CmoCh06G001730 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G001730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	KH domain-containing protein
Location	Cmo_Chr06: 942173 .. 947077 (+)
RNA-Seq Expression	CmoCh06G001730
Synteny	CmoCh06G001730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTAAAAAATAAAAAATAAAAAAAATCCCTTCCTTTCTGCAAATTCTCACTCACTGCAGACCCCAGAGCTGAGCTGAGCTCCCCTTTATTGGTGCCTCTGTCTTCCCTTTTTCTTCCGCATCAAGAACTCCTCAAATCTCTTTCTTCATTTCTTCAGATTCCGAATAATTCAATCAAGCTTGCATCAAAAAGCAAGCTCCCAGTAATGTCAGGTTTGTATAATCCCAACTTCTCCCCTGCAAGAGCAGCTTCTCCTCAGATTCGGACCTCCGCCGATGCTGACAGGTACCTTATCTATCTCAATTTCAAGCATATGCTATCACTTCATCTTCTTCCTCGTCTTCTGATCTCTCTCCGCCTTTTTCTCCCTCAGTCAGTACTTGTCGGAGCTGTTGGCTGAGCATCAGAAACTCGGTCCCTTCATGCAAATCCTTCCTATTTGTAAACGCCTTTTGAATCAAGGTGAGTTTTCTGTGATTTTCTCTTCGCTGCCACTGTTCTTGCCTATCTACTTAGATCGCCTTCATCATCCAATCTTCACCGCCCCTTTTGATTTCGTAATCTATAAGATTGAGATTCTTGCCATTTGTATATCTAATCTGAGATTTCTATTTTATAATCTATATGAATGAGATGCTTCTTGTGTTGATGGAATTTAGAGATTCTGAAGGTTGTTCTGGAGTACTCTGAATCGGCAGCTCCATCAATTTTGTTGTACTTGTTGTTCTTGCTATTGACTGTAAATGTTGAACTACTCTTCAGTGATTACTCTACTTTAGTGTTAGCTGTTCTTGGAGTAGCTTTTGCAATACATACTTTAACAGCTTTAAAAATTCATGTTGTTACATTTACATATAAGTTGTTAGTGGTCATGAACTCACTCTAGTGACAAACTTGCAAGTTTTCAGGCAAAATCTCTTTCCTAAAGCATTTATGCAAGTGAGTTTAATTGACACTAATTCACTTTTCATGATCTTGAGCAGCAAAAAAAAAAAAAAGTTAGTACAAGGTCGAGACATTAAATTGAACCAAAATCTAGATCAGTTGGAGTATTAGCAGAGAATATTATAAGTGGTGTGTTTGTTATTATTTGAGAAGTTTGTTTGAGTTGATTGCTATATATAGAGTGACTTGAGCATTTGTAGGCAGAATTTTGGGTATTAGTTTTGCAGGAGAATGATAGCCCTTTTAAATGCTATAAACCAATGTAATTTCGTGCTTACTATCTTATTTCCAATCTCAAGACAGATTGAGTATCTATCCGTCTCCTTCCATCCCAAGAAATATCCTATTCCTTTTTGATAAAATATTCACCAAGAAACTAGCTTGCCACAAAACAGCTTCGTTATAAAGCTTGTCACGCCCTTATAAAGAGTGCTTCGTTTCTCTCTCCAACTAATGTCCGATCTGCGAGAAAGATGCTGGCCCCGAAGGGGAGTGAATTATGAGATCCCACATCGATGGGAGAGATGAACGAGTGCTACCGAGGACCCTCAGCACCGGAGGGGAGTGGATTGTGGATCGGTTGGAGAGGGGAACGAAACATTCTTTACAAGAGTATGGAAATCTCTCACTAAGCGTTTTCAAAAAATCCTAATCACATGTCAATTAATTCATTTAAAAAAACCATCCTAATAGTCCATTGCATTTCAAAAAAACCAATAAGAATCAACGCCTATCAATTAATTCATCCACAATCACATGTAACACAATCAGTTTATACAAAATTTTCACCAAGGAATAAGAAATTTCAAGACGTGCATTAAGATCTGGAGAAATATTAATGGAATATTCACCCCCTATTACCCATGATAAGTAAAAGGCAGAAATATTAATGAAATATGAGACATGTTTTGCTGGCCAATGCTTCAGACCTCTGAAGCATTCAACTATCTTAAATAAGAACCTAAATAATTATTGAGAAGCCTACCTAGACAGTAATAAAAATCAAATTCTTGCTCAATTGATGAAGAACTAACCTGGTATCTATATTTGACTCTGCTAATCCATGTCGTACTTTTTGCACGTTCTAAACTTCAGAACTGTGGATCTTTTTTTTTTTTTTTCATATGATAAGTTTCTTTATGTGTAGAAATTTTGCAGGTTTCTGGAATGATGTTCAAGCAAAGGTTATTGTGATTTTTTTATGACAAGTTACTTTATGTGCAGAGATTTTGCGAGTTTCTGGAATGATGTCCAACCAGGGTTTTAGTGACTTCGACAGATTACGACATAGAAGCCCTAGTCCAATGGCTTCTTCAAACCTCATGTCAAACATTTCTGGCACAGGTTTTGGCAGCTGGAATGGACTCCCTCAGGAGGTAAGTTTGTTCAGACCAATAGTGAGTTCGTAAGATTCATTTGAACAGATCACTCATTGGAATTCTGGTGGTGCATGTTTGGTTGAAACTTATCCAACTTAAAAGCTACCAACCGCCATGTAATGCTCAAATTGGCTTTTGACATTTTGAAGTTCTAACAAAATTTTGATTCCTAATTTATTAGATGGTTGCCTAAGAAAACTCATGTTCTGTGAACTTTCTACAATTATATGATTTTTGTTTTTTTTTAATTGTCACTCTATTTCGCCAAGTTGTACGCTGAAGTGGCTGTTACTGCTAGATAAAGTAGGAATGAACTTGTATGTGAATTGGTCGAGTTTACTTCTATGTCTTCTCGACTAGTCCTCTCGAGGCTGTATACTGAGAAACTCTGGAGCTAATTTGACTGTTTACTATGCAGGGTAGTTCTCTATGATCAAGTTGCTTAAATAAAAGTGTAATAGTCATCATGAAACCATGCATATATGGTAGATAGTTTTCATTTAGGGTCACTTTTGATAATCGTTTGGTTTTTTAAAATTAAGCCTATAAATACTTCCCACCAATGTTTTCTTGTTTTGTTATCTACTTTTTATCCATGTTTTAAAAGACCAAAAGTTTTGAAAATTAAAAAAGATTAGTTTTTAAAAACTAGTTTTTGTTTTTGAAATTTGGAAAGAATTCAAATGTATTCTTAAAAAAGATAAAATTCATTGTAGAAAATTGATGAGAAAACGAGCACAATTTTCTAAAACCAAAGATCAAATGGTTATCAAACGAGACATTTATTTTTTAAGTTAAAGCCCCCAAGTTATCGTTGCTCGTGCAACTTGAAAGAATGTATACCAGCACAATGAACTAATCAATAGTATTACTGCAAACTGCAACAGGCTTCAAAGTGATGTGGAATGGAGGAACTTACATCTTTTTTAGTTCTTGTCATTTATATGCTGTATGCTAATCATCTATCTCTCATGCAAGTAAGAAACAATTGTTTGTTCTTAATATGGGATTGTTTTCCTGGGTTCTTGGGAAGGTAGTAGAAACTTCCATCTTGTCTTCTACATTTATCTTGACTTGCAGGCTTTCTAGAATTTTTCCTAGTGTTATATAAGATGCATACAACCCAAATTTGTGAAATTATTAGGCCTTGTACACTAGCTTTTTTTGTAAAATCAACTTTGACCACCAATACCACTTGTTTTTTCTTTTCACAGCCCAGATTAAGTGGAAATCCTGGAACGACAATGGACTGGCAAGGTGCTCCTGCAAGCCCGAGTTCATTTACTGTAAAGAAAATTTTGCGGTTGGAAATACCAGTGGAGACGTATCCGAATGTAATTTCTATATAAAGAAGTATTATTGTACGTTTTTTTTTCTAATCTTATCATTAGATCTGGATTTATAAAACTTTTGGTTGTTTTGTTTCTTGGACGTCAGTTCAATTTTGTTGGGCGGCTTCTCGGACCTAGAGGCAATTCTCTAAAAAGGGTAGAAGCTACTACCGGGTGTCGTGTGTATATAAGAGGAAAGGGGTCAATTAAAGATCCAGAAAAGGTATTTTAGGTGAAATTGCTCTTTAAGTGAAGCTTTTACCAATGGATGTTTCTTATTGTGTTTGATGGTAGTATCTACTAATGTTTAATATTGAGTTCTCTGGTTATTTATTTCTTTATCTATGACTGTTTTAAACTCTGAAGGAAGAGAAACTCCGAGGGAGACTTGGCTATGAACATCTGAACGAACCGCTGCATGTCCTCATCGAGGCTGACTTACCAGCCAATATCATCGATATCAGGTTGAGACAGGCACAAGAAATTATAGAAGAACTACTCAAACCTGTGGTACTGTTTACTTTCCAACCTAGTTCTTATCAAGTTTAATTTGAGTTTATGATAGAGATGGGTCCAATAGATGAATTATTTGTCATTGCATGTGTTTTTGTTCATGAGATGCTATTAAACATGTCCTTGGGGTGATCATGGTTGACATCTGCAGTCCAAGAAGAACAGAAAAGAAAGAAATGATTCTTGCAATCCATGTGTTTAGGAGTAGTGGTTTTTTACATACAAATCTAAATGGTCGTCCGTTGTGTTTACAGGACGAGCCGAATGATTATATCAAAAGACAACAACTGCGCGAATTAGCAATGCTGAATTCAAATTTCAGAGAGGAAAGTCCTGGTCCGAGTGGTGGTAGTGTTTCACCTTTCAACTCGAGTGGGATGAAGCGAGCTAAAACCGGTGGCTGAGAGCTCGCATTACTGGCCGAGACGTTTTTCCTCTCTATTATGCAAATCGATCACTGAAATGCCTGCCAACAGGTTAGGATTCAGTAACTAGCATAACTACAAAAATTGATGGTCAATATTCATTTTTGAGTTTATTTATTATTTATTTATAAACAACAGAATGTTAAGAAATGTCTTTTTTGTTTCCTCATTTTCTACTGAGAGAGAAAAGAGAAGGGCTTAGTGAGTGAAGATTATGTAGTTTTGCTTGGGAGAGGTTCCCATCTGGTGAGGTCGTTCTGTCTTATAAACTGAATATAATTATTGAATTTATTCTTGTGTTAGTGACTTC

mRNA sequence

TATTTAAAAAATAAAAAATAAAAAAAATCCCTTCCTTTCTGCAAATTCTCACTCACTGCAGACCCCAGAGCTGAGCTGAGCTCCCCTTTATTGGTGCCTCTGTCTTCCCTTTTTCTTCCGCATCAAGAACTCCTCAAATCTCTTTCTTCATTTCTTCAGATTCCGAATAATTCAATCAAGCTTGCATCAAAAAGCAAGCTCCCAGTAATGTCAGGTTTGTATAATCCCAACTTCTCCCCTGCAAGAGCAGCTTCTCCTCAGATTCGGACCTCCGCCGATGCTGACAGTCAGTACTTGTCGGAGCTGTTGGCTGAGCATCAGAAACTCGGTCCCTTCATGCAAATCCTTCCTATTTGTAAACGCCTTTTGAATCAAGAGATTTTGCGAGTTTCTGGAATGATGTCCAACCAGGGTTTTAGTGACTTCGACAGATTACGACATAGAAGCCCTAGTCCAATGGCTTCTTCAAACCTCATGTCAAACATTTCTGGCACAGGTTTTGGCAGCTGGAATGGACTCCCTCAGGAGCCCAGATTAAGTGGAAATCCTGGAACGACAATGGACTGGCAAGGTGCTCCTGCAAGCCCGAGTTCATTTACTGTAAAGAAAATTTTGCGGTTGGAAATACCAGTGGAGACGTATCCGAATTTCAATTTTGTTGGGCGGCTTCTCGGACCTAGAGGCAATTCTCTAAAAAGGGTAGAAGCTACTACCGGGTGTCGTGTGTATATAAGAGGAAAGGGGTCAATTAAAGATCCAGAAAAGGAAGAGAAACTCCGAGGGAGACTTGGCTATGAACATCTGAACGAACCGCTGCATGTCCTCATCGAGGCTGACTTACCAGCCAATATCATCGATATCAGGTTGAGACAGGCACAAGAAATTATAGAAGAACTACTCAAACCTGTGGACGAGCCGAATGATTATATCAAAAGACAACAACTGCGCGAATTAGCAATGCTGAATTCAAATTTCAGAGAGGAAAGTCCTGGTCCGAGTGGTGGTAGTGTTTCACCTTTCAACTCGAGTGGGATGAAGCGAGCTAAAACCGGTGGCTGAGAGCTCGCATTACTGGCCGAGACGTTTTTCCTCTCTATTATGCAAATCGATCACTGAAATGCCTGCCAACAGGTTAGGATTCAGTAACTAGCATAACTACAAAAATTGATGGTCAATATTCATTTTTGAGTTTATTTATTATTTATTTATAAACAACAGAATGTTAAGAAATGTCTTTTTTGTTTCCTCATTTTCTACTGAGAGAGAAAAGAGAAGGGCTTAGTGAGTGAAGATTATGTAGTTTTGCTTGGGAGAGGTTCCCATCTGGTGAGGTCGTTCTGTCTTATAAACTGAATATAATTATTGAATTTATTCTTGTGTTAGTGACTTC

Coding sequence (CDS)

ATGTCAGGTTTGTATAATCCCAACTTCTCCCCTGCAAGAGCAGCTTCTCCTCAGATTCGGACCTCCGCCGATGCTGACAGTCAGTACTTGTCGGAGCTGTTGGCTGAGCATCAGAAACTCGGTCCCTTCATGCAAATCCTTCCTATTTGTAAACGCCTTTTGAATCAAGAGATTTTGCGAGTTTCTGGAATGATGTCCAACCAGGGTTTTAGTGACTTCGACAGATTACGACATAGAAGCCCTAGTCCAATGGCTTCTTCAAACCTCATGTCAAACATTTCTGGCACAGGTTTTGGCAGCTGGAATGGACTCCCTCAGGAGCCCAGATTAAGTGGAAATCCTGGAACGACAATGGACTGGCAAGGTGCTCCTGCAAGCCCGAGTTCATTTACTGTAAAGAAAATTTTGCGGTTGGAAATACCAGTGGAGACGTATCCGAATTTCAATTTTGTTGGGCGGCTTCTCGGACCTAGAGGCAATTCTCTAAAAAGGGTAGAAGCTACTACCGGGTGTCGTGTGTATATAAGAGGAAAGGGGTCAATTAAAGATCCAGAAAAGGAAGAGAAACTCCGAGGGAGACTTGGCTATGAACATCTGAACGAACCGCTGCATGTCCTCATCGAGGCTGACTTACCAGCCAATATCATCGATATCAGGTTGAGACAGGCACAAGAAATTATAGAAGAACTACTCAAACCTGTGGACGAGCCGAATGATTATATCAAAAGACAACAACTGCGCGAATTAGCAATGCTGAATTCAAATTTCAGAGAGGAAAGTCCTGGTCCGAGTGGTGGTAGTGTTTCACCTTTCAACTCGAGTGGGATGAAGCGAGCTAAAACCGGTGGCTGA

Protein sequence

MSGLYNPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILRVSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDWQGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDYIKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTGG

Homology

[Close]

BLAST of CmoCh06G001730 vs. ExPASy Swiss-Prot
Match: Q9ZVI3 (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana OX=3702 GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 6.0e-128
Identity = 240/287 (83.62%), Postives = 259/287 (90.24%), Query Frame = 0


Query: 1   MSGLYNPN--FSPARAASPQIRTSADAD-SQYLSELLAEHQKLGPFMQILPICKRLLNQE 60
           MSGLYN +  FSPARAASPQIR++ + D SQYL+ELLAEHQKL PFMQ+LPIC RLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTT 120
           + RVSGMMSNQGF DFDRLRHRSPSPMASSNLMSN+S TG G WNGL QE RLSG PG T
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSGTPGMT 120

Query: 121 MDWQGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 180
           MDWQGAP SPSS+TVK+ILRLEIPV+ YPNFNFVGRLLGPRGNSLKRVEATTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 KGSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEP 240
           KGSIKDPEKE+KLRGR GYEHLNE LH+LIEADLPA+I++IRLRQAQEIIEELLKPVDE 
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 NDYIKRQQLRELAMLNS-NFREESPGPS-GGSVSPFNSSGMKRAKTG 283
            D+IKRQQLRELA+LNS N REESPGPS GGSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of CmoCh06G001730 vs. ExPASy Swiss-Prot
Match: Q8GYR4 (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana OX=3702 GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 2.3e-127
Identity = 230/284 (80.99%), Postives = 255/284 (89.79%), Query Frame = 0


Query: 1   MSGLYN-PNFSPARAASPQIRT-SADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEI 60
           MSGLYN  NFSP+RAASPQIRT S+D DSQY+S+LLAEHQKLGPFMQ+LPIC RLLNQEI
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEI 60

Query: 61  LRVSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTM 120
            R++GMM NQGF+DFDRLRHRSPSPMAS NLMSN+SG G G WNGLP E R+ G  G  M
Sbjct: 61  FRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPE-RIGGPHGMAM 120

Query: 121 DWQGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180
           +WQGAPASPSS+ VK+ILRL++PV+TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 121 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 GSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240
           GSIKDPEKEEKL+G+ GYEHLNE LH+LIEADLP +I+DI+LRQAQEIIEEL+KPVDE  
Sbjct: 181 GSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQ 240

Query: 241 DYIKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTG 283
           DYIKRQQLRELA+LNSN RE SPGPS GSVSPFNS+ MKR KTG
Sbjct: 241 DYIKRQQLRELALLNSNLRENSPGPS-GSVSPFNSNAMKRPKTG 282

[Close]

BLAST of CmoCh06G001730 vs. ExPASy Swiss-Prot
Match: Q75GR5 (KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica OX=39947 GN=SPIN1 PE=1 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 2.9e-114
Identity = 209/283 (73.85%), Postives = 240/283 (84.81%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRTS-ADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEIL 60
           MSGLY+P FSPAR  SPQIR++  D DSQYL+ELLAEHQKLGPFMQ+LPIC +LL+QEI+
Sbjct: 1   MSGLYSPGFSPARNLSPQIRSNPTDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEIM 60

Query: 61  RVSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMD 120
           RVS ++ N GF DFDR R RSPSPM+S N  SN SG GF  WNGL QE RL    GT+MD
Sbjct: 61  RVSSIVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNGFSPWNGLHQE-RLGFPQGTSMD 120

Query: 121 WQGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKG 180
           WQGAP SPSS  VKKILRL++PV++YPNFNFVGR+LGPRGNSLKRVEA+TGCRV+IRGKG
Sbjct: 121 WQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKG 180

Query: 181 SIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPND 240
           SIKDP KE+KLRG+ GYEHL++PLH+LIEA+ PA+IID RLR AQE+IEELLKPVDE  D
Sbjct: 181 SIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVDESQD 240

Query: 241 YIKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTG 283
           + KRQQLRELAMLNS  RE+SP P  GSVSPF++ GMKRAKTG
Sbjct: 241 FYKRQQLRELAMLNSTLREDSPHP--GSVSPFSNGGMKRAKTG 280

[Close]

BLAST of CmoCh06G001730 vs. ExPASy Swiss-Prot
Match: Q0WLR1 (KH domain-containing protein At4g26480 OS=Arabidopsis thaliana OX=3702 GN=At4g26480 PE=2 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 5.5e-73
Identity = 147/278 (52.88%), Postives = 192/278 (69.06%), Query Frame = 0


Query: 6   NPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILRVSGMM 65
           +PNFS    + P      +   +YLSELLAE  KL PF+ +LP   RL+NQEILRV+ ++
Sbjct: 41  SPNFSGGLRSQPSFLVEQE---KYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLL 100

Query: 66  SNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDWQGAPA 125
            N       + R   PSP+AS  +  N      G  +  P E  +S +P    +W  +P 
Sbjct: 101 ENA----LSQSRFDHPSPLASGGIFQNSRADMNGWASQFPSERSVSSSPAP--NWLNSPG 160

Query: 126 SPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPE 185
           S S   VK+ +R++IPV+ YPN+NFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP 
Sbjct: 161 SSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPI 220

Query: 186 KEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDYIKRQQ 245
           KE+ +RG+ GYEHLNEPLH+L+EA+LP  I+D RL QA+EI+++LL PV+E +D+ K+QQ
Sbjct: 221 KEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQ 280

Query: 246 LRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTGG 284
           LRELA+LN + REE   P  GS+SP+NS GMKRAKT G
Sbjct: 281 LRELALLNGSLREEG-SPMSGSISPYNSLGMKRAKTRG 308

[Close]

BLAST of CmoCh06G001730 vs. ExPASy Swiss-Prot
Match: Q9FKT4 (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana OX=3702 GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.7e-72
Identity = 147/276 (53.26%), Postives = 188/276 (68.12%), Query Frame = 0


Query: 6   NPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILRVSGMM 65
           +PN+S    +   +    +   +YLSELLAE  KL PF+ +LP   RLLNQEILRV+ ++
Sbjct: 45  SPNYSGGLRSQSSVFVEQE---KYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLL 104

Query: 66  SNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDWQGAPA 125
            N        L H  PSP+AS  +  N      G  +  P E  +  +PG   +W  +P 
Sbjct: 105 ENATVLSQSGLDH--PSPLASGGIFQNARADMNGWASQFPSERSVPSSPGP--NWLNSPG 164

Query: 126 SPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPE 185
           S S    K+ +R++IPV+ YPNFNFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP 
Sbjct: 165 SSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPI 224

Query: 186 KEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDYIKRQQ 245
           KEE +RG+ GYEHLNEPLH+L+EA+LP  I+D RL QA+EI+++LL P++E +D  K+QQ
Sbjct: 225 KEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQ 284

Query: 246 LRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKT 282
           LRELA+LN   REE   P  GSVSP+NS GMKRAKT
Sbjct: 285 LRELALLNGTLREEG-SPMSGSVSPYNSLGMKRAKT 312

[Close]

BLAST of CmoCh06G001730 vs. ExPASy TrEMBL
Match: A0A6J1I3I7 (KH domain-containing protein At2g38610-like OS=Cucurbita maxima OX=3661 GN=LOC111470213 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 4.9e-157
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILR 60
           MSGLYNPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILR 60

Query: 61  VSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDW 120
           VSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDW
Sbjct: 61  VSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDW 120

Query: 121 QGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180
           QGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY 240
           IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY
Sbjct: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY 240

Query: 241 IKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTGG 284
           IKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTGG
Sbjct: 241 IKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTGG 283

[Close]

BLAST of CmoCh06G001730 vs. ExPASy TrEMBL
Match: A0A6J1FU50 (KH domain-containing protein At2g38610 OS=Cucurbita moschata OX=3662 GN=LOC111446905 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 4.9e-157
Identity = 283/283 (100.00%), Postives = 283/283 (100.00%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILR 60
           MSGLYNPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILR 60

Query: 61  VSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDW 120
           VSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDW
Sbjct: 61  VSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDW 120

Query: 121 QGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180
           QGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY 240
           IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY
Sbjct: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY 240

Query: 241 IKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTGG 284
           IKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTGG
Sbjct: 241 IKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTGG 283

[Close]

BLAST of CmoCh06G001730 vs. ExPASy TrEMBL
Match: A0A6J1DU72 (KH domain-containing protein At3g08620-like OS=Momordica charantia OX=3673 GN=LOC111024049 PE=4 SV=1)

HSP 1 Score: 538.9 bits (1387), Expect = 1.3e-149
Identity = 272/282 (96.45%), Postives = 277/282 (98.23%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILR 60
           MSGLYNPNFSPARAASPQIR+SADADSQYLSELLAEHQKLGPFMQILPIC RLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSADADSQYLSELLAEHQKLGPFMQILPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDW 120
           VSGMMSNQGFSDF+RLRHRSPSPMASSNL+SNISGTGFG WNGLPQEPRLSG+ G TMDW
Sbjct: 61  VSGMMSNQGFSDFERLRHRSPSPMASSNLVSNISGTGFGGWNGLPQEPRLSGSSGMTMDW 120

Query: 121 QGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180
           QGAPASPSSFTVK+ILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSFTVKRILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY 240
           IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY
Sbjct: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY 240

Query: 241 IKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTG 283
           IKRQQLRELAMLNSNFREESPGPS GSVSPFNSSGMKRAKTG
Sbjct: 241 IKRQQLRELAMLNSNFREESPGPS-GSVSPFNSSGMKRAKTG 281

[Close]

BLAST of CmoCh06G001730 vs. ExPASy TrEMBL
Match: A0A6J1IZS3 (KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481428 PE=4 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 3.4e-142
Identity = 257/282 (91.13%), Postives = 267/282 (94.68%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILR 60
           MSGLYNPNFSPARAASPQIR+SADADS YLSELLAEH KLGPFMQILPIC RLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRSSADADSHYLSELLAEHHKLGPFMQILPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDW 120
           +SGMMSNQGFSD +RLR RSPSPM SSNL+SN+SG GFG WNGLPQE  LSGNPG TMDW
Sbjct: 61  ISGMMSNQGFSDLERLRQRSPSPMPSSNLVSNVSGAGFGGWNGLPQEQMLSGNPGMTMDW 120

Query: 121 QGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180
           QGAPASPSSFTVK+IL+LEIPV+TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSFTVKRILQLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY 240
           IKDP+KEEKL GRLGYEHLNEPLHVLIEADLP NI+DIRLRQAQEIIEELLKPVDEPNDY
Sbjct: 181 IKDPDKEEKLHGRLGYEHLNEPLHVLIEADLPPNIVDIRLRQAQEIIEELLKPVDEPNDY 240

Query: 241 IKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTG 283
           IKRQQLRELAMLNSN REESPGPS GSVSPFNSSGMKRAKTG
Sbjct: 241 IKRQQLRELAMLNSNLREESPGPS-GSVSPFNSSGMKRAKTG 281

[Close]

BLAST of CmoCh06G001730 vs. ExPASy TrEMBL
Match: A0A2P5B9Y0 (Polyribonucleotide nucleotidyltransferase OS=Trema orientale OX=63057 GN=TorRG33x02_328370 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 2.9e-141
Identity = 256/282 (90.78%), Postives = 269/282 (95.39%), Query Frame = 0


Query: 1   MSGLYNPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILR 60
           MSGLYNPNFSPARAASPQIR++ D DSQYLSELLAEHQKLGPFMQ+LPIC RLLNQEILR
Sbjct: 1   MSGLYNPNFSPARAASPQIRSTPDVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEILR 60

Query: 61  VSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDW 120
           VSGMMSNQGF DFDRLRHRSPSPMASSNLMSN++G+G G WNGLPQE RLSG PG TMDW
Sbjct: 61  VSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVTGSGLGGWNGLPQE-RLSGPPGMTMDW 120

Query: 121 QGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180
           QGAPASPSS+TVK+ILRLEIPV+TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS
Sbjct: 121 QGAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 180

Query: 181 IKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDY 240
           IKDP+KEEKLRGR GYEHLNEPLH+LIEADLPANI+DIRLRQAQEIIEELLKPVDE  DY
Sbjct: 181 IKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDY 240

Query: 241 IKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTG 283
           IKRQQLRELAMLNSNFREESPGPS GSVSPFN+SGMKRAKTG
Sbjct: 241 IKRQQLRELAMLNSNFREESPGPS-GSVSPFNTSGMKRAKTG 280

[Close]

BLAST of CmoCh06G001730 vs. TAIR 10
Match: AT2G38610.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 458.4 bits (1178), Expect = 4.3e-129
Identity = 240/287 (83.62%), Postives = 259/287 (90.24%), Query Frame = 0


Query: 1   MSGLYNPN--FSPARAASPQIRTSADAD-SQYLSELLAEHQKLGPFMQILPICKRLLNQE 60
           MSGLYN +  FSPARAASPQIR++ + D SQYL+ELLAEHQKL PFMQ+LPIC RLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTT 120
           + RVSGMMSNQGF DFDRLRHRSPSPMASSNLMSN+S TG G WNGL QE RLSG PG T
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSGTPGMT 120

Query: 121 MDWQGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 180
           MDWQGAP SPSS+TVK+ILRLEIPV+ YPNFNFVGRLLGPRGNSLKRVEATTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 KGSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEP 240
           KGSIKDPEKE+KLRGR GYEHLNE LH+LIEADLPA+I++IRLRQAQEIIEELLKPVDE 
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 NDYIKRQQLRELAMLNS-NFREESPGPS-GGSVSPFNSSGMKRAKTG 283
            D+IKRQQLRELA+LNS N REESPGPS GGSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of CmoCh06G001730 vs. TAIR 10
Match: AT2G38610.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 458.4 bits (1178), Expect = 4.3e-129
Identity = 240/287 (83.62%), Postives = 259/287 (90.24%), Query Frame = 0


Query: 1   MSGLYNPN--FSPARAASPQIRTSADAD-SQYLSELLAEHQKLGPFMQILPICKRLLNQE 60
           MSGLYN +  FSPARAASPQIR++ + D SQYL+ELLAEHQKL PFMQ+LPIC RLLNQE
Sbjct: 1   MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60

Query: 61  ILRVSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTT 120
           + RVSGMMSNQGF DFDRLRHRSPSPMASSNLMSN+S TG G WNGL QE RLSG PG T
Sbjct: 61  MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSGTPGMT 120

Query: 121 MDWQGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 180
           MDWQGAP SPSS+TVK+ILRLEIPV+ YPNFNFVGRLLGPRGNSLKRVEATTGCRV+IRG
Sbjct: 121 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 180

Query: 181 KGSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEP 240
           KGSIKDPEKE+KLRGR GYEHLNE LH+LIEADLPA+I++IRLRQAQEIIEELLKPVDE 
Sbjct: 181 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 240

Query: 241 NDYIKRQQLRELAMLNS-NFREESPGPS-GGSVSPFNSSGMKRAKTG 283
            D+IKRQQLRELA+LNS N REESPGPS GGSVSPFNSSG KR KTG
Sbjct: 241 QDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285

[Close]

BLAST of CmoCh06G001730 vs. TAIR 10
Match: AT3G08620.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 456.4 bits (1173), Expect = 1.6e-128
Identity = 230/284 (80.99%), Postives = 255/284 (89.79%), Query Frame = 0


Query: 1   MSGLYN-PNFSPARAASPQIRT-SADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEI 60
           MSGLYN  NFSP+RAASPQIRT S+D DSQY+S+LLAEHQKLGPFMQ+LPIC RLLNQEI
Sbjct: 1   MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEI 60

Query: 61  LRVSGMMSNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTM 120
            R++GMM NQGF+DFDRLRHRSPSPMAS NLMSN+SG G G WNGLP E R+ G  G  M
Sbjct: 61  FRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPE-RIGGPHGMAM 120

Query: 121 DWQGAPASPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180
           +WQGAPASPSS+ VK+ILRL++PV+TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 121 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 180

Query: 181 GSIKDPEKEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPN 240
           GSIKDPEKEEKL+G+ GYEHLNE LH+LIEADLP +I+DI+LRQAQEIIEEL+KPVDE  
Sbjct: 181 GSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQ 240

Query: 241 DYIKRQQLRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTG 283
           DYIKRQQLRELA+LNSN RE SPGPS GSVSPFNS+ MKR KTG
Sbjct: 241 DYIKRQQLRELALLNSNLRENSPGPS-GSVSPFNSNAMKRPKTG 282

[Close]

BLAST of CmoCh06G001730 vs. TAIR 10
Match: AT4G26480.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 275.8 bits (704), Expect = 3.9e-74
Identity = 147/278 (52.88%), Postives = 192/278 (69.06%), Query Frame = 0


Query: 6   NPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILRVSGMM 65
           +PNFS    + P      +   +YLSELLAE  KL PF+ +LP   RL+NQEILRV+ ++
Sbjct: 41  SPNFSGGLRSQPSFLVEQE---KYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLL 100

Query: 66  SNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDWQGAPA 125
            N       + R   PSP+AS  +  N      G  +  P E  +S +P    +W  +P 
Sbjct: 101 ENA----LSQSRFDHPSPLASGGIFQNSRADMNGWASQFPSERSVSSSPAP--NWLNSPG 160

Query: 126 SPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPE 185
           S S   VK+ +R++IPV+ YPN+NFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP 
Sbjct: 161 SSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPI 220

Query: 186 KEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDYIKRQQ 245
           KE+ +RG+ GYEHLNEPLH+L+EA+LP  I+D RL QA+EI+++LL PV+E +D+ K+QQ
Sbjct: 221 KEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQ 280

Query: 246 LRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKTGG 284
           LRELA+LN + REE   P  GS+SP+NS GMKRAKT G
Sbjct: 281 LRELALLNGSLREEG-SPMSGSISPYNSLGMKRAKTRG 308

[Close]

BLAST of CmoCh06G001730 vs. TAIR 10
Match: AT5G56140.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 273.5 bits (698), Expect = 1.9e-73
Identity = 147/276 (53.26%), Postives = 188/276 (68.12%), Query Frame = 0


Query: 6   NPNFSPARAASPQIRTSADADSQYLSELLAEHQKLGPFMQILPICKRLLNQEILRVSGMM 65
           +PN+S    +   +    +   +YLSELLAE  KL PF+ +LP   RLLNQEILRV+ ++
Sbjct: 45  SPNYSGGLRSQSSVFVEQE---KYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLL 104

Query: 66  SNQGFSDFDRLRHRSPSPMASSNLMSNISGTGFGSWNGLPQEPRLSGNPGTTMDWQGAPA 125
            N        L H  PSP+AS  +  N      G  +  P E  +  +PG   +W  +P 
Sbjct: 105 ENATVLSQSGLDH--PSPLASGGIFQNARADMNGWASQFPSERSVPSSPGP--NWLNSPG 164

Query: 126 SPSSFTVKKILRLEIPVETYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPE 185
           S S    K+ +R++IPV+ YPNFNFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP 
Sbjct: 165 SSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPI 224

Query: 186 KEEKLRGRLGYEHLNEPLHVLIEADLPANIIDIRLRQAQEIIEELLKPVDEPNDYIKRQQ 245
           KEE +RG+ GYEHLNEPLH+L+EA+LP  I+D RL QA+EI+++LL P++E +D  K+QQ
Sbjct: 225 KEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQ 284

Query: 246 LRELAMLNSNFREESPGPSGGSVSPFNSSGMKRAKT 282
           LRELA+LN   REE   P  GSVSP+NS GMKRAKT
Sbjct: 285 LRELALLNGTLREEG-SPMSGSVSPYNSLGMKRAKT 312

The following BLAST results are available for this feature:

BLAST of CmoCh06G001730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVI3	6.0e-128	83.62	KH domain-containing protein At2g38610 OS=Arabidopsis thaliana OX=3702 GN=At2g38...	[more]
Q8GYR4	2.3e-127	80.99	KH domain-containing protein At3g08620 OS=Arabidopsis thaliana OX=3702 GN=At3g08...	[more]
Q75GR5	2.9e-114	73.85	KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica OX=39947 GN=S...	[more]
Q0WLR1	5.5e-73	52.88	KH domain-containing protein At4g26480 OS=Arabidopsis thaliana OX=3702 GN=At4g26...	[more]
Q9FKT4	2.7e-72	53.26	KH domain-containing protein At5g56140 OS=Arabidopsis thaliana OX=3702 GN=At5g56...	[more]

BLAST of CmoCh06G001730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I3I7	4.9e-157	100.00	KH domain-containing protein At2g38610-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FU50	4.9e-157	100.00	KH domain-containing protein At2g38610 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1DU72	1.3e-149	96.45	KH domain-containing protein At3g08620-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1IZS3	3.4e-142	91.13	KH domain-containing protein At3g08620-like isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A2P5B9Y0	2.9e-141	90.78	Polyribonucleotide nucleotidyltransferase OS=Trema orientale OX=63057 GN=TorRG33...	[more]

BLAST of CmoCh06G001730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38610.1	4.3e-129	83.62	RNA-binding KH domain-containing protein	[more]
AT2G38610.2	4.3e-129	83.62	RNA-binding KH domain-containing protein	[more]
AT3G08620.1	1.6e-128	80.99	RNA-binding KH domain-containing protein	[more]
AT4G26480.1	3.9e-74	52.88	RNA-binding KH domain-containing protein	[more]
AT5G56140.1	1.9e-73	53.26	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 132..232 e-value: 1.4E-6 score: 37.9
IPR032377	STAR protein, homodimerisation region	PFAM	PF16544	STAR_dimer	coord: 25..72 e-value: 7.6E-14 score: 51.1
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 19..263 e-value: 1.3E-69 score: 236.3
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 139..257
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 149..187 e-value: 2.3E-5 score: 24.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR11208:SF114	STAR PROTEIN, HOMODIMERIZATION REGION-RELATED	coord: 2..282
None	No IPR available	PROSITE	PS50084	KH_TYPE_1	coord: 139..206 score: 8.491766
None	No IPR available	CDD	cd02395	SF1_like-KH	coord: 137..257 e-value: 5.42172E-54 score: 169.347
IPR045071	KH domain-containing BBP-like	PANTHER	PTHR11208	RNA-BINDING PROTEIN RELATED	coord: 2..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G001730.1	CmoCh06G001730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048024	regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding