CmoCh06G003760 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh06G003760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description29 kDa ribonucleoprotein, chloroplastic-like
LocationCmo_Chr06: 1828141 .. 1830380 (-)
RNA-Seq ExpressionCmoCh06G003760
SyntenyCmoCh06G003760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAACTATAAATACCTAGCTTCCGGCCGTTGGGCCTTTCTTTCAAGCCTTATCTCAAAAAGCTCGGAAGCCATGGCTGCCTCTGCGACGTTCCTCACGCTTTCATCCCTAACCCCTAAAACCCTATCTTTTTCTAACCCTAAATTCGAACTTTTCTCGCTCAATCCATCTTCCATTGGCTTTCGGTCGAATCCGATTTCCATATCCGCTTTGGTTCTTCGTTCTGATAGGGTTTCTCCGGCGTTCTTCTCACGATTCGTTAGAAATGTCGCTGTCTCATCCGATTTTGACCAGGAGGAAGATGTCCTCGACGTCGATGGAGATGATTCCAGCTACGCTCCTGACCTCCAACTCTTCGTCGGAAATCTTCCTTTCACTATTGACAGTGCTCAACTCGCCGGTTTATTCGAAAGCGCCGGACAAGTTGAGAGGGTCGAGGTATTTTTTTCAATCTCGATTTTGTTTCTTTCATGTTTTGTAGGAGAAGTTAGAATTTATGTTGCTGTTCCTGTTATTAAGTTTCTCTGTTCTCTCGAGAGACTATCCATTTGCTTTGCCCTAATTTTCTGAAGTGTTTTGAAGGTGATTTACGACAAGATGACGGGACGAAGCAGGGGATTTGGTTTTGTCACTATGTCGAATGTTGCAGAGGCTGAAGCAGCTGCTCAACAATTTAACGGCTATGTAAGTGGCTACATCCATTTTACACCAACTTAATGGCTATGCAATTTTGTTTCTGGGTCTGCTTCATTTACTCCTTGGAAATCCAATTGCTGTTACTGTATCCCGAAACATATGTAGAGCTTATCTGCTTCCATATGGTTGTTCTTGAGCCGTAATTTTAATGCCAAAAGTCTCCTAGACTTGCCTCTGCGATCCAGTTATATACTGTTATCTTTCATTTTGTATCAAAGGTTCATTGGATTTGCTTTTAATTGATGATTTCTGGTGCTCCTCACAGGAACTCGAGGGTAGACCACTGAGGGTAAATTATGGACCCCCTCCACCAAAAAGGGACGATTCCTCTTTTAGGAGTTCAAAAAATGCTTCAACGTTTGATAACTCCAATTGTGTTCATGTGAGTAACCTCGCTTGGGGTGTTGATGATCTTACACTTGAGAACTTGTTTAGGGAACAAGGAAATGTTGTGAAGGCAAAAGTAGTTTATGACCGTGATAGCGGAAGATCTAGGGGGTTCGGTTTCGTAACATATAGTTCAGCAGAGGAAGTTAACAATGCCATTCAGTCCTTGGATGGAGTTGTAAGTTCGCTTGCCTCTTCATTTTTATGTTCTTGTTTTTCCTGAGCAGTTCTGCATTTGTCTATGATGAGTTTTGATATGTTTCCTCATGTTCAATCAAAGTATAGCCATTACAATCTTGTTTACTGAACTCAAGAGATATGAGTATGAAATTCTGTTGTTCATATGAATCATGATTGGTTGCATCTTCACCCTTTATGTGCATTGGCTTCACTTGTTTCTCTCATGTACGCTTTTAACGGTTTACGAAGCTGAAGTCGAAGTTTTTTTTTGTTGTTCCCGTTCATCTTGCCTGAAATGAAAATTTTTGTGTTGGACCATTTTGTCTCAGTTTATCCTTTGTTCGTTATTAAACTCATTTCATGTGATGTCCCACGTTGGATGGGGAGAAGAACAAATCACCTTCCCCTAGCATACGCGTTTTAAAGCTTTGAGGGAAAACCCAAAAGGGAAAGCCCAAAAAGGACAATATCTGCTAGCGGTGGATTTGGGGCGTTACATTTCATGCGTCAAAATCATGAGAGTTAATATTTTCATATATATAAGTATGAATGTTTACATTGCAGGACTTGAATGGAAGATCCATCCGAGTGACCCAAGCAGAAGCAAGGCTGCCTAGGCGCCAGTTTTGAGTATCAGAAGAGATCAACGGTAATTTATGCTCAATCTTGTTTTTCTACATTTTGTTCTCCGATAGCGATAGTAAATGGTGCCAAGTGATTTAGCTATACTTGCTCTGTGAACAGTGGGATATTTGATTTTTACTTTTCAGATTTTGCATACATCTAAGCTCCTAAACTTTATGACTTCAAATATTTGTCGTGTCTCAAACTTACTTTAGGACGAGTGAAGCCTAAGATTAGCAAGTTATGTCACGAACATTACAAAATTTTGGTTCTTAACGGTTAAAACCGATATTTAATAAAGGGTTTACAAGGAAGGACTTAATATCCTACGAATTACTTTGGC

mRNA sequence

AAAAAAAAAAAAAAACTATAAATACCTAGCTTCCGGCCGTTGGGCCTTTCTTTCAAGCCTTATCTCAAAAAGCTCGGAAGCCATGGCTGCCTCTGCGACGTTCCTCACGCTTTCATCCCTAACCCCTAAAACCCTATCTTTTTCTAACCCTAAATTCGAACTTTTCTCGCTCAATCCATCTTCCATTGGCTTTCGGTCGAATCCGATTTCCATATCCGCTTTGGTTCTTCGTTCTGATAGGGTTTCTCCGGCGTTCTTCTCACGATTCGTTAGAAATGTCGCTGTCTCATCCGATTTTGACCAGGAGGAAGATGTCCTCGACGTCGATGGAGATGATTCCAGCTACGCTCCTGACCTCCAACTCTTCGTCGGAAATCTTCCTTTCACTATTGACAGTGCTCAACTCGCCGGTTTATTCGAAAGCGCCGGACAAGTTGAGAGGGTCGAGGTGATTTACGACAAGATGACGGGACGAAGCAGGGGATTTGGTTTTGTCACTATGTCGAATGTTGCAGAGGCTGAAGCAGCTGCTCAACAATTTAACGGCTATGAACTCGAGGGTAGACCACTGAGGGTAAATTATGGACCCCCTCCACCAAAAAGGGACGATTCCTCTTTTAGGAGTTCAAAAAATGCTTCAACGTTTGATAACTCCAATTGTGTTCATGTGAGTAACCTCGCTTGGGGTGTTGATGATCTTACACTTGAGAACTTGTTTAGGGAACAAGGAAATGTTGTGAAGGCAAAAGTAGTTTATGACCGTGATAGCGGAAGATCTAGGGGGTTCGGTTTCGTAACATATAGTTCAGCAGAGGAAGTTAACAATGCCATTCAGTCCTTGGATGGAGTTGACTTGAATGGAAGATCCATCCGAGTGACCCAAGCAGAAGCAAGGCTGCCTAGGCGCCAGTTTTGAGTATCAGAAGAGATCAACGGTAATTTATGCTCAATCTTGTTTTTCTACATTTTGTTCTCCGATAGCGATAGTAAATGGTGCCAAGTGATTTAGCTATACTTGCTCTGTGAACAGTGGGATATTTGATTTTTACTTTTCAGATTTTGCATACATCTAAGCTCCTAAACTTTATGACTTCAAATATTTGTCGTGTCTCAAACTTACTTTAGGACGAGTGAAGCCTAAGATTAGCAAGTTATGTCACGAACATTACAAAATTTTGGTTCTTAACGGTTAAAACCGATATTTAATAAAGGGTTTACAAGGAAGGACTTAATATCCTACGAATTACTTTGGC

Coding sequence (CDS)

ATGGCTGCCTCTGCGACGTTCCTCACGCTTTCATCCCTAACCCCTAAAACCCTATCTTTTTCTAACCCTAAATTCGAACTTTTCTCGCTCAATCCATCTTCCATTGGCTTTCGGTCGAATCCGATTTCCATATCCGCTTTGGTTCTTCGTTCTGATAGGGTTTCTCCGGCGTTCTTCTCACGATTCGTTAGAAATGTCGCTGTCTCATCCGATTTTGACCAGGAGGAAGATGTCCTCGACGTCGATGGAGATGATTCCAGCTACGCTCCTGACCTCCAACTCTTCGTCGGAAATCTTCCTTTCACTATTGACAGTGCTCAACTCGCCGGTTTATTCGAAAGCGCCGGACAAGTTGAGAGGGTCGAGGTGATTTACGACAAGATGACGGGACGAAGCAGGGGATTTGGTTTTGTCACTATGTCGAATGTTGCAGAGGCTGAAGCAGCTGCTCAACAATTTAACGGCTATGAACTCGAGGGTAGACCACTGAGGGTAAATTATGGACCCCCTCCACCAAAAAGGGACGATTCCTCTTTTAGGAGTTCAAAAAATGCTTCAACGTTTGATAACTCCAATTGTGTTCATGTGAGTAACCTCGCTTGGGGTGTTGATGATCTTACACTTGAGAACTTGTTTAGGGAACAAGGAAATGTTGTGAAGGCAAAAGTAGTTTATGACCGTGATAGCGGAAGATCTAGGGGGTTCGGTTTCGTAACATATAGTTCAGCAGAGGAAGTTAACAATGCCATTCAGTCCTTGGATGGAGTTGACTTGAATGGAAGATCCATCCGAGTGACCCAAGCAGAAGCAAGGCTGCCTAGGCGCCAGTTTTGA

Protein sequence

MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFSRFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFRSSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF
Homology
BLAST of CmoCh06G003760 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.6e-85
Identity = 183/281 (65.12%), Postives = 210/281 (74.73%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
           MA+SA+ L   SLTP+TL    P     +   +S+ F S P S   L L S   S  F S
Sbjct: 1   MASSASSLHFLSLTPQTLPLPKP-----TSQTTSLSFFSLPPSSLNLSLSSS--SSCFSS 60

Query: 61  RFVRNVAVSSDFDQEEDVLDVDG---DDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQ 120
           RFVR V + SDFDQ EDV D D    ++ +++PDL++FVGNLPF+ DSA LA LFE AG 
Sbjct: 61  RFVRKVTL-SDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGN 120

Query: 121 VERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDS 180
           VE VEVIYDK+TGRSRGFGFVTMS+  E EAA QQFNGYEL+GR LRVN GPPP KR++S
Sbjct: 121 VEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS 180

Query: 181 SFR-SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFG 240
           SFR  S+   +FD+SN V+V NLAWGVD   LE LF EQG VV AKVVYDRDSGRSRGFG
Sbjct: 181 SFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFG 240

Query: 241 FVTYSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
           FVTYSSAEEVNNAI+SLDGVDLNGR+IRV+ AEAR PRRQF
Sbjct: 241 FVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273

BLAST of CmoCh06G003760 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.6e-83
Identity = 178/292 (60.96%), Postives = 217/292 (74.32%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
           MAASA+ L LSS  PK+L F   +    SL   S+ F+ N  S+S   + +   SPA  S
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVS-FSIAAKWNSPA--S 60

Query: 61  RFVRNVAVSSDFDQEED-VLDV-DGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQV 120
           RF RNVA++S+F+ EED   DV    + S++ DL+LFVGNLPF +DSAQLA LFESAG V
Sbjct: 61  RFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 120

Query: 121 ERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDD-- 180
           E VEVIYDK+TGRSRGFGFVTMS+V+E EAAAQQFNGYEL+GRPLRVN GPPPPKR+D  
Sbjct: 121 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 180

Query: 181 -----SSFRSSKN------ASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVY 240
                SSF SS +       S   + N V+V NL+WGVDD+ LE+LF EQG VV+A+V+Y
Sbjct: 181 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 240

Query: 241 DRDSGRSRGFGFVTYSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
           DRDSGRS+GFGFVTY S++EV NAI+SLDG DL+GR IRV++AEAR PRRQ+
Sbjct: 241 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289

BLAST of CmoCh06G003760 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 9.8e-83
Identity = 179/287 (62.37%), Postives = 209/287 (72.82%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
           MA+SA+ L   SLTP+TL    P  +  SL+  S+   S  +S+S+        S  F S
Sbjct: 1   MASSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPSSLNLSLSS-------PSSCFSS 60

Query: 61  RFVRNVAVSSDFDQEEDVLDVD---GDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQ 120
           RFVR V +  DFDQ EDV D D    ++ +++PDL++FVGNL F+ DSA LA LFE AG 
Sbjct: 61  RFVRKVTL-PDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGN 120

Query: 121 VERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDS 180
           VE VEVIYDK+TGRSRGFGFVTMS+  E EAA QQFNGYEL+GR LRVN GPPP KR++S
Sbjct: 121 VEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENS 180

Query: 181 SFR-------SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSG 240
           SFR        S+   +FD+SN V+V NLAWGVD   LE LF EQG VV AKVVYDRDSG
Sbjct: 181 SFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSG 240

Query: 241 RSRGFGFVTYSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
           RSRGFGFVTYSSAEEVNNAI+SLDGVDLNGR+IRV+ AEAR PRRQF
Sbjct: 241 RSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279

BLAST of CmoCh06G003760 vs. ExPASy Swiss-Prot
Match: Q43349 (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A PE=2 SV=2)

HSP 1 Score: 285.0 bits (728), Expect = 8.9e-76
Identity = 174/344 (50.58%), Postives = 213/344 (61.92%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRS--DRVSPAF 60
           M+ASA+  +LS+  PK+L     +    S+ P S+ F+ +   + ++   S     SPA 
Sbjct: 1   MSASAS--SLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  F-SRFVRNVAVSSDFDQEEDVLDVDGDDS------SYAPDLQLFVGNLPFTIDSAQLAGL 120
           + SRFVRNVAVSSDF+ EED +  DGDDS      S++PDL+LFVGNL F +DSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPP 180
           FESAG VE VEVIYDK+TGRSRGFGFVTMS  AE EAAAQQFNGYE EGRPLRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PKRDDSSFR--------------------------------------------------- 240
           PKR++S  R                                                   
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 -------SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSR 278
                   S + S   + N ++V NL+WGVDD+ LENLF EQG VV+A+V+YDRDSGRS+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

BLAST of CmoCh06G003760 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.4e-73
Identity = 165/295 (55.93%), Postives = 201/295 (68.14%), Query Frame = 0

Query: 3   ASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFSRF 62
           +S  FL ++S TP +L   N     FSL  SS+    +  SI      S  + P F S F
Sbjct: 7   SSLQFLFVTSQTPSSLK-PNSTLSFFSLPSSSLNLSLSSSSIG----HSASIKP-FESSF 66

Query: 63  VRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVERVE 122
              VA+ SDFDQ ED ++V  +   ++ DL+LFVGNLPF++DSA LAGLFE AG VE VE
Sbjct: 67  STRVAL-SDFDQLEDDVEV-AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVE 126

Query: 123 VIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFRSS 182
           VIYDK++GRSRGFGFVTMS   E EAA QQFNGYE++GR +RVN GP P KR++SSF   
Sbjct: 127 VIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGG 186

Query: 183 KNAS--------------------TFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAK 242
           +  +                    + D+SN V+V NL+WGVDDL L+ LF EQGNVV AK
Sbjct: 187 RGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAK 246

Query: 243 VVYDRDSGRSRGFGFVTYSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
           VVYDRDSGRSRGFGFVTYSSA+EVN+AI SL+G+DL+GRSIRV+ AE R PRRQF
Sbjct: 247 VVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER-PRRQF 292

BLAST of CmoCh06G003760 vs. ExPASy TrEMBL
Match: A0A6J1F601 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442435 PE=4 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 4.8e-149
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
           MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180
           VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240
           SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
           SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF
Sbjct: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 277

BLAST of CmoCh06G003760 vs. ExPASy TrEMBL
Match: A0A6J1KUB7 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498740 PE=4 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 3.2e-145
Identity = 272/276 (98.55%), Postives = 272/276 (98.55%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
           MAASATFL LSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALV RS RVSPAFFS
Sbjct: 1   MAASATFLPLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVFRSHRVSPAFFS 60

Query: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180
           VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVN GPPPPKRDDSSFR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNCGPPPPKRDDSSFR 180

Query: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240
           SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQ 277
           SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQ
Sbjct: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQ 276

BLAST of CmoCh06G003760 vs. ExPASy TrEMBL
Match: A0A0A0LAY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.6e-120
Identity = 233/278 (83.81%), Postives = 249/278 (89.57%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNP-SSIGFRSNPISISALVLRSDRVSPAFF 60
           M+ASA  LTL SLT KTLS SNPKF+LFSLNP SSI   SNPISIS+ +L S RVSP F 
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSD+ QEE  L+VDGDDSSYAPDL+LFVGNLPFT+DSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSF 180
           RVEVIYDK TGRSRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYGPPPPKRDDSSF
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RSSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVT 240
           R S+NAS FDN N VHVSNLAWGVDDLTLENLFRE+GNV++AKVVYDRDSG+SRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 YSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
           Y+SAEEVN AIQSLDGVDL+GR IRVTQAEAR PRRQF
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRPIRVTQAEARPPRRQF 278

BLAST of CmoCh06G003760 vs. ExPASy TrEMBL
Match: A0A5A7TQA3 (29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002580 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 2.2e-117
Identity = 229/277 (82.67%), Postives = 245/277 (88.45%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
           M+ASA  LTLSSLT KTLS SNPKF+LFSLNPSS     NPISIS+ VL S RVS  F S
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD+DQEED L+ DGDDS YAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180
           VEVIYDK TG+SRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYG PPPKRDDS FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240
            S+NAS FDN N VHVSNLAWGVDDLTLENLFRE GNV++AKVVYDRDSGRSRGFGFVTY
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
           +SAEEVNNAIQSL+GVDL GRSIRVTQAEA+ PRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

BLAST of CmoCh06G003760 vs. ExPASy TrEMBL
Match: A0A1S3B5S7 (29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 2.2e-117
Identity = 229/277 (82.67%), Postives = 245/277 (88.45%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
           M+ASA  LTLSSLT KTLS SNPKF+LFSLNPSS     NPISIS+ VL S RVS  F S
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD+DQEED L+ DGDDS YAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180
           VEVIYDK TG+SRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYG PPPKRDDS FR
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180

Query: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240
            S+NAS FDN N VHVSNLAWGVDDLTLENLFRE GNV++AKVVYDRDSGRSRGFGFVTY
Sbjct: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240

Query: 241 SSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
           +SAEEVNNAIQSL+GVDL GRSIRVTQAEA+ PRRQF
Sbjct: 241 NSAEEVNNAIQSLNGVDLVGRSIRVTQAEAKPPRRQF 276

BLAST of CmoCh06G003760 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 310.1 bits (793), Expect = 1.8e-84
Identity = 178/292 (60.96%), Postives = 217/292 (74.32%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60
           MAASA+ L LSS  PK+L F   +    SL   S+ F+ N  S+S   + +   SPA  S
Sbjct: 1   MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVS-FSIAAKWNSPA--S 60

Query: 61  RFVRNVAVSSDFDQEED-VLDV-DGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQV 120
           RF RNVA++S+F+ EED   DV    + S++ DL+LFVGNLPF +DSAQLA LFESAG V
Sbjct: 61  RFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 120

Query: 121 ERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDD-- 180
           E VEVIYDK+TGRSRGFGFVTMS+V+E EAAAQQFNGYEL+GRPLRVN GPPPPKR+D  
Sbjct: 121 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 180

Query: 181 -----SSFRSSKN------ASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVY 240
                SSF SS +       S   + N V+V NL+WGVDD+ LE+LF EQG VV+A+V+Y
Sbjct: 181 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 240

Query: 241 DRDSGRSRGFGFVTYSSAEEVNNAIQSLDGVDLNGRSIRVTQAEARLPRRQF 278
           DRDSGRS+GFGFVTY S++EV NAI+SLDG DL+GR IRV++AEAR PRRQ+
Sbjct: 241 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289

BLAST of CmoCh06G003760 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 285.0 bits (728), Expect = 6.3e-77
Identity = 174/344 (50.58%), Postives = 213/344 (61.92%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRS--DRVSPAF 60
           M+ASA+  +LS+  PK+L     +    S+ P S+ F+ +   + ++   S     SPA 
Sbjct: 1   MSASAS--SLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  F-SRFVRNVAVSSDFDQEEDVLDVDGDDS------SYAPDLQLFVGNLPFTIDSAQLAGL 120
           + SRFVRNVAVSSDF+ EED +  DGDDS      S++PDL+LFVGNL F +DSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPP 180
           FESAG VE VEVIYDK+TGRSRGFGFVTMS  AE EAAAQQFNGYE EGRPLRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PKRDDSSFR--------------------------------------------------- 240
           PKR++S  R                                                   
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 -------SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSR 278
                   S + S   + N ++V NL+WGVDD+ LENLF EQG VV+A+V+YDRDSGRS+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

BLAST of CmoCh06G003760 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 285.0 bits (728), Expect = 6.3e-77
Identity = 174/344 (50.58%), Postives = 213/344 (61.92%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRS--DRVSPAF 60
           M+ASA+  +LS+  PK+L     +    S+ P S+ F+ +   + ++   S     SPA 
Sbjct: 1   MSASAS--SLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  F-SRFVRNVAVSSDFDQEEDVLDVDGDDS------SYAPDLQLFVGNLPFTIDSAQLAGL 120
           + SRFVRNVAVSSDF+ EED +  DGDDS      S++PDL+LFVGNL F +DSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPP 180
           FESAG VE VEVIYDK+TGRSRGFGFVTMS  AE EAAAQQFNGYE EGRPLRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PKRDDSSFR--------------------------------------------------- 240
           PKR++S  R                                                   
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 -------SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSR 278
                   S + S   + N ++V NL+WGVDD+ LENLF EQG VV+A+V+YDRDSGRS+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

BLAST of CmoCh06G003760 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 285.0 bits (728), Expect = 6.3e-77
Identity = 174/344 (50.58%), Postives = 213/344 (61.92%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRS--DRVSPAF 60
           M+ASA+  +LS+  PK+L     +    S+ P S+ F+ +   + ++   S     SPA 
Sbjct: 1   MSASAS--SLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  F-SRFVRNVAVSSDFDQEEDVLDVDGDDS------SYAPDLQLFVGNLPFTIDSAQLAGL 120
           + SRFVRNVAVSSDF+ EED +  DGDDS      S++PDL+LFVGNL F +DSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPP 180
           FESAG VE VEVIYDK+TGRSRGFGFVTMS  AE EAAAQQFNGYE EGRPLRVN GPPP
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPP 180

Query: 181 PKRDDSSFR--------------------------------------------------- 240
           PKR++S  R                                                   
Sbjct: 181 PKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGS 240

Query: 241 -------SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSR 278
                   S + S   + N ++V NL+WGVDD+ LENLF EQG VV+A+V+YDRDSGRS+
Sbjct: 241 QRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSK 300

BLAST of CmoCh06G003760 vs. TAIR 10
Match: AT3G53460.4 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 272.7 bits (696), Expect = 3.2e-73
Identity = 174/365 (47.67%), Postives = 213/365 (58.36%), Query Frame = 0

Query: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRS--DRVSPAF 60
           M+ASA+  +LS+  PK+L     +    S+ P S+ F+ +   + ++   S     SPA 
Sbjct: 1   MSASAS--SLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAE 60

Query: 61  F-SRFVRNVAVSSDFDQEEDVLDVDGDDS------SYAPDLQLFVGNLPFTIDSAQLAGL 120
           + SRFVRNVAVSSDF+ EED +  DGDDS      S++PDL+LFVGNL F +DSAQLA L
Sbjct: 61  YPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQL 120

Query: 121 FESAGQVERVEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGY--------------- 180
           FESAG VE VEVIYDK+TGRSRGFGFVTMS  AE EAAAQQFNGY               
Sbjct: 121 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLLI 180

Query: 181 ------ELEGRPLRVNYGPPPPKRDDSSFR------------------------------ 240
                 E EGRPLRVN GPPPPKR++S  R                              
Sbjct: 181 RVLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGG 240

Query: 241 ----------------------------SSKNASTFDNSNCVHVSNLAWGVDDLTLENLF 278
                                        S + S   + N ++V NL+WGVDD+ LENLF
Sbjct: 241 YGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLF 300

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q089351.6e-8565.1229 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S... [more]
Q9ZUU42.6e-8360.96RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29... [more]
P493139.8e-8362.3730 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=... [more]
Q433498.9e-7650.5829 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A... [more]
P493142.4e-7355.9331 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=... [more]
Match NameE-valueIdentityDescription
A0A6J1F6014.8e-149100.0029 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1KUB73.2e-14598.5529 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A0A0LAY61.6e-12083.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1[more]
A0A5A7TQA32.2e-11782.6729 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3B5S72.2e-11782.6729 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 ... [more]
Match NameE-valueIdentityDescription
AT2G37220.11.8e-8460.96RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G53460.16.3e-7750.58chloroplast RNA-binding protein 29 [more]
AT3G53460.26.3e-7750.58chloroplast RNA-binding protein 29 [more]
AT3G53460.36.3e-7750.58chloroplast RNA-binding protein 29 [more]
AT3G53460.43.2e-7347.67chloroplast RNA-binding protein 29 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 193..266
e-value: 6.5E-25
score: 98.8
coord: 93..166
e-value: 3.5E-27
score: 106.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 94..164
e-value: 9.4E-20
score: 70.2
coord: 195..264
e-value: 6.9E-17
score: 61.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 92..170
score: 19.36544
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 192..270
score: 18.597946
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 178..277
e-value: 3.1E-26
score: 94.1
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 71..177
e-value: 1.4E-27
score: 98.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..183
NoneNo IPR availablePANTHERPTHR48025OS02G0815200 PROTEINcoord: 1..277
NoneNo IPR availablePANTHERPTHR48025:SF129 KDA RIBONUCLEOPROTEIN, CHLOROPLASTICcoord: 1..277
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 187..275
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 88..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G003760.1CmoCh06G003760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1901259 chloroplast rRNA processing
cellular_component GO:0009507 chloroplast
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding