CmoCh06G002460 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G002460
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DUF962 domain-containing protein
Location	Cmo_Chr06: 1284134 .. 1284472 (+)
RNA-Seq Expression	CmoCh06G002460
Synteny	CmoCh06G002460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTCAGAAGTTTGGATGAGTTCTGGGTTTTCTATATGAACCAGCACTCAAAACCCTCGACGAGGCGATGGCACTTTATTGGAACTCTGTCTTCTATCTTCTTCTTTCTTTGCTCTTTACTGTTTAGCTGGTGGTTCCTGTTCTTTGTGCCTTTGACTGGATATGGATTCGCGTGGTACAGCCATTTCTTCGTCGAGGAAAATGTTCCTGCTTCCTTCGGTCATCCATTTTGGTCTCTTCTTTGTGATTTCAAGATGTTTGGATTGATGCTTACTGGGAACATGGACAGGGAAATCAAGAGGCTGGGGAAAAGACCTGTGTTGCAGGCGTTCTAA

mRNA sequence

ATGAATTTCAGAAGTTTGGATGAGTTCTGGGTTTTCTATATGAACCAGCACTCAAAACCCTCGACGAGGCGATGGCACTTTATTGGAACTCTGTCTTCTATCTTCTTCTTTCTTTGCTCTTTACTGTTTAGCTGGTGGTTCCTGTTCTTTGTGCCTTTGACTGGATATGGATTCGCGTGGTACAGCCATTTCTTCGTCGAGGAAAATGTTCCTGCTTCCTTCGGTCATCCATTTTGGTCTCTTCTTTGTGATTTCAAGATGTTTGGATTGATGCTTACTGGGAACATGGACAGGGAAATCAAGAGGCTGGGGAAAAGACCTGTGTTGCAGGCGTTCTAA

Coding sequence (CDS)

ATGAATTTCAGAAGTTTGGATGAGTTCTGGGTTTTCTATATGAACCAGCACTCAAAACCCTCGACGAGGCGATGGCACTTTATTGGAACTCTGTCTTCTATCTTCTTCTTTCTTTGCTCTTTACTGTTTAGCTGGTGGTTCCTGTTCTTTGTGCCTTTGACTGGATATGGATTCGCGTGGTACAGCCATTTCTTCGTCGAGGAAAATGTTCCTGCTTCCTTCGGTCATCCATTTTGGTCTCTTCTTTGTGATTTCAAGATGTTTGGATTGATGCTTACTGGGAACATGGACAGGGAAATCAAGAGGCTGGGGAAAAGACCTGTGTTGCAGGCGTTCTAA

Protein sequence

MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAWYSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF

Homology

[Close]

BLAST of CmoCh06G002460 vs. ExPASy TrEMBL
Match: A0A6J1I767 (uncharacterized protein LOC111470232 OS=Cucurbita maxima OX=3661 GN=LOC111470232 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.3e-60
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of CmoCh06G002460 vs. ExPASy TrEMBL
Match: A0A6J1G2W8 (uncharacterized protein LOC111450283 OS=Cucurbita moschata OX=3662 GN=LOC111450283 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.3e-60
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of CmoCh06G002460 vs. ExPASy TrEMBL
Match: A0A6J1CWL4 (uncharacterized protein LOC111015066 OS=Momordica charantia OX=3673 GN=LOC111015066 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.9e-59
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLFFVPL GYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFFVPLFGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of CmoCh06G002460 vs. ExPASy TrEMBL
Match: A0A1S4DUQ8 (uncharacterized protein LOC103486326 OS=Cucumis melo OX=3656 GN=LOC103486326 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.2e-59
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLF VPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVEENVPA+FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPATFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of CmoCh06G002460 vs. ExPASy TrEMBL
Match: A0A5A7TMP5 (DUF962 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001060 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.2e-59
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLS+IFFFLCSLLFSWWFLF VPLTGYGFAW
Sbjct: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSAIFFFLCSLLFSWWFLFLVPLTGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 113
           YSHFFVEENVPA+FGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF
Sbjct: 61  YSHFFVEENVPATFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQAF 112

[Close]

BLAST of CmoCh06G002460 vs. TAIR 10
Match: AT3G09085.1 (Protein of unknown function (DUF962) )

HSP 1 Score: 180.3 bits (456), Expect = 8.8e-46
Identity = 82/110 (74.55%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MNFRSLDEFWVFYMNQHSKPSTRRWHFIGTLSSIFFFLCSLLFSWWFLFFVPLTGYGFAW 60
           MNFRS +EFW FYM QHS PSTRR HFIG ++SI   +CS+L +WWFL  VPL GYGFAW
Sbjct: 1   MNFRSFEEFWPFYMMQHSNPSTRRLHFIGIIASIVALICSILINWWFLALVPLLGYGFAW 60

Query: 61  YSHFFVEENVPASFGHPFWSLLCDFKMFGLMLTGNMDREIKRLGKRPVLQ 111
           YSHFFVE NVPASFGHP WS LCD KMF LMLTG+M+RE+KRLGKRP+LQ
Sbjct: 61  YSHFFVEGNVPASFGHPLWSFLCDLKMFSLMLTGSMEREMKRLGKRPLLQ 110

The following BLAST results are available for this feature:

BLAST of CmoCh06G002460 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G002460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I767	1.3e-60	100.00	uncharacterized protein LOC111470232 OS=Cucurbita maxima OX=3661 GN=LOC111470232...	[more]
A0A6J1G2W8	1.3e-60	100.00	uncharacterized protein LOC111450283 OS=Cucurbita moschata OX=3662 GN=LOC1114502...	[more]
A0A6J1CWL4	1.9e-59	98.21	uncharacterized protein LOC111015066 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A1S4DUQ8	3.2e-59	97.32	uncharacterized protein LOC103486326 OS=Cucumis melo OX=3656 GN=LOC103486326 PE=...	[more]
A0A5A7TMP5	3.2e-59	97.32	DUF962 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of CmoCh06G002460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09085.1	8.8e-46	74.55	Protein of unknown function (DUF962)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009305	2-hydroxy-palmitic acid dioxygenase Mpo1-like	PFAM	PF06127	DUF962	coord: 3..96 e-value: 3.4E-28 score: 97.6
None	No IPR available	PANTHER	PTHR34205	TRANSMEMBRANE PROTEIN	coord: 3..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G002460.1	CmoCh06G002460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane