Homology
BLAST of CmoCh06G003760 vs. ExPASy Swiss-Prot
Match:
Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)
HSP 1 Score: 317.4 bits (812), Expect = 1.6e-85
Identity = 183/281 (65.12%), Postives = 210/281 (74.73%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
MA+SA+ L SLTP+TL P + +S+ F S P S L L S S F S
Sbjct: 1 MASSASSLHFLSLTPQTLPLPKP-----TSQTTSLSFFSLPPSSLNLSLSSS--SSCFSS 60
Query: 61 RFVRNVAVSSDFDQEEDVLDVDG---DDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQ 120
RFVR V + SDFDQ EDV D D ++ +++PDL++FVGNLPF+ DSA LA LFE AG
Sbjct: 61 RFVRKVTL-SDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGN 120
Query: 121 VERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDS 180
VE VEVIYDK+TGRSRGFGFVTMS+ E EAA QQFNGYEL+GR LRVN GPPP KR++S
Sbjct: 121 VEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS 180
Query: 181 SFR-SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFG 240
SFR S+ +FD+SN V+V NLAWGVD LE LF EQG VV AKVVYDRDSGRSRGFG
Sbjct: 181 SFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFG 240
Query: 241 FVTYSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
FVTYSSAEEVNNAI+SLDGVDLNGR+IRV+ AEAR PRRQF
Sbjct: 241 FVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273
BLAST of CmoCh06G003760 vs. ExPASy Swiss-Prot
Match:
Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)
HSP 1 Score: 310.1 bits (793), Expect = 2.6e-83
Identity = 178/292 (60.96%), Postives = 217/292 (74.32%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
MAASA+ L LSS PK+L F + SL S+ F+ N S+S + + SPA S
Sbjct: 1 MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVS-FSIAAKWNSPA--S 60
Query: 61 RFVRNVAVSSDFDQEED-VLDV-DGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQV 120
RF RNVA++S+F+ EED DV + S++ DL+LFVGNLPF +DSAQLA LFESAG V
Sbjct: 61 RFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 120
Query: 121 ERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDD-- 180
E VEVIYDK+TGRSRGFGFVTMS+V+E EAAAQQFNGYEL+GRPLRVN GPPPPKR+D
Sbjct: 121 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 180
Query: 181 -----SSFRSSKN------ASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVY 240
SSF SS + S + N V+V NL+WGVDD+ LE+LF EQG VV+A+V+Y
Sbjct: 181 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 240
Query: 241 DRDSGRSRGFGFVTYSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
DRDSGRS+GFGFVTY S++EV NAI+SLDG DL+GR IRV++AEAR PRRQ+
Sbjct: 241 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
BLAST of CmoCh06G003760 vs. ExPASy Swiss-Prot
Match:
P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)
HSP 1 Score: 308.1 bits (788), Expect = 9.8e-83
Identity = 179/287 (62.37%), Postives = 209/287 (72.82%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
MA+SA+ L SLTP+TL P + SL+ S+ S +S+S+ S F S
Sbjct: 1 MASSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPSSLNLSLSS-------PSSCFSS 60
Query: 61 RFVRNVAVSSDFDQEEDVLDVD---GDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQ 120
RFVR V + DFDQ EDV D D ++ +++PDL++FVGNL F+ DSA LA LFE AG
Sbjct: 61 RFVRKVTL-PDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGN 120
Query: 121 VERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDS 180
VE VEVIYDK+TGRSRGFGFVTMS+ E EAA QQFNGYEL+GR LRVN GPPP KR++S
Sbjct: 121 VEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS 180
Query: 181 SFR-------SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSG 240
SFR S+ +FD+SN V+V NLAWGVD LE LF EQG VV AKVVYDRDSG
Sbjct: 181 SFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSG 240
Query: 241 RSRGFGFVTYSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
RSRGFGFVTYSSAEEVNNAI+SLDGVDLNGR+IRV+ AEAR PRRQF
Sbjct: 241 RSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279
BLAST of CmoCh06G003760 vs. ExPASy Swiss-Prot
Match:
Q43349 (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A PE=2 SV=2)
HSP 1 Score: 285.0 bits (728), Expect = 8.9e-76
Identity = 174/344 (50.58%), Postives = 213/344 (61.92%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRS--DRVSPAF 60
M+ASA+ +LS+ PK+L + S+ P S+ F+ + + ++ S SPA
Sbjct: 1 MSASAS--SLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60
Query: 61 F-SRFVRNVAVSSDFDQEEDVLDVDGDDS------SYAPDLQLFVGNLPFTIDSAQLAGL 120
+ SRFVRNVAVSSDF+ EED + DGDDS S++PDL+LFVGNL F +DSAQLA L
Sbjct: 61 YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120
Query: 121 FESAGQVERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPP 180
FESAG VE VEVIYDK+TGRSRGFGFVTMS AE EAAAQQFNGYE EGRPLRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180
Query: 181 PKRDDSSFR--------------------------------------------------- 240
PKR++S R
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240
Query: 241 -------SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSR 278
S + S + N ++V NL+WGVDD+ LENLF EQG VV+A+V+YDRDSGRS+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300
BLAST of CmoCh06G003760 vs. ExPASy Swiss-Prot
Match:
P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)
HSP 1 Score: 276.9 bits (707), Expect = 2.4e-73
Identity = 165/295 (55.93%), Postives = 201/295 (68.14%), Query Frame = 0
Query: 3 ASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFSRF 62
+S FL ++S TP +L N FSL SS+ + SI S + P F S F
Sbjct: 7 SSLQFLFVTSQTPSSLK-PNSTLSFFSLPSSSLNLSLSSSSIG----HSASIKP-FESSF 66
Query: 63 VRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVERVE 122
VA+ SDFDQ ED ++V + ++ DL+LFVGNLPF++DSA LAGLFE AG VE VE
Sbjct: 67 STRVAL-SDFDQLEDDVEV-AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVE 126
Query: 123 VIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFRSS 182
VIYDK++GRSRGFGFVTMS E EAA QQFNGYE++GR +RVN GP P KR++SSF
Sbjct: 127 VIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGG 186
Query: 183 KNAS--------------------TFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAK 242
+ + + D+SN V+V NL+WGVDDL L+ LF EQGNVV AK
Sbjct: 187 RGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAK 246
Query: 243 VVYDRDSGRSRGFGFVTYSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
VVYDRDSGRSRGFGFVTYSSA+EVN+AI SL+G+DL+GRSIRV+ AE R PRRQF
Sbjct: 247 VVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER-PRRQF 292
BLAST of CmoCh06G003760 vs. ExPASy TrEMBL
Match:
A0A6J1F601 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442435 PE=4 SV=1)
HSP 1 Score: 537.0 bits (1382), Expect = 4.8e-149
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS
Sbjct: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
Query: 61 RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120
RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER
Sbjct: 61 RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120
Query: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180
VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180
Query: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240
SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240
Query: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF
Sbjct: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 277
BLAST of CmoCh06G003760 vs. ExPASy TrEMBL
Match:
A0A6J1KUB7 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498740 PE=4 SV=1)
HSP 1 Score: 524.2 bits (1349), Expect = 3.2e-145
Identity = 272/276 (98.55%), Postives = 272/276 (98.55%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
MAASATFL LSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALV RS RVSPAFFS
Sbjct: 1 MAASATFLPLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVFRSHRVSPAFFS 60
Query: 61 RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120
RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER
Sbjct: 61 RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120
Query: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180
VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVN GPPPPKRDDSSFR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNCGPPPPKRDDSSFR 180
Query: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240
SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240
Query: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQ 277
SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQ
Sbjct: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQ 276
BLAST of CmoCh06G003760 vs. ExPASy TrEMBL
Match:
A0A0A0LAY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1)
HSP 1 Score: 442.2 bits (1136), Expect = 1.6e-120
Identity = 233/278 (83.81%), Postives = 249/278 (89.57%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNP-SSIGFRSNPISISALVLRSDRVSPAFF 60
M+ASA LTL SLT KTLS SNPKF+LFSLNP SSI SNPISIS+ +L S RVSP F
Sbjct: 1 MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60
Query: 61 SRFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVE 120
SRFVRNVAVSSD+ QEE L+VDGDDSSYAPDL+LFVGNLPFT+DSAQLAGLFESAGQVE
Sbjct: 61 SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120
Query: 121 RVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSF 180
RVEVIYDK TGRSRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYGPPPPKRDDSSF
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180
Query: 181 RSSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVT 240
R S+NAS FDN N VHVSNLAWGVDDLTLENLFRE+GNV++AKVVYDRDSG+SRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240
Query: 241 YSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
Y+SAEEVN AIQSLDGVDL+GR IRVTQAEAR PRRQF
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278
BLAST of CmoCh06G003760 vs. ExPASy TrEMBL
Match:
A0A5A7TQA3 (29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002580 PE=4 SV=1)
HSP 1 Score: 431.8 bits (1109), Expect = 2.2e-117
Identity = 229/277 (82.67%), Postives = 245/277 (88.45%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
M+ASA LTLSSLT KTLS SNPKF+LFSLNPSS NPISIS+ VL S RVS F S
Sbjct: 1 MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
Query: 61 RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120
RFVRNVAVSSD+DQEED L+ DGDDS YAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61 RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
Query: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180
VEVIYDK TG+SRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYG PPPKRDDS FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180
Query: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240
S+NAS FDN N VHVSNLAWGVDDLTLENLFRE GNV++AKVVYDRDSGRSRGFGFVTY
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240
Query: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
+SAEEVNNAIQSL+GVDL GRSIRVTQAEA+ PRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276
BLAST of CmoCh06G003760 vs. ExPASy TrEMBL
Match:
A0A1S3B5S7 (29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 PE=4 SV=1)
HSP 1 Score: 431.8 bits (1109), Expect = 2.2e-117
Identity = 229/277 (82.67%), Postives = 245/277 (88.45%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
M+ASA LTLSSLT KTLS SNPKF+LFSLNPSS NPISIS+ VL S RVS F S
Sbjct: 1 MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
Query: 61 RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120
RFVRNVAVSSD+DQEED L+ DGDDS YAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61 RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
Query: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180
VEVIYDK TG+SRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYG PPPKRDDS FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180
Query: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240
S+NAS FDN N VHVSNLAWGVDDLTLENLFRE GNV++AKVVYDRDSGRSRGFGFVTY
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240
Query: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
+SAEEVNNAIQSL+GVDL GRSIRVTQAEA+ PRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276
BLAST of CmoCh06G003760 vs. TAIR 10
Match:
AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )
HSP 1 Score: 310.1 bits (793), Expect = 1.8e-84
Identity = 178/292 (60.96%), Postives = 217/292 (74.32%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
MAASA+ L LSS PK+L F + SL S+ F+ N S+S + + SPA S
Sbjct: 1 MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVS-FSIAAKWNSPA--S 60
Query: 61 RFVRNVAVSSDFDQEED-VLDV-DGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQV 120
RF RNVA++S+F+ EED DV + S++ DL+LFVGNLPF +DSAQLA LFESAG V
Sbjct: 61 RFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 120
Query: 121 ERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDD-- 180
E VEVIYDK+TGRSRGFGFVTMS+V+E EAAAQQFNGYEL+GRPLRVN GPPPPKR+D
Sbjct: 121 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 180
Query: 181 -----SSFRSSKN------ASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVY 240
SSF SS + S + N V+V NL+WGVDD+ LE+LF EQG VV+A+V+Y
Sbjct: 181 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 240
Query: 241 DRDSGRSRGFGFVTYSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
DRDSGRS+GFGFVTY S++EV NAI+SLDG DL+GR IRV++AEAR PRRQ+
Sbjct: 241 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
BLAST of CmoCh06G003760 vs. TAIR 10
Match:
AT3G53460.1 (chloroplast RNA-binding protein 29 )
HSP 1 Score: 285.0 bits (728), Expect = 6.3e-77
Identity = 174/344 (50.58%), Postives = 213/344 (61.92%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRS--DRVSPAF 60
M+ASA+ +LS+ PK+L + S+ P S+ F+ + + ++ S SPA
Sbjct: 1 MSASAS--SLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60
Query: 61 F-SRFVRNVAVSSDFDQEEDVLDVDGDDS------SYAPDLQLFVGNLPFTIDSAQLAGL 120
+ SRFVRNVAVSSDF+ EED + DGDDS S++PDL+LFVGNL F +DSAQLA L
Sbjct: 61 YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120
Query: 121 FESAGQVERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPP 180
FESAG VE VEVIYDK+TGRSRGFGFVTMS AE EAAAQQFNGYE EGRPLRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180
Query: 181 PKRDDSSFR--------------------------------------------------- 240
PKR++S R
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240
Query: 241 -------SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSR 278
S + S + N ++V NL+WGVDD+ LENLF EQG VV+A+V+YDRDSGRS+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300
BLAST of CmoCh06G003760 vs. TAIR 10
Match:
AT3G53460.2 (chloroplast RNA-binding protein 29 )
HSP 1 Score: 285.0 bits (728), Expect = 6.3e-77
Identity = 174/344 (50.58%), Postives = 213/344 (61.92%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRS--DRVSPAF 60
M+ASA+ +LS+ PK+L + S+ P S+ F+ + + ++ S SPA
Sbjct: 1 MSASAS--SLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60
Query: 61 F-SRFVRNVAVSSDFDQEEDVLDVDGDDS------SYAPDLQLFVGNLPFTIDSAQLAGL 120
+ SRFVRNVAVSSDF+ EED + DGDDS S++PDL+LFVGNL F +DSAQLA L
Sbjct: 61 YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120
Query: 121 FESAGQVERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPP 180
FESAG VE VEVIYDK+TGRSRGFGFVTMS AE EAAAQQFNGYE EGRPLRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180
Query: 181 PKRDDSSFR--------------------------------------------------- 240
PKR++S R
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240
Query: 241 -------SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSR 278
S + S + N ++V NL+WGVDD+ LENLF EQG VV+A+V+YDRDSGRS+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300
BLAST of CmoCh06G003760 vs. TAIR 10
Match:
AT3G53460.3 (chloroplast RNA-binding protein 29 )
HSP 1 Score: 285.0 bits (728), Expect = 6.3e-77
Identity = 174/344 (50.58%), Postives = 213/344 (61.92%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRS--DRVSPAF 60
M+ASA+ +LS+ PK+L + S+ P S+ F+ + + ++ S SPA
Sbjct: 1 MSASAS--SLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60
Query: 61 F-SRFVRNVAVSSDFDQEEDVLDVDGDDS------SYAPDLQLFVGNLPFTIDSAQLAGL 120
+ SRFVRNVAVSSDF+ EED + DGDDS S++PDL+LFVGNL F +DSAQLA L
Sbjct: 61 YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120
Query: 121 FESAGQVERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPP 180
FESAG VE VEVIYDK+TGRSRGFGFVTMS AE EAAAQQFNGYE EGRPLRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180
Query: 181 PKRDDSSFR--------------------------------------------------- 240
PKR++S R
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240
Query: 241 -------SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSR 278
S + S + N ++V NL+WGVDD+ LENLF EQG VV+A+V+YDRDSGRS+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300
BLAST of CmoCh06G003760 vs. TAIR 10
Match:
AT3G53460.4 (chloroplast RNA-binding protein 29 )
HSP 1 Score: 272.7 bits (696), Expect = 3.2e-73
Identity = 174/365 (47.67%), Postives = 213/365 (58.36%), Query Frame = 0
Query: 1 MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRS--DRVSPAF 60
M+ASA+ +LS+ PK+L + S+ P S+ F+ + + ++ S SPA
Sbjct: 1 MSASAS--SLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60
Query: 61 F-SRFVRNVAVSSDFDQEEDVLDVDGDDS------SYAPDLQLFVGNLPFTIDSAQLAGL 120
+ SRFVRNVAVSSDF+ EED + DGDDS S++PDL+LFVGNL F +DSAQLA L
Sbjct: 61 YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120
Query: 121 FESAGQVERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGY--------------- 180
FESAG VE VEVIYDK+TGRSRGFGFVTMS AE EAAAQQFNGY
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLLI 180
Query: 181 ------ELEGRPLRVNYGPPPPKRDDSSFR------------------------------ 240
E EGRPLRVN GPPPPKR++S R
Sbjct: 181 RVLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGG 240
Query: 241 ----------------------------SSKNASTFDNSNCVHVSNLAWGVDDLTLENLF 278
S + S + N ++V NL+WGVDD+ LENLF
Sbjct: 241 YGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLF 300
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q08935 | 1.6e-85 | 65.12 | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S... | [more] |
Q9ZUU4 | 2.6e-83 | 60.96 | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29... | [more] |
P49313 | 9.8e-83 | 62.37 | 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=... | [more] |
Q43349 | 8.9e-76 | 50.58 | 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A... | [more] |
P49314 | 2.4e-73 | 55.93 | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1F601 | 4.8e-149 | 100.00 | 29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO... | [more] |
A0A6J1KUB7 | 3.2e-145 | 98.55 | 29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1... | [more] |
A0A0A0LAY6 | 1.6e-120 | 83.81 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1 | [more] |
A0A5A7TQA3 | 2.2e-117 | 82.67 | 29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
A0A1S3B5S7 | 2.2e-117 | 82.67 | 29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 ... | [more] |