CmoCh06G003830 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G003830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	membrane magnesium transporter
Location	Cmo_Chr06: 1866489 .. 1867214 (+)
RNA-Seq Expression	CmoCh06G003830
Synteny	CmoCh06G003830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTCAAAGTCGGAGATCGAGTGAGATTTACATAAATCAAGCAAAAAATCGGAGTTCGTCGAGGTGAGAAAGTGGAAATTCTCTCTGGATTGTTTGTTAAATTTTGTCCCCTCGCGTTGAAATTTGAAGTCTCTTCACGTTGAAATCGTAGTTTCCGCCGTCGGGGATTTAGATCCGTCAGTCGAGATGGGAGTGGGTTTCGTGGTCGGCGTCTTCGGAGTTCTAATTCTGGCTCATGCTGCTTATTCAACCATCCAATGTACGCCCTAAACAAAGCCTATGATTATACTCTCTGATTGTATCTGTACTTGCTTCTTATTGTTGCTGCTAAACCCTCGCAATTCTTAATCGATCTTGTTCTGATTGCAGATCGGAGTTTATTGAAGATCATGCAGGAAGAGTTTTCAGGACCTCCGTTTAATGTATTCTCATCCCTCTTTTTCTTTGTTTAATCTTTAGCTTTCAGCTGGTTTCGCATTTCTCCATCGATTTGAGTTGTTTTTGAATTAAGGAAGTTTTTTCCCCAAATTTTAGGTGGCAATCGAATTGGTTCTAGGGTTGGTATTGTCCATGTGGGCTGCGCTCACCGTGCCTGGGAAGTTTCTCTCGATTAATCCAGAATCCGAGGAGAATAGGTATCTTTTCCTCTCAATTATGCTTTTTAGAATAGAATTGCACCATTAGTTTTTCCCCATTGATATGGCATTGCCCATCTCCATAAAAC

mRNA sequence

AAAATTCAAAGTCGGAGATCGAGTGAGATTTACATAAATCAAGCAAAAAATCGGAGTTCGTCGAGTTTCCGCCGTCGGGGATTTAGATCCGTCAGTCGAGATGGGAGTGGGTTTCGTGGTCGGCGTCTTCGGAGTTCTAATTCTGGCTCATGCTGCTTATTCAACCATCCAATATCGGAGTTTATTGAAGATCATGCAGGAAGAGTTTTCAGGACCTCCGTTTAATGTGGCAATCGAATTGGTTCTAGGGTTGGTATTGTCCATGTGGGCTGCGCTCACCGTGCCTGGGAAGTTTCTCTCGATTAATCCAGAATCCGAGGAGAATAGGTATCTTTTCCTCTCAATTATGCTTTTTAGAATAGAATTGCACCATTAGTTTTTCCCCATTGATATGGCATTGCCCATCTCCATAAAAC

Coding sequence (CDS)

ATGGGAGTGGGTTTCGTGGTCGGCGTCTTCGGAGTTCTAATTCTGGCTCATGCTGCTTATTCAACCATCCAATATCGGAGTTTATTGAAGATCATGCAGGAAGAGTTTTCAGGACCTCCGTTTAATGTGGCAATCGAATTGGTTCTAGGGTTGGTATTGTCCATGTGGGCTGCGCTCACCGTGCCTGGGAAGTTTCTCTCGATTAATCCAGAATCCGAGGAGAATAGGTATCTTTTCCTCTCAATTATGCTTTTTAGAATAGAATTGCACCATTAG

Protein sequence

MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFNVAIELVLGLVLSMWAALTVPGKFLSINPESEENRYLFLSIMLFRIELHH

Homology

[Close]

BLAST of CmoCh06G003830 vs. ExPASy Swiss-Prot
Match: Q2HIM5 (Membrane magnesium transporter OS=Arabidopsis thaliana OX=3702 GN=At5g03345 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-28
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1  MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFNVAIELVLGLVLSMWAALT 60
          M +GF+VGVFGVLIL+HAAYSTIQYR LLKIM+EEFS PP NV +EL++GL L MWAALT
Sbjct: 1  MNLGFLVGVFGVLILSHAAYSTIQYRGLLKIMEEEFSRPPINVILELIIGLALCMWAALT 60

Query: 61 VPGKFLSINPESEENRYLFL 81
           PGKFLSI+P+S+ENR +FL
Sbjct: 61 FPGKFLSIHPDSDENRAVFL 80

[Close]

BLAST of CmoCh06G003830 vs. ExPASy Swiss-Prot
Match: Q6TLE4 (ER membrane protein complex subunit 5 OS=Danio rerio OX=7955 GN=mmgt1 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.0e-04
Identity = 21/68 (30.88%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 6  VVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFNVAIELVLGLVLSMWAALTVPGKF 65
          VVG+ G+  LAHAA+S  Q+RS +++ ++E    P ++ ++ +L  V++ +  + + G+F
Sbjct: 9  VVGI-GLFALAHAAFSAAQHRSYMRLTEKENETLPIDIVLQTLLSFVITCYGIVHISGEF 68

Query: 66 LSINPESE 74
            ++  SE
Sbjct: 69 KDMDASSE 75

[Close]

BLAST of CmoCh06G003830 vs. ExPASy Swiss-Prot
Match: Q86J02 (ER membrane protein complex subunit 5 homolog OS=Dictyostelium discoideum OX=44689 GN=mmgt PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.0e-04
Identity = 18/58 (31.03%), Postives = 32/58 (55.17%), Query Frame = 0


Query: 2  GVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFNVAIELVLGLVLSMWAAL 60
          G+  +  V G+ I  H  YS +Q+R  L++  + F G PF++ +E ++ L L  W  +
Sbjct: 4  GIAKIFCVIGISIFLHTVYSALQHRKYLRLTDQPFEGVPFDIVVECIISLFLFAWGII 61

[Close]

BLAST of CmoCh06G003830 vs. ExPASy TrEMBL
Match: A0A6J1GWV2 (membrane magnesium transporter OS=Cucurbita moschata OX=3662 GN=LOC111457296 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.1e-33
Identity = 79/91 (86.81%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFNVAIELVLGLVLSMWAALT 60
          MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFNVAIELVLGLVLSMWAALT
Sbjct: 1  MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFNVAIELVLGLVLSMWAALT 60

Query: 61 VPGKFLSINPESEENRYLFLSIMLFRIELHH 92
          VPGKFLSINPESEENR + L   L  +  +H
Sbjct: 61 VPGKFLSINPESEENRIVSLPANLDFMVFNH 91

[Close]

BLAST of CmoCh06G003830 vs. ExPASy TrEMBL
Match: A0A6J1L020 (membrane magnesium transporter OS=Cucurbita maxima OX=3661 GN=LOC111498628 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.6e-32
Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFNVAIELVLGLVLSMWAALT 60
          MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEF+GPPFNVAIELVLGLVLSMWAALT
Sbjct: 1  MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFAGPPFNVAIELVLGLVLSMWAALT 60

Query: 61 VPGKFLSINPESEENRYLFLSIMLFRIELHH 92
          VPGKFLSINPESEENR + L   L  +  +H
Sbjct: 61 VPGKFLSINPESEENRIVSLPANLDFMVFNH 91

[Close]

BLAST of CmoCh06G003830 vs. ExPASy TrEMBL
Match: A0A5D3DND5 (Membrane magnesium transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002680 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.9e-31
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFNVAIELVLGLVLSMWAALT 60
          MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPF+VAIEL+LGLVLSMWAALT
Sbjct: 1  MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFHVAIELILGLVLSMWAALT 60

Query: 61 VPGKFLSINPESEENRYLFL 81
          VPGKF SINPE+EENR + L
Sbjct: 61 VPGKFHSINPEAEENRIVSL 80

[Close]

BLAST of CmoCh06G003830 vs. ExPASy TrEMBL
Match: A0A1S3B730 (membrane magnesium transporter OS=Cucumis melo OX=3656 GN=LOC103486496 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.9e-31
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFNVAIELVLGLVLSMWAALT 60
          MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPF+VAIEL+LGLVLSMWAALT
Sbjct: 1  MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFHVAIELILGLVLSMWAALT 60

Query: 61 VPGKFLSINPESEENRYLFL 81
          VPGKF SINPE+EENR + L
Sbjct: 61 VPGKFHSINPEAEENRIVSL 80

[Close]

BLAST of CmoCh06G003830 vs. ExPASy TrEMBL
Match: A0A0A0LFT4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740190 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.1e-31
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFNVAIELVLGLVLSMWAALT 60
          MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPF+VA+EL+LGLVLSMWAALT
Sbjct: 1  MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFHVAVELILGLVLSMWAALT 60

Query: 61 VPGKFLSINPESEENRYLFL 81
          VPGKF SINPE+EENR + L
Sbjct: 61 VPGKFHSINPEAEENRIVSL 80

[Close]

BLAST of CmoCh06G003830 vs. TAIR 10
Match: AT5G03345.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-29
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1  MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFNVAIELVLGLVLSMWAALT 60
          M +GF+VGVFGVLIL+HAAYSTIQYR LLKIM+EEFS PP NV +EL++GL L MWAALT
Sbjct: 1  MNLGFLVGVFGVLILSHAAYSTIQYRGLLKIMEEEFSRPPINVILELIIGLALCMWAALT 60

Query: 61 VPGKFLSINPESEENRYLFL 81
           PGKFLSI+P+S+ENR +FL
Sbjct: 61 FPGKFLSIHPDSDENRAVFL 80

[Close]

BLAST of CmoCh06G003830 vs. TAIR 10
Match: AT5G03345.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 155 Blast hits to 155 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 118.6 bits (296), Expect = 2.6e-27
Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1  MGVGFVVGVFGVLILAHAAYSTIQYRSLLKIMQEEFSGPPFNVAIELVLGLVLSMWAALT 60
          M +GF+VGVFGVLIL+HAAYSTIQ   LLKIM+EEFS PP NV +EL++GL L MWAALT
Sbjct: 1  MNLGFLVGVFGVLILSHAAYSTIQCIGLLKIMEEEFSRPPINVILELIIGLALCMWAALT 60

Query: 61 VPGKFLSINPESEENRYLFL 81
           PGKFLSI+P+S+ENR +FL
Sbjct: 61 FPGKFLSIHPDSDENRAVFL 80

The following BLAST results are available for this feature:

BLAST of CmoCh06G003830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2HIM5	3.9e-28	75.00	Membrane magnesium transporter OS=Arabidopsis thaliana OX=3702 GN=At5g03345 PE=3...	[more]
Q6TLE4	3.0e-04	30.88	ER membrane protein complex subunit 5 OS=Danio rerio OX=7955 GN=mmgt1 PE=2 SV=1	[more]
Q86J02	3.0e-04	31.03	ER membrane protein complex subunit 5 homolog OS=Dictyostelium discoideum OX=446...	[more]

BLAST of CmoCh06G003830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWV2	7.1e-33	86.81	membrane magnesium transporter OS=Cucurbita moschata OX=3662 GN=LOC111457296 PE=...	[more]
A0A6J1L020	1.6e-32	85.71	membrane magnesium transporter OS=Cucurbita maxima OX=3661 GN=LOC111498628 PE=3 ...	[more]
A0A5D3DND5	3.9e-31	91.25	Membrane magnesium transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B730	3.9e-31	91.25	membrane magnesium transporter OS=Cucumis melo OX=3656 GN=LOC103486496 PE=3 SV=1	[more]
A0A0A0LFT4	5.1e-31	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740190 PE=3 SV=1	[more]

BLAST of CmoCh06G003830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03345.1	2.7e-29	75.00	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT5G03345.2	2.6e-27	72.50	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018937	Membrane magnesium transporter	PFAM	PF10270	MMgT	coord: 9..60 e-value: 4.8E-8 score: 33.3
None	No IPR available	PANTHER	PTHR21181	FAMILY NOT NAMED	coord: 3..76
None	No IPR available	PANTHER	PTHR21181:SF7	MEMBRANE MAGNESIUM TRANSPORTER 1	coord: 3..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G003830.1	CmoCh06G003830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098655	cation transmembrane transport
cellular_component	GO:0005769	early endosome
cellular_component	GO:0072546	EMC complex
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0022890	inorganic cation transmembrane transporter activity