CmoCh06G001090 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G001090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	zinc finger protein 8
Location	Cmo_Chr06: 621805 .. 622605 (+)
RNA-Seq Expression	CmoCh06G001090
Synteny	CmoCh06G001090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAGAGTAATAGTGAACGAGAGACTCATGATTTCATGAACGTTGAGTCTTTTTCTCAACTTCCCTTCATTCGTCCTGTGCCAAAAGAAAAGGGTATTAGGCTTTTCGGGATAGAATTCGGTAGTCGAAACGCTGCGGCTGCCACTGCCTCGTCGGTTGAGGATTCGGAGTCCGGTGACATGATTGTTGCATGCGAAGATGGTAAGGAGTATAATAACAACGAGAACAACGGCGGGGAAAGTAACCGGAGATTTGAGTGTCATTTTTGTTGTAGAAATTTCCCTACTTCTCAAGCCTTAGGAGGTCACCAAAACGCCCACAAAAGAGAGCGCCAACATGCAAAAAGGGCTCACCTTCAGTCCAATGCCGCCACCATGGTCCATGGAATTGGACCCTTCTCCGATGCTGCTCATGTCTATGGCCTCATGAACTACCACCGCCTAGGCGCCGCTCCGTCCAGCTTACACTTCAACAATTACCCTTCTTGGAATAGAAATTCACCTTCCGCCGCCGCCCCCGCCACAAGATTTTACGGCAGCCCTGGTGGGTCATATTCTCCGGCAGCCGCAGCGACGCCGATAAACGGAAGCCCATTGGCGATGTGGAGAATCTCAGCTGTTCAAAATAACGTATCGGAGCGGTCGTCGCTGCACCCGTTGCCACTTTTGTCCGGTGATGAGATGACGAAACGCGGCGGCGCCGCCGTGGGCGGCGGTGGTGCCGGCGGGTCTCTACAAACCAGATTGGTTTACGAGGCAAAAACGGCGGAGCAAGTGAGTTTGGATCTTCATCTGTAA

mRNA sequence

ATGGACAAGAGTAATAGTGAACGAGAGACTCATGATTTCATGAACGTTGAGTCTTTTTCTCAACTTCCCTTCATTCGTCCTGTGCCAAAAGAAAAGGGTATTAGGCTTTTCGGGATAGAATTCGGTAGTCGAAACGCTGCGGCTGCCACTGCCTCGTCGGTTGAGGATTCGGAGTCCGGTGACATGATTGTTGCATGCGAAGATGGTAAGGAGTATAATAACAACGAGAACAACGGCGGGGAAAGTAACCGGAGATTTGAGTGTCATTTTTGTTGTAGAAATTTCCCTACTTCTCAAGCCTTAGGAGGTCACCAAAACGCCCACAAAAGAGAGCGCCAACATGCAAAAAGGGCTCACCTTCAGTCCAATGCCGCCACCATGGTCCATGGAATTGGACCCTTCTCCGATGCTGCTCATGTCTATGGCCTCATGAACTACCACCGCCTAGGCGCCGCTCCGTCCAGCTTACACTTCAACAATTACCCTTCTTGGAATAGAAATTCACCTTCCGCCGCCGCCCCCGCCACAAGATTTTACGGCAGCCCTGGTGGGTCATATTCTCCGGCAGCCGCAGCGACGCCGATAAACGGAAGCCCATTGGCGATGTGGAGAATCTCAGCTGTTCAAAATAACGTATCGGAGCGGTCGTCGCTGCACCCGTTGCCACTTTTGTCCGGTGATGAGATGACGAAACGCGGCGGCGCCGCCGTGGGCGGCGGTGGTGCCGGCGGGTCTCTACAAACCAGATTGGTTTACGAGGCAAAAACGGCGGAGCAAGTGAGTTTGGATCTTCATCTGTAA

Coding sequence (CDS)

ATGGACAAGAGTAATAGTGAACGAGAGACTCATGATTTCATGAACGTTGAGTCTTTTTCTCAACTTCCCTTCATTCGTCCTGTGCCAAAAGAAAAGGGTATTAGGCTTTTCGGGATAGAATTCGGTAGTCGAAACGCTGCGGCTGCCACTGCCTCGTCGGTTGAGGATTCGGAGTCCGGTGACATGATTGTTGCATGCGAAGATGGTAAGGAGTATAATAACAACGAGAACAACGGCGGGGAAAGTAACCGGAGATTTGAGTGTCATTTTTGTTGTAGAAATTTCCCTACTTCTCAAGCCTTAGGAGGTCACCAAAACGCCCACAAAAGAGAGCGCCAACATGCAAAAAGGGCTCACCTTCAGTCCAATGCCGCCACCATGGTCCATGGAATTGGACCCTTCTCCGATGCTGCTCATGTCTATGGCCTCATGAACTACCACCGCCTAGGCGCCGCTCCGTCCAGCTTACACTTCAACAATTACCCTTCTTGGAATAGAAATTCACCTTCCGCCGCCGCCCCCGCCACAAGATTTTACGGCAGCCCTGGTGGGTCATATTCTCCGGCAGCCGCAGCGACGCCGATAAACGGAAGCCCATTGGCGATGTGGAGAATCTCAGCTGTTCAAAATAACGTATCGGAGCGGTCGTCGCTGCACCCGTTGCCACTTTTGTCCGGTGATGAGATGACGAAACGCGGCGGCGCCGCCGTGGGCGGCGGTGGTGCCGGCGGGTCTCTACAAACCAGATTGGTTTACGAGGCAAAAACGGCGGAGCAAGTGAGTTTGGATCTTCATCTGTAA

Protein sequence

MDKSNSERETHDFMNVESFSQLPFIRPVPKEKGIRLFGIEFGSRNAAAATASSVEDSESGDMIVACEDGKEYNNNENNGGESNRRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSNAATMVHGIGPFSDAAHVYGLMNYHRLGAAPSSLHFNNYPSWNRNSPSAAAPATRFYGSPGGSYSPAAAATPINGSPLAMWRISAVQNNVSERSSLHPLPLLSGDEMTKRGGAAVGGGGAGGSLQTRLVYEAKTAEQVSLDLHL

Homology

[Close]

BLAST of CmoCh06G001090 vs. ExPASy Swiss-Prot
Match: P93751 (Zinc finger protein 8 OS=Arabidopsis thaliana OX=3702 GN=ZFP8 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.1e-33
Identity = 113/282 (40.07%), Postives = 144/282 (51.06%), Query Frame = 0


Query: 1   MDKSNSERETHDFM--NVESFSQLPFIRPV-PKEKG--IRLFGIEFGSRNAAAATA---- 60
           MD++N  RETHDFM  NVESFSQLPFIR   PKEK   IRLFG E    N+   +A    
Sbjct: 1   MDETNGRRETHDFMNVNVESFSQLPFIRRTPPKEKAAIIRLFGQELVGDNSDNLSAEPSD 60

Query: 61  --SSVEDSESGDMIVACEDGKEYNNNENNGGESNRRFECHFCCRNFPTSQALGGHQNAHK 120
             ++ ++ ES + I   +  KE + +++    +NRRFECH+C RNFPTSQALGGHQNAHK
Sbjct: 61  HQTTTKNDESSENIK--DKDKEKDKDKDKDNNNNRRFECHYCFRNFPTSQALGGHQNAHK 120

Query: 121 RERQHAKRAHLQSNAATMVHGIGPFSDAAHVYGLMNYHRLGAAPSSLHFNNYPSWNRNSP 180
           RERQHAKR  + S     +H   P  D  H+YG +N H         H  +YPSW   + 
Sbjct: 121 RERQHAKRGSMTS----YLHHHQP-HDPHHIYGFLNNH---------HHRHYPSWTTEAR 180

Query: 181 S---AAAPATRFYGSPGGSYSPAAAATPINGSPLAMWRI--SAVQNNVSERSSLHPLPLL 240
           S        T  Y S      P++    INGSPL +WR+  S   N +    S  P    
Sbjct: 181 SYYGGGGHQTPSYYSRNTLAPPSSNPPTINGSPLGLWRVPPSTSTNTIQGVYSSSPASAF 240

Query: 241 SGDEMTKRGGAAVGGGGAGGSLQTRLVYEAKTAEQVSLDLHL 267
              E                +   RL+ +    + VSLDLHL
Sbjct: 241 RSHEQET--------NKEPNNWPYRLM-KPNVQDHVSLDLHL 257

[Close]

BLAST of CmoCh06G001090 vs. ExPASy Swiss-Prot
Match: Q84WI0 (Zinc finger protein GIS OS=Arabidopsis thaliana OX=3702 GN=GIS PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.9e-27
Identity = 110/289 (38.06%), Postives = 140/289 (48.44%), Query Frame = 0


Query: 1   MDKSNSERETHDFMNVESFSQLPFIRPVPKEKG---IRLFGIEFGSRNAAAATAS----- 60
           MD++  E ET DFMNVESFSQLPFIR  PK+K    IR+FG +F  R+ +  T       
Sbjct: 1   MDEATGETETQDFMNVESFSQLPFIRR-PKDKNPKPIRVFGKDFTGRDFSITTGQEDYTD 60

Query: 61  --SVEDSESGDMIVACEDGKEYNNNENNGGESNRRFECHFCCRNFPTSQALGGHQNAHKR 120
               ++ E  +     ED    N+ +NN    NRRFECH+C RNFPTSQALGGHQNAHKR
Sbjct: 61  PYQTKNKEEEEE----EDQTGDNSTDNNSISHNRRFECHYCFRNFPTSQALGGHQNAHKR 120

Query: 121 ERQHAKRAHLQSNAATMVHGIGPFSDAAHVYGLMNYHRLGAAPSSLHFNNYPSWNRNSPS 180
           ERQ AKR            G+  +           YH      +   + +YPSW  N P 
Sbjct: 121 ERQLAKR------------GVSSYF----------YH---PDNNPYSYRHYPSWT-NGPL 180

Query: 181 AAAPATRFYGSPGGSYSPAAAAT-PINGSPLAMWRI-----------SAVQNNVSERSSL 240
            AA   R YG       P+   T P  GS L +WR+           +A  +N S  SS 
Sbjct: 181 TAA---RSYGGFSSGPKPSGYYTRPSYGSQLGLWRLPPRVQGVYNSNAAFTSNGSSSSSN 240

Query: 241 HPLPLLSGDEMTKRGGAAVGGGGAGGSLQT-RLVYEAKTAEQVSLDLHL 267
             LPLL+  +   +  + VGG  A   + +          + VSLDLHL
Sbjct: 241 STLPLLTRSQ--TQLSSQVGGSAAQNRMSSYGYGLSPNVQDHVSLDLHL 253

[Close]

BLAST of CmoCh06G001090 vs. ExPASy Swiss-Prot
Match: Q9FG05 (Zinc finger protein GIS2 OS=Arabidopsis thaliana OX=3702 GN=GIS2 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.8e-21
Identity = 75/172 (43.60%), Postives = 93/172 (54.07%), Query Frame = 0


Query: 9   ETHDFMNVESFSQLPFIRPVPKEKGIRLFGIEFGSRNAAAATASSVEDSESGDMIVACED 68
           +T+DFMNV SFS        PKE+ IRLFG EFG         +S E+SES D       
Sbjct: 2   KTYDFMNVNSFS--------PKERPIRLFGFEFG---------ASHEESESKD------- 61

Query: 69  GKEYNNNENNGGESN--RRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSNAAT 128
              YN N  +  + N  +RF+CH+C RNFPTSQALGGHQNAHKRERQ  KR +L SNAA 
Sbjct: 62  --NYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHKRERQQTKRFNLHSNAAA 121

Query: 129 MVHGIGPFSDAAHVYG--------LMNYHRLGAAPSSLHFNNYPSWNRNSPS 171
             H       A+ +Y          +N  RLG       +N+  S+NR+  S
Sbjct: 122 FFHRQQNHIAASRLYEDRYSLEAVQINDARLGLCRM---YNSSASFNRDRSS 144

[Close]

BLAST of CmoCh06G001090 vs. ExPASy Swiss-Prot
Match: Q9C9H1 (Zinc finger protein GIS3 OS=Arabidopsis thaliana OX=3702 GN=GIS3 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-09
Identity = 57/168 (33.93%), Postives = 72/168 (42.86%), Query Frame = 0


Query: 79  GGESNRRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAHLQS--NAATMVHGIGPFSD 138
           GG   R++EC +CCR F  SQALGGHQNAHK+ERQ  KRA LQ+  NAA           
Sbjct: 66  GGGGERKYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATRNAAA---------- 125

Query: 139 AAHVYGLMNYHRLGAAPSSLHFNNYPSWNRNSPSAAAPATRFYGSPGGSYSPAAAATPIN 198
                   N+   G+A   L         RN      P    +  P    S +A   P+ 
Sbjct: 126 --------NFSNAGSASQFL---------RN------PIVSAFAPPPHLLSSSAVPQPMG 185

Query: 199 GSPLAMWRISAVQNNVSERSSLHPLPLLSGDEMTKRGGAAVGGGGAGG 245
           G  + + R+S  Q +VS     H   +  G           GG GAGG
Sbjct: 186 GPWMYLPRVSPSQLHVS-----HGCVIQDGS----------GGAGAGG 185

[Close]

BLAST of CmoCh06G001090 vs. ExPASy Swiss-Prot
Match: Q39265 (Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-08
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 77  NNGGESNRRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAHL 121
           +  G  +R++EC +CCR F  SQALGGHQNAHK+ERQ  KRA +
Sbjct: 32  SGSGSESRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQM 75

[Close]

BLAST of CmoCh06G001090 vs. ExPASy TrEMBL
Match: A0A6J1FYK1 (zinc finger protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111448765 PE=4 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 5.6e-147
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MDKSNSERETHDFMNVESFSQLPFIRPVPKEKGIRLFGIEFGSRNAAAATASSVEDSESG 60
           MDKSNSERETHDFMNVESFSQLPFIRPVPKEKGIRLFGIEFGSRNAAAATASSVEDSESG
Sbjct: 1   MDKSNSERETHDFMNVESFSQLPFIRPVPKEKGIRLFGIEFGSRNAAAATASSVEDSESG 60

Query: 61  DMIVACEDGKEYNNNENNGGESNRRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAHL 120
           DMIVACEDGKEYNNNENNGGESNRRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAHL
Sbjct: 61  DMIVACEDGKEYNNNENNGGESNRRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAHL 120

Query: 121 QSNAATMVHGIGPFSDAAHVYGLMNYHRLGAAPSSLHFNNYPSWNRNSPSAAAPATRFYG 180
           QSNAATMVHGIGPFSDAAHVYGLMNYHRLGAAPSSLHFNNYPSWNRNSPSAAAPATRFYG
Sbjct: 121 QSNAATMVHGIGPFSDAAHVYGLMNYHRLGAAPSSLHFNNYPSWNRNSPSAAAPATRFYG 180

Query: 181 SPGGSYSPAAAATPINGSPLAMWRISAVQNNVSERSSLHPLPLLSGDEMTKRGGAAVGGG 240
           SPGGSYSPAAAATPINGSPLAMWRISAVQNNVSERSSLHPLPLLSGDEMTKRGGAAVGGG
Sbjct: 181 SPGGSYSPAAAATPINGSPLAMWRISAVQNNVSERSSLHPLPLLSGDEMTKRGGAAVGGG 240

Query: 241 GAGGSLQTRLVYEAKTAEQVSLDLHL 267
           GAGGSLQTRLVYEAKTAEQVSLDLHL
Sbjct: 241 GAGGSLQTRLVYEAKTAEQVSLDLHL 266

[Close]

BLAST of CmoCh06G001090 vs. ExPASy TrEMBL
Match: A0A6J1I822 (zinc finger protein 8-like OS=Cucurbita maxima OX=3661 GN=LOC111470038 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 2.4e-142
Identity = 257/266 (96.62%), Postives = 260/266 (97.74%), Query Frame = 0


Query: 1   MDKSNSERETHDFMNVESFSQLPFIRPVPKEKGIRLFGIEFGSRNAAAATASSVEDSESG 60
           MDKSNSERETHDFMNVESFSQLPFIRP PKEKGIRLFGIEFGSRNAAAATASSVEDSESG
Sbjct: 1   MDKSNSERETHDFMNVESFSQLPFIRPAPKEKGIRLFGIEFGSRNAAAATASSVEDSESG 60

Query: 61  DMIVACEDGKEYNNNENNGGESNRRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAHL 120
           D IVACE+GKEYNNN+NNGGESNRRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAHL
Sbjct: 61  DTIVACENGKEYNNNDNNGGESNRRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAHL 120

Query: 121 QSNAATMVHGIGPFSDAAHVYGLMNYHRLGAAPSSLHFNNYPSWNRNSPSAAAPATRFYG 180
           QSNAATMVHGIGPFSDAAHVYGLMNYHRLGAAPS+LHFNNYPSWNRNSPSAAAP TRFYG
Sbjct: 121 QSNAATMVHGIGPFSDAAHVYGLMNYHRLGAAPSTLHFNNYPSWNRNSPSAAAPPTRFYG 180

Query: 181 SPGGSYSPAAAATPINGSPLAMWRISAVQNNVSERSSLHPLPLLSGDEMTKRGGAAVGGG 240
           SPGGSYSPAA ATPINGSPLAMWRISAVQNNVSERSSLHPLPLLSGDEMTKRG AAVGGG
Sbjct: 181 SPGGSYSPAATATPINGSPLAMWRISAVQNNVSERSSLHPLPLLSGDEMTKRGAAAVGGG 240

Query: 241 GAGGSLQTRLVYEAKTAEQVSLDLHL 267
           GAGGSLQTR VYEAKTAEQVSLDLHL
Sbjct: 241 GAGGSLQTRFVYEAKTAEQVSLDLHL 266

[Close]

BLAST of CmoCh06G001090 vs. ExPASy TrEMBL
Match: A0A6J1J692 (zinc finger protein 8-like OS=Cucurbita maxima OX=3661 GN=LOC111481724 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.8e-116
Identity = 221/273 (80.95%), Postives = 237/273 (86.81%), Query Frame = 0


Query: 1   MDKSNSERETHDFMNVESFSQLPFIRPVPKEKGIRLFGIEFGSRNAAAATASSVEDSESG 60
           MDKSNSERETHDFMNVESFSQLPFIRP PKEKGIRLFGIEFGS+N  AA+ASS+E+SES 
Sbjct: 1   MDKSNSERETHDFMNVESFSQLPFIRPAPKEKGIRLFGIEFGSQNVVAASASSIEESESD 60

Query: 61  DMIVACEDGKEYNNNENNGGESNRRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAHL 120
             ++ACED KE N++ N+GGES+RRFECH+CCRNFPTSQALGGHQNAHKRERQHAKRAHL
Sbjct: 61  YTVIACEDAKENNDDNNSGGESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHL 120

Query: 121 QSNAATMVHGIGPFSDAAHVYGLMNYHRLGAAPSSLHFNNYPSWNRNSPSAA-APATRFY 180
           QSNAA MVHGIG FSDAAHVYGLMNY RLGAAPS L  NNYPSWNRNSP+A+ A ATRFY
Sbjct: 121 QSNAAAMVHGIGAFSDAAHVYGLMNYQRLGAAPSGLQVNNYPSWNRNSPTASTASATRFY 180

Query: 181 GSPGGSYSPAAAATPINGSPLAMWRISAVQNNV-----SERSSLHPLPLLSGDEMTKRGG 240
           GSPGG YSPAA   PINGSPLAMWRISAVQNNV      ERSS+HPLPL SGDEM K G 
Sbjct: 181 GSPGGQYSPAATTAPINGSPLAMWRISAVQNNVPALGSRERSSMHPLPLFSGDEMMKGGS 240

Query: 241 AAVGGGGAGGSLQTRLVYEAKT-AEQVSLDLHL 267
            AV GGG+GGS QTR VYEAKT A+QVSLDLHL
Sbjct: 241 TAVVGGGSGGSHQTRFVYEAKTAADQVSLDLHL 273

[Close]

BLAST of CmoCh06G001090 vs. ExPASy TrEMBL
Match: A0A6J1F2B3 (zinc finger protein GIS2-like OS=Cucurbita moschata OX=3662 GN=LOC111441502 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.3e-116
Identity = 224/275 (81.45%), Postives = 238/275 (86.55%), Query Frame = 0


Query: 1   MDKSNSERETHDFMNVESFSQLPFIRPVPKEKGIRLFGIEFGSRNAAAATASSVEDSESG 60
           MDKSN ERETHDFMNVESFSQLPFIRP PKEKGIRLFGIEFGS+N  AA+ASS+E+SES 
Sbjct: 1   MDKSNPERETHDFMNVESFSQLPFIRPAPKEKGIRLFGIEFGSQNVVAASASSIEESESD 60

Query: 61  DMIVACEDGKEYNN-NENNGGESNRRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAH 120
           D ++ACED KE NN N N+GGES+RRFECH+CCRNFPTSQALGGHQNAHKRERQHAKRAH
Sbjct: 61  DTVIACEDAKENNNDNNNSGGESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAH 120

Query: 121 LQSNAATMVHGIGPFSDAAHVYGLMNYHRL-GAAPSSLHFNNYPSWNRNSPSAA-APATR 180
           LQSNAA MVHGIG FSDAAHVYGLMNY RL GAAPS L  NNYPSWNRNSP+AA A ATR
Sbjct: 121 LQSNAAAMVHGIGAFSDAAHVYGLMNYQRLAGAAPSGLQVNNYPSWNRNSPTAATASATR 180

Query: 181 FYGSPGGSYSPAAAATPINGSPLAMWRISAVQNNV-----SERSSLHPLPLLSGDEMTKR 240
           FYGSPGG YSPAA   PINGSPLAMWRISAVQNNV      ER+S+HPLPL SGDEM K 
Sbjct: 181 FYGSPGGQYSPAATTAPINGSPLAMWRISAVQNNVPAFGSRERTSMHPLPLFSGDEMMKG 240

Query: 241 GGAAVGGGGAGGSLQTRLVYEAKT-AEQVSLDLHL 267
           G  AVGGGG+GGS QTR VYEAKT A+QVSLDLHL
Sbjct: 241 GSTAVGGGGSGGSHQTRFVYEAKTAADQVSLDLHL 275

[Close]

BLAST of CmoCh06G001090 vs. ExPASy TrEMBL
Match: A0A5A7TJW6 (Zinc finger protein 8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005210 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.2e-112
Identity = 225/283 (79.51%), Postives = 236/283 (83.39%), Query Frame = 0


Query: 1   MDKSNSERETHDFMNVESFSQLPFIRPVPKEKGIRLFGIEFGSRNAAAATASSVEDSESG 60
           MDKS SERETHDFMNVESFSQLPFIRP PKEKGIRLFGIEFGSRNAA  +ASS+E+SESG
Sbjct: 1   MDKSTSERETHDFMNVESFSQLPFIRPAPKEKGIRLFGIEFGSRNAATVSASSIEESESG 60

Query: 61  DMIVACEDGKEYNN--NENNGGESNRRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRA 120
           + ++ACED KE NN  N NNGGES+RRFECH+CCRNFPTSQALGGHQNAHKRERQHAKRA
Sbjct: 61  ETVIACEDAKENNNDGNNNNGGESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRA 120

Query: 121 HLQSNAATMVHGIGPFSDAAHVYGLMNYHRLGAAPSSLHFNNYPSWNRNSP---SAAAPA 180
           HLQSNAA MVHGIGPFSDAAHVYGLMNY RLGA     H NNYPSWNRNSP   +AAA A
Sbjct: 121 HLQSNAAAMVHGIGPFSDAAHVYGLMNYQRLGAT----HLNNYPSWNRNSPAATAAAAAA 180

Query: 181 TRFYGSPGGSYSPAAAATPINGSPLAMWRISAVQN-NV------SERSSLHPLPLLSGDE 240
           TRFYGS GG YS AA ATPINGSPLAMWRISAVQN NV       ERSSLHPLPL SGDE
Sbjct: 181 TRFYGSSGGQYSSAATATPINGSPLAMWRISAVQNSNVPSSFGGRERSSLHPLPLFSGDE 240

Query: 241 MTK----RGGAAVGGGGAGGSLQT-RLVYEAKTAEQVSLDLHL 267
           M K     GG AV  GG+GGS QT R VYEAKTA+QVSLDLHL
Sbjct: 241 MMKGAGGGGGTAVSAGGSGGSHQTGRFVYEAKTADQVSLDLHL 279

[Close]

BLAST of CmoCh06G001090 vs. TAIR 10
Match: AT2G41940.1 (zinc finger protein 8 )

HSP 1 Score: 143.7 bits (361), Expect = 2.2e-34
Identity = 113/282 (40.07%), Postives = 144/282 (51.06%), Query Frame = 0


Query: 1   MDKSNSERETHDFM--NVESFSQLPFIRPV-PKEKG--IRLFGIEFGSRNAAAATA---- 60
           MD++N  RETHDFM  NVESFSQLPFIR   PKEK   IRLFG E    N+   +A    
Sbjct: 1   MDETNGRRETHDFMNVNVESFSQLPFIRRTPPKEKAAIIRLFGQELVGDNSDNLSAEPSD 60

Query: 61  --SSVEDSESGDMIVACEDGKEYNNNENNGGESNRRFECHFCCRNFPTSQALGGHQNAHK 120
             ++ ++ ES + I   +  KE + +++    +NRRFECH+C RNFPTSQALGGHQNAHK
Sbjct: 61  HQTTTKNDESSENIK--DKDKEKDKDKDKDNNNNRRFECHYCFRNFPTSQALGGHQNAHK 120

Query: 121 RERQHAKRAHLQSNAATMVHGIGPFSDAAHVYGLMNYHRLGAAPSSLHFNNYPSWNRNSP 180
           RERQHAKR  + S     +H   P  D  H+YG +N H         H  +YPSW   + 
Sbjct: 121 RERQHAKRGSMTS----YLHHHQP-HDPHHIYGFLNNH---------HHRHYPSWTTEAR 180

Query: 181 S---AAAPATRFYGSPGGSYSPAAAATPINGSPLAMWRI--SAVQNNVSERSSLHPLPLL 240
           S        T  Y S      P++    INGSPL +WR+  S   N +    S  P    
Sbjct: 181 SYYGGGGHQTPSYYSRNTLAPPSSNPPTINGSPLGLWRVPPSTSTNTIQGVYSSSPASAF 240

Query: 241 SGDEMTKRGGAAVGGGGAGGSLQTRLVYEAKTAEQVSLDLHL 267
              E                +   RL+ +    + VSLDLHL
Sbjct: 241 RSHEQET--------NKEPNNWPYRLM-KPNVQDHVSLDLHL 257

[Close]

BLAST of CmoCh06G001090 vs. TAIR 10
Match: AT3G58070.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-28
Identity = 110/289 (38.06%), Postives = 140/289 (48.44%), Query Frame = 0


Query: 1   MDKSNSERETHDFMNVESFSQLPFIRPVPKEKG---IRLFGIEFGSRNAAAATAS----- 60
           MD++  E ET DFMNVESFSQLPFIR  PK+K    IR+FG +F  R+ +  T       
Sbjct: 1   MDEATGETETQDFMNVESFSQLPFIRR-PKDKNPKPIRVFGKDFTGRDFSITTGQEDYTD 60

Query: 61  --SVEDSESGDMIVACEDGKEYNNNENNGGESNRRFECHFCCRNFPTSQALGGHQNAHKR 120
               ++ E  +     ED    N+ +NN    NRRFECH+C RNFPTSQALGGHQNAHKR
Sbjct: 61  PYQTKNKEEEEE----EDQTGDNSTDNNSISHNRRFECHYCFRNFPTSQALGGHQNAHKR 120

Query: 121 ERQHAKRAHLQSNAATMVHGIGPFSDAAHVYGLMNYHRLGAAPSSLHFNNYPSWNRNSPS 180
           ERQ AKR            G+  +           YH      +   + +YPSW  N P 
Sbjct: 121 ERQLAKR------------GVSSYF----------YH---PDNNPYSYRHYPSWT-NGPL 180

Query: 181 AAAPATRFYGSPGGSYSPAAAAT-PINGSPLAMWRI-----------SAVQNNVSERSSL 240
            AA   R YG       P+   T P  GS L +WR+           +A  +N S  SS 
Sbjct: 181 TAA---RSYGGFSSGPKPSGYYTRPSYGSQLGLWRLPPRVQGVYNSNAAFTSNGSSSSSN 240

Query: 241 HPLPLLSGDEMTKRGGAAVGGGGAGGSLQT-RLVYEAKTAEQVSLDLHL 267
             LPLL+  +   +  + VGG  A   + +          + VSLDLHL
Sbjct: 241 STLPLLTRSQ--TQLSSQVGGSAAQNRMSSYGYGLSPNVQDHVSLDLHL 253

[Close]

BLAST of CmoCh06G001090 vs. TAIR 10
Match: AT5G06650.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 102.4 bits (254), Expect = 5.6e-22
Identity = 75/172 (43.60%), Postives = 93/172 (54.07%), Query Frame = 0


Query: 9   ETHDFMNVESFSQLPFIRPVPKEKGIRLFGIEFGSRNAAAATASSVEDSESGDMIVACED 68
           +T+DFMNV SFS        PKE+ IRLFG EFG         +S E+SES D       
Sbjct: 2   KTYDFMNVNSFS--------PKERPIRLFGFEFG---------ASHEESESKD------- 61

Query: 69  GKEYNNNENNGGESN--RRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSNAAT 128
              YN N  +  + N  +RF+CH+C RNFPTSQALGGHQNAHKRERQ  KR +L SNAA 
Sbjct: 62  --NYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNAHKRERQQTKRFNLHSNAAA 121

Query: 129 MVHGIGPFSDAAHVYG--------LMNYHRLGAAPSSLHFNNYPSWNRNSPS 171
             H       A+ +Y          +N  RLG       +N+  S+NR+  S
Sbjct: 122 FFHRQQNHIAASRLYEDRYSLEAVQINDARLGLCRM---YNSSASFNRDRSS 144

[Close]

BLAST of CmoCh06G001090 vs. TAIR 10
Match: AT1G68360.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-10
Identity = 57/168 (33.93%), Postives = 72/168 (42.86%), Query Frame = 0


Query: 79  GGESNRRFECHFCCRNFPTSQALGGHQNAHKRERQHAKRAHLQS--NAATMVHGIGPFSD 138
           GG   R++EC +CCR F  SQALGGHQNAHK+ERQ  KRA LQ+  NAA           
Sbjct: 66  GGGGERKYECQYCCREFGNSQALGGHQNAHKKERQQLKRAQLQATRNAAA---------- 125

Query: 139 AAHVYGLMNYHRLGAAPSSLHFNNYPSWNRNSPSAAAPATRFYGSPGGSYSPAAAATPIN 198
                   N+   G+A   L         RN      P    +  P    S +A   P+ 
Sbjct: 126 --------NFSNAGSASQFL---------RN------PIVSAFAPPPHLLSSSAVPQPMG 185

Query: 199 GSPLAMWRISAVQNNVSERSSLHPLPLLSGDEMTKRGGAAVGGGGAGG 245
           G  + + R+S  Q +VS     H   +  G           GG GAGG
Sbjct: 186 GPWMYLPRVSPSQLHVS-----HGCVIQDGS----------GGAGAGG 185

[Close]

BLAST of CmoCh06G001090 vs. TAIR 10
Match: AT5G27880.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-08
Identity = 52/160 (32.50%), Postives = 72/160 (45.00%), Query Frame = 0


Query: 30  KEKGIRLFGIEFGSRNAAAATASSVEDSESGDMIVACEDGKEYNNNENNGGESNRRFECH 89
           KEK  R   ++ GS      +   +E+S  G    A   G+E    +    +SN+ + CH
Sbjct: 29  KEKATRNTILKLGSPQ-EVTSERRIENSSFGSS--AVRRGREI--MKFYPSKSNKIYTCH 88

Query: 90  FCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSNAATMVHGIGPFSDAAHVY-------G 149
           FC + F TSQALGGHQNAHK+ER+  K+          +  + PF D  H+         
Sbjct: 89  FCKKGFSTSQALGGHQNAHKQEREWDKKRKEMEAEYPGLSFLNPFLDKPHILLGGYSQDA 148

Query: 150 LMNYHRLGAAPSSLHFNNYPSWNRNSPSAAAP---ATRFY 180
           L N + LG          YPS+N     A  P    TRF+
Sbjct: 149 LSNENHLGITLDPFKRLIYPSFNAGMNMAVVPRVTPTRFF 183

The following BLAST results are available for this feature:

BLAST of CmoCh06G001090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93751	3.1e-33	40.07	Zinc finger protein 8 OS=Arabidopsis thaliana OX=3702 GN=ZFP8 PE=1 SV=1	[more]
Q84WI0	1.9e-27	38.06	Zinc finger protein GIS OS=Arabidopsis thaliana OX=3702 GN=GIS PE=1 SV=1	[more]
Q9FG05	7.8e-21	43.60	Zinc finger protein GIS2 OS=Arabidopsis thaliana OX=3702 GN=GIS2 PE=2 SV=1	[more]
Q9C9H1	5.3e-09	33.93	Zinc finger protein GIS3 OS=Arabidopsis thaliana OX=3702 GN=GIS3 PE=1 SV=1	[more]
Q39265	2.0e-08	59.09	Zinc finger protein 6 OS=Arabidopsis thaliana OX=3702 GN=ZFP6 PE=2 SV=1	[more]

BLAST of CmoCh06G001090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYK1	5.6e-147	100.00	zinc finger protein 8 OS=Cucurbita moschata OX=3662 GN=LOC111448765 PE=4 SV=1	[more]
A0A6J1I822	2.4e-142	96.62	zinc finger protein 8-like OS=Cucurbita maxima OX=3661 GN=LOC111470038 PE=4 SV=1	[more]
A0A6J1J692	1.8e-116	80.95	zinc finger protein 8-like OS=Cucurbita maxima OX=3661 GN=LOC111481724 PE=4 SV=1	[more]
A0A6J1F2B3	2.3e-116	81.45	zinc finger protein GIS2-like OS=Cucurbita moschata OX=3662 GN=LOC111441502 PE=4...	[more]
A0A5A7TJW6	1.2e-112	79.51	Zinc finger protein 8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of CmoCh06G001090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41940.1	2.2e-34	40.07	zinc finger protein 8	[more]
AT3G58070.1	1.4e-28	38.06	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G06650.1	5.6e-22	43.60	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G68360.1	3.7e-10	33.93	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G27880.1	2.1e-08	32.50	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044291	Zinc finger protein GIS/GIS2/ZFP8	PANTHER	PTHR46547	ZINC FINGER PROTEIN GIS	coord: 1..266
None	No IPR available	PANTHER	PTHR46547:SF7	ZINC FINGER PROTEIN GIS	coord: 1..266
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 88..108
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 86..113 score: 10.803371
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 83..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G001090.1	CmoCh06G001090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009739	response to gibberellin
biological_process	GO:0010090	trichome morphogenesis
biological_process	GO:0010026	trichome differentiation
molecular_function	GO:0003700	DNA-binding transcription factor activity