CmoCh06G003180 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G003180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ras-related protein Rab-8A
Location	Cmo_Chr06: 1550897 .. 1553398 (+)
RNA-Seq Expression	CmoCh06G003180
Synteny	CmoCh06G003180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCCACCTGCACGAGCTCGAGCTGATTACGATTATCTCATCAAGCTTCTGCTGATCGGCGACAGCGGTGCGTTAATTTTGCTTTCTTGTTCTGTTCGAGCTTCGATCTTGTGGTTTCGTTCGATTTATAATCAGTAATTGTGAAATTACTGGATGTTAATTGGATTTTTGTTTTTATATACGAATGCGTTCATTAATATCGATGATTGGAGGATCTCGTTATTGGAATCTAGTATGCGTGGTGTGGATTAATGGTGAGATATCCGAAGTGGTTTTTCATTGGTATGATTAGAGAAAGTTGCTATAGTTTTTGTTATGTGAGAGTTGTGTTATATCCGTAGGAATTCGTTTTTCTGGTAGGAATTTGAGTTCATGAGCTGCTTCTTGTCGCGAGATAAGTGGATTTCACGATTAGAATGTAGTGCATAATAAATTGTTGATGGATTAGCGGTGAAGTTCCCGAAAGGATTTGTCATTAACTCATTTGTAGGATAATAGAATATTGTTATAGTTTTTGTTGTGAGAGATGTATTGTTCCGGTAGGATTTCGTTTTCTACTTAGACTCCTAAATTACAAGTTTAGAAGCTATTTCATGTGACATGACAAGGCAGGTGTGGGAAAGAGTTGCCTTCTGTTGCGGTTCTCCGACGGCTCCTTCACCACCAGCTTCATCACAACCATAGGGTACGTGCATTTACACTGTAATATCGAAATTAATACATTTTCTATTTTACTTCCTTTGTCTGCTCTTCCTGATTTCATTTCCTTGGTTGTTCTCGAACAGCATTGATTTCAAGATTAGAACCATTGAGCTTGATGGAAAACGGATTAAATTGCAAATTTGGGATACCGCTGGTCAGGAGCGGTTTAGAACAATTACAACTGGTCTGTACACATTCTTAACGTTTACTCTTATTAGCAATATTGGAATATGCAGTTGCAGAAGAGTCCTGGAAGTCATTTAATTTTTCTTTCTACTTTATTCCAACGTATTATTTCATGCTTCTTAAATTTCTAGAGGATTAATCTTCATATAAATGTTTGCAATCCTTAATCTCCATCCTTGCAAGTTTTGATTTCCTGATGAGTATGGACTTCTGTTTTTTGTGATATTCTGGATGATTTTTAGAAATTTCTATGTAGATTTACATGCTGACAAATTTTCAGACTTAATATATTTGATTACTCATAAGGATTTGATCTTATTTATTTAGTTTTCGTATGTAAATGTTTCCTCCTATTTCTGGGAGGTCCTCTAAGTCTCAAGTAAAATTTTATTTCTGCAGCTTACTATCGTGGAGCCATGGGCATTTTGCTAGTGTACGATGTCACAGACGAGTCATCATTTAACAGTAATTCTTCTCTACCTTAAACCAAAGGTTAAAGATCTTAAGATGCTGGTTGCTCTTTTAAGTTCATAGTAGGACTACAGTCGGTTCAGAAATTTGTCCATTGAAGATAGTTGTACTAGAGTAGCTTTTCTCGTTCTTTATTGCGTAAAGGAACATCCTTCTTTTCTTCATGACATTATCTATTTTCTTATTAACATCTTAGTTGCTTGTCAAGACATGATTTTCTTTTCCTTTTTTCCTTTTCTTATTTGTTTTTTAATCTATTCAGACATTAGAAATTGGATCCGTAACATTGAACAACATGCTTCTGACAATGTCAACAAGATACTGGTGGGTAACAAGGCTGATATGGATGAGAGCAAAAGGGTATGTATTTTTTCTACGTTTTTTTGTAACTTCAACTTGTATGTTTCCAAATCCACTTTCTCCAGAAATCTATGATTGTTCAAATCTCAGTGAATTGGTAATTAAAACTGGAACTTTCGTTTAGGCCGTTCCTACATCCAAAGGTCAAGCTCTCGCAGATGAGTATGGCATCAAGTTTTTTGAGACTGTAAGTAAAATATTTAACAGCTCTCGAACGTATTTCCTGGGTAGTTAGTTTAGATCATATGTCTTGAAGATGTTGTGTATTTCAGAGTGCAAAGACAAATTTGAATGTGGAAGAAGTTTTCTTCTCCATAGCTAAGGATATTAAACAAAGGCTATCTGACAGCGATTCTAAGGCTGAGGTATAAAATTTTGTGTTATTTTAGCCATTAATTCTTTCTTTGAGTTATTATAGCCATAATTTGTGCATCCCCTCTCTTACCTGGTGGGATTTTGCAGCCTCAAACAATCAAGATAAACCAAGCAGATAATGGAGCAGGGGCTTCCCAAACTGCTCAGAAGTCGGCTTGCTGTGGATCTTAAGACTGCTACACCAAAGGTGGTTTACTTGCAAGGCAATACAATTAGGTTACTCGCATTTCTTTCTGTCTTTTTTTTCTCTCACTAGTACTGCTATAGTAGAACTCAATTTGGGAGTTCATAGTCAATCCTTATCAGGAAATTAATTATATGGTTCATCTACCACATATCTCATTTCAAACTGAAAAAGAAGTTTCATATTTTCAATATAACTGCTTTCCGTAGTCGAGTTTA

mRNA sequence

ATGGCTGCTCCACCTGCACGAGCTCGAGCTGATTACGATTATCTCATCAAGCTTCTGCTGATCGGCGACAGCGGTGCGTTAATTTTGCTTTCTTGTTCTGTTCGAGCTTCGATCTTGTGGATAATAGAATATTGTTATAGTTTTTGTTGTGAGAGATGTGTGGGAAAGAGTTGCCTTCTGTTGCGGTTCTCCGACGGCTCCTTCACCACCAGCTTCATCACAACCATAGGCATTGATTTCAAGATTAGAACCATTGAGCTTGATGGAAAACGGATTAAATTGCAAATTTGGGATACCGCTGGTCAGGAGCGGTTTAGAACAATTACAACTGCTTACTATCGTGGAGCCATGGGCATTTTGCTAGTGTACGATGTCACAGACGAGTCATCATTTAACAACATTAGAAATTGGATCCGTAACATTGAACAACATGCTTCTGACAATGTCAACAAGATACTGGTGGGTAACAAGGCTGATATGGATGAGAGCAAAAGGGCCGTTCCTACATCCAAAGGTCAAGCTCTCGCAGATGAGTATGGCATCAAGTTTTTTGAGACTAGTGCAAAGACAAATTTGAATGTGGAAGAAGTTTTCTTCTCCATAGCTAAGGATATTAAACAAAGGCTATCTGACAGCGATTCTAAGGCTGAGCCTCAAACAATCAAGATAAACCAAGCAGATAATGGAGCAGGGGCTTCCCAAACTGCTCAGAAGTCGGCTTGCTGTGGATCTTAAGACTGCTACACCAAAGGTGGTTTACTTGCAAGGCAATACAATTAGGTTACTCGCATTTCTTTCTGTCTTTTTTTTCTCTCACTAGTACTGCTATAGTAGAACTCAATTTGGGAGTTCATAGTCAATCCTTATCAGGAAATTAATTATATGGTTCATCTACCACATATCTCATTTCAAACTGAAAAAGAAGTTTCATATTTTCAATATAACTGCTTTCCGTAGTCGAGTTTA

Coding sequence (CDS)

ATGGCTGCTCCACCTGCACGAGCTCGAGCTGATTACGATTATCTCATCAAGCTTCTGCTGATCGGCGACAGCGGTGCGTTAATTTTGCTTTCTTGTTCTGTTCGAGCTTCGATCTTGTGGATAATAGAATATTGTTATAGTTTTTGTTGTGAGAGATGTGTGGGAAAGAGTTGCCTTCTGTTGCGGTTCTCCGACGGCTCCTTCACCACCAGCTTCATCACAACCATAGGCATTGATTTCAAGATTAGAACCATTGAGCTTGATGGAAAACGGATTAAATTGCAAATTTGGGATACCGCTGGTCAGGAGCGGTTTAGAACAATTACAACTGCTTACTATCGTGGAGCCATGGGCATTTTGCTAGTGTACGATGTCACAGACGAGTCATCATTTAACAACATTAGAAATTGGATCCGTAACATTGAACAACATGCTTCTGACAATGTCAACAAGATACTGGTGGGTAACAAGGCTGATATGGATGAGAGCAAAAGGGCCGTTCCTACATCCAAAGGTCAAGCTCTCGCAGATGAGTATGGCATCAAGTTTTTTGAGACTAGTGCAAAGACAAATTTGAATGTGGAAGAAGTTTTCTTCTCCATAGCTAAGGATATTAAACAAAGGCTATCTGACAGCGATTCTAAGGCTGAGCCTCAAACAATCAAGATAAACCAAGCAGATAATGGAGCAGGGGCTTCCCAAACTGCTCAGAAGTCGGCTTGCTGTGGATCTTAA

Protein sequence

MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSACCGS

Homology

[Close]

BLAST of CmoCh06G003180 vs. ExPASy Swiss-Prot
Match: O24466 (Ras-related protein RABE1a OS=Arabidopsis thaliana OX=3702 GN=RABE1A PE=1 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 1.9e-106
Identity = 203/244 (83.20%), Postives = 211/244 (86.48%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MAAPPARARADYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNWIRNIEQHASD+VNKILVGNKADMDESKRAVP SKGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKADMDESKRAVPKSKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 240
           +KFFETSAKTNLNVEEVFFSIAKDIKQRL+D+D++AEPQTIKINQ+D GAG SQ  QKSA
Sbjct: 181 MKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEPQTIKINQSDQGAGTSQATQKSA 216

Query: 241 CCGS 245
           CCG+
Sbjct: 241 CCGT 216

[Close]

BLAST of CmoCh06G003180 vs. ExPASy Swiss-Prot
Match: P28186 (Ras-related protein RABE1c OS=Arabidopsis thaliana OX=3702 GN=RABE1C PE=1 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.6e-105
Identity = 202/244 (82.79%), Postives = 208/244 (85.25%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MAAPPARARADYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 240
           IKFFETSAKTNLNVEEVFFSI +DIKQRLSD+DS+AEP TIKI+Q D  AGA Q  QKSA
Sbjct: 181 IKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGAGQATQKSA 216

Query: 241 CCGS 245
           CCG+
Sbjct: 241 CCGT 216

[Close]

BLAST of CmoCh06G003180 vs. ExPASy Swiss-Prot
Match: Q39433 (Ras-related protein RAB1BV OS=Beta vulgaris OX=161934 GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 3.9e-99
Identity = 197/245 (80.41%), Postives = 204/245 (83.27%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MAAPPARARADYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQ-TIKINQADNGAGASQTAQKS 240
           IKFFETSAKTNLNVEEVFFSIA+DIKQRL+DSD++ E Q +I I  AD     +Q A KS
Sbjct: 181 IKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIKPADQ--SGNQAAAKS 215

Query: 241 ACCGS 245
           ACCGS
Sbjct: 241 ACCGS 215

[Close]

BLAST of CmoCh06G003180 vs. ExPASy Swiss-Prot
Match: Q9LZD4 (Ras-related protein RABE1d OS=Arabidopsis thaliana OX=3702 GN=RABE1D PE=1 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.1e-97
Identity = 189/242 (78.10%), Postives = 202/242 (83.47%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MA  PARAR+DYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAVAPARARSDYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSD +FTTSFITTIGIDFKIRT+ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNW++NIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWMKNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 240
           IKFFETSAKTNLNVE VF SIAKDIKQRL+++D+KAEPQ IKI + D  A +S TA+KSA
Sbjct: 181 IKFFETSAKTNLNVENVFMSIAKDIKQRLTETDTKAEPQGIKITKQDT-AASSSTAEKSA 213

Query: 241 CC 243
           CC
Sbjct: 241 CC 213

[Close]

BLAST of CmoCh06G003180 vs. ExPASy Swiss-Prot
Match: Q9SF91 (Ras-related protein RABE1e OS=Arabidopsis thaliana OX=3702 GN=RABE1E PE=1 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.0e-96
Identity = 189/243 (77.78%), Postives = 202/243 (83.13%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MA  PARAR+DYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAVAPARARSDYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSD +FTTSFITTIGIDFKIRT+ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNW++NIEQHASD+VNKILVGNKADMDESKRAVPTSKGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGNKADMDESKRAVPTSKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQAD-NGAGASQTAQKS 240
           IKFFETSAKTN NVE+VF SIAKDIKQRL++SD+KAEPQ IKI + D N A +S T +KS
Sbjct: 181 IKFFETSAKTNQNVEQVFLSIAKDIKQRLTESDTKAEPQGIKITKQDANKASSSSTNEKS 215

Query: 241 ACC 243
           ACC
Sbjct: 241 ACC 215

[Close]

BLAST of CmoCh06G003180 vs. ExPASy TrEMBL
Match: A0A6J1KYN0 (ras-related protein RABE1a-like OS=Cucurbita maxima OX=3661 GN=LOC111498760 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 8.6e-110
Identity = 216/244 (88.52%), Postives = 216/244 (88.52%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MAAPPARARADYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 240
           IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA
Sbjct: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 216

Query: 241 CCGS 245
           CCGS
Sbjct: 241 CCGS 216

[Close]

BLAST of CmoCh06G003180 vs. ExPASy TrEMBL
Match: A0A6J1F847 (ras-related protein RABE1a-like OS=Cucurbita moschata OX=3662 GN=LOC111441736 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 8.6e-110
Identity = 216/244 (88.52%), Postives = 216/244 (88.52%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MAAPPARARADYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 240
           IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA
Sbjct: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 216

Query: 241 CCGS 245
           CCGS
Sbjct: 241 CCGS 216

[Close]

BLAST of CmoCh06G003180 vs. ExPASy TrEMBL
Match: A0A0A0LA80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734950 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.9e-109
Identity = 215/244 (88.11%), Postives = 216/244 (88.52%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MAAPPARARADYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 240
           IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSK+EPQTIKINQADNGAGASQTAQKSA
Sbjct: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKSEPQTIKINQADNGAGASQTAQKSA 216

Query: 241 CCGS 245
           CCGS
Sbjct: 241 CCGS 216

[Close]

BLAST of CmoCh06G003180 vs. ExPASy TrEMBL
Match: A0A5A7TLI2 (Ras-related protein RABE1c-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001890 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 4.3e-109
Identity = 215/244 (88.11%), Postives = 215/244 (88.11%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MAAPPARARADYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 240
           IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADN AGASQTAQKSA
Sbjct: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNAAGASQTAQKSA 216

Query: 241 CCGS 245
           CCGS
Sbjct: 241 CCGS 216

[Close]

BLAST of CmoCh06G003180 vs. ExPASy TrEMBL
Match: A0A1S3B6S9 (ras-related protein RABE1c-like OS=Cucumis melo OX=3656 GN=LOC103486412 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 4.3e-109
Identity = 215/244 (88.11%), Postives = 215/244 (88.11%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MAAPPARARADYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 240
           IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADN AGASQTAQKSA
Sbjct: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNAAGASQTAQKSA 216

Query: 241 CCGS 245
           CCGS
Sbjct: 241 CCGS 216

[Close]

