CmoCh06G002890 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G002890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein FAR-RED ELONGATED HYPOCOTYL 1-like
Location	Cmo_Chr06: 1439861 .. 1443552 (+)
RNA-Seq Expression	CmoCh06G002890
Synteny	CmoCh06G002890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGAAGGAACATAACCCAACTGAGATCAACAGGTTTGGCATCTGGGTTTTTAAAGATTCTTGCTCTAATCGACTCATTTATCAGTTTTCGAATCTGTTTCTTGTACTGTTTGATGTCTGTTTAATGTCGGTCTAGTGCTAAAACGGTGGATGTGAATCGAGATGGGGTTTTTGATTCATTTCTGTTGCTTAATCTTTTTAGCGTCTGATCATTGGATTTCACTTATTCCCCGTTCTAGAACTTCCCTCAACCCTATATTCATTAAGTAATTTTGTGAGAGATTGAAGCATTTTCTCTTGTAGTTCCTGTCTTGCATCTTTTATCCTGTCTCTTGTCTGATGAATTATGTTGTTTTTTGTTAAACTTTTGCAGTTTCTATGAGATTTCCAAGAAAAGAAAACTGCCAGCTGAACACTTGGGCTTGCCTTCACCAAAACATAAACACAGCAATGAAGCCTCCCCTTCCAAATCTGTCTTTCTTCATGATGGCCTACCCGAAACAGAGCTTATGACTGTACAATTCTCAAAGGGTAATCCAAATGTAATTTGTATCGACGAGGGGTTGACGCCTGAATCGGTAAAAGACAGCAATAGCTTCAGCGACGAGTCCAATTCTGCGACGTCCGTGTTCTGTGGAGCAAAATTGGAACTGAACCAGGCTTTATCTTGCACACGTGATAGTTCTGAAAGCACCCATTTCTGTGTTGGAAGTTCCACAGCAATGGAATCGAGCTCGACCGAACAGGAAGTAGCGTTTGCGAGAGGGGAGAACCAAATGGAAGCAATTCACAAAATTCAGGAGCATATGCTAGTATTGGATAGCCATGAAGAACATGTAAATGATGATCTTGAGCAATGTACAGAGCAGGAACTTGAGGATCTTTTCCGTTCGAATGGGTTGAACCCGAATACATATGTTCTTTCGTCTGGTAGATGGACAGTAAACCACGGTAATAAACACATGATCCATAAGAATTTTGATCCGTTCCATGTGCATTCATATTTATCCATTTACTAAATCACACTCTTCTCTTGATTCAGAAGCTCAATCAAGAGATAGAACACCGACGATCGATCGAGAATTCGAGCAGTTCTTTTCTATGTTGATGCTATAATCGTGAATGCTCGTTTGACTACGAGGTAACAATATGTATATAGTTCAAATGCCATAGTCTTTATGAATTATATGGATATCAATTCCATGTTGTTGCTGTAACTCTGAAGTTTACAGAAACAACAAAATGAAGAATCGAAGCGAGAAAAGAGGAGAGATTCATGAAGAGTTTATACAACAACAGGTTTTATTTGTTCTACAGAAAACAGAGTAAAGGAAGCCCACTCTGTTTCCTTAAAACAGAGCACACACGACGAAGAGGGATAAAGAAAGGAATCTGGGGATGTTTTAAGTTTACAAAGATTGAAGAAAGAACAAAAGGAAAACCCAGAAATCAACACTTTGGAAGATCGGCTGGCGGCGGCCGTAGTTTCTGGTCGGATTTTGGGCCGTCGAGGACAATCCATGCCATTCTCAGCCCCCAGCTCGTGTGGACGTCAAAATGGCAGTGCATGAACCAAACCCCTGTTAACCAAAATTTGAATGTGATTTAAAAATGGAACATTTTGGATGGTGAAAGACAAGTTGTTCCCTCACCTGGGTTATCGGCGAAGAAACGGAAAGCCAACCAGCCGCCGGAGGGAACGCCGGCAGTGTTCCTCTCAACCGGGTCAACCAGATTGAAATTAGCTGGATCCTTATTCATGTCGAAATTCCCAAAACCTTCTCCGACAATAAAGAAATTATATCCATGAAGATGGAGTGGATGACTCTCCGCCCCCAAAATACTCGTCCCCTGCAAAACGACTTCCACGCTCGCATTAAACGGCAGCACTACCACACTCGTACTGTTACTCACAAATGTATTATTGAGCGGCACTCCGGTGTAGTTGAAAGGAAAAACCGGCTTGGCCGGAAAATTAGTTCGGTAAACCCCATTAGTCCGGCGGGAGAAATACGCCTGCAGAATCGCCGTCTTCGGCAGAGCAAAAGAGACATTATTAACAGAGGCAGCGAATTTCGTACCGTTGGGACCTTGACACGTGACGTTTTTCGGACATGGCGCAGTTCCAAGTCCGACGGTGAAGAAAAATTTCCTGTCGACGGTTTGTGGGACATTGGCAGGGAATTTAGCATTGGCAAGAGACCGGAATTTTCTCGAGAAATTGGCGACGAAATTCGTGTCGTTAATTGCCGGGAGATTGGGAAGTTGAGTGGCCGGAGTTTGGGTGGTGGGTGGGTCGCCGTACTGGAGGATTCCGACGGTGGTGGAATTGTCGAAAGTACCCTGGCCAGTGAAGTACGGTCGAGCCGCCATGAGGAAACTGCCGTTGGTGAAATTGGGATTTGTTTTAAGAAGAACATTGGAGGTTTGGCCGGGAGTGAGTAATATCACGTCGGTTTGAAAGGGCTTGACGTAAACGGCGTCGGCTTCGACGACGGTCAGAGAATGGTTGGCGATGGTGAAGAAAAGCTCGTCGTTGAGTGCAGCGTTGATCAACCGGAGTAGGTACGTTTTTCCAGGCTTCACTTTTAGCTTAAATGTATCTGAAAATCAAAATATAATCATTTTTAGTGTTAATTAAACAAGATTAATAGAGAGATTAAAGTGATTACCATTAGAAGAGGAGCAATTATAAAGAGGGCCAGGGAGTCCATTAATGGTGTACGCATCGGAAACATTCGGCGCTGCTCCGGTCTGAAGCGCCTGCTGAATCACACTCTCCGGCCTCACATTGAACCACTCACCCAAAATGATTGGGACTTCTCTGTGGGGCTTCTCGAACGGATATGACTCATTCCGGCGAGGGAGGATGATAATGGCGCCGTGAACTGTGGCTCTCAGCCACGAGATATGGCCGTGCCAAAGCAGAGTCCCTCTTTGGCCGTTGAGTGAAAAATTATAGGTGTAAGCTTGGCCGGTCTGGATCGGACATTGGGTCACATAAGCCGGTCCGTCGGCCCAACCGGTTCGGATCTGCCGGACGCCGTGCCAGTGGATGGTGACGTTCTCAGCCACGTGGTTGATGACCTTGATCAAGACTCTGTCGCCTTCTCTGGCCACCACTGGCGGCCCGGGGAGCTGCCGGTTGACGGTTAGAAGGTTCACCGTATGGCACAGCCTCGTCACGTTCTGGTACCCTATCTGTAAAACCCGCCGCCAGTCATTATTCCACGCTGTTCCGGTGACCTTTTTTTAAATTTTTTTATTTTAAATTTAAAAATAAATAAATAAAAAGAAAAGAAAAACGGCCATACATTGAAAGTGTAGTGTCTGGTTACCCCGAACGCAAGCTCCGGCAAGAAACACGACAGAAGTGAGAGAAAAACAGTCAGTGCCGCCATTGATGAAGGCTCTGAAAGGCGGAAGGCGGCCATGGAAATTCAGTACCTGTGGAAGAAGATGAATAAATGGGGGTTAATAAATAGAGAAAATTTGATTTTTATTTTTAATTTTATAATTTCACACAGTTTAATTTGAACAACCATGATTATGATTTATATTTCTTTAAAATTAAGGAATTTCTTGTTGAATTGTTTCATTTCATCACACTGTTCTTCTTTTTGTCCCTTGTTCTTTTGTAGTTATACATTTAAGTTTAAGTCAAGTTAATTATAGAATATATTTCAT

mRNA sequence

ATGGAGGAGAAGGAACATAACCCAACTGAGATCAACAGTTTCTATGAGATTTCCAAGAAAAGAAAACTGCCAGCTGAACACTTGGGCTTGCCTTCACCAAAACATAAACACAGCAATGAAGCCTCCCCTTCCAAATCTGTCTTTCTTCATGATGGCCTACCCGAAACAGAGCTTATGACTGTACAATTCTCAAAGGGTAATCCAAATGTAATTTGTATCGACGAGGGGTTGACGCCTGAATCGGTAAAAGACAGCAATAGCTTCAGCGACGAGTCCAATTCTGCGACGTCCGTGTTCTGTGGAGCAAAATTGGAACTGAACCAGGCTTTATCTTGCACACGTGATAGTTCTGAAAGCACCCATTTCTGTGTTGGAAGTTCCACAGCAATGGAATCGAGCTCGACCGAACAGGAAGTAGCGTTTGCGAGAGGGGAGAACCAAATGGAAGCAATTCACAAAATTCAGGAGCATATGCTAGTATTGGATAGCCATGAAGAACATGTAAATGATGATCTTGAGCAATGTACAGAGCAGGAACTTGAGGATCTTTTCCGTTCGAATGGGTTGAACCCGAATACATATGTTCTTTCGTCTGGTAGATGGACAGTAAACCACGAAGCTCAATCAAGAGATAGAACACCGACGATCGATCGAGAATTCGAGCAGTTCTTTTCTATGTTGATGCTATAATCGTGAATGCTCGTTTGACTACGAGTTTACAGAAACAACAAAATGAAGAATCGAAGCGAGAAAAGAGGAGAGATTCATGAAGAGTTTATACAACAACAGGTTTTATTTGTTCTACAGAAAACAGAGTAAAGGAAGCCCACTCTGTTTCCTTAAAACAGAGCACACACGACGAAGAGGGATAAAGAAAGGAATCTGGGGATGTTTTAAGTTTACAAAGATTGAAGAAAGAACAAAAGGAAAACCCAGAAATCAACACTTTGGAAGATCGGCTGGCGGCGGCCGTAGTTTCTGGTCGGATTTTGGGCCGTCGAGGACAATCCATGCCATTCTCAGCCCCCAGCTCGTGTGGACGTCAAAATGGCAGTGCATGAACCAAACCCCTGTTAACCAAAATTTGAATGTGATTTAAAAATGGAACATTTTGGATGGTGAAAGACAAGTTGTTCCCTCACCTGGGTTATCGGCGAAGAAACGGAAAGCCAACCAGCCGCCGGAGGGAACGCCGGCAGTGTTCCTCTCAACCGGGTCAACCAGATTGAAATTAGCTGGATCCTTATTCATGTCGAAATTCCCAAAACCTTCTCCGACAATAAAGAAATTATATCCATGAAGATGGAGTGGATGACTCTCCGCCCCCAAAATACTCGTCCCCTGCAAAACGACTTCCACGCTCGCATTAAACGGCAGCACTACCACACTCGTACTGTTACTCACAAATGTATTATTGAGCGGCACTCCGGTGTAGTTGAAAGGAAAAACCGGCTTGGCCGGAAAATTAGTTCGGTAAACCCCATTAGTCCGGCGGGAGAAATACGCCTGCAGAATCGCCGTCTTCGGCAGAGCAAAAGAGACATTATTAACAGAGGCAGCGAATTTCGTACCGTTGGGACCTTGACACGTGACGTTTTTCGGACATGGCGCAGTTCCAAGTCCGACGGTGAAGAAAAATTTCCTGTCGACGGTTTGTGGGACATTGGCAGGGAATTTAGCATTGGCAAGAGACCGGAATTTTCTCGAGAAATTGGCGACGAAATTCGTGTCGTTAATTGCCGGGAGATTGGGAAGTTGAGTGGCCGGAGTTTGGGTGGTGGGTGGGTCGCCGTACTGGAGGATTCCGACGGTGGTGGAATTGTCGAAAGTACCCTGGCCAGTGAAGTACGGTCGAGCCGCCATGAGGAAACTGCCGTTGGTGAAATTGGGATTTGTTTTAAGAAGAACATTGGAGGTTTGGCCGGGAGTGAGTAATATCACGTCGGTTTGAAAGGGCTTGACGTAAACGGCGTCGGCTTCGACGACGGTCAGAGAATGGTTGGCGATGGTGAAGAAAAGCTCGTCGTTGAGTGCAGCGTTGATCAACCGGAGTAGGTACGTTTTTCCAGGCTTCACTTTTAGCTTAAATGTATCTGAAAATCAAAATATAATCATTTTTAGTGTTAATTAAACAAGATTAATAGAGAGATTAAAGTGATTACCATTAGAAGAGGAGCAATTATAAAGAGGGCCAGGGAGTCCATTAATGGTGTACGCATCGGAAACATTCGGCGCTGCTCCGGTCTGAAGCGCCTGCTGAATCACACTCTCCGGCCTCACATTGAACCACTCACCCAAAATGATTGGGACTTCTCTGTGGGGCTTCTCGAACGGATATGACTCATTCCGGCGAGGGAGGATGATAATGGCGCCGTGAACTGTGGCTCTCAGCCACGAGATATGGCCGTGCCAAAGCAGAGTCCCTCTTTGGCCGTTGAGTGAAAAATTATAGGTGTAAGCTTGGCCGGTCTGGATCGGACATTGGGTCACATAAGCCGGTCCGTCGGCCCAACCGGTTCGGATCTGCCGGACGCCGTGCCAGTGGATGGTGACGTTCTCAGCCACGTGGTTGATGACCTTGATCAAGACTCTGTCGCCTTCTCTGGCCACCACTGGCGGCCCGGGGAGCTGCCGGTTGACGGTTAGAAGGTTCACCGTATGGCACAGCCTCGTCACGTTCTGGTACCCTATCTGTAAAACCCGCCGCCAGTCATTATTCCACGCTGTTCCGGTGACCTTTTTTTAAATTTTTTTATTTTAAATTTAAAAATAAATAAATAAAAAGAAAAGAAAAACGGCCATACATTGAAAGTGTAGTGTCTGGTTACCCCGAACGCAAGCTCCGGCAAGAAACACGACAGAAGTGAGAGAAAAACAGTCAGTGCCGCCATTGATGAAGGCTCTGAAAGGCGGAAGGCGGCCATGGAAATTCAGTACCTGTGGAAGAAGATGAATAAATGGGGGTTAATAAATAGAGAAAATTTGATTTTTATTTTTAATTTTATAATTTCACACAGTTTAATTTGAACAACCATGATTATGATTTATATTTCTTTAAAATTAAGGAATTTCTTGTTGAATTGTTTCATTTCATCACACTGTTCTTCTTTTTGTCCCTTGTTCTTTTGTAGTTATACATTTAAGTTTAAGTCAAGTTAATTATAGAATATATTTCAT

Coding sequence (CDS)

ATGGAGGAGAAGGAACATAACCCAACTGAGATCAACAGTTTCTATGAGATTTCCAAGAAAAGAAAACTGCCAGCTGAACACTTGGGCTTGCCTTCACCAAAACATAAACACAGCAATGAAGCCTCCCCTTCCAAATCTGTCTTTCTTCATGATGGCCTACCCGAAACAGAGCTTATGACTGTACAATTCTCAAAGGGTAATCCAAATGTAATTTGTATCGACGAGGGGTTGACGCCTGAATCGGTAAAAGACAGCAATAGCTTCAGCGACGAGTCCAATTCTGCGACGTCCGTGTTCTGTGGAGCAAAATTGGAACTGAACCAGGCTTTATCTTGCACACGTGATAGTTCTGAAAGCACCCATTTCTGTGTTGGAAGTTCCACAGCAATGGAATCGAGCTCGACCGAACAGGAAGTAGCGTTTGCGAGAGGGGAGAACCAAATGGAAGCAATTCACAAAATTCAGGAGCATATGCTAGTATTGGATAGCCATGAAGAACATGTAAATGATGATCTTGAGCAATGTACAGAGCAGGAACTTGAGGATCTTTTCCGTTCGAATGGGTTGAACCCGAATACATATGTTCTTTCGTCTGGTAGATGGACAGTAAACCACGAAGCTCAATCAAGAGATAGAACACCGACGATCGATCGAGAATTCGAGCAGTTCTTTTCTATGTTGATGCTATAA

Protein sequence

MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMTVQFSKGNPNVICIDEGLTPESVKDSNSFSDESNSATSVFCGAKLELNQALSCTRDSSESTHFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLVLDSHEEHVNDDLEQCTEQELEDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML

Homology

[Close]

BLAST of CmoCh06G002890 vs. ExPASy Swiss-Prot
Match: Q8S4Q6 (Protein FAR-RED ELONGATED HYPOCOTYL 1 OS=Arabidopsis thaliana OX=3702 GN=FHY1 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-09
Identity = 67/234 (28.63%), Postives = 97/234 (41.45%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKH--KHSNEASPSKSVFLHDGLPETEL 60
           ++     P+EINSF+           H+ + S K+  K        K  F  D   E  L
Sbjct: 6   VDNNNEKPSEINSFH-----------HMIISSSKNVLKMEEVEVSKKRKFQTDQSDELSL 65

Query: 61  MTVQFSKGNPNVICIDEGLTPESVKDSNSFSDESNSATSVFCGAKLELNQALSCTRDSSE 120
           + +       NV C +       +    S S   NS TS+ C   +E+ +  S       
Sbjct: 66  LPLSKHTCFANVACSENTNGNSEIDTEYSMSSYVNSTTSMECNNDIEMKEESS------- 125

Query: 121 STHFCVGSSTAMESSSTEQEVAFARGENQMEAI-HKIQEHMLVLDSHEEHVNDDLEQCTE 180
                 GS    +  S E  + +  G   +E    K+ E++L LD  EE   +D + C+ 
Sbjct: 126 ------GSCGEDKMISFESHLDYIYGTQNLEDFSEKVIENILYLDEQEEE-EEDAKGCSS 185

Query: 181 QELEDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRT--PTIDREFEQFFSMLML 230
                       N   +VLSSGRWTVN +  +   T  PTID+EFEQ+FS LML
Sbjct: 186 ------------NAAKFVLSSGRWTVNQDDSTLHETKKPTIDQEFEQYFSTLML 202

[Close]

BLAST of CmoCh06G002890 vs. ExPASy Swiss-Prot
Match: A8MR65 (Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE OS=Arabidopsis thaliana OX=3702 GN=FHL PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.1e-06
Identity = 67/217 (30.88%), Postives = 104/217 (47.93%), Query Frame = 0


Query: 16  EISKKRKLPAEHLG-LPSPKHKHSNEASPSKSVFLHDGLPETELMTVQFSKGNPNVICID 75
           + SKKRKL AE    LP PKH      S  ++  ++   P + +   + S    N     
Sbjct: 29  DTSKKRKLHAEESDLLPLPKH----FCSEHQASLVNSSCPSSVIDYAECSYAMEN----- 88

Query: 76  EGLTPESVKDSNSFSDESNSATSVFCGAKLELNQALSCTRDSSESTHFCVGSSTAMESSS 135
                         SDE++S+ S F G  L +       +DS  ST    GSS++  +++
Sbjct: 89  -----------TKTSDEASSSAS-FTGPSLYM------FKDSIYST----GSSSSGYAAT 148

Query: 136 TEQEVAFARGENQMEAIHKIQEHMLVLDSHEEHVNDDLEQCTEQELEDLFRSNGLNP-NT 195
           +  E  F++ +      HK QE      +H E +  D E   E +L+++     LNP  +
Sbjct: 149 SSIEQCFSKVD------HKTQEDTQDF-THMEFIYHDSEFAVE-DLQEV-----LNPVES 201

Query: 196 YVLSSGRWTV-NHEAQSRDRTPTIDREFEQFFSMLML 230
           Y+LSS RW+V N +++     PTID+EFEQ+FS LM+
Sbjct: 209 YILSSARWSVSNQDSKEATTKPTIDQEFEQYFSTLMM 201

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BLAST of CmoCh06G002890 vs. ExPASy TrEMBL
Match: A0A6J1G9S1 (protein FAR-RED ELONGATED HYPOCOTYL 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452097 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 7.5e-124
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT 60
           MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT
Sbjct: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT 60

Query: 61  VQFSKGNPNVICIDEGLTPESVKDSNSFSDESNSATSVFCGAKLELNQALSCTRDSSEST 120
           VQFSKGNPNVICIDEGLTPESVKDSNSFSDESNSATSVFCGAKLELNQALSCTRDSSEST
Sbjct: 61  VQFSKGNPNVICIDEGLTPESVKDSNSFSDESNSATSVFCGAKLELNQALSCTRDSSEST 120

Query: 121 HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLVLDSHEEHVNDDLEQCTEQEL 180
           HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLVLDSHEEHVNDDLEQCTEQEL
Sbjct: 121 HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLVLDSHEEHVNDDLEQCTEQEL 180

Query: 181 EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML 230
           EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML
Sbjct: 181 EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML 229

[Close]

BLAST of CmoCh06G002890 vs. ExPASy TrEMBL
Match: A0A6J1I6X2 (protein FAR-RED ELONGATED HYPOCOTYL 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470174 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.4e-109
Identity = 208/229 (90.83%), Postives = 214/229 (93.45%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPETELMT 60
           MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKH NEA  SKSVFLH GLPETELMT
Sbjct: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKHKHINEAFSSKSVFLHGGLPETELMT 60

Query: 61  VQFSKGNPNVICIDEGLTPESVKDSNSFSDESNSATSVFCGAKLELNQALSCTRDSSEST 120
           VQFSK N NV+CIDEG TPES+KDSNSFSD+S+SATSVFCGAKLELNQALSCT DSSEST
Sbjct: 61  VQFSKSNLNVMCIDEGSTPESLKDSNSFSDQSDSATSVFCGAKLELNQALSCTHDSSEST 120

Query: 121 HFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLVLDSHEEHVNDDLEQCTEQEL 180
           HFCVGSSTAMESSSTEQEVAFA  E++MEAIHKIQEHML LDSHEEHVNDD EQCTEQEL
Sbjct: 121 HFCVGSSTAMESSSTEQEVAFASVESKMEAIHKIQEHMLELDSHEEHVNDDREQCTEQEL 180

Query: 181 EDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDREFEQFFSMLML 230
           EDLFRSNGLNPNTY LSSGRWTVNHEAQSR RTPTID EFEQFFSMLML
Sbjct: 181 EDLFRSNGLNPNTYALSSGRWTVNHEAQSRARTPTIDLEFEQFFSMLML 229

[Close]

BLAST of CmoCh06G002890 vs. ExPASy TrEMBL
Match: A0A0A0LFJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734140 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.2e-81
Identity = 173/256 (67.58%), Postives = 191/256 (74.61%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEIS----------KKRKLPAEHLGLPSPKHKHSNEASPSKSVFLH 60
           MEEKE NP EINSFY IS          KKRKLPAEHLGLPSPKHKH +E   SKS FL+
Sbjct: 92  MEEKEQNPAEINSFYVISKLRSNPFDLNKKRKLPAEHLGLPSPKHKHCSEEFASKSAFLY 151

Query: 61  DGLPETELMTVQFSKGNPNVICIDEGLTPESVKDSNSFSDESNSATSVFCGAKLELNQAL 120
            GLPETE M VQF K N NV+C DE   PESVKDSNS S+ES+SATSVF GAK ELNQA+
Sbjct: 152 GGLPETEHMNVQFIKENANVLCFDEVSRPESVKDSNSLSEESDSATSVFHGAKFELNQAI 211

Query: 121 SCTRD------------SSESTHFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHM 180
           +CT D            SSES HF V SSTAMESSSTEQE AF  GEN+ME I K+QE +
Sbjct: 212 TCTHDTSTTRSMSFGGASSESIHFSVESSTAMESSSTEQETAFPSGENRMETIQKLQEQL 271

Query: 181 LVLDSHE-----EHVNDDLEQCTEQELEDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRT 230
           L LDSHE     E+ NDD +QCT+QELE+LF SNGLNPNTY+LSSGRW +NHEAQSR R 
Sbjct: 272 LELDSHEDYNCAEYENDDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINHEAQSRARA 331

[Close]

BLAST of CmoCh06G002890 vs. ExPASy TrEMBL
Match: A0A6J1F8W9 (uncharacterized protein LOC111441892 OS=Cucurbita moschata OX=3662 GN=LOC111441892 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 7.9e-81
Identity = 172/256 (67.19%), Postives = 193/256 (75.39%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEIS----------KKRKLPAEHLGLPSPKHKHSNEASPSKSVFLH 60
           MEEK+ NP EINSFY IS          KKRKLPAEHLGLPSPKHKH NE  PSK  FL+
Sbjct: 1   MEEKKQNPAEINSFYVISKLQTNPFDLNKKRKLPAEHLGLPSPKHKHCNEGFPSKLAFLY 60

Query: 61  DGLPETELMTVQFSKGNPNVICIDEGLTPESVKDSNSFSDESNSATSVFCGAKLELNQAL 120
           DG PETE M VQF KG+ NV+  D+G +PES KDSNSF +ES+SATSVF GAK ELNQA 
Sbjct: 61  DGFPETEHMNVQFIKGSANVLRFDDGSSPESAKDSNSFCEESDSATSVFHGAKFELNQA- 120

Query: 121 SCTRD------------SSESTHFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHM 180
            CT D            SSESTHF V SSTAMESSSTEQEVAFA GEN++E +HK+QEH+
Sbjct: 121 -CTYDSSSTQCMSFGGASSESTHFSVESSTAMESSSTEQEVAFASGENRIETVHKVQEHL 180

Query: 181 LVLDSHE-----EHVNDDLEQCTEQELEDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRT 230
           L LDS E     E+ +D+ EQCT+QELEDLF SNGL+PN Y+LSSGRWTVNHEAQS  R 
Sbjct: 181 LELDSREDYDFAEYGHDETEQCTDQELEDLFYSNGLDPNAYILSSGRWTVNHEAQSSARA 240

[Close]

BLAST of CmoCh06G002890 vs. ExPASy TrEMBL
Match: A0A5A7TMJ2 (Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001600 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 3.9e-80
Identity = 166/250 (66.40%), Postives = 188/250 (75.20%), Query Frame = 0


Query: 5   EHNPTEINSF--------YEISKKRKLPAEHLGLPSPKHKHSNEASPSKSVFLHDGLPET 64
           E NPTEINSF        Y+++KKRKLPAEHLGLPSPKHKH +E   SKS FL+ GLPET
Sbjct: 68  EENPTEINSFYIISKLNPYDLNKKRKLPAEHLGLPSPKHKHCSEGFASKSAFLYGGLPET 127

Query: 65  ELMTVQFSKGNPNVICIDEGLTPESVKDSNSFSDESNSATSVFCGAKLELNQALSCTRD- 124
             M VQF K N NV+C DEG  PESVKDSNS S+ES+SATSVF GAK ELNQA++CT D 
Sbjct: 128 GHMNVQFIKENANVLCFDEGSRPESVKDSNSLSEESDSATSVFHGAKFELNQAITCTHDT 187

Query: 125 -----------SSESTHFCVGSSTAMESSSTEQEVAFARGENQMEAIHKIQEHMLVLDSH 184
                      SSESTHF V SSTAME  STEQE AF  GEN++E IHK+QEH+L LD H
Sbjct: 188 STTQSMSFGGASSESTHFSVESSTAMELISTEQETAFPSGENRIETIHKLQEHLLELDGH 247

Query: 185 E-----EHVNDDLEQCTEQELEDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRTPTIDRE 230
           E     E+ N D +QCT+QELE+LF SNGLNPNTY+LSSGRW +NHEAQSR R PTID+E
Sbjct: 248 EDYDCAEYENGDTKQCTDQELEELFYSNGLNPNTYILSSGRWAINHEAQSRARAPTIDQE 307

[Close]

BLAST of CmoCh06G002890 vs. TAIR 10
Match: AT2G37678.1 (far-red elongated hypocotyl 1 )

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-10
Identity = 67/234 (28.63%), Postives = 97/234 (41.45%), Query Frame = 0


Query: 1   MEEKEHNPTEINSFYEISKKRKLPAEHLGLPSPKH--KHSNEASPSKSVFLHDGLPETEL 60
           ++     P+EINSF+           H+ + S K+  K        K  F  D   E  L
Sbjct: 6   VDNNNEKPSEINSFH-----------HMIISSSKNVLKMEEVEVSKKRKFQTDQSDELSL 65

Query: 61  MTVQFSKGNPNVICIDEGLTPESVKDSNSFSDESNSATSVFCGAKLELNQALSCTRDSSE 120
           + +       NV C +       +    S S   NS TS+ C   +E+ +  S       
Sbjct: 66  LPLSKHTCFANVACSENTNGNSEIDTEYSMSSYVNSTTSMECNNDIEMKEESS------- 125

Query: 121 STHFCVGSSTAMESSSTEQEVAFARGENQMEAI-HKIQEHMLVLDSHEEHVNDDLEQCTE 180
                 GS    +  S E  + +  G   +E    K+ E++L LD  EE   +D + C+ 
Sbjct: 126 ------GSCGEDKMISFESHLDYIYGTQNLEDFSEKVIENILYLDEQEEE-EEDAKGCSS 185

Query: 181 QELEDLFRSNGLNPNTYVLSSGRWTVNHEAQSRDRT--PTIDREFEQFFSMLML 230
                       N   +VLSSGRWTVN +  +   T  PTID+EFEQ+FS LML
Sbjct: 186 ------------NAAKFVLSSGRWTVNQDDSTLHETKKPTIDQEFEQYFSTLML 202

[Close]

BLAST of CmoCh06G002890 vs. TAIR 10
Match: AT5G02200.1 (far-red-elongated hypocotyl1-like )

HSP 1 Score: 52.8 bits (125), Expect = 4.4e-07
Identity = 67/217 (30.88%), Postives = 104/217 (47.93%), Query Frame = 0


Query: 16  EISKKRKLPAEHLG-LPSPKHKHSNEASPSKSVFLHDGLPETELMTVQFSKGNPNVICID 75
           + SKKRKL AE    LP PKH      S  ++  ++   P + +   + S    N     
Sbjct: 9   DTSKKRKLHAEESDLLPLPKH----FCSEHQASLVNSSCPSSVIDYAECSYAMEN----- 68

Query: 76  EGLTPESVKDSNSFSDESNSATSVFCGAKLELNQALSCTRDSSESTHFCVGSSTAMESSS 135
                         SDE++S+ S F G  L +       +DS  ST    GSS++  +++
Sbjct: 69  -----------TKTSDEASSSAS-FTGPSLYM------FKDSIYST----GSSSSGYAAT 128

Query: 136 TEQEVAFARGENQMEAIHKIQEHMLVLDSHEEHVNDDLEQCTEQELEDLFRSNGLNP-NT 195
           +  E  F++ +      HK QE      +H E +  D E   E +L+++     LNP  +
Sbjct: 129 SSIEQCFSKVD------HKTQEDTQDF-THMEFIYHDSEFAVE-DLQEV-----LNPVES 181

Query: 196 YVLSSGRWTV-NHEAQSRDRTPTIDREFEQFFSMLML 230
           Y+LSS RW+V N +++     PTID+EFEQ+FS LM+
Sbjct: 189 YILSSARWSVSNQDSKEATTKPTIDQEFEQYFSTLMM 181

[Close]

BLAST of CmoCh06G002890 vs. TAIR 10
Match: AT5G02200.2 (far-red-elongated hypocotyl1-like )

HSP 1 Score: 52.8 bits (125), Expect = 4.4e-07
Identity = 67/217 (30.88%), Postives = 104/217 (47.93%), Query Frame = 0


Query: 16  EISKKRKLPAEHLG-LPSPKHKHSNEASPSKSVFLHDGLPETELMTVQFSKGNPNVICID 75
           + SKKRKL AE    LP PKH      S  ++  ++   P + +   + S    N     
Sbjct: 29  DTSKKRKLHAEESDLLPLPKH----FCSEHQASLVNSSCPSSVIDYAECSYAMEN----- 88

Query: 76  EGLTPESVKDSNSFSDESNSATSVFCGAKLELNQALSCTRDSSESTHFCVGSSTAMESSS 135
                         SDE++S+ S F G  L +       +DS  ST    GSS++  +++
Sbjct: 89  -----------TKTSDEASSSAS-FTGPSLYM------FKDSIYST----GSSSSGYAAT 148

Query: 136 TEQEVAFARGENQMEAIHKIQEHMLVLDSHEEHVNDDLEQCTEQELEDLFRSNGLNP-NT 195
           +  E  F++ +      HK QE      +H E +  D E   E +L+++     LNP  +
Sbjct: 149 SSIEQCFSKVD------HKTQEDTQDF-THMEFIYHDSEFAVE-DLQEV-----LNPVES 201

Query: 196 YVLSSGRWTV-NHEAQSRDRTPTIDREFEQFFSMLML 230
           Y+LSS RW+V N +++     PTID+EFEQ+FS LM+
Sbjct: 209 YILSSARWSVSNQDSKEATTKPTIDQEFEQYFSTLMM 201

The following BLAST results are available for this feature:

BLAST of CmoCh06G002890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S4Q6	2.0e-09	28.63	Protein FAR-RED ELONGATED HYPOCOTYL 1 OS=Arabidopsis thaliana OX=3702 GN=FHY1 PE...	[more]
A8MR65	6.1e-06	30.88	Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE OS=Arabidopsis thaliana OX=3702 GN=FH...	[more]

BLAST of CmoCh06G002890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G9S1	7.5e-124	100.00	protein FAR-RED ELONGATED HYPOCOTYL 1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1I6X2	1.4e-109	90.83	protein FAR-RED ELONGATED HYPOCOTYL 1-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A0A0LFJ8	1.2e-81	67.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734140 PE=4 SV=1	[more]
A0A6J1F8W9	7.9e-81	67.19	uncharacterized protein LOC111441892 OS=Cucurbita moschata OX=3662 GN=LOC1114418...	[more]
A0A5A7TMJ2	3.9e-80	66.40	Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like isoform X2 OS=Cucumis melo var. ...	[more]

BLAST of CmoCh06G002890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37678.1	1.4e-10	28.63	far-red elongated hypocotyl 1	[more]
AT5G02200.1	4.4e-07	30.88	far-red-elongated hypocotyl1-like	[more]
AT5G02200.2	4.4e-07	30.88	far-red-elongated hypocotyl1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..45
None	No IPR available	PANTHER	PTHR37723:SF1	PROTEIN FAR-RED ELONGATED HYPOCOTYL 1	coord: 1..229
IPR037766	Protein FAR-RED ELONGATED HYPOCOTYL 1	PANTHER	PTHR37723	PROTEIN FAR-RED ELONGATED HYPOCOTYL 1	coord: 1..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G002890.1	CmoCh06G002890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051457	maintenance of protein location in nucleus
biological_process	GO:0009639	response to red or far red light
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus