CmoCh06G004280 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G004280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	homeobox-leucine zipper protein ATHB-22-like
Location	Cmo_Chr06: 2055143 .. 2056848 (-)
RNA-Seq Expression	CmoCh06G004280
Synteny	CmoCh06G004280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATTTGTAGCTTCAATTCCCACTCAAAACCCTCACTTCCATCTTCAACATTTGAAGCTAATCTGATCGGGAAGTTTCACCGGAGACCGGAAAACATGGAGTGGGCCACCGGAAGTTTCAGACCCTTTGTTTCTCGAGCGCCGGAATCTTCATTTGGGTTTCTCTATAACTATAATCTTGAACAGTATCAGGGTAATATTCAGTGTTCTTGAGGGTTTTTTTTTTTTTTTTTTTTAATGAATTTGTTCTAGTGGTTATAAACTTGAAAATAATGACACCCAGATCAGAAAAATCTCATCTTTCCACTTTTTAAGGTGTTTTTTTTATAAAAAAATTGTTCTTTTTTGTGTTTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTAATGAATTTGTTGTTTTGTTTATTTGATTTGTTCTAGTGGTTATAAACTTAAAAATAATGACACCCAGATCAGAAAAATCTGATATTTCCACTTTTTTTTTTTTTAAATTGTTCTTTTTTTTTGTGTTTTTTTCTTTCTTTTTCCCGACAAGTAACTGTCACTAAACGAACGGATAATCGAAGATCTGAAACGGAGGTGGTTTTTTTAACGAATGTTTCATGTTTTTCGAACATGATTTTCTTGCAGATCCATGGAGGATATAATTAATTATATAAAATAATTGAAAGATTTGTAGAGTTTTGTTAATCTTGTCTCTGGGGTTTTGCTTCCATGAGCAGGCATGGATGTGAAGCATTCGGCGATGGCGGGGGCGTCGGAGACGGTGCTGCAAGGGCTGGTTCCAGGGATGGACATGAACAGCTATGGAAATTTGGAGAAGAAGAAGCGGCTGAGCAGCGAGCAGCTCGACTCACTCGAACAAAGCTTCCAGGAGGAGATCAAGCTCGATCCCGACCGGAAGCAGAAGCTGGCCAAGGAGCTCGGTCTGCAGCCGCGCCAAATCGCTGTTTGGTTTCAGAACCGCCGTGCGCGGTGGAAGGCGAAGCAACTCGAGCACCTCTACGACACTCTCAAACAAGAGTTCGATGCCATTTCTAGAGAGAAACATAAGCTTCAAGAGGAGGTATGCTTTTTTTCCCTTGATCTATGAAGTTTAATTTTTTTTTTCAAATCTTTTTAAGATCTCAACTTAATTAGTGAACTAAATTATGGGCTTTTTATAACAAAATTACTTGTAATATATCTCATAAATCATATAAGTGCTTTTTAATCATAAAAAGTACTTCAGCTTTAGAGAATTGAATTAGGGTTTGTCTATACTTGATTCGATCTTGAATATATCTCATAAATCGTTCGTTTTTACACAATTTCGTTGCATTTGAAATAGAAAGTTCGGAGCTTTTTTAGTCAATGTGATTGGCAGTTTTGAACCGTTGAATGTAGAAAAGATGAATATCGTCTTTAACCCTTGTAGGTAATGAAACTGAAAAGCATGCTGAGAGAGCTTCAAACTGCGAGGAACCAAGTGTCAACGGTGTACACTGAATTGTCGGGGGAGGAGACGGTGGAGAGCACCTCGGTCGGAGCTGGCTGCTCGAGCAAGCCGAGTGCGGCGGCGGTGGCAGCAGCAGCAGCAAACCAATACCCGACGCCACCGGAGCAGTGCAACTATGTGTTCAACACTGAGGAGTACAACCCCATGTCTCCAACATTCTGGGGGACGCTCCCATCGTCTTATCATCCCCAGTAA

mRNA sequence

CTATTTGTAGCTTCAATTCCCACTCAAAACCCTCACTTCCATCTTCAACATTTGAAGCTAATCTGATCGGGAAGTTTCACCGGAGACCGGAAAACATGGAGTGGGCCACCGGAAGTTTCAGACCCTTTGTTTCTCGAGCGCCGGAATCTTCATTTGGGTTTCTCTATAACTATAATCTTGAACAGTATCAGGGCATGGATGTGAAGCATTCGGCGATGGCGGGGGCGTCGGAGACGGTGCTGCAAGGGCTGGTTCCAGGGATGGACATGAACAGCTATGGAAATTTGGAGAAGAAGAAGCGGCTGAGCAGCGAGCAGCTCGACTCACTCGAACAAAGCTTCCAGGAGGAGATCAAGCTCGATCCCGACCGGAAGCAGAAGCTGGCCAAGGAGCTCGGTCTGCAGCCGCGCCAAATCGCTGTTTGGTTTCAGAACCGCCGTGCGCGGTGGAAGGCGAAGCAACTCGAGCACCTCTACGACACTCTCAAACAAGAGTTCGATGCCATTTCTAGAGAGAAACATAAGCTTCAAGAGGAGGTAATGAAACTGAAAAGCATGCTGAGAGAGCTTCAAACTGCGAGGAACCAAGTGTCAACGGTGTACACTGAATTGTCGGGGGAGGAGACGGTGGAGAGCACCTCGGTCGGAGCTGGCTGCTCGAGCAAGCCGAGTGCGGCGGCGGTGGCAGCAGCAGCAGCAAACCAATACCCGACGCCACCGGAGCAGTGCAACTATGTGTTCAACACTGAGGAGTACAACCCCATGTCTCCAACATTCTGGGGGACGCTCCCATCGTCTTATCATCCCCAGTAA

Coding sequence (CDS)

ATGGAGTGGGCCACCGGAAGTTTCAGACCCTTTGTTTCTCGAGCGCCGGAATCTTCATTTGGGTTTCTCTATAACTATAATCTTGAACAGTATCAGGGCATGGATGTGAAGCATTCGGCGATGGCGGGGGCGTCGGAGACGGTGCTGCAAGGGCTGGTTCCAGGGATGGACATGAACAGCTATGGAAATTTGGAGAAGAAGAAGCGGCTGAGCAGCGAGCAGCTCGACTCACTCGAACAAAGCTTCCAGGAGGAGATCAAGCTCGATCCCGACCGGAAGCAGAAGCTGGCCAAGGAGCTCGGTCTGCAGCCGCGCCAAATCGCTGTTTGGTTTCAGAACCGCCGTGCGCGGTGGAAGGCGAAGCAACTCGAGCACCTCTACGACACTCTCAAACAAGAGTTCGATGCCATTTCTAGAGAGAAACATAAGCTTCAAGAGGAGGTAATGAAACTGAAAAGCATGCTGAGAGAGCTTCAAACTGCGAGGAACCAAGTGTCAACGGTGTACACTGAATTGTCGGGGGAGGAGACGGTGGAGAGCACCTCGGTCGGAGCTGGCTGCTCGAGCAAGCCGAGTGCGGCGGCGGTGGCAGCAGCAGCAGCAAACCAATACCCGACGCCACCGGAGCAGTGCAACTATGTGTTCAACACTGAGGAGTACAACCCCATGTCTCCAACATTCTGGGGGACGCTCCCATCGTCTTATCATCCCCAGTAA

Protein sequence

MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQGMDVKHSAMAGASETVLQGLVPGMDMNSYGNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEETVESTSVGAGCSSKPSAAAVAAAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGTLPSSYHPQ

Homology

[Close]

BLAST of CmoCh06G004280 vs. ExPASy Swiss-Prot
Match: Q9LZR0 (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana OX=3702 GN=ATHB-51 PE=2 SV=2)

HSP 1 Score: 156.0 bits (393), Expect = 5.3e-37
Identity = 104/199 (52.26%), Postives = 133/199 (66.83%), Query Frame = 0


Query: 1   MEWATGSFRPFVSRA------PE-SSFGFLYNYNLEQYQGMDVKHSAMAGASETVLQGLV 60
           MEW+T S    V  A      PE SSF  L+++N + Y G    +S   G ++T     V
Sbjct: 1   MEWSTTSNVENVRVAFMPPPWPESSSFNSLHSFNFDPYAG----NSYTPGDTQTGPVISV 60

Query: 61  PGMD--MNSY------GNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPR 120
           P  +  MN+Y        + KKKRL+S QL SLE+SFQEEIKLD DRK KL++ELGLQPR
Sbjct: 61  PESEKIMNAYRFPNNNNEMIKKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPR 120

Query: 121 QIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQV 180
           QIAVWFQNRRARWKAKQLE LYD+L+QE+D +SREK  L +EV KL+++LR+    + Q+
Sbjct: 121 QIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHDEVKKLRALLRDQGLIKKQI 180

Query: 181 STVYTELSGEE-TVESTSV 184
           S    ++SGEE TVE +SV
Sbjct: 181 SAGTIKVSGEEDTVEISSV 195

[Close]

BLAST of CmoCh06G004280 vs. ExPASy Swiss-Prot
Match: Q4PSR7 (Homeobox-leucine zipper protein ATHB-22 OS=Arabidopsis thaliana OX=3702 GN=ATHB-22 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.0e-32
Identity = 88/166 (53.01%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 11  FVSRAPESSFGFLYNYNLEQYQGMDVKH--SAMAGASETVLQGLVP--------GMDMNS 70
           F+  A  SSF   + YN + + G         M GA + +L   VP        G + NS
Sbjct: 8   FIDGASSSSFISPF-YNFDHFSGNQDNRCLGTMMGAQQDILH--VPLAMVESGYGEESNS 67

Query: 71  Y-GNLEKKKRLSSEQLDSLEQSFQEEI--------KLDPDRKQKLAKELGLQPRQIAVWF 130
           + G  +KKK+++SEQL  LE+SFQEEI        KL+PDRK KL+KELGLQPRQIAVWF
Sbjct: 68  FNGQEKKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIAVWF 127

Query: 131 QNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRE 158
           QNR+ARWK KQLEHLY++L+QEFD +SREK  LQEE+++LKSM+RE
Sbjct: 128 QNRKARWKNKQLEHLYESLRQEFDIVSREKELLQEELIQLKSMIRE 170

[Close]

BLAST of CmoCh06G004280 vs. ExPASy Swiss-Prot
Match: A2X980 (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica OX=39946 GN=HOX16 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-22
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 65  EKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKAKQLE 124
           EKK+RL+ EQ+  LE+SF+EE KL+P+RK +LA++LGLQPRQ+AVWFQNRRARWK KQLE
Sbjct: 78  EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLE 137

Query: 125 HLYDTLKQEFDAIS-------REKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEET 184
             +D LK  FDA+        ++ H+L  +VM L   L+E +T     +    ++ G   
Sbjct: 138 RDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKETTTEGSAGAAVDVPGLPA 197

Query: 185 VESTSVGAGCSSKPSAAAVAAAAANQ 204
                V    + +P+    AAA   Q
Sbjct: 198 AADVKVAVPDAEEPALEEAAAAFEEQ 223

[Close]

BLAST of CmoCh06G004280 vs. ExPASy Swiss-Prot
Match: Q6YWR4 (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX16 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-22
Identity = 64/146 (43.84%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 65  EKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKAKQLE 124
           EKK+RL+ EQ+  LE+SF+EE KL+P+RK +LA++LGLQPRQ+AVWFQNRRARWK KQLE
Sbjct: 76  EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLE 135

Query: 125 HLYDTLKQEFDAIS-------REKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEET 184
             +D LK  FDA+        ++ H+L  +VM L   L+E +T     +    ++ G   
Sbjct: 136 RDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKETTTEGSAGAAVDVPGLPA 195

Query: 185 VESTSVGAGCSSKPSAAAVAAAAANQ 204
                V    + +P+    AAA   Q
Sbjct: 196 AADVKVAVPDAEEPALEEAAAAFEEQ 221

[Close]

BLAST of CmoCh06G004280 vs. ExPASy Swiss-Prot
Match: P46667 (Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana OX=3702 GN=ATHB-5 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-21
Identity = 54/99 (54.55%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 65  EKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKAKQLE 124
           EKK+RL  EQ+ +LE++F+ + KL+P+RK KLA+ELGLQPRQ+A+WFQNRRARWK KQLE
Sbjct: 71  EKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLE 130

Query: 125 HLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARN 164
             Y  LK  FDA+ R +  LQ +   L   ++EL+   N
Sbjct: 131 RDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKLN 169

[Close]

BLAST of CmoCh06G004280 vs. ExPASy TrEMBL
Match: A0A6J1FX30 (homeobox-leucine zipper protein ATHB-22-like OS=Cucurbita moschata OX=3662 GN=LOC111449045 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.0e-127
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQGMDVKHSAMAGASETVLQGLVPGMDMNS 60
           MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQGMDVKHSAMAGASETVLQGLVPGMDMNS
Sbjct: 1   MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQGMDVKHSAMAGASETVLQGLVPGMDMNS 60

Query: 61  YGNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKA 120
           YGNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKA
Sbjct: 61  YGNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKA 120

Query: 121 KQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEETVES 180
           KQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEETVES
Sbjct: 121 KQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEETVES 180

Query: 181 TSVGAGCSSKPSAAAVAAAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGTLPSSYHPQ 239
           TSVGAGCSSKPSAAAVAAAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGTLPSSYHPQ
Sbjct: 181 TSVGAGCSSKPSAAAVAAAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGTLPSSYHPQ 238

[Close]

BLAST of CmoCh06G004280 vs. ExPASy TrEMBL
Match: A0A6J1L311 (homeobox-leucine zipper protein ATHB-22-like OS=Cucurbita maxima OX=3661 GN=LOC111498652 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 2.2e-126
Identity = 236/238 (99.16%), Postives = 237/238 (99.58%), Query Frame = 0


Query: 1   MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQGMDVKHSAMAGASETVLQGLVPGMDMNS 60
           MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQG+DVKHSAMAGASETVLQGLVPGMDMNS
Sbjct: 1   MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQGIDVKHSAMAGASETVLQGLVPGMDMNS 60

Query: 61  YGNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKA 120
           YGNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKA
Sbjct: 61  YGNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKA 120

Query: 121 KQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEETVES 180
           KQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEETVES
Sbjct: 121 KQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEETVES 180

Query: 181 TSVGAGCSSKPSAAAVAAAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGTLPSSYHPQ 239
           TSVGAGCSSKPSAAAVA AAANQYPTPPEQCNYVFNTEEYNPMSPTFWGTLPSSYHPQ
Sbjct: 181 TSVGAGCSSKPSAAAVAEAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGTLPSSYHPQ 238

[Close]

BLAST of CmoCh06G004280 vs. ExPASy TrEMBL
Match: A0A0A0LED8 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G748220 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 9.9e-119
Identity = 224/240 (93.33%), Postives = 231/240 (96.25%), Query Frame = 0


Query: 1   MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQGMDVKHSAMAGASETVLQGLVPGMDMNS 60
           MEWATGSFRPFVSRAPESSFGFLYNYNLEQ+QG+DVKHSAMAGASETVLQGLVPGMDMNS
Sbjct: 1   MEWATGSFRPFVSRAPESSFGFLYNYNLEQFQGVDVKHSAMAGASETVLQGLVPGMDMNS 60

Query: 61  YGNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKA 120
           YGNLEKKKRLSSEQL+SLE+SFQEEIKLDPDRKQKL+KELGLQPRQIAVWFQNRRARWKA
Sbjct: 61  YGNLEKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWKA 120

Query: 121 KQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEETVES 180
           KQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQ ARNQVSTVYT+LSGEETVES
Sbjct: 121 KQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQAARNQVSTVYTDLSGEETVES 180

Query: 181 TSVGAGCSSKPS--AAAVAAAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGTLPSSYHPQ 239
           TSVGAGCSSKP   AAA A AAAN Y TPPEQCNYVFNTEEYNPMSP FWG+LPSSYHPQ
Sbjct: 181 TSVGAGCSSKPRPVAAAAAVAAANHYTTPPEQCNYVFNTEEYNPMSPAFWGSLPSSYHPQ 240

[Close]

BLAST of CmoCh06G004280 vs. ExPASy TrEMBL
Match: A0A1S3B777 (homeobox-leucine zipper protein ATHB-22-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486558 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 9.9e-119
Identity = 224/240 (93.33%), Postives = 231/240 (96.25%), Query Frame = 0


Query: 1   MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQGMDVKHSAMAGASETVLQGLVPGMDMNS 60
           MEWATGSFRPFVSRAPESSFGFLYNYNLEQ+QG+DVKHSAMAGASETVLQGLVPGMDMNS
Sbjct: 1   MEWATGSFRPFVSRAPESSFGFLYNYNLEQFQGVDVKHSAMAGASETVLQGLVPGMDMNS 60

Query: 61  YGNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKA 120
           YGNLEKKKRLSSEQL+SLE+SFQEEIKLDPDRKQKL+KELGLQPRQIAVWFQNRRARWKA
Sbjct: 61  YGNLEKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWKA 120

Query: 121 KQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEETVES 180
           KQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQ ARNQVSTVYT+LSGEETVES
Sbjct: 121 KQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQAARNQVSTVYTDLSGEETVES 180

Query: 181 TSVGAGCSSKPS--AAAVAAAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGTLPSSYHPQ 239
           TSVGAGCSSKP   AAA A AAAN Y TPPEQCNYVFNTEEYNPMSP FWG+LPSSYHPQ
Sbjct: 181 TSVGAGCSSKPRPVAAAAAVAAANHYTTPPEQCNYVFNTEEYNPMSPAFWGSLPSSYHPQ 240

[Close]

BLAST of CmoCh06G004280 vs. ExPASy TrEMBL
Match: A0A6J1F4W2 (homeobox-leucine zipper protein ATHB-22-like OS=Cucurbita moschata OX=3662 GN=LOC111442145 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.1e-117
Identity = 220/239 (92.05%), Postives = 231/239 (96.65%), Query Frame = 0


Query: 1   MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQGMDVKHSAMAGASETVLQGLVPGMDMNS 60
           MEWATGSFRPF+SR PESSFGFLYNYNLEQYQG+DVKHSAMAG SETVLQGLVPGMDMNS
Sbjct: 1   MEWATGSFRPFLSRPPESSFGFLYNYNLEQYQGIDVKHSAMAGTSETVLQGLVPGMDMNS 60

Query: 61  YGNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKA 120
           YGNL+KKKRLSSEQL+SLE+SFQEEIKLDP+RKQKL+KELGLQPRQIAVWFQNRRARWKA
Sbjct: 61  YGNLDKKKRLSSEQLESLERSFQEEIKLDPNRKQKLSKELGLQPRQIAVWFQNRRARWKA 120

Query: 121 KQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEETVES 180
           KQLEHLYDTLKQEFDAISREKHKLQEEV+KLKSMLRELQ ARNQVSTVYT+LSGEETVES
Sbjct: 121 KQLEHLYDTLKQEFDAISREKHKLQEEVIKLKSMLRELQAARNQVSTVYTDLSGEETVES 180

Query: 181 TSVGAGCSSKPSA-AAVAAAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGTLPSSYHPQ 239
           TSVGAGCSSKP A A  AAAAANQYPTPPEQCNYVFNTEEYNPMSPTFWG+LP +YHPQ
Sbjct: 181 TSVGAGCSSKPRAVATAAAAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGSLPPTYHPQ 239

[Close]

BLAST of CmoCh06G004280 vs. TAIR 10
Match: AT5G03790.1 (homeobox 51 )

HSP 1 Score: 156.0 bits (393), Expect = 3.8e-38
Identity = 104/199 (52.26%), Postives = 133/199 (66.83%), Query Frame = 0


Query: 1   MEWATGSFRPFVSRA------PE-SSFGFLYNYNLEQYQGMDVKHSAMAGASETVLQGLV 60
           MEW+T S    V  A      PE SSF  L+++N + Y G    +S   G ++T     V
Sbjct: 1   MEWSTTSNVENVRVAFMPPPWPESSSFNSLHSFNFDPYAG----NSYTPGDTQTGPVISV 60

Query: 61  PGMD--MNSY------GNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPR 120
           P  +  MN+Y        + KKKRL+S QL SLE+SFQEEIKLD DRK KL++ELGLQPR
Sbjct: 61  PESEKIMNAYRFPNNNNEMIKKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPR 120

Query: 121 QIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQV 180
           QIAVWFQNRRARWKAKQLE LYD+L+QE+D +SREK  L +EV KL+++LR+    + Q+
Sbjct: 121 QIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHDEVKKLRALLRDQGLIKKQI 180

Query: 181 STVYTELSGEE-TVESTSV 184
           S    ++SGEE TVE +SV
Sbjct: 181 SAGTIKVSGEEDTVEISSV 195

[Close]

BLAST of CmoCh06G004280 vs. TAIR 10
Match: AT2G36610.1 (homeobox protein 22 )

HSP 1 Score: 141.7 bits (356), Expect = 7.4e-34
Identity = 88/166 (53.01%), Postives = 112/166 (67.47%), Query Frame = 0


Query: 11  FVSRAPESSFGFLYNYNLEQYQGMDVKH--SAMAGASETVLQGLVP--------GMDMNS 70
           F+  A  SSF   + YN + + G         M GA + +L   VP        G + NS
Sbjct: 8   FIDGASSSSFISPF-YNFDHFSGNQDNRCLGTMMGAQQDILH--VPLAMVESGYGEESNS 67

Query: 71  Y-GNLEKKKRLSSEQLDSLEQSFQEEI--------KLDPDRKQKLAKELGLQPRQIAVWF 130
           + G  +KKK+++SEQL  LE+SFQEEI        KL+PDRK KL+KELGLQPRQIAVWF
Sbjct: 68  FNGQEKKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIAVWF 127

Query: 131 QNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRE 158
           QNR+ARWK KQLEHLY++L+QEFD +SREK  LQEE+++LKSM+RE
Sbjct: 128 QNRKARWKNKQLEHLYESLRQEFDIVSREKELLQEELIQLKSMIRE 170

[Close]

BLAST of CmoCh06G004280 vs. TAIR 10
Match: AT5G65310.1 (homeobox protein 5 )

HSP 1 Score: 105.1 bits (261), Expect = 7.7e-23
Identity = 54/99 (54.55%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 65  EKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKAKQLE 124
           EKK+RL  EQ+ +LE++F+ + KL+P+RK KLA+ELGLQPRQ+A+WFQNRRARWK KQLE
Sbjct: 71  EKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLE 130

Query: 125 HLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARN 164
             Y  LK  FDA+ R +  LQ +   L   ++EL+   N
Sbjct: 131 RDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKLN 169

[Close]

BLAST of CmoCh06G004280 vs. TAIR 10
Match: AT5G65310.2 (homeobox protein 5 )

HSP 1 Score: 105.1 bits (261), Expect = 7.7e-23
Identity = 54/99 (54.55%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 65  EKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKAKQLE 124
           EKK+RL  EQ+ +LE++F+ + KL+P+RK KLA+ELGLQPRQ+A+WFQNRRARWK KQLE
Sbjct: 53  EKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLE 112

Query: 125 HLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARN 164
             Y  LK  FDA+ R +  LQ +   L   ++EL+   N
Sbjct: 113 RDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKLN 151

[Close]

BLAST of CmoCh06G004280 vs. TAIR 10
Match: AT2G22430.1 (homeobox protein 6 )

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-21
Identity = 65/144 (45.14%), Postives = 91/144 (63.19%), Query Frame = 0


Query: 62  GNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKAK 121
           G  EKK+RLS  Q+ +LE++F+ E KL+P+RK KLA+ELGLQPRQ+AVWFQNRRARWK K
Sbjct: 58  GLSEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTK 117

Query: 122 QLEH-------LYDTLKQEFDAISREKHKLQEEVMKLKSML-----RELQTARNQVSTVY 181
           QLE         YD+L+  FD++ R+   L +E+ KLK+ L      E +   N   T  
Sbjct: 118 QLEKDYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKLNGGGGEEEEEENNAAVTTE 177

Query: 182 TELSGEETVESTSVGAGCSSKPSA 194
           +++S +E  E  S+    +  PS+
Sbjct: 178 SDISVKE--EEVSLPEKITEAPSS 199

The following BLAST results are available for this feature:

BLAST of CmoCh06G004280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZR0	5.3e-37	52.26	Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana OX=3702...	[more]
Q4PSR7	1.0e-32	53.01	Homeobox-leucine zipper protein ATHB-22 OS=Arabidopsis thaliana OX=3702 GN=ATHB-...	[more]
A2X980	6.3e-22	43.84	Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
Q6YWR4	6.3e-22	43.84	Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
P46667	1.1e-21	54.55	Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana OX=3702 GN=ATHB-5...	[more]

BLAST of CmoCh06G004280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FX30	2.0e-127	100.00	homeobox-leucine zipper protein ATHB-22-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1L311	2.2e-126	99.16	homeobox-leucine zipper protein ATHB-22-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A0A0LED8	9.9e-119	93.33	Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G748220 PE...	[more]
A0A1S3B777	9.9e-119	93.33	homeobox-leucine zipper protein ATHB-22-like isoform X2 OS=Cucumis melo OX=3656 ...	[more]
A0A6J1F4W2	1.1e-117	92.05	homeobox-leucine zipper protein ATHB-22-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of CmoCh06G004280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03790.1	3.8e-38	52.26	homeobox 51	[more]
AT2G36610.1	7.4e-34	53.01	homeobox protein 22	[more]
AT5G65310.1	7.7e-23	54.55	homeobox protein 5	[more]
AT5G65310.2	7.7e-23	54.55	homeobox protein 5	[more]
AT2G22430.1	1.4e-21	45.14	homeobox protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 61..81
None	No IPR available	COILS	Coil	Coil	coord: 113..164
None	No IPR available	GENE3D	1.10.10.60		coord: 59..126 e-value: 1.1E-20 score: 74.9
None	No IPR available	PANTHER	PTHR24326	HOMEOBOX-LEUCINE ZIPPER PROTEIN	coord: 1..221
None	No IPR available	PANTHER	PTHR24326:SF556	HOMEOBOX LEUCINE ZIPPER PROTEIN	coord: 1..221
IPR000047	Helix-turn-helix motif	PRINTS	PR00031	HTHREPRESSR	coord: 101..117 score: 55.68 coord: 92..101 score: 48.74
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 63..125 e-value: 3.4E-18 score: 76.5
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 66..119 e-value: 1.5E-17 score: 63.2
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 61..121 score: 17.345591
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 66..122 e-value: 2.37815E-17 score: 71.5056
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 121..155 e-value: 9.9E-9 score: 35.3
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 96..119
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 55..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G004280.1	CmoCh06G004280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding