CmoCh06G004490 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G004490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	TRASH domain-containing protein
Location	Cmo_Chr06: 2146480 .. 2148310 (+)
RNA-Seq Expression	CmoCh06G004490
Synteny	CmoCh06G004490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAAAGAGGAAACCCTAAACCCTTCTTCTTCTTTTACAAACCGTCTATCCCTCCCGTTGGGTAGCTCGGTGTCGCCGACGCCTCTCTCCCGTTCGCCGTCTTTCTTCCGCTTGTGCGCCACAGTCTCCTTCCTAGCGCGTTTAATCTGCACTGTTTTCTACTATCTTGACTGGTAATATCCCGATCTCCATCTATGCCTTTCTTCCCACTTGAAAAACACAAATTAGAACTTGTCTAATGATAGGATGGAGGAGTTGTTTTCATTAATTCATTTGTTTTTCAACAATTTCCGAATAGCAATGGAAAGAAAAAACAGCTTTATGGCAAATTGGGACTTTTCGAAGTGTTGCAAGTCCTATTCAACTTACAAATTATCACTATATAAATCTGCGTTTTTAGTTAAAATCTAAGTACGCAGTGCGAGTTTTGCATGGTGTGGATGTATGTTAAATTTCGGAAATTGTTAGCTTTCTTAGCTGAGTTTTTTCTATGTTTTCAGTCGCCCTTCTGAACATGTAAGGTACGGTTCATTTGATTTTCTCTTTCCGGTGCATTTTGTTGCAGGAAATTTAGGCTTGCTATTTGTTCAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTGTATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGGTAAGCGTGCACTGTTGTTTTTCTTTTCTTAAAGGCGGCAAACTTTCATGCTTTGGGCTGCTTGTATTTTCTCGAGTTAAAATTTTCTTTTAGTTGCCAATCTCGTGTAATGCTTACGGAATGATATGAAAATATCTTCCTATTCTATCTCGGCTTGTTCTTGGTCCATTGTTTGCTATGCATATTAGCGTAGAAATAGATTTTTGTTCTTGTGGAGCTTTTGAATTAGTGATAGTGTGGAACCCCATGTTCCTGATATAATTTTTCTGCAGATTTTTAGATTTTGTCGGTCTAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCCCGTAAAGTTAAATGGACCAAGGCATACAGGAGGTTGCATGGAAAGGATATGACACAGGTAAACTTTATCGATCAACTTTAGGAACAAGTTGTTTTGCAACTACAAACTTTCTGATGCGTCTTTAACTGTTGTTTCATATGTATTATCCAGGATTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATACGACAGGAATCTCACAGAAGAGACATTGAGGGCTATTAAGAAGATCGACAAAGTCAGAGCCGAAAGGGAGGCAAGGCACATTGCACGCAGGTATTAAACTTCTTCCATTGCCACTCGTTTTATGCCTATATGTTTGTTGAATACTGCTAGAGGTGTAATTCGGGATTGTTGACATTTACAGGATGAAAGGAAAGAAAGGAAAGGAGCTCAAAGAGGCAAGGAAGGAATTGGAGCAGAGCATCAGTATGGTCAAACCACCTGCTCTTCTCAAGGAGGATCCTTCCCTCACTCTTCCAAAAATCCAAGTCAAGGTGGCACAATCACAAGCAGAGAAAAATCAGCCTATGGAAGAATGAGTTTGTTTCTCTCTTATGTCACTATATCAAATATTTTTGTCGTAATTATTTTTTCTCATAGCTTTAACTGCCACAATTCTTGTGCACGACAATGCGTGGTAGTTCATCCTTGTCTGTCCTACACAAGCATGGCTGTTATGTTGACGTTCTTTTGAGAGTGTTTTTCTTTAAATACAGATACTTATGAAAGATTTTCTTGGATCATCTCTTACTACTGTTTTTATTTGTATTTTTGCATATTTCTTGCTTACATTTTGTTGAAAAGGGT

mRNA sequence

AAAAGAAAGAGGAAACCCTAAACCCTTCTTCTTCTTTTACAAACCGTCTATCCCTCCCGTTGGGTAGCTCGGTGTCGCCGACGCCTCTCTCCCGTTCGCCGTCTTTCTTCCGCTTGTGCGCCACAGTCTCCTTCCTAGCGCGTTTAATCTGCACTGTTTTCTACTATCTTGACTGGAAATTTAGGCTTGCTATTTGTTCAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTGTATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGATTTTTAGATTTTGTCGGTCTAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCCCGTAAAGTTAAATGGACCAAGGCATACAGGAGGTTGCATGGAAAGGATATGACACAGGATTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATACGACAGGAATCTCACAGAAGAGACATTGAGGGCTATTAAGAAGATCGACAAAGTCAGAGCCGAAAGGGAGGCAAGGCACATTGCACGCAGGATGAAAGGAAAGAAAGGAAAGGAGCTCAAAGAGGCAAGGAAGGAATTGGAGCAGAGCATCAGTATGGTCAAACCACCTGCTCTTCTCAAGGAGGATCCTTCCCTCACTCTTCCAAAAATCCAAGTCAAGGTGGCACAATCACAAGCAGAGAAAAATCAGCCTATGGAAGAATGAGTTTGTTTCTCTCTTATGTCACTATATCAAATATTTTTGTCGTAATTATTTTTTCTCATAGCTTTAACTGCCACAATTCTTGTGCACGACAATGCGTGGTAGTTCATCCTTGTCTGTCCTACACAAGCATGGCTGTTATGTTGACGTTCTTTTGAGAGTGTTTTTCTTTAAATACAGATACTTATGAAAGATTTTCTTGGATCATCTCTTACTACTGTTTTTATTTGTATTTTTGCATATTTCTTGCTTACATTTTGTTGAAAAGGGT

Coding sequence (CDS)

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCCTCCACTGTATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCGAAGATTTTTAGATTTTGTCGGTCTAAATGCCACAAGAACTTCAAGATGAAGAGAAATCCCCGTAAAGTTAAATGGACCAAGGCATACAGGAGGTTGCATGGAAAGGATATGACACAGGATTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATACGACAGGAATCTCACAGAAGAGACATTGAGGGCTATTAAGAAGATCGACAAAGTCAGAGCCGAAAGGGAGGCAAGGCACATTGCACGCAGGATGAAAGGAAAGAAAGGAAAGGAGCTCAAAGAGGCAAGGAAGGAATTGGAGCAGAGCATCAGTATGGTCAAACCACCTGCTCTTCTCAAGGAGGATCCTTCCCTCACTCTTCCAAAAATCCAAGTCAAGGTGGCACAATCACAAGCAGAGAAAAATCAGCCTATGGAAGAATGA

Protein sequence

MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKELKEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE

Homology

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BLAST of CmoCh06G004490 vs. ExPASy Swiss-Prot
Match: O22165 (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.6e-58
Identity = 114/168 (67.86%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120
           KDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  REA+HI  R+K  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 169
            +  KEL+Q+I MV+ P            KI+V V++ ++ +N+ MEE
Sbjct: 121 NDDMKELDQNIHMVQAPG---------AQKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of CmoCh06G004490 vs. ExPASy Swiss-Prot
Match: Q86B05 (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 GN=rlp24 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-42
Identity = 80/142 (56.34%), Postives = 108/142 (76.06%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  VYPGHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120
           K+MT D T EFE+KRNRP +YDR L   T+ A+ ++ K++  RE      RM+G KG + 
Sbjct: 61  KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query: 121 KEARKELEQSISMVKPPALLKE 143
           K+  KE+ Q++S+++ P+ L +
Sbjct: 121 KQKLKEINQNLSLIRGPSALNK 142

[Close]

BLAST of CmoCh06G004490 vs. ExPASy Swiss-Prot
Match: Q3SZ12 (Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.0e-39
Identity = 74/139 (53.24%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++ +R+A+ I  R+  KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 KEAR--KELEQSISMVKPP 138
           ++ +  KE++Q+I +++ P
Sbjct: 121 QKVQDVKEVKQNIHLIRAP 137

[Close]

BLAST of CmoCh06G004490 vs. ExPASy Swiss-Prot
Match: Q9UHA3 (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.3e-39
Identity = 74/139 (53.24%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  +YPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++ +R+A+ I  R+  KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 KEAR--KELEQSISMVKPP 138
           ++ +  KE++Q+I +++ P
Sbjct: 121 QKVQDIKEVKQNIHLIRAP 137

[Close]

BLAST of CmoCh06G004490 vs. ExPASy Swiss-Prot
Match: Q7ZTZ2 (Probable ribosome biogenesis protein RLP24 OS=Danio rerio OX=7955 GN=rsl24d1 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.9e-39
Identity = 76/139 (54.68%), Postives = 111/139 (79.86%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS+ VYPGHG+ FVRND K+FRFCRSKCHKNFK KRNPRK +WTKA+R+  G
Sbjct: 1   MRIEKCYFCSAPVYPGHGMMFVRNDCKVFRFCRSKCHKNFKKKRNPRKTRWTKAFRKSAG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120
           K++T D++ EFE++RN P +Y+R L  +T+ A++K++ ++ +R+AR I  R+  KKGKEL
Sbjct: 61  KELTVDNSLEFEKRRNTPVKYNRELWSKTVEAMRKVESIKHKRQARFIMNRL--KKGKEL 120

Query: 121 KEAR--KELEQSISMVKPP 138
           ++A    E++++I ++K P
Sbjct: 121 EKAADISEVKKNIHLIKAP 137

[Close]

BLAST of CmoCh06G004490 vs. ExPASy TrEMBL
Match: A0A6J1KWV2 (probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111498315 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 9.2e-87
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120

Query: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 169
           KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE
Sbjct: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 168

[Close]

BLAST of CmoCh06G004490 vs. ExPASy TrEMBL
Match: A0A6J1GEZ5 (probable ribosome biogenesis protein RLP24 OS=Cucurbita moschata OX=3662 GN=LOC111453564 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 9.2e-87
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120

Query: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 169
           KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE
Sbjct: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 168

[Close]

BLAST of CmoCh06G004490 vs. ExPASy TrEMBL
Match: A0A6J1D3M8 (probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC111017299 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.7e-80
Identity = 154/168 (91.67%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRL+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRA+RE+RHIARRM+GKKGKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKGKEL 120

Query: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 169
           KEARKEL+QSIS+VK P++LKEDPSLTLPKI+VKVAQSQAE+NQ ME+
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEQ 168

[Close]

BLAST of CmoCh06G004490 vs. ExPASy TrEMBL
Match: A0A6J1C1W9 (probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC111007521 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.9e-79
Identity = 153/168 (91.07%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSST+YPGHGIQFVRNDAKIF+FCRSKCHKNFKMKRNPRKVKWTKAYRRL+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFKFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRA+RE+RHIARRM+GKK KEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKAKEL 120

Query: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 169
           KEARKEL+QSIS+VK P++LKEDPSLTLPKI+VKVAQSQAE+NQ MEE
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEE 168

[Close]

BLAST of CmoCh06G004490 vs. ExPASy TrEMBL
Match: A0A6J1ILW2 (probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111476784 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 6.0e-78
Identity = 151/168 (89.88%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERE+RHIARRM+GKK KEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 169
           +EA+KEL+QSIS+VK P  LKEDPSLTLPKI+V V  SQAE+NQ MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKVSVEPSQAEQNQSMEE 168

[Close]

BLAST of CmoCh06G004490 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 224.9 bits (572), Expect = 4.7e-59
Identity = 114/168 (67.86%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120
           KDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  REA+HI  R+K  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 169
            +  KEL+Q+I MV+ P            KI+V V++ ++ +N+ MEE
Sbjct: 121 NDDMKELDQNIHMVQAPG---------AQKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of CmoCh06G004490 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 224.9 bits (572), Expect = 4.7e-59
Identity = 114/168 (67.86%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120
           KDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  REA+HI  R+K  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 169
            +  KEL+Q+I MV+ P            KI+V V++ ++ +N+ MEE
Sbjct: 121 NDDMKELDQNIHMVQAPG---------AQKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of CmoCh06G004490 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-13
Identity = 47/130 (36.15%), Postives = 70/130 (53.85%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    +YPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAI--KKIDKVRAEREARHIARR---MKGK 120
           KD  Q++     R   +P  Y R++   TL  I  K+ +K      AR  A R    + K
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 121 KGKELKEARK 126
           K K+ K+A+K
Sbjct: 123 KTKDEKKAKK 130

[Close]

BLAST of CmoCh06G004490 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-13
Identity = 47/130 (36.15%), Postives = 70/130 (53.85%), Query Frame = 0


Query: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    +YPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAI--KKIDKVRAEREARHIARR---MKGK 120
           KD  Q++     R   +P  Y R++   TL  I  K+ +K      AR  A R    + K
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 121 KGKELKEARK 126
           K K+ K+A+K
Sbjct: 123 KTKDEKKAKK 130

The following BLAST results are available for this feature:

BLAST of CmoCh06G004490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22165	6.6e-58	67.86	Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q86B05	1.3e-42	56.34	Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 ...	[more]
Q3SZ12	4.0e-39	53.24	Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2...	[more]
Q9UHA3	5.3e-39	53.24	Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE...	[more]
Q7ZTZ2	6.9e-39	54.68	Probable ribosome biogenesis protein RLP24 OS=Danio rerio OX=7955 GN=rsl24d1 PE=...	[more]

BLAST of CmoCh06G004490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KWV2	9.2e-87	100.00	probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GEZ5	9.2e-87	100.00	probable ribosome biogenesis protein RLP24 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1D3M8	3.7e-80	91.67	probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1C1W9	1.9e-79	91.07	probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1ILW2	6.0e-78	89.88	probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of CmoCh06G004490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44860.1	4.7e-59	67.86	Ribosomal protein L24e family protein	[more]
AT2G44860.2	4.7e-59	67.86	Ribosomal protein L24e family protein	[more]
AT3G53020.1	1.0e-13	36.15	Ribosomal protein L24e family protein	[more]
AT2G36620.1	1.7e-13	36.15	ribosomal protein L24	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 6..44 e-value: 7.0E-12 score: 55.5
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 1..68 e-value: 9.6E-35 score: 120.4
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 1..65 e-value: 5.9E-34 score: 116.1
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 1..168
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 1..54 e-value: 2.04284E-30 score: 103.036
None	No IPR available	PANTHER	PTHR10792:SF36	BNAA04G10330D PROTEIN	coord: 1..168
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 4..56
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 8..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G004490.1	CmoCh06G004490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003824	catalytic activity