BLAST of CmoCh06G003180 vs. TAIR 10
Match: AT3G53610.1 (RAB GTPase homolog 8 )

HSP 1 Score: 386.7 bits (992), Expect = 1.4e-107
Identity = 203/244 (83.20%), Postives = 211/244 (86.48%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MAAPPARARADYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNWIRNIEQHASD+VNKILVGNKADMDESKRAVP SKGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKADMDESKRAVPKSKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 240
           +KFFETSAKTNLNVEEVFFSIAKDIKQRL+D+D++AEPQTIKINQ+D GAG SQ  QKSA
Sbjct: 181 MKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEPQTIKINQSDQGAGTSQATQKSA 216

Query: 241 CCGS 245
           CCG+
Sbjct: 241 CCGT 216

[Close]

BLAST of CmoCh06G003180 vs. TAIR 10
Match: AT3G53610.2 (RAB GTPase homolog 8 )

HSP 1 Score: 386.7 bits (992), Expect = 1.4e-107
Identity = 203/244 (83.20%), Postives = 211/244 (86.48%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MAAPPARARADYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNWIRNIEQHASD+VNKILVGNKADMDESKRAVP SKGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKADMDESKRAVPKSKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 240
           +KFFETSAKTNLNVEEVFFSIAKDIKQRL+D+D++AEPQTIKINQ+D GAG SQ  QKSA
Sbjct: 181 MKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEPQTIKINQSDQGAGTSQATQKSA 216

Query: 241 CCGS 245
           CCG+
Sbjct: 241 CCGT 216

[Close]

BLAST of CmoCh06G003180 vs. TAIR 10
Match: AT3G53610.3 (RAB GTPase homolog 8 )

HSP 1 Score: 386.7 bits (992), Expect = 1.4e-107
Identity = 203/244 (83.20%), Postives = 211/244 (86.48%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MAAPPARARADYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNWIRNIEQHASD+VNKILVGNKADMDESKRAVP SKGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKADMDESKRAVPKSKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 240
           +KFFETSAKTNLNVEEVFFSIAKDIKQRL+D+D++AEPQTIKINQ+D GAG SQ  QKSA
Sbjct: 181 MKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEPQTIKINQSDQGAGTSQATQKSA 216

Query: 241 CCGS 245
           CCG+
Sbjct: 241 CCGT 216

[Close]

BLAST of CmoCh06G003180 vs. TAIR 10
Match: AT5G59840.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 385.2 bits (988), Expect = 3.9e-107
Identity = 204/244 (83.61%), Postives = 208/244 (85.25%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MAAPPARARADYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVP SKGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPKSKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 240
           IKFFETSAKTNLNVEEVFFSIAKDIKQRL+D+DS+AEP TIKI+Q D  AGA Q  QKSA
Sbjct: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDSRAEPATIKISQTDQAAGAGQATQKSA 216

Query: 241 CCGS 245
           CCGS
Sbjct: 241 CCGS 216

[Close]

BLAST of CmoCh06G003180 vs. TAIR 10
Match: AT3G46060.1 (RAB GTPase homolog 8A )

HSP 1 Score: 383.6 bits (984), Expect = 1.1e-106
Identity = 202/244 (82.79%), Postives = 208/244 (85.25%), Query Frame = 0


Query: 1   MAAPPARARADYDYLIKLLLIGDSGALILLSCSVRASILWIIEYCYSFCCERCVGKSCLL 60
           MAAPPARARADYDYLIKLLLIGDSG                            VGKSCLL
Sbjct: 1   MAAPPARARADYDYLIKLLLIGDSG----------------------------VGKSCLL 60

Query: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120
           LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL
Sbjct: 61  LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL 120

Query: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG 180
           LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYG
Sbjct: 121 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYG 180

Query: 181 IKFFETSAKTNLNVEEVFFSIAKDIKQRLSDSDSKAEPQTIKINQADNGAGASQTAQKSA 240
           IKFFETSAKTNLNVEEVFFSI +DIKQRLSD+DS+AEP TIKI+Q D  AGA Q  QKSA
Sbjct: 181 IKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGAGQATQKSA 216

Query: 241 CCGS 245
           CCG+
Sbjct: 241 CCGT 216

The following BLAST results are available for this feature:

BLAST of CmoCh06G003180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24466	1.9e-106	83.20	Ras-related protein RABE1a OS=Arabidopsis thaliana OX=3702 GN=RABE1A PE=1 SV=1	[more]
P28186	1.6e-105	82.79	Ras-related protein RABE1c OS=Arabidopsis thaliana OX=3702 GN=RABE1C PE=1 SV=1	[more]
Q39433	3.9e-99	80.41	Ras-related protein RAB1BV OS=Beta vulgaris OX=161934 GN=RAB1BV PE=2 SV=1	[more]
Q9LZD4	2.1e-97	78.10	Ras-related protein RABE1d OS=Arabidopsis thaliana OX=3702 GN=RABE1D PE=1 SV=1	[more]
Q9SF91	1.0e-96	77.78	Ras-related protein RABE1e OS=Arabidopsis thaliana OX=3702 GN=RABE1E PE=1 SV=1	[more]

BLAST of CmoCh06G003180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYN0	8.6e-110	88.52	ras-related protein RABE1a-like OS=Cucurbita maxima OX=3661 GN=LOC111498760 PE=4...	[more]
A0A6J1F847	8.6e-110	88.52	ras-related protein RABE1a-like OS=Cucurbita moschata OX=3662 GN=LOC111441736 PE...	[more]
A0A0A0LA80	1.9e-109	88.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734950 PE=4 SV=1	[more]
A0A5A7TLI2	4.3e-109	88.11	Ras-related protein RABE1c-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3B6S9	4.3e-109	88.11	ras-related protein RABE1c-like OS=Cucumis melo OX=3656 GN=LOC103486412 PE=4 SV=...	[more]

BLAST of CmoCh06G003180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53610.1	1.4e-107	83.20	RAB GTPase homolog 8	[more]
AT3G53610.2	1.4e-107	83.20	RAB GTPase homolog 8	[more]
AT3G53610.3	1.4e-107	83.20	RAB GTPase homolog 8	[more]
AT5G59840.1	3.9e-107	83.61	Ras-related small GTP-binding family protein	[more]
AT3G46060.1	1.1e-106	82.79	RAB GTPase homolog 8A	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 147..160 score: 51.25 coord: 67..83 score: 34.3 coord: 183..205 score: 46.29 coord: 44..65 score: 32.58 coord: 85..107 score: 57.68
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 51..208 e-value: 6.3E-96 score: 334.7
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 49..241 e-value: 2.6E-5 score: 26.1
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 27..209 e-value: 0.0079 score: -3.0
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 51..208 e-value: 9.3E-28 score: 108.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..244
None	No IPR available	PANTHER	PTHR47980	LD44762P	coord: 1..26 coord: 51..242
None	No IPR available	PANTHER	PTHR47980:SF5	BNAA07G37610D PROTEIN	coord: 1..26 coord: 51..242
None	No IPR available	PROSITE	PS51420	RHO	coord: 9..206 score: 10.45158
None	No IPR available	PROSITE	PS51419	RAB	coord: 35..242 score: 34.547165
None	No IPR available	CDD	cd01867	Rab8_Rab10_Rab13_like	coord: 13..208 e-value: 6.10545E-116 score: 326.917
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 53..211 e-value: 2.5E-12 score: 38.0
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 51..206 e-value: 8.2E-62 score: 207.6
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 35..244 score: 19.414391
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 54..198 e-value: 1.8E-27 score: 94.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 9..242 e-value: 1.0E-70 score: 239.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 53..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G003180.1	CmoCh06G003180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009306	protein secretion
biological_process	GO:0017157	regulation of exocytosis
biological_process	GO:0006904	vesicle docking involved in exocytosis
molecular_function	GO:0003925	G protein activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity