CmoCh06G003310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G003310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-type domain-containing protein
Location	Cmo_Chr06: 1617530 .. 1618372 (+)
RNA-Seq Expression	CmoCh06G003310
Synteny	CmoCh06G003310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAATTAAAACCCTCCACTGTAATCATGGCCGCCCTCTCCACCCTCTCTTCGCCGCATCTCTCCGATCTCTCCCACTCCATTTTCTCCGACGTCCACACCAGCCGCCGTCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCTTCACTCTCCGCCACCTCAATTCCCTTTCCCTTTCCCACAAATCTCTCCTCATCGCCCGCTTCCTTCTCTCAGCCCTCCGCCGTCTCTCCCGTCCCTTCCAGACGCCGTCGAAGTCCTTCCCCCACCACCCTTCTACCGCCGCCGTTACCCCTCGCGACCTCGACGCCGCCGTCCTCCTCCTCCTTCTCTGCGATGTACGCCAGCATAATCCGGCCGCCCTCGAAACTCCGATCACCCAATGGCGATCGACCCTCTGTCGAATCTACTCCGATTCCCTCTTGACGATCTCTGGCATCGCCACCGGCGGCGCCGGGGCCTTTATTCCGTATATTGAGACGGTGGCCAGGTGCTGGAAATTCGTGGGATTTGTTGTGAGCCGCAACGGCGGAAAGGCCCGGAGAGAGGTGGCGGCGTCGCCTGTCGCAGTGGTGGAGTTGCCGTCGGTGGCGGTGGGCGGCTGTATGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAATGAAGGGAGAGACGCGTGTCAATTGCCTTGTGAGCACTTATTCCATTGGCTCTGTATTCTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACAGATGACATCTTCGGCGAGATCCAACGGCTCTGGGACATCCTCGTCAAGGTGGGCTCCTCATCTGATGGAGATTAA

mRNA sequence

ATGGAAGAATTAAAACCCTCCACTGTAATCATGGCCGCCCTCTCCACCCTCTCTTCGCCGCATCTCTCCGATCTCTCCCACTCCATTTTCTCCGACGTCCACACCAGCCGCCGTCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCTTCACTCTCCGCCACCTCAATTCCCTTTCCCTTTCCCACAAATCTCTCCTCATCGCCCGCTTCCTTCTCTCAGCCCTCCGCCGTCTCTCCCGTCCCTTCCAGACGCCGTCGAAGTCCTTCCCCCACCACCCTTCTACCGCCGCCGTTACCCCTCGCGACCTCGACGCCGCCGTCCTCCTCCTCCTTCTCTGCGATGTACGCCAGCATAATCCGGCCGCCCTCGAAACTCCGATCACCCAATGGCGATCGACCCTCTGTCGAATCTACTCCGATTCCCTCTTGACGATCTCTGGCATCGCCACCGGCGGCGCCGGGGCCTTTATTCCGTATATTGAGACGGTGGCCAGGTGCTGGAAATTCGTGGGATTTGTTGTGAGCCGCAACGGCGGAAAGGCCCGGAGAGAGGTGGCGGCGTCGCCTGTCGCAGTGGTGGAGTTGCCGTCGGTGGCGGTGGGCGGCTGTATGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAATGAAGGGAGAGACGCGTGTCAATTGCCTTGTGAGCACTTATTCCATTGGCTCTGTATTCTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACAGATGACATCTTCGGCGAGATCCAACGGCTCTGGGACATCCTCGTCAAGGTGGGCTCCTCATCTGATGGAGATTAA

Coding sequence (CDS)

ATGGAAGAATTAAAACCCTCCACTGTAATCATGGCCGCCCTCTCCACCCTCTCTTCGCCGCATCTCTCCGATCTCTCCCACTCCATTTTCTCCGACGTCCACACCAGCCGCCGTCGCCTCACCTTCATCCTCTCTTCCCCAACCCTCTTCTCCTTCACTCTCCGCCACCTCAATTCCCTTTCCCTTTCCCACAAATCTCTCCTCATCGCCCGCTTCCTTCTCTCAGCCCTCCGCCGTCTCTCCCGTCCCTTCCAGACGCCGTCGAAGTCCTTCCCCCACCACCCTTCTACCGCCGCCGTTACCCCTCGCGACCTCGACGCCGCCGTCCTCCTCCTCCTTCTCTGCGATGTACGCCAGCATAATCCGGCCGCCCTCGAAACTCCGATCACCCAATGGCGATCGACCCTCTGTCGAATCTACTCCGATTCCCTCTTGACGATCTCTGGCATCGCCACCGGCGGCGCCGGGGCCTTTATTCCGTATATTGAGACGGTGGCCAGGTGCTGGAAATTCGTGGGATTTGTTGTGAGCCGCAACGGCGGAAAGGCCCGGAGAGAGGTGGCGGCGTCGCCTGTCGCAGTGGTGGAGTTGCCGTCGGTGGCGGTGGGCGGCTGTATGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAATGAAGGGAGAGACGCGTGTCAATTGCCTTGTGAGCACTTATTCCATTGGCTCTGTATTCTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACAGATGACATCTTCGGCGAGATCCAACGGCTCTGGGACATCCTCGTCAAGGTGGGCTCCTCATCTGATGGAGATTAA

Protein sequence

MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSLSLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQHNPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNGGKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSSSDGD

Homology

[Close]

BLAST of CmoCh06G003310 vs. ExPASy Swiss-Prot
Match: Q8GXF8 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 GN=SGR9 PE=1 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.4e-67
Identity = 149/279 (53.41%), Postives = 180/279 (64.52%), Query Frame = 0


Query: 7   STVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSLSLSHKS 66
           +T+IMA+LS LS  HL++L+HSI S  H  RRRL  +LSSPTLFS TLRHL SLSL  K+
Sbjct: 6   TTIIMASLSALSPSHLTNLTHSILSISHHHRRRLGAVLSSPTLFSLTLRHLLSLSLPDKT 65

Query: 67  LLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTP--RDLDAAVLLLLLCDVRQHNPAA 126
            LIA  LLS L         P      H S+ AVT   RDLDA VLLL LC+  Q +P  
Sbjct: 66  HLIANHLLSLLH--------PLLIHRKHHSSYAVTMKLRDLDAVVLLLFLCETHQLHPDV 125

Query: 127 LETPITQWRSTLCRIYSDSLLT-ISGIATGGAGAFIPYIETVARCWKFVGFV-----VSR 186
           LE     WR  L   YS+++L+  SG+ T  AG  +PYIET+ RC +FV  +     + R
Sbjct: 126 LEASADNWREILGNTYSNNMLSNNSGLWTCDAGILMPYIETLVRCKRFVDIMGGYNHLRR 185

Query: 187 NGGKARREVAASPVAVVELPSVAVGGCMA-----VECVICKEEMNEGRDACQLPCEHLFH 246
              K   +V A+  AVV L +V V    A     VECVICKEEM+EGRD C++PC+H FH
Sbjct: 186 RDQKEGYQVPAARAAVVALRAVEVFNVAASNAGEVECVICKEEMSEGRDVCEMPCQHFFH 245

Query: 247 WLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWDILVK 273
           W CILPWL K+NTCP CRFQLPTDD+F EIQRLW+ILVK
Sbjct: 246 WKCILPWLSKKNTCPFCRFQLPTDDVFSEIQRLWEILVK 276

[Close]

BLAST of CmoCh06G003310 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.5e-14
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 189 ASPVAVVELPSVAVGGCMAV----ECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKR 248
           AS  A+  LP+V V   M      +C +C +E  +G D  Q+PC+H+FH  C+LPWL   
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250

Query: 249 NTCPCCRFQLPTDD 259
           N+CP CRF+LPTDD
Sbjct: 251 NSCPVCRFELPTDD 264

[Close]

BLAST of CmoCh06G003310 vs. ExPASy Swiss-Prot
Match: Q9P0P0 (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-13
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 189 ASPVAVVELPSVAVGGCMA-VECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTC 248
           A+   V  LP   + G  A ++C +C  E  E   A ++PC HLFH  CILPWL K N+C
Sbjct: 54  AAKTVVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSC 113

Query: 249 PCCRFQLPTDD 259
           P CR++LPTDD
Sbjct: 114 PLCRYELPTDD 124

[Close]

BLAST of CmoCh06G003310 vs. ExPASy Swiss-Prot
Match: Q3T0W3 (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-13
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 189 ASPVAVVELPSVAVGGCMA-VECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTC 248
           A+  AV  LP   + G  A ++C +C  E  E   A ++PC HLFH  CILPWL K N+C
Sbjct: 54  AAKTAVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSC 113

Query: 249 PCCRFQLPTDD 259
           P CR +LPTDD
Sbjct: 114 PLCRHELPTDD 124

[Close]

BLAST of CmoCh06G003310 vs. ExPASy Swiss-Prot
Match: Q6GPV5 (E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.2e-13
Identity = 38/72 (52.78%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 189 ASPVAVVELPSVAV---GGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRN 248
           AS   V  LP V V       A++C +C  E  EG    QLPCEHLFH  CILPWL K N
Sbjct: 55  ASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTN 114

Query: 249 TCPCCRFQLPTD 258
           +CP CR +LPTD
Sbjct: 115 SCPLCRHELPTD 126

[Close]

BLAST of CmoCh06G003310 vs. ExPASy TrEMBL
Match: A0A6J1F6V7 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita moschata OX=3662 GN=LOC111442657 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 4.8e-157
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0


Query: 1   MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60
           MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL
Sbjct: 1   MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH 120
           SLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH
Sbjct: 61  SLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH 120

Query: 121 NPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNG 180
           NPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNG
Sbjct: 121 NPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNG 180

Query: 181 GKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPW 240
           GKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPW
Sbjct: 181 GKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPW 240

Query: 241 LRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSSSDGD 281
           LRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSSSDGD
Sbjct: 241 LRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSSSDGD 280

[Close]

BLAST of CmoCh06G003310 vs. ExPASy TrEMBL
Match: A0A6J1KTZ6 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita maxima OX=3661 GN=LOC111498644 PE=4 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 5.5e-153
Identity = 272/280 (97.14%), Postives = 274/280 (97.86%), Query Frame = 0


Query: 1   MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60
           MEELKPSTVIMAALSTLS PHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL
Sbjct: 1   MEELKPSTVIMAALSTLSPPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH 120
           SLSHKSLL+ARFLLSALRRLSRPFQTPSKSFPHHPSTA VTPRDLDAAVLLLLLCDVRQH
Sbjct: 61  SLSHKSLLVARFLLSALRRLSRPFQTPSKSFPHHPSTAFVTPRDLDAAVLLLLLCDVRQH 120

Query: 121 NPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNG 180
           NPAALETPIT WRSTLCRIYSDSLLTISGIATGG+GA IPYIETV RCWKFVGFVVSRNG
Sbjct: 121 NPAALETPITHWRSTLCRIYSDSLLTISGIATGGSGAIIPYIETVGRCWKFVGFVVSRNG 180

Query: 181 GKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPW 240
           GKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPW
Sbjct: 181 GKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPW 240

Query: 241 LRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSSSDGD 281
           LRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGS SDGD
Sbjct: 241 LRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGSPSDGD 280

[Close]

BLAST of CmoCh06G003310 vs. ExPASy TrEMBL
Match: A0A1S4DUS9 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo OX=3656 GN=LOC103486430 PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 4.3e-129
Identity = 236/284 (83.10%), Postives = 259/284 (91.20%), Query Frame = 0


Query: 1   MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60
           MEEL+P +VIMAAL+TLS P L+DLSHSIFS+VH  RRRLTFILSSPTLFS TLRHLNSL
Sbjct: 1   MEELEPPSVIMAALATLSPPRLTDLSHSIFSEVHQHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH 120
           SLSHKSLL+ARFLLSALRRLSRPFQ+PSK  P+HPSTAA++P+DLDAAVLLLLLC+VRQH
Sbjct: 61  SLSHKSLLLARFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQH 120

Query: 121 NPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNG 180
           NPAAL TPIT+WR+TLCRIYS+SLLTISG+ATGG GA IPYI+TV RCWKFVGFV S  G
Sbjct: 121 NPAALRTPITKWRATLCRIYSESLLTISGLATGGGGALIPYIDTVVRCWKFVGFVGS-CG 180

Query: 181 GKARREVAASPVAVVELPSVAV-GGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILP 240
           GK RREVAASP+AVVELPSVAV GG   VECVICKEEM EGRDAC+LPC+HLFHWLCILP
Sbjct: 181 GKVRREVAASPMAVVELPSVAVGGGGGTVECVICKEEMGEGRDACKLPCDHLFHWLCILP 240

Query: 241 WLRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGS---SSDGD 281
           WLRKRNTCPCCRFQLPTDD+FGEIQRLW+IL KVGS   +SDGD
Sbjct: 241 WLRKRNTCPCCRFQLPTDDVFGEIQRLWEILFKVGSTMCTSDGD 283

[Close]

BLAST of CmoCh06G003310 vs. ExPASy TrEMBL
Match: A0A0A0LAQ3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736610 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.8e-128
Identity = 233/284 (82.04%), Postives = 258/284 (90.85%), Query Frame = 0


Query: 1   MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60
           MEEL+P +VI AAL+TLS P L+DLSHSIFS++H  RRRLTFILSSPTLFS TLRHLNSL
Sbjct: 1   MEELEPPSVITAALATLSPPRLADLSHSIFSEIHQHRRRLTFILSSPTLFSLTLRHLNSL 60

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH 120
           SLSHKSLL+ARFLLSALRRLSRPFQ+PSK  P+HPSTAA++P+DLDAAVLLLLLC+VRQH
Sbjct: 61  SLSHKSLLLARFLLSALRRLSRPFQSPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQH 120

Query: 121 NPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNG 180
           NPAAL TPIT+WR+TLC+IYSDSLLT+SG+ATGG GA IPYI+TV RCWKFVGFV S  G
Sbjct: 121 NPAALRTPITKWRATLCKIYSDSLLTVSGLATGGGGALIPYIDTVVRCWKFVGFVGS-CG 180

Query: 181 GKARREVAASPVAVVELPSVAV-GGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILP 240
           GK RREVAASP+AVVELPSVAV GG  AVECVICKEEM EGRDAC+LPC+HLFHWLCILP
Sbjct: 181 GKVRREVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILP 240

Query: 241 WLRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGS---SSDGD 281
           WLRKRNTCPCCRFQLPTDD+ GEIQRLW+IL KVGS   +SDGD
Sbjct: 241 WLRKRNTCPCCRFQLPTDDVLGEIQRLWEILFKVGSTMCTSDGD 283

[Close]

BLAST of CmoCh06G003310 vs. ExPASy TrEMBL
Match: A0A6J1CX45 (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Momordica charantia OX=3673 GN=LOC111015097 PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 2.6e-126
Identity = 231/283 (81.63%), Postives = 250/283 (88.34%), Query Frame = 0


Query: 1   MEELKPSTVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSL 60
           MEEL+P TVIMAALS LS  HLSDLSHSIFSD+H  RRRLTFILSSPTLFS TLRHLNSL
Sbjct: 30  MEELEPPTVIMAALSALSPLHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSL 89

Query: 61  SLSHKSLLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTPRDLDAAVLLLLLCDVRQH 120
           SLSHKSLLIARFLLSALRRL  PFQ P+KS P HPSTAA+TPRDLDAAVLLLLLC+VRQH
Sbjct: 90  SLSHKSLLIARFLLSALRRLCHPFQPPAKSLPQHPSTAAITPRDLDAAVLLLLLCEVRQH 149

Query: 121 NPAALETPITQWRSTLCRIYSDSLLTISGIATGGAGAFIPYIETVARCWKFVGFVVSRNG 180
           NPAALETP+ +WR+ LCRIYSDS+L+ISGI +GG    +PY+ETVARCWKFVGFV S  G
Sbjct: 150 NPAALETPLPKWRAALCRIYSDSILSISGIISGGGAVMVPYVETVARCWKFVGFVGS-CG 209

Query: 181 GKARREVAASPVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPW 240
           GK +REVAASPVAVVELPSVA     AVECVICKEEM EGRDACQLPCEHLFHWLCILPW
Sbjct: 210 GKGKREVAASPVAVVELPSVAAAA--AVECVICKEEMGEGRDACQLPCEHLFHWLCILPW 269

Query: 241 LRKRNTCPCCRFQLPTDDIFGEIQRLWDILVKVGS---SSDGD 281
           LRKRNTCPCCRFQLPTDD+F EIQRLW+IL+K+GS   +SDGD
Sbjct: 270 LRKRNTCPCCRFQLPTDDVFAEIQRLWEILLKLGSTITTSDGD 309

[Close]

BLAST of CmoCh06G003310 vs. TAIR 10
Match: AT5G02750.1 (RING/U-box superfamily protein )

HSP 1 Score: 256.5 bits (654), Expect = 2.4e-68
Identity = 149/279 (53.41%), Postives = 180/279 (64.52%), Query Frame = 0


Query: 7   STVIMAALSTLSSPHLSDLSHSIFSDVHTSRRRLTFILSSPTLFSFTLRHLNSLSLSHKS 66
           +T+IMA+LS LS  HL++L+HSI S  H  RRRL  +LSSPTLFS TLRHL SLSL  K+
Sbjct: 6   TTIIMASLSALSPSHLTNLTHSILSISHHHRRRLGAVLSSPTLFSLTLRHLLSLSLPDKT 65

Query: 67  LLIARFLLSALRRLSRPFQTPSKSFPHHPSTAAVTP--RDLDAAVLLLLLCDVRQHNPAA 126
            LIA  LLS L         P      H S+ AVT   RDLDA VLLL LC+  Q +P  
Sbjct: 66  HLIANHLLSLLH--------PLLIHRKHHSSYAVTMKLRDLDAVVLLLFLCETHQLHPDV 125

Query: 127 LETPITQWRSTLCRIYSDSLLT-ISGIATGGAGAFIPYIETVARCWKFVGFV-----VSR 186
           LE     WR  L   YS+++L+  SG+ T  AG  +PYIET+ RC +FV  +     + R
Sbjct: 126 LEASADNWREILGNTYSNNMLSNNSGLWTCDAGILMPYIETLVRCKRFVDIMGGYNHLRR 185

Query: 187 NGGKARREVAASPVAVVELPSVAVGGCMA-----VECVICKEEMNEGRDACQLPCEHLFH 246
              K   +V A+  AVV L +V V    A     VECVICKEEM+EGRD C++PC+H FH
Sbjct: 186 RDQKEGYQVPAARAAVVALRAVEVFNVAASNAGEVECVICKEEMSEGRDVCEMPCQHFFH 245

Query: 247 WLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWDILVK 273
           W CILPWL K+NTCP CRFQLPTDD+F EIQRLW+ILVK
Sbjct: 246 WKCILPWLSKKNTCPFCRFQLPTDDVFSEIQRLWEILVK 276

[Close]

BLAST of CmoCh06G003310 vs. TAIR 10
Match: AT5G08139.1 (RING/U-box superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 3.7e-16
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 191 PVAVVELPSVAVGGCMAVECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTCPCC 250
           PV ++E  +   GG +   C +CK+EMN G  A QLPC H +H  CI+PWL+ RNTCP C
Sbjct: 293 PVVLLEGENDDDGGLV---CAVCKDEMNIGNKAVQLPCNHKYHSECIVPWLKVRNTCPVC 352

Query: 251 RFQLPTDD 259
           R++LPTDD
Sbjct: 353 RYELPTDD 357

[Close]

BLAST of CmoCh06G003310 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-15
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 189 ASPVAVVELPSVAVGGCMAV----ECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKR 248
           AS  A+  LP+V V   M      +C +C +E  +G D  Q+PC+H+FH  C+LPWL   
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250

Query: 249 NTCPCCRFQLPTDD 259
           N+CP CRF+LPTDD
Sbjct: 251 NSCPVCRFELPTDD 264

[Close]

BLAST of CmoCh06G003310 vs. TAIR 10
Match: AT5G60820.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-14
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 207 AVECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTD 258
           AV C +CKEEM  G++  +LPC H +H  CI+PWL  RNTCP CRF+LP+D
Sbjct: 369 AVCCAVCKEEMIVGKEVAELPCRHKYHSECIVPWLGIRNTCPVCRFELPSD 419

[Close]

BLAST of CmoCh06G003310 vs. TAIR 10
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-14
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 177 SRNGGKARREVAASPVAVVELPSVAVGGC---MAVECVICKEEMNEGRDACQLPCEHLFH 236
           S NG        AS  A+  LP V +  C       C +C E    G +  ++PC+H+FH
Sbjct: 179 SGNGIGRSGNPPASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFH 238

Query: 237 WLCILPWLRKRNTCPCCRFQLPTDDI 260
             CI+PWL  RN+CP CRF+LP+D I
Sbjct: 239 GDCIVPWLSIRNSCPVCRFELPSDPI 264

The following BLAST results are available for this feature:

BLAST of CmoCh06G003310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GXF8	3.4e-67	53.41	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q8LPN7	7.5e-14	47.30	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9P0P0	1.3e-13	47.89	E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1	[more]
Q3T0W3	1.7e-13	49.30	E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1	[more]
Q6GPV5	2.2e-13	52.78	E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1	[more]

BLAST of CmoCh06G003310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6V7	4.8e-157	100.00	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KTZ6	5.5e-153	97.14	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A1S4DUS9	4.3e-129	83.10	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0LAQ3	2.8e-128	82.04	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G736610 P...	[more]
A0A6J1CX45	2.6e-126	81.63	E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of CmoCh06G003310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02750.1	2.4e-68	53.41	RING/U-box superfamily protein	[more]
AT5G08139.1	3.7e-16	52.94	RING/U-box superfamily protein	[more]
AT3G19950.1	5.3e-15	47.30	RING/U-box superfamily protein	[more]
AT5G60820.1	2.0e-14	58.82	RING/U-box superfamily protein	[more]
AT3G46620.1	4.5e-14	40.70	zinc finger (C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 210..250 e-value: 7.0E-6 score: 35.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 209..251 e-value: 6.3E-11 score: 42.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 210..251 score: 12.1057
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 180..257 e-value: 1.8E-16 score: 61.6
None	No IPR available	PANTHER	PTHR15710:SF67	E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC	coord: 3..275
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 3..275
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 209..257

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G003310.1	CmoCh06G003310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0009501	amyloplast
molecular_function	GO:0061630	ubiquitin protein ligase activity