CmoCh06G002250 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G002250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Mitochondrial inner membrane protease subunit 2
Location	Cmo_Chr06: 1204585 .. 1208686 (+)
RNA-Seq Expression	CmoCh06G002250
Synteny	CmoCh06G002250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGTTCGCGCCTTCGTTTACTGTATGGTTAGGGTTTGGCGCTGAGTGAGTGCAGCGATCACCAGCGGATTTGGCGAACAATATCTTCTATTGAATTCTTCCGTATCTCTCAGCGTCGATTTCCCGCTTCCTGTTCTCATAATATTCTTTAATCTTTTCAACGTAGTTGAGGAATTCAACTGGGATAATTGGGCTGCTTGCCGGAAGGCTTGCGGATTCTGTCTGTTGTGTACTGTCAATTTTTAGGTAAACTCGACGAATTGCGCCTGTCTGGTAAGTTTCATCGAATTTCTTCCGGTTCGAGTTCGACCTTTATGATTGCTTTGATTCTGTTCTGCAAGCTCAAAATTCGAATTGACAAGAAATGTTATTGTTTGCGTACTTTGAATTTTTTTTTGGGTTCTTATTTCATTATAGATTTTTCCATGTTGCAGTTACTGAACTCCCATTTCGCACTTGATATGCATCTAGTTGGTATACTTTGGAAATGGCAAATCGAAGTTTAGTGTGGAACGTTGCGAAGAAATGTTTCACACTTGGAATTATTGGCGTTACGATTTCGGATCGTTATGCGAGTGTTGTCCCTATCCGGGGTGCTTCAATGTCTCCCACTTTTAATCCTAGAGCCACTTCTCTGGCAGGACCAGTTAGTGGTAATTTTCTAAAGGTTGCATATTTGTTTTAGCGAGGACTTGATACCATCTGATGCTTGGGTTTGGTTTCAGATGACTACGTGCTGGTTGAGAAGTTTTGCCTTGATAAGTTTCAATTTTCTCCCGGTGACGTGATTGTTTACCGGTAAGTTTCCCTCCTGCGCCTAATTTCGTTATCTGCATTGTCTTGTTCTGGACACTTATATTGTGTTTTGTGGTATTGGCTTGATTTAGTTCCTCTTTTATTGGATGGTGAAGGCTGCTCTAGATTAAGAAAGAAAATGGCCTATGTAAACCCACATTATCCTTTCCATCGTTCTCTCTCAAATTATATAGTAGTATGATCCAGTGCATTGTATGTAGATAGTCTTGCTCGATTGGGATTGCTCAGGGTTTGAATCTTAATGAGTTGAGGCTAGATAATTTAAGATTTGGATTGGCTCTTCTTGGTTGACTTTTGAACATTATTAGTTTGTAGGCCCATTTGATTAATCATCGCTGAGAGATCACATTTGGACTCCAATTTAATAACTTCCAAGAATAAAGACAGAGAACTCAAAAGTAAGAAAAACTCAATTCCATTACTTGCAATTTGCATAGAACGAAATGATTACTCTTTGCATTTGCGTATTCAATATGGGGGTCAAGTTTTGTGGCCTCTTTGTAGTCCTTTGGGGCAATTGGATCAAGAGGAATAAGACCTTTTAGGGATCGTGAGAGACCTTGGGAGGAGGTGTGGTCACTCTATTTGGACATCGTTTTCCAAGTATTTTTGTACTTATCTGCTAGATCTAATTATTATGAACTGGAGATCTTTTTTTTTCTTTGTTTTTGTATAGCTAGGTGGTTGCCTTCTCTTAGTGTGCAGTATTTTTGTGTGTCCTTTTGTATTCTTTCATTTTGTCTCAATAAAAGCTTGTTTCCTCATGAACAAAAATGGTCATTTTTTGTGAAAGAAATAGTACGAATTATATTTACGTCGTCATATTTGAATTAATCGAAGGTAATGGATAGCATAGTGATCCATCTCGCTCCTGAATTGTAATAGTCTTGATGATGTAATTGGTAAATGTATGTGATTGAAAGCATGCCAAGAGTGTAAGATAGATAAAAAGCCTTCATTGTTTCCTGCGCTGTTTAGAGATTGTAACCTCCAAGTCCTCTTCTTCCCAAATTTACCGCACCCCAAATTTTGACAGTATTACAACGTAACTGTGGTAATTTCCCAAATATTGAGCACCTGATAAAGAAATACTAAGCTCCAACTCAAGAACTAACAGTTAACTTCAAATTACCTGAATATAAAGAACTCTTTCAAGCTTATCCAACTTTAACAAAATTTCTAAGAACAAGCCAACTTCCAAACAATGATACAACTCAAATGCCAGTCCCAAAATGAATCATCAACACTGAACAGTAACTCAAACCATAAATGAACTAACCAACTCGTACTAATGTAAGTTCCCAACTAAAACCAACTATTAAGAAGATAGAATAACTAGCTAATGGTCTCAAAATTTGGTGGTGAGTTCATCATAATGCATACTCAGTAAGTGGCTCACGCATGAGGAGTCATCAAACAACATACAACCTAGAAAACAAACATAATGCTTCTCTCATACAACTAAACATGCTCTTTGCACATAAAACAAGTAAAACATTCAACATGCTCAACACTTGCATCAATACATCATGTCATGTGCACTCAATCCTCACGCAAGGTCAACCAGCTCATTTGACTCCACTGAGTCACTCAACACTAATATTTAGCTCTCACAAAGCTACATGAGACTGACTCTTTCGAGTTATGTCAATGGTCTACCACCCTGACCATTTTTACCTGAGGCACAATGGTATTTACCCAACTTTTCTTCATCACACACAAGGTCCTCTGACATCGTACAATCTCACTAAAATGCATTATCCTACACAACCATCATGCCTTTTCAGACAATATCAGCATTTCAGCATGCTCATCACAACATAGTCAACAAACAACAGGCTCAAAAATTATCAAAGGTCACATTTCATTAACTTAAGTCACATATCCACCACAAACACAATATGTTCAACATCTCAAAAACACCACATAACCTATCACAACACGATATTTCAGCATGCTTAAACACTCAAGGAGACATAATAATTCAAAGAGACATGCTTCACATGATGTAGTTAGAAAAGTTGGTAGGCACACACCAAACAACTCCACAAGTGGAAACTACTAACTTAAAGTGCTCCTAATATAATCCAGTAGATTCCTACGCAACAAGTACAAGGCTTAGTGGTCAGAAATTAGTTTGACGACCTTAATTGAAATTGAAAGAGTATTTAGGAGAGGCGTCCTTACCCAAAATCACTCTTAAACTGAGTTCGAACAATCCTGAACTGAACTGAATCCTGAAACAAAATGTATTCACTGGTGTGGGTTTGTGGCTAAGGTGTCGTTGAGGATAAAATTTACTCTCAGAGACTTGAACAATTTGATTAAAATTTCCTTCCCTAAATCGTTGACCTATTGCAGATCCCCTAGTAATTACAAGGAGAAACATGTGAAAAGAGTTATTGCCTTACCAGGAGATTGGGTTGGAACTCGTCAAACATATGACGTTGTAAAGGTTCCAGAAGGACACTGTTGGGTTGAAGGTGATAATTCAGATTGCAGCATGGACTCGAGATCTTTTGGCCCGGTAAGATACCATCTTCTATAGTTAACATTCTGTTTCTTTTGGGTCGTGCTATTAGTTTTGAGATGCAACCAGAGTTTATGTGGATTGGTAGCCTCGATGGATCTTTAATTCTTCATGTAACAATTGTTGGGAATTGAAAAAACACAGGTGAAAGTATCATACGAAAGAGCATTAAGAAAATATAGATAATTAATTTACTGTTTCCAGAGAAATACTTTACTGCAAGTATCTGAGATTTGAGTTCAACTCCCTTTTTACTGCTTTTGAGACATGTCTAGCCCAGCCTGACTGAACTAAGCCTTTTGCTGGCAGATACCAATGGGTTTGATTCAAGGTAGGGTGTCACATATTGTATGGCCACCTCAAAGAATTGGTGCCGTTGAGAGAATATACCCTCAGGGGAGAGTCAAGTCCTACTGATAATACCAAAATTGAAGGTAGAGAACAGTTTTCCATGATCGAATACTCCTATTTGTGGTCTTTTACATTAGGTAGAAATTTTTTAGACCTGGAGACCTTTTCTGCGGTGATTTCTATCTATCACTTTCGGTTATGTTATTTTTTCTTCATAACATACATTATTTTCATTCTTGGGGTATTTTCAATGTAATACCCGTATCCGGAGGAACCTGTATTTCAGTAACGATTGAACTTAACCTCACGTATGCACGAATCCCGTCGCTTAAGTTTCCTGGTAAAATCAAATGGAAAAATCTTACTAGTGCCCTATCAACTGGAATTTTGGGAGGAGAATCGTAA

mRNA sequence

CTCGTTCGCGCCTTCGTTTACTGTATGGTTAGGGTTTGGCGCTGAGTGAGTGCAGCGATCACCAGCGGATTTGGCGAACAATATCTTCTATTGAATTCTTCCGTATCTCTCAGCGTCGATTTCCCGCTTCCTGTTCTCATAATATTCTTTAATCTTTTCAACGTAGTTGAGGAATTCAACTGGGATAATTGGGCTGCTTGCCGGAAGGCTTGCGGATTCTGTCTGTTGTGTACTGTCAATTTTTAGGTAAACTCGACGAATTGCGCCTGTCTGATTTTTCCATGTTGCAGTTACTGAACTCCCATTTCGCACTTGATATGCATCTAGTTGGTATACTTTGGAAATGGCAAATCGAAGTTTAGTGTGGAACGTTGCGAAGAAATGTTTCACACTTGGAATTATTGGCGTTACGATTTCGGATCGTTATGCGAGTGTTGTCCCTATCCGGGGTGCTTCAATGTCTCCCACTTTTAATCCTAGAGCCACTTCTCTGGCAGGACCAGTTAGTGATGACTACGTGCTGGTTGAGAAGTTTTGCCTTGATAAGTTTCAATTTTCTCCCGGTGACGTGATTGTTTACCGATCCCCTAGTAATTACAAGGAGAAACATGTGAAAAGAGTTATTGCCTTACCAGGAGATTGGGTTGGAACTCGTCAAACATATGACGTTGTAAAGGTTCCAGAAGGACACTGTTGGGTTGAAGGTGATAATTCAGATTGCAGCATGGACTCGAGATCTTTTGGCCCGATACCAATGGGTTTGATTCAAGGTAGGGTGTCACATATTGTATGGCCACCTCAAAGAATTGGTGCCGTTGAGAGAATATACCCTCAGGGGAGAGTCAAACCTGGAGACCTTTTCTGCGGTGATTTCTATCTATCACTTTCGGTTATGTTATTTTTTCTTCATAACATACATTATTTTCATTCTTGGGGTATTTTCAATGTAATACCCGTATCCGGAGGAACCTGTATTTCAGTAACGATTGAACTTAACCTCACGTATGCACGAATCCCGTCGCTTAAGTTTCCTGGTAAAATCAAATGGAAAAATCTTACTAGTGCCCTATCAACTGGAATTTTGGGAGGAGAATCGTAA

Coding sequence (CDS)

ATGGCAAATCGAAGTTTAGTGTGGAACGTTGCGAAGAAATGTTTCACACTTGGAATTATTGGCGTTACGATTTCGGATCGTTATGCGAGTGTTGTCCCTATCCGGGGTGCTTCAATGTCTCCCACTTTTAATCCTAGAGCCACTTCTCTGGCAGGACCAGTTAGTGATGACTACGTGCTGGTTGAGAAGTTTTGCCTTGATAAGTTTCAATTTTCTCCCGGTGACGTGATTGTTTACCGATCCCCTAGTAATTACAAGGAGAAACATGTGAAAAGAGTTATTGCCTTACCAGGAGATTGGGTTGGAACTCGTCAAACATATGACGTTGTAAAGGTTCCAGAAGGACACTGTTGGGTTGAAGGTGATAATTCAGATTGCAGCATGGACTCGAGATCTTTTGGCCCGATACCAATGGGTTTGATTCAAGGTAGGGTGTCACATATTGTATGGCCACCTCAAAGAATTGGTGCCGTTGAGAGAATATACCCTCAGGGGAGAGTCAAACCTGGAGACCTTTTCTGCGGTGATTTCTATCTATCACTTTCGGTTATGTTATTTTTTCTTCATAACATACATTATTTTCATTCTTGGGGTATTTTCAATGTAATACCCGTATCCGGAGGAACCTGTATTTCAGTAACGATTGAACTTAACCTCACGTATGCACGAATCCCGTCGCTTAAGTTTCCTGGTAAAATCAAATGGAAAAATCTTACTAGTGCCCTATCAACTGGAATTTTGGGAGGAGAATCGTAA

Protein sequence

MANRSLVWNVAKKCFTLGIIGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVLVEKFCLDKFQFSPGDVIVYRSPSNYKEKHVKRVIALPGDWVGTRQTYDVVKVPEGHCWVEGDNSDCSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVERIYPQGRVKPGDLFCGDFYLSLSVMLFFLHNIHYFHSWGIFNVIPVSGGTCISVTIELNLTYARIPSLKFPGKIKWKNLTSALSTGILGGES

Homology

[Close]

BLAST of CmoCh06G002250 vs. ExPASy Swiss-Prot
Match: Q6AZD4 (Mitochondrial inner membrane protease subunit 2 OS=Danio rerio OX=7955 GN=immp2l PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.7e-28
Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = 0


Query: 20  IGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVLVEKFCLDKFQFSPGDVIVY 79
           + VT+ DR A V  + GASM P+ NP      G  S D VL+ ++ +  +    GD++  
Sbjct: 24  VTVTVLDRLAYVARVEGASMQPSLNP-----DGESSPDVVLLNRWSVRNYHVQRGDIVSV 83

Query: 80  RSPSNYKEKHVKRVIALPGDWV---GTRQTYDVVKVPEGHCWVEGDNSDCSMDSRSFGPI 139
            SP N ++K +KRVI + GD++   G +  Y  V+VP+GH W+EGD+   S DS +FGP+
Sbjct: 84  LSPKNPQQKIIKRVIGIEGDFIKTLGYKNRY--VRVPDGHLWIEGDHHGHSFDSNAFGPV 143

Query: 140 PMGLIQGRVSHIVWPPQRIGAVERIYPQGR 167
            +GL+ GR SHI+WPP R   +E   P  R
Sbjct: 144 SLGLVHGRASHIIWPPSRWQRIEPSVPPDR 166

[Close]

BLAST of CmoCh06G002250 vs. ExPASy Swiss-Prot
Match: Q2KI92 (Mitochondrial inner membrane protease subunit 2 OS=Bos taurus OX=9913 GN=IMMP2L PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.2e-28
Identity = 65/151 (43.05%), Postives = 88/151 (58.28%), Query Frame = 0


Query: 20  IGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVLVEKFCLDKFQFSPGDVIVY 79
           + VT  DR A V  + GASM P+ NP      G  S D VL+  + +  F+   GD++  
Sbjct: 25  VAVTFLDRVACVARVEGASMQPSLNP-----GGSQSSDVVLLNHWKVRNFEVQRGDIVSL 84

Query: 80  RSPSNYKEKHVKRVIALPGDWV---GTRQTYDVVKVPEGHCWVEGDNSDCSMDSRSFGPI 139
            SP N ++K +KRVIAL GD V   G +  Y  VKVP GH WVEGD+   S DS SFGP+
Sbjct: 85  VSPKNPEQKIIKRVIALEGDIVKTMGHKNRY--VKVPRGHIWVEGDHHGHSFDSNSFGPV 144

Query: 140 PMGLIQGRVSHIVWPPQRIGAVERIYPQGRV 168
            +GL+    +HI+WPP+R   +E + P  R+
Sbjct: 145 SLGLLHAHATHILWPPKRWQKLESVLPPERL 168

[Close]

BLAST of CmoCh06G002250 vs. ExPASy Swiss-Prot
Match: Q96T52 (Mitochondrial inner membrane protease subunit 2 OS=Homo sapiens OX=9606 GN=IMMP2L PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.2e-28
Identity = 64/151 (42.38%), Postives = 88/151 (58.28%), Query Frame = 0


Query: 20  IGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVLVEKFCLDKFQFSPGDVIVY 79
           + VT  DR A V  + GASM P+ NP      G  S D VL+  + +  F+   GD++  
Sbjct: 25  VAVTFLDRVACVARVEGASMQPSLNP-----GGSQSSDVVLLNHWKVRNFEVHRGDIVSL 84

Query: 80  RSPSNYKEKHVKRVIALPGD---WVGTRQTYDVVKVPEGHCWVEGDNSDCSMDSRSFGPI 139
            SP N ++K +KRVIAL GD    +G +  Y  VKVP GH WVEGD+   S DS SFGP+
Sbjct: 85  VSPKNPEQKIIKRVIALEGDIVRTIGHKNRY--VKVPRGHIWVEGDHHGHSFDSNSFGPV 144

Query: 140 PMGLIQGRVSHIVWPPQRIGAVERIYPQGRV 168
            +GL+    +HI+WPP+R   +E + P  R+
Sbjct: 145 SLGLLHAHATHILWPPERWQKLESVLPPERL 168

[Close]

BLAST of CmoCh06G002250 vs. ExPASy Swiss-Prot
Match: Q8BPT6 (Mitochondrial inner membrane protease subunit 2 OS=Mus musculus OX=10090 GN=Immp2l PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-27
Identity = 63/148 (42.57%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 20  IGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVLVEKFCLDKFQFSPGDVIVY 79
           + VT  DR A V  + G+SM P+ NP      G  S D VL+  + +  F+   GD++  
Sbjct: 25  VAVTFLDRVACVARVEGSSMQPSLNP-----GGSQSSDVVLLNHWKVRNFEVQRGDIVSL 84

Query: 80  RSPSNYKEKHVKRVIALPGDWVGT-RQTYDVVKVPEGHCWVEGDNSDCSMDSRSFGPIPM 139
            SP N ++K +KRVIAL GD V T      +VKVP GH WVEGD+   S DS SFGP+ +
Sbjct: 85  VSPKNPEQKIIKRVIALEGDIVRTIGHKNRLVKVPRGHMWVEGDHHGHSFDSNSFGPVSL 144

Query: 140 GLIQGRVSHIVWPPQRIGAVERIYPQGR 167
           GL+    +HI+WPP+R   +E + P  R
Sbjct: 145 GLLHAHATHILWPPERWQRLESVLPPER 167

[Close]

BLAST of CmoCh06G002250 vs. ExPASy Swiss-Prot
Match: Q5PQ63 (Mitochondrial inner membrane protease subunit 2 OS=Xenopus laevis OX=8355 GN=immp2l PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.5e-24
Identity = 59/150 (39.33%), Postives = 82/150 (54.67%), Query Frame = 0


Query: 20  IGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVLVEKFCLDKFQFSPGDVIVY 79
           + VT  DR A +  + G SM P+ NP A         D VL+ ++    +    GD++  
Sbjct: 22  VTVTFLDRVACIARVEGVSMQPSLNPDARG-----ESDIVLLNRWRARNYDVQRGDIVSL 81

Query: 80  RSPSNYKEKHVKRVIALPGDWV---GTRQTYDVVKVPEGHCWVEGDNSDCSMDSRSFGPI 139
            SP N ++K +KRVIAL GD V   G +  Y  VKVP GH WVEGD+   S DS +FGP+
Sbjct: 82  VSPKNPEQKIIKRVIALEGDIVKTLGHKNRY--VKVPRGHVWVEGDHHGHSFDSNAFGPV 141

Query: 140 PMGLIQGRVSHIVWPPQRIGAVERIYPQGR 167
            +GL+    +HI+WPP R   ++   P  R
Sbjct: 142 SLGLLHSHATHILWPPNRWQKLKPFLPVER 164

[Close]

BLAST of CmoCh06G002250 vs. ExPASy TrEMBL
Match: A0A6J1GA60 (Mitochondrial inner membrane protease subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111452339 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.7e-95
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MANRSLVWNVAKKCFTLGIIGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVL 60
           MANRSLVWNVAKKCFTLGIIGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVL
Sbjct: 1   MANRSLVWNVAKKCFTLGIIGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVL 60

Query: 61  VEKFCLDKFQFSPGDVIVYRSPSNYKEKHVKRVIALPGDWVGTRQTYDVVKVPEGHCWVE 120
           VEKFCLDKFQFSPGDVIVYRSPSNYKEKHVKRVIALPGDWVGTRQTYDVVKVPEGHCWVE
Sbjct: 61  VEKFCLDKFQFSPGDVIVYRSPSNYKEKHVKRVIALPGDWVGTRQTYDVVKVPEGHCWVE 120

Query: 121 GDNSDCSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVERIYPQGRVK 169
           GDNSDCSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVERIYPQGRVK
Sbjct: 121 GDNSDCSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVERIYPQGRVK 168

[Close]

BLAST of CmoCh06G002250 vs. ExPASy TrEMBL
Match: A0A6J1I8V8 (Mitochondrial inner membrane protease subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111470229 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.7e-92
Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = 0


Query: 1   MANRSLVWNVAKKCFTLGIIGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVL 60
           MANRSLVWNVA+KCFTLGIIGVT+SDRYASVVPIRGASMSPTFNPRATS AGPVSDDYVL
Sbjct: 1   MANRSLVWNVARKCFTLGIIGVTVSDRYASVVPIRGASMSPTFNPRATSPAGPVSDDYVL 60

Query: 61  VEKFCLDKFQFSPGDVIVYRSPSNYKEKHVKRVIALPGDWVGTRQTYDVVKVPEGHCWVE 120
           VEKFCL+KFQFSPGDVIVYRSPSNYKEKHVKRVIALPGDWVGTRQTYDVVKVPEGHCWVE
Sbjct: 61  VEKFCLEKFQFSPGDVIVYRSPSNYKEKHVKRVIALPGDWVGTRQTYDVVKVPEGHCWVE 120

Query: 121 GDNSDCSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVERIYPQGRVK 169
           GDNSDCSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVER YPQGRVK
Sbjct: 121 GDNSDCSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVERKYPQGRVK 168

[Close]

BLAST of CmoCh06G002250 vs. ExPASy TrEMBL
Match: A0A6J1CW41 (Mitochondrial inner membrane protease subunit 2 OS=Momordica charantia OX=3673 GN=LOC111014939 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.4e-86
Identity = 150/168 (89.29%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MANRSLVWNVAKKCFTLGIIGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVL 60
           MANRSLVW VAKKCFT GIIGVT+SDRYAS+VP+RGASMSPTFNPRATS AG V+ DYVL
Sbjct: 1   MANRSLVWGVAKKCFTFGIIGVTVSDRYASIVPLRGASMSPTFNPRATSQAGAVTGDYVL 60

Query: 61  VEKFCLDKFQFSPGDVIVYRSPSNYKEKHVKRVIALPGDWVGTRQTYDVVKVPEGHCWVE 120
           VEKFCL+K++FSPGDVIVY SPSNYKEKHVKR+IALPGDWVGTRQTYDVVKVPEGHCWVE
Sbjct: 61  VEKFCLEKYKFSPGDVIVYCSPSNYKEKHVKRIIALPGDWVGTRQTYDVVKVPEGHCWVE 120

Query: 121 GDNSDCSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVERIYPQGRVK 169
           GDN++CSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVER YPQGR+K
Sbjct: 121 GDNAECSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVERKYPQGRIK 168

[Close]

BLAST of CmoCh06G002250 vs. ExPASy TrEMBL
Match: A0A0A0LFB4 (Mitochondrial inner membrane protease subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_3G731770 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.4e-83
Identity = 147/169 (86.98%), Postives = 156/169 (92.31%), Query Frame = 0


Query: 1   MANRSLVWNVAKKCFTLGIIGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVL 60
           MANR+LVWNV KK FT GIIGVTISDRYASVVPIRGASMSPTFNP ATSL GP++ DYVL
Sbjct: 1   MANRNLVWNVVKKSFTFGIIGVTISDRYASVVPIRGASMSPTFNPIATSLTGPMTGDYVL 60

Query: 61  VEKFCLDKFQFSPGDVIVYRSPSNYKEKHVKRVIALPGDWVGTRQTYDVVKVPEGHCWVE 120
           VEKFCL+K++FSPGDVIVYRSP NYKEK VKR+IALPGDWVGTRQTYDVVKVPEGHCWVE
Sbjct: 61  VEKFCLEKYKFSPGDVIVYRSPCNYKEKQVKRIIALPGDWVGTRQTYDVVKVPEGHCWVE 120

Query: 121 GDNSDCSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVERIYPQGRVKP 170
           GDN +CSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVE+ YPQG   P
Sbjct: 121 GDNPECSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVEKKYPQGESNP 169

[Close]

BLAST of CmoCh06G002250 vs. ExPASy TrEMBL
Match: A0A1S3B5N7 (Mitochondrial inner membrane protease subunit 2 OS=Cucumis melo OX=3656 GN=LOC103486302 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.4e-83
Identity = 147/169 (86.98%), Postives = 156/169 (92.31%), Query Frame = 0


Query: 1   MANRSLVWNVAKKCFTLGIIGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVL 60
           MANR+LVWNV KK FT GIIGVTISDRYASVVPIRGASMSPTFNP ATSL GP++ DYVL
Sbjct: 1   MANRNLVWNVVKKSFTFGIIGVTISDRYASVVPIRGASMSPTFNPIATSLTGPMTGDYVL 60

Query: 61  VEKFCLDKFQFSPGDVIVYRSPSNYKEKHVKRVIALPGDWVGTRQTYDVVKVPEGHCWVE 120
           VEKFCL+K++FSPGDVIVYRSP NYKEK VKR+IALPGDWVGTRQTYDVVKVPEGHCWVE
Sbjct: 61  VEKFCLEKYKFSPGDVIVYRSPCNYKEKQVKRIIALPGDWVGTRQTYDVVKVPEGHCWVE 120

Query: 121 GDNSDCSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVERIYPQGRVKP 170
           GDN +CSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVE+ YPQG   P
Sbjct: 121 GDNPECSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVEKKYPQGESNP 169

[Close]

BLAST of CmoCh06G002250 vs. TAIR 10
Match: AT3G08980.1 (Peptidase S24/S26A/S26B/S26C family protein )

HSP 1 Score: 209.5 bits (532), Expect = 3.1e-54
Identity = 91/160 (56.88%), Postives = 126/160 (78.75%), Query Frame = 0


Query: 1   MANRSLVWNVAKKCFTLGIIGVTISDRYASVVPIRGASMSPTFNPRATSLAGPVSDDYVL 60
           M  ++++W VAKK FT  IIG+TISDR  SVVP+RG SMSPTFNP+  S      DDYVL
Sbjct: 1   MGIQNILWQVAKKSFTGSIIGLTISDRCCSVVPVRGDSMSPTFNPQRNSYL----DDYVL 60

Query: 61  VEKFCLDKFQFSPGDVIVYRSPSNYKEKHVKRVIALPGDWVGTRQTYDVVKVPEGHCWVE 120
           V+KFCL  ++F+ GDV+V+ SP+++ ++++KR++ +PG+W+ + +  DV++VPEGHCWVE
Sbjct: 61  VDKFCLKDYKFARGDVVVFSSPTHFGDRYIKRIVGMPGEWISSSR--DVIRVPEGHCWVE 120

Query: 121 GDNSDCSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVER 161
           GDN   S+DSRSFGPIP+GLIQGRV+ ++WPPQRI  + R
Sbjct: 121 GDNKTSSLDSRSFGPIPLGLIQGRVTRVMWPPQRISKIGR 154

[Close]

BLAST of CmoCh06G002250 vs. TAIR 10
Match: AT1G53530.1 (Peptidase S24/S26A/S26B/S26C family protein )

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-18
Identity = 52/146 (35.62%), Postives = 74/146 (50.68%), Query Frame = 0


Query: 24  ISDRY-ASVVPIRGASMSPTFNPRATSLAGPVSDDYVLVEKFCLDKFQFSPGDVIVYRSP 83
           ++DRY  S   + G SM PT N         ++ D +L E       +   GDV++ RSP
Sbjct: 35  VTDRYIISTTHVHGPSMLPTLN---------LTGDVILAEHLSHRFGKIGLGDVVLVRSP 94

Query: 84  SNYKEKHVKRVIALPGDWVGTRQTYDV----------VKVPEGHCWVEGDNSDCSMDSRS 143
            + K    KR++ L GD    R T+            V VP+GH W++GDN   S DSR 
Sbjct: 95  RDPKRMVTKRILGLEGD----RLTFSADPLVGDASVSVLVPKGHVWIQGDNLYASTDSRH 154

Query: 144 FGPIPMGLIQGRVSHIVWPPQRIGAV 159
           FGP+P  LI+G+    VWPP+  G++
Sbjct: 155 FGPVPYSLIEGKALLRVWPPEYFGSL 167

[Close]

BLAST of CmoCh06G002250 vs. TAIR 10
Match: AT1G29960.1 (Peptidase S24/S26A/S26B/S26C family protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-17
Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = 0


Query: 36  GASMSPTFNPRATSLAGPVSDDYVLVEKFCLDKFQFSPGDVIVYRSPSNYKEKHVKRVIA 95
           G SM+PT +P         S + +L E+      + S GD++V RSP N  +  +KRVI 
Sbjct: 45  GPSMTPTLHP---------SGNVLLAERISKRYQKPSRGDIVVIRSPENPNKTPIKRVIG 104

Query: 96  LPGDWVG----TRQTYD--VVKVPEGHCWVEGDNSDCSMDSRSFGPIPMGLIQGRVSHIV 155
           + GD +     +R++ +   + VP+GH +V+GD +  S DSR+FG +P GLIQGRV   V
Sbjct: 105 IEGDCISFVIDSRKSDESQTIVVPKGHVFVQGDYTHNSRDSRNFGTVPYGLIQGRVLWRV 162

Query: 156 WPPQRIG 157
           WP Q  G
Sbjct: 165 WPFQDFG 162

[Close]

BLAST of CmoCh06G002250 vs. TAIR 10
Match: AT1G53530.2 (Peptidase S24/S26A/S26B/S26C family protein )

HSP 1 Score: 82.4 bits (202), Expect = 5.6e-16
Identity = 46/130 (35.38%), Postives = 65/130 (50.00%), Query Frame = 0


Query: 39  MSPTFNPRATSLAGPVSDDYVLVEKFCLDKFQFSPGDVIVYRSPSNYKEKHVKRVIALPG 98
           M PT N         ++ D +L E       +   GDV++ RSP + K    KR++ L G
Sbjct: 1   MLPTLN---------LTGDVILAEHLSHRFGKIGLGDVVLVRSPRDPKRMVTKRILGLEG 60

Query: 99  DWVGTRQTYDV----------VKVPEGHCWVEGDNSDCSMDSRSFGPIPMGLIQGRVSHI 158
           D    R T+            V VP+GH W++GDN   S DSR FGP+P  LI+G+    
Sbjct: 61  D----RLTFSADPLVGDASVSVLVPKGHVWIQGDNLYASTDSRHFGPVPYSLIEGKALLR 117

[Close]

BLAST of CmoCh06G002250 vs. TAIR 10
Match: AT1G23465.1 (Peptidase S24/S26A/S26B/S26C family protein )

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-15
Identity = 44/116 (37.93%), Postives = 63/116 (54.31%), Query Frame = 0


Query: 36  GASMSPTFNPRATSLAGPVSDDYVLVEKFCLDKFQFSPGDVIVYRSPSNYKEKHVKRVIA 95
           G SM PT +P         S + +L E+      + S GD++V RSP N  +  +KRV+ 
Sbjct: 45  GPSMIPTLHP---------SGNMLLAERISKRYQKPSRGDIVVIRSPENPNKTPIKRVVG 104

Query: 96  LPGDWVG------TRQTYDVVKVPEGHCWVEGDNSDCSMDSRSFGPIPMGLIQGRV 146
           + GD +              + VP+GH +V+GD +  S DSR+FGP+P GLIQGRV
Sbjct: 105 VEGDCISFVIDPVKSDESQTIVVPKGHVFVQGDYTHNSRDSRNFGPVPYGLIQGRV 151

The following BLAST results are available for this feature:

BLAST of CmoCh06G002250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6AZD4	3.7e-28	40.67	Mitochondrial inner membrane protease subunit 2 OS=Danio rerio OX=7955 GN=immp2l...	[more]
Q2KI92	6.2e-28	43.05	Mitochondrial inner membrane protease subunit 2 OS=Bos taurus OX=9913 GN=IMMP2L ...	[more]
Q96T52	6.2e-28	42.38	Mitochondrial inner membrane protease subunit 2 OS=Homo sapiens OX=9606 GN=IMMP2...	[more]
Q8BPT6	1.4e-27	42.57	Mitochondrial inner membrane protease subunit 2 OS=Mus musculus OX=10090 GN=Immp...	[more]
Q5PQ63	2.5e-24	39.33	Mitochondrial inner membrane protease subunit 2 OS=Xenopus laevis OX=8355 GN=imm...	[more]

BLAST of CmoCh06G002250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GA60	4.7e-95	100.00	Mitochondrial inner membrane protease subunit 2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I8V8	1.7e-92	97.02	Mitochondrial inner membrane protease subunit 2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CW41	1.4e-86	89.29	Mitochondrial inner membrane protease subunit 2 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0LFB4	1.4e-83	86.98	Mitochondrial inner membrane protease subunit 2 OS=Cucumis sativus OX=3659 GN=Cs...	[more]
A0A1S3B5N7	1.4e-83	86.98	Mitochondrial inner membrane protease subunit 2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CmoCh06G002250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08980.1	3.1e-54	56.88	Peptidase S24/S26A/S26B/S26C family protein	[more]
AT1G53530.1	1.2e-18	35.62	Peptidase S24/S26A/S26B/S26C family protein	[more]
AT1G29960.1	1.7e-17	39.37	Peptidase S24/S26A/S26B/S26C family protein	[more]
AT1G53530.2	5.6e-16	35.38	Peptidase S24/S26A/S26B/S26C family protein	[more]
AT1G23465.1	2.8e-15	37.93	Peptidase S24/S26A/S26B/S26C family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000223	Peptidase S26A, signal peptidase I	PRINTS	PR00727	LEADERPTASE	coord: 112..131 score: 53.81 coord: 27..43 score: 29.83 coord: 89..101 score: 56.78
None	No IPR available	GENE3D	2.10.109.10	Umud Fragment, subunit A	coord: 26..163 e-value: 8.6E-30 score: 105.3
IPR019533	Peptidase S26	PFAM	PF10502	Peptidase_S26	coord: 9..104 e-value: 6.2E-13 score: 49.0 coord: 110..150 e-value: 7.1E-9 score: 35.8
IPR019533	Peptidase S26	CDD	cd06530	S26_SPase_I	coord: 30..145 e-value: 1.88234E-23 score: 88.7967
IPR037730	Mitochondrial inner membrane protease subunit 2	PANTHER	PTHR46041	MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2	coord: 2..168
IPR036286	LexA/Signal peptidase-like superfamily	SUPERFAMILY	51306	LexA/Signal peptidase	coord: 30..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G002250.1	CmoCh06G002250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033108	mitochondrial respiratory chain complex assembly
biological_process	GO:0006627	protein processing involved in protein targeting to mitochondrion
biological_process	GO:0006465	signal peptide processing
biological_process	GO:0006508	proteolysis
cellular_component	GO:0042720	mitochondrial inner membrane peptidase complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0008236	serine-type peptidase activity