CmoCh06G004160 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G004160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ATP-dependent RNA helicase drs1
Location	Cmo_Chr06: 1997972 .. 1999956 (+)
RNA-Seq Expression	CmoCh06G004160
Synteny	CmoCh06G004160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCAAAAATCACGCCGGTGGAGGAGGTGACAGCAACGCCGACGAAAGTGAACGCACCCATGAACACCGGAAGCCCCAATTGGCCAATGATTTGATCCTTTTGAGTGTTGGCATAGCGAGTAAAATCAGTGATATTCAAAGCCAAAGTGGCCCAAGCACTTATATTAGCAGTAAGGGAAGGAAAAAACAGAGCCCAGAAGCGAGGTATACGAGAACTAATTTGAAGATGATCGGAGAGGAGCGTAGCAGAGAGAAGGTGAAGAAGCGGCAGACGGCGGCGGAGAGTTCGTGTCAGTTGATATTTTTTTTAAGGTTGTCTCATTCTATTCTTGTCTCAACCTGTTGTGATGTGTACTAAGCCTTTATATTGGTGTTGTTTTTTACTCACTTATGTTAAAAAGATAAAAGTGTTTTGAATATTTACACTTAATTCCAAACCCACACCACTTGAAAACACCCTTGCAGCTAACTCGAGATTTATGTAATATAACTCCTCCAAGTTTATCTCGATGATTAGGTTCATATCATTTACCTTGCCTGATCATCTCTAAATCATTGGTGTCATGTGACCTAGTTCTTGTAAGTGTATCACAATGATTTGAATCATCAGGGTTCAGGTAATCTAGTTATGTAGACGTTGCTATCGATCCTAATCATGCATATATACAAATAGGTGACATGTGACCTCGTGAATAACCTAACTTTATGACATATACAAATCTTGTCACACGAAATCATTCACTACTTAAGTTTAGTCGATGATTATCTCGTAGTCCACATATAACCATAATCCTGTGGGAGTGACCTCTGTGTCTACTAATTATCACTGCCAAATGATAGTCAAGAATCCTCCAAATAGTACGCACATAATGATTGGATGACACCAATCATAACTAGGGCACAACCCTAAATCATCCAACGAGGCACAAAATACAAATTTTATCTACGAAGACAATTCAGTATTAAAGATTACACGATGATTTTTTCTTATTCCTGGTATTGTATACTCACAATGGGAGTGACCTCTATACCTCTATCAACTACAATGACGTTAGGTGGATCCTTGTCTTGAGATTTAGTCGACTAACTCTTGACGATCTCGATACAGTAACATAAATATACAATATGGTATGAAAAAAATGAAAAATAAATTCAAAGCTGTGGCCCAAGCCAGCTAGAAACTTTTCGCCGCTTCAACAAAACAGAGAGACCCAAGTAGCAAAATCCGGCTATAAAGGTGCTAATAAACCAAGCATTCCCGTAAATCACTGTAAACAATTGAGGAACTTTAGACACAAGCTTTACCTTCTCCAAGAATCCAGGAATCACCGGCAGAACTCCGACCACCAGCGCCGCCACAGCCGTCAAATTAAACCCACCGGAGAAGTAATAAGCCCCTGTCGGACTCGAAGAATACAAATCCTCAACAATCAGTTCCCTCCTCCGAATGAAATAGTAATCCGCCACCATGACGCCGCCAATCGGCCCCAACAGCGCCGAATACCCAACAAGCCAAGTGTAAACAAAGCTCTCACTCGAGCTCAGAAGCCTCCACGGCTGAAACACAATGCCAATCACGGCGGTGAGAAGCGCCCCTCTTGTAAAAGTGAAATAAGAAGGGTTGAGATTGACCAATGCATTCGCCGGCGCCACTACATTGGCGGCGACATTGGTGGTGACAGTGGCCAAAATAATCCCAAAAATGGCCAAAACCTTAGTGGCAAAACCCCCAATATGGCCAAGAAGATCAATTGGGTTCGAAATTATATGTCCGAAAATCACTCCGGTGGAGGAAGTGACAGCAACGCCGACGAAAGTAAACGCCCCCATGAACACCGGAAGCCCCAATTGGCCAATGATTTGATCCTTTTGAGACTTGGCATAGCGAGTAAAATCAGGGATATTCAAAGCCAAAGTGGCCCAGAAACTTATATTAGCAGTAAGGGAAGGAAAAAACAGAGCCCAAAATTCAGAGGAAGATAA

mRNA sequence

ATGCCCAAAAATCACGCCGGTGGAGGAGGTGACAGCAACGCCGACGAAAGTGAACGCACCCATGAACACCGGAAGCCCCAATTGGCCAATGATTTGATCCTTTTGAGTGTTGGCATAGCGAGTAAAATCAGTGATATTCAAAGCCAAAGTGGCCCAAGCACTTATATTAGCAGTAAGGGAAGGAAAAAACAGAGCCCAGAAGCGAGGTATACGAGAACTAATTTGAAGATGATCGGAGAGGAGCGTAGCAGAGAGAAGGTGAAGAAGCGGCAGACGGCGGCGGAGACTAGAAACTTTTCGCCGCTTCAACAAAACAGAGAGACCCAAGTAGCAAAATCCGGCTATAAAGGTGCTAATAAACCAAGCATTCCCGTAAATCACTGTAAACAATTGAGGAACTTTAGACACAAGCTTTACCTTCTCCAAGAATCCAGGAATCACCGGCAGAACTCCGACCACCAGCGCCGCCACAGCCGTCAAATTAAACCCACCGGAGAAGTAATAAGCCCCTGTCGGACTCGAAGAATACAAATCCTCAACAATCAGTTCCCTCCTCCGAATGAAATAGTAATCCGCCACCATGACGCCGCCAATCGGCCCCAACAGCGCCGAATACCCAACAAGCCAAGTGTAAACAAAGCTCTCACTCGAGCTCAGAAGCCTCCACGGCTGAAACACAATGCCAATCACGGCGGTGAGAAGCGCCCCTCTTGTAAAAGTGAAATAAGAAGGGTTGAGATTGACCAATGCATTCGCCGGCGCCACTACATTGGCGGCGACATTGGTGGTGACAGTGGCCAAAATAATCCCAAAAATGGCCAAAACCTTAGTGGCAAAACCCCCAATATGGCCAAGAAGATCAATTGGGTTCGAAATTATATGTCCGAAAATCACTCCGGTGGAGGAAGTGACAGCAACGCCGACGAAAGTAAACGCCCCCATGAACACCGGAAGCCCCAATTGGCCAATGATTTGATCCTTTTGAGACTTGGCATAGCGAGTAAAATCAGGGATATTCAAAGCCAAAGTGGCCCAGAAACTTATATTAGCAGTAAGGGAAGGAAAAAACAGAGCCCAAAATTCAGAGGAAGATAA

Coding sequence (CDS)

ATGCCCAAAAATCACGCCGGTGGAGGAGGTGACAGCAACGCCGACGAAAGTGAACGCACCCATGAACACCGGAAGCCCCAATTGGCCAATGATTTGATCCTTTTGAGTGTTGGCATAGCGAGTAAAATCAGTGATATTCAAAGCCAAAGTGGCCCAAGCACTTATATTAGCAGTAAGGGAAGGAAAAAACAGAGCCCAGAAGCGAGGTATACGAGAACTAATTTGAAGATGATCGGAGAGGAGCGTAGCAGAGAGAAGGTGAAGAAGCGGCAGACGGCGGCGGAGACTAGAAACTTTTCGCCGCTTCAACAAAACAGAGAGACCCAAGTAGCAAAATCCGGCTATAAAGGTGCTAATAAACCAAGCATTCCCGTAAATCACTGTAAACAATTGAGGAACTTTAGACACAAGCTTTACCTTCTCCAAGAATCCAGGAATCACCGGCAGAACTCCGACCACCAGCGCCGCCACAGCCGTCAAATTAAACCCACCGGAGAAGTAATAAGCCCCTGTCGGACTCGAAGAATACAAATCCTCAACAATCAGTTCCCTCCTCCGAATGAAATAGTAATCCGCCACCATGACGCCGCCAATCGGCCCCAACAGCGCCGAATACCCAACAAGCCAAGTGTAAACAAAGCTCTCACTCGAGCTCAGAAGCCTCCACGGCTGAAACACAATGCCAATCACGGCGGTGAGAAGCGCCCCTCTTGTAAAAGTGAAATAAGAAGGGTTGAGATTGACCAATGCATTCGCCGGCGCCACTACATTGGCGGCGACATTGGTGGTGACAGTGGCCAAAATAATCCCAAAAATGGCCAAAACCTTAGTGGCAAAACCCCCAATATGGCCAAGAAGATCAATTGGGTTCGAAATTATATGTCCGAAAATCACTCCGGTGGAGGAAGTGACAGCAACGCCGACGAAAGTAAACGCCCCCATGAACACCGGAAGCCCCAATTGGCCAATGATTTGATCCTTTTGAGACTTGGCATAGCGAGTAAAATCAGGGATATTCAAAGCCAAAGTGGCCCAGAAACTTATATTAGCAGTAAGGGAAGGAAAAAACAGAGCCCAAAATTCAGAGGAAGATAA

Protein sequence

MPKNHAGGGGDSNADESERTHEHRKPQLANDLILLSVGIASKISDIQSQSGPSTYISSKGRKKQSPEARYTRTNLKMIGEERSREKVKKRQTAAETRNFSPLQQNRETQVAKSGYKGANKPSIPVNHCKQLRNFRHKLYLLQESRNHRQNSDHQRRHSRQIKPTGEVISPCRTRRIQILNNQFPPPNEIVIRHHDAANRPQQRRIPNKPSVNKALTRAQKPPRLKHNANHGGEKRPSCKSEIRRVEIDQCIRRRHYIGGDIGGDSGQNNPKNGQNLSGKTPNMAKKINWVRNYMSENHSGGGSDSNADESKRPHEHRKPQLANDLILLRLGIASKIRDIQSQSGPETYISSKGRKKQSPKFRGR

Homology

[Close]

BLAST of CmoCh06G004160 vs. ExPASy TrEMBL
Match: A0A1D1XX69 (ATP-dependent RNA helicase drs1 (Fragment) OS=Anthurium amnicola OX=1678845 GN=drs1_0 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-07
Identity = 36/104 (34.62%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 207 NKPSVNKALTRAQKPPRLKHNANHGGEKRPSCKSEIRRVEIDQCIRRRHYIGGDIGGDSG 266
           ++P V++AL   ++PPRL+ + +   ++RP  + E RR ++D+ + RRH+IGGD+GGD G
Sbjct: 1   HQPGVHEALAAPEQPPRLEGHPHQRRQQRPPPERERRRAQVDERVGRRHHIGGDVGGDGG 60

Query: 267 QNNPKNGQNLSGK-TPNMAKKINWVRNYMSENHSGGGSDSNADE 310
           + + + G    G+   ++A++ + V +   E   GGG    ADE
Sbjct: 61  EGDAEYGDEADGEAAADVAEEADGVGDDPPEGGLGGGGHRQADE 104

[Close]

BLAST of CmoCh06G004160 vs. ExPASy TrEMBL
Match: A0A699GLG3 (HTH gntR-type domain-containing protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_000054 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-06
Identity = 65/271 (23.99%), Postives = 128/271 (47.23%), Query Frame = 0


Query: 94  AETRNFSPLQQNRETQVAKSGYKGANKPSIPVNHCKQLRNFRHKLYL--LQESRNHRQNS 153
           A+ R+  PL  +    V   G   ANKP + ++  K + + R +     ++++ +   ++
Sbjct: 19  ADGRHGFPLHHD---PVHHGGDGNANKPRVGIDRFKTIAHVRERRRECGIEKAGDIGHDA 78

Query: 154 DHQRRHSRQIKPTGEVISPCRTRRIQILNNQFPPPNEIVIRHHDAANRPQQRRIPNKPSV 213
           D +RR  R +     VI       +Q+ + +F   +++V+   DA NR QQRR+ ++P  
Sbjct: 79  DDERRQRRHV--PAAVIRILAAFAVQLRHIEFRLAHQVVVDDQDAGNRAQQRRVADQPRE 138

Query: 214 NKALTRAQKPPRLKHNANHGGEKRPSCKSEIRRVEIDQCIRRRHYIGGDIGGDSGQNNPK 273
           + AL R Q  PR   + N   +       +    E  + + R H +GG +  D  + + +
Sbjct: 139 HIALGRFQYLPRHHDDGNRRRQVTAGAVGDALGGEGRKIVGRSHQVGGQV--DRHRVDQQ 198

Query: 274 NGQ-NLSGKTPNMAKKINWVRNYMSENHSGGGSDSNADESKRPHEHRKPQ-LANDLILLR 333
           + Q +  G   + A +++ + + ++     G    +    ++ H HR+   LA+DL+ L 
Sbjct: 199 DDQRHQHGHAGHAAGQVHGIPDRLAVQDHRGRRHDHGHHRQQRHGHRQAHGLAHDLVALG 258

Query: 334 LGIASKIRDIQSQSGPETYISSKGRKKQSPK 361
            G A K+ ++Q Q GPE +   + R +  P+
Sbjct: 259 FGKARKVGNVQCQRGPEAHHGGQRRPEHGPE 282

The following BLAST results are available for this feature:

BLAST of CmoCh06G004160 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G004160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1D1XX69	4.1e-07	34.62	ATP-dependent RNA helicase drs1 (Fragment) OS=Anthurium amnicola OX=1678845 GN=d...	[more]
A0A699GLG3	2.0e-06	23.99	HTH gntR-type domain-containing protein OS=Tanacetum cinerariifolium OX=118510 G...	[more]

BLAST of CmoCh06G004160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..322
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 340..354
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 340..364
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 294..322
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..281
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 265..281
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 197..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G004160.1	CmoCh06G004160.1	mRNA