CmoCh06G000880 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	11 kDa late embryogenesis abundant protein-like
Location	Cmo_Chr06: 532666 .. 533319 (-)
RNA-Seq Expression	CmoCh06G000880
Synteny	CmoCh06G000880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTATTTACTACACGAAATATTTGAGGGAAAAAAATAGAAAAGAAAAGAGTGGGAAAATGCAGTCGGGAAAGAACGCGGCGGAGTCGGTGAAAGAATCGGCCGCCAACGTGGGGGCCTCTGCGAGGGCTGGCATGGAAAAGACCAAAGCCACGGCTCAAGAAAAGGTTCGTAATTTTCTGTTTTTTTTTTTAATTATATTATTAATAATTAGCTGAATGATTTCGAGGCTAATCTCTATTTGAGAAATTATTTAATTCAATTTAACGAATAATTTAACGAGAAGTAAATGCATGCACCAGGTGGACAAAATGCGGGCCCACGATCCATTGGAGAAGGACATGGCGAGCGAAAGGAAAGAGGAGCGGCTTCACGGGGCGGAGCTCGACAAGCAACAGGCGCGTGCAGAACACGCGACAGAGAGGCAGGCCGCTTCGAAGACCGGAGCGCACACCGGTCTGACCACCGGAACTGGAACCGGAACCGGAACCCGTGCCTATGACCCGACCGTGGGCGGCACCGACCGTTGAAGCGTGCGGACTTTTCTGATTATAATAATAGCTTGTTTTGTGTTTTAATGTTGGTAATTAGTAGTTTGGTGGAACTCGTGTACGGTATATTGTGAAATAAATAAATATTTTCATTTTAATAATTA

mRNA sequence

CAGTATTTACTACACGAAATATTTGAGGGAAAAAAATAGAAAAGAAAAGAGTGGGAAAATGCAGTCGGGAAAGAACGCGGCGGAGTCGGTGAAAGAATCGGCCGCCAACGTGGGGGCCTCTGCGAGGGCTGGCATGGAAAAGACCAAAGCCACGGCTCAAGAAAAGGTGGACAAAATGCGGGCCCACGATCCATTGGAGAAGGACATGGCGAGCGAAAGGAAAGAGGAGCGGCTTCACGGGGCGGAGCTCGACAAGCAACAGGCGCGTGCAGAACACGCGACAGAGAGGCAGGCCGCTTCGAAGACCGGAGCGCACACCGGTCTGACCACCGGAACTGGAACCGGAACCGGAACCCGTGCCTATGACCCGACCGTGGGCGGCACCGACCGTTGAAGCGTGCGGACTTTTCