEKLA+AFGL+    D  I I KNLR+C DCH+  K++S +  R I 
Sbjct: 504 VEEEEKEFALRYHSEKLAVAFGLLKTV-DVAITIVKNLRICEDCHSAFKYISIVSNRQIT 563

Query: 617 LRDANRFHHFKEGACSCRDYW 634
           +RD  RFHHF+ G+CSC DYW
Sbjct: 564 VRDKLRFHHFQNGSCSCLDYW 583

The following BLAST results are available for this feature:

BLAST of CmoCh06G004880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LN01	1.2e-136	39.46	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9SI53	6.0e-136	40.85	Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidop...	[more]
Q9M1V3	1.5e-134	41.71	Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidop...	[more]
O81767	7.3e-134	40.31	Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX...	[more]
Q9STF3	3.6e-133	37.60	Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop...	[more]

BLAST of CmoCh06G004880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FK20	0.0e+00	100.00	pentatricopeptide repeat-containing protein At2g33760-like isoform X1 OS=Cucurbi...	[more]
A0A6J1KYT5	0.0e+00	97.31	pentatricopeptide repeat-containing protein At2g33760-like isoform X1 OS=Cucurbi...	[more]
A0A6J1CTP5	0.0e+00	86.59	pentatricopeptide repeat-containing protein At2g33760-like OS=Momordica charanti...	[more]
A0A6J1FEA7	4.7e-310	100.00	pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like isofor...	[more]
A0A5D3DNV6	3.0e-308	82.15	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of CmoCh06G004880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08070.1	8.6e-138	39.46	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G03880.1	4.3e-137	40.85	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G33990.1	5.2e-135	40.31	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G46790.1	2.6e-134	37.60	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G33760.1	7.5e-134	41.18	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 393..425 e-value: 1.4E-6 score: 27.9
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 126..155 e-value: 0.0039 score: 17.3 coord: 200..225 e-value: 0.034 score: 14.4 coord: 99..123 e-value: 0.044 score: 14.1 coord: 227..257 e-value: 0.0019 score: 18.3
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 325..373 e-value: 9.1E-9 score: 35.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 401..425 e-value: 2.4E-5 score: 22.2 coord: 328..361 e-value: 2.4E-5 score: 22.2 coord: 197..226 e-value: 5.8E-4 score: 17.9 coord: 300..326 e-value: 8.5E-5 score: 20.5 coord: 227..260 e-value: 1.5E-5 score: 22.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 194..224 score: 8.834866
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 124..158 score: 9.525427
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 225..259 score: 10.939435
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 295..325 score: 8.714292
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 361..396 score: 8.758137
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 397..427 score: 9.371969
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 326..360 score: 11.268274
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 178..277 e-value: 2.2E-21 score: 78.0 coord: 31..177 e-value: 1.3E-17 score: 65.7
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 278..390 e-value: 2.4E-28 score: 101.4 coord: 391..558 e-value: 2.0E-14 score: 55.8
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 104..464
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 499..623 e-value: 8.4E-41 score: 138.8
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..606
None	No IPR available	PANTHER	PTHR47928:SF52	TRANSCRIPT PROCESSING PROTEIN, PUTATIVE-RELATED	coord: 1..606

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G004880.1	CmoCh06G004880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding