CmoCh06G004830 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G004830
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionSRP54 domain-containing protein
LocationCmo_Chr06: 2334976 .. 2335518 (-)
RNA-Seq ExpressionCmoCh06G004830
SyntenyCmoCh06G004830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAAAAAAAAAAAAAAGGACAAAAAAAAAAGAATGGCGAGCCCAGGCAGAGATGGAGGAGCTACCGGGGGTGCAGGTTCCCGGTTTCCGGCAGTAGACGTGGACAGAGAATTACATCCCGGCCATAACCAGCACGTAACTGTCGATCCCATTTCCTCTCAAGTTGCTGCATCTGTGGAAGATAAGGTAAAATTTTAGATTTTTTCTTTTAAAAAAATAATTTAATTTTAAAAATAATTATTTTTAAAAAAATTATAAACTGAAATAAATAATTTGTGGAAAATCTGACAGGAGCAGGCGAAGAGGAAAGCAACTGTGGAAGAAGAAAGAAAGCAGGCGAAGAAGAAGGATACAATGCAGACATTAAAGACGACGTTCATCGTCTCCGGCGTCGTCGCCGCCGTGGCGGTGGCGGCCTTCGTCGTTGTTAAGAAATTACGACAAAACTGATTCTCTTCTCCCTCAACTTTGCTCCTCCCTGTCTTCTCCAAATTTTTTATTTTTGTATTTTTTATTTTTTTTGCTGTGTGTTTATTACGTGG

mRNA sequence

AAGAAAAAAAAAAAAAAAGGACAAAAAAAAAAGAATGGCGAGCCCAGGCAGAGATGGAGGAGCTACCGGGGGTGCAGGTTCCCGGTTTCCGGCAGTAGACGTGGACAGAGAATTACATCCCGGCCATAACCAGCACGTAACTGTCGATCCCATTTCCTCTCAAGTTGCTGCATCTGTGGAAGATAAGGAGCAGGCGAAGAGGAAAGCAACTGTGGAAGAAGAAAGAAAGCAGGCGAAGAAGAAGGATACAATGCAGACATTAAAGACGACGTTCATCGTCTCCGGCGTCGTCGCCGCCGTGGCGGTGGCGGCCTTCGTCGTTGTTAAGAAATTACGACAAAACTGATTCTCTTCTCCCTCAACTTTGCTCCTCCCTGTCTTCTCCAAATTTTTTATTTTTGTATTTTTTATTTTTTTTGCTGTGTGTTTATTACGTGG

Coding sequence (CDS)

ATGGCGAGCCCAGGCAGAGATGGAGGAGCTACCGGGGGTGCAGGTTCCCGGTTTCCGGCAGTAGACGTGGACAGAGAATTACATCCCGGCCATAACCAGCACGTAACTGTCGATCCCATTTCCTCTCAAGTTGCTGCATCTGTGGAAGATAAGGAGCAGGCGAAGAGGAAAGCAACTGTGGAAGAAGAAAGAAAGCAGGCGAAGAAGAAGGATACAATGCAGACATTAAAGACGACGTTCATCGTCTCCGGCGTCGTCGCCGCCGTGGCGGTGGCGGCCTTCGTCGTTGTTAAGAAATTACGACAAAACTGA

Protein sequence

MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN
Homology
BLAST of CmoCh06G004830 vs. ExPASy TrEMBL
Match: A0A6J1G5S8 (uncharacterized protein LOC111451047 OS=Cucurbita moschata OX=3662 GN=LOC111451047 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60
           MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 104
           EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 103

BLAST of CmoCh06G004830 vs. ExPASy TrEMBL
Match: A0A6J1KYC8 (uncharacterized protein LOC111498680 OS=Cucurbita maxima OX=3661 GN=LOC111498680 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.6e-44
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60
           MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 104
           EEERKQAKKKDTMQTLKTTFIVSGV+AAVAVAAFVVVKKLRQN
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 103

BLAST of CmoCh06G004830 vs. ExPASy TrEMBL
Match: A0A6J1CUK2 (uncharacterized protein LOC111014362 OS=Momordica charantia OX=3673 GN=LOC111014362 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 0

Query: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60
           MASPG DGG +  AGS FPA DVDREL+PGHN+HV VDP+SS+VA S+E KEQAKRKA V
Sbjct: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKA-V 60

Query: 61  EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 104
           EEERK+AKK DTM+TLKTTFIVSGV+AAVAVAAF +VKKLR+N
Sbjct: 61  EEERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 102

BLAST of CmoCh06G004830 vs. ExPASy TrEMBL
Match: A0A6J1J505 (uncharacterized protein LOC111481798 OS=Cucurbita maxima OX=3661 GN=LOC111481798 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 0

Query: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60
           MAS  RDGG T  AGSRFP VD +REL+PGHN+ V VDPISS+ AAS+  KEQ KRKA  
Sbjct: 1   MASSDRDGGVTNAAGSRFPGVDGERELNPGHNKQVDVDPISSEAAASLVIKEQEKRKA-A 60

Query: 61  EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 104
           EEER +AKKK+ MQTLK  FIVS V+AAVAV AF +VKKLR+N
Sbjct: 61  EEERNRAKKKEAMQTLKMPFIVSSVIAAVAVVAFAIVKKLREN 102

BLAST of CmoCh06G004830 vs. ExPASy TrEMBL
Match: A0A0A0LBF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777020 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.4e-23
Identity = 63/95 (66.32%), Postives = 77/95 (81.05%), Query Frame = 0

Query: 9   GATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAK 68
           G+ G  G  FPAVDV+REL+PG N+HV VDP+SSQVA S+E KE  KRKA  +E ++  K
Sbjct: 2   GSQGRDGEGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAEDERKRAKK 61

Query: 69  KKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 104
           KK+ MQTLKTTFIVSG++AAVAVAAF +VKKLR+N
Sbjct: 62  KKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96

BLAST of CmoCh06G004830 vs. TAIR 10
Match: AT3G52620.1 (unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 8.5e-11
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 18  FPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATVEEERKQAK-KKDTMQTL 77
           FP  D + EL+PG N++  VDP+SS++A+    K        + E+R+ AK K+D  +TL
Sbjct: 8   FPEGDAEAELNPGQNKNFEVDPVSSEIASEKVQK--------IVEKRENAKAKRDGARTL 67

Query: 78  KTTFIVSGVVAAVAVAAFVVVKKLRQN 104
           K T IVS V+ AVA AAF + KKL++N
Sbjct: 68  KNTIIVSAVIVAVAGAAFAITKKLKEN 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1G5S81.2e-44100.00uncharacterized protein LOC111451047 OS=Cucurbita moschata OX=3662 GN=LOC1114510... [more]
A0A6J1KYC81.6e-4499.03uncharacterized protein LOC111498680 OS=Cucurbita maxima OX=3661 GN=LOC111498680... [more]
A0A6J1CUK21.2e-3177.67uncharacterized protein LOC111014362 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1J5051.0e-2468.93uncharacterized protein LOC111481798 OS=Cucurbita maxima OX=3661 GN=LOC111481798... [more]
A0A0A0LBF73.4e-2366.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777020 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G52620.18.5e-1144.83unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 48..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..66
NoneNo IPR availablePANTHERPTHR37741TRANSMEMBRANE PROTEINcoord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G004830.1CmoCh06G004830.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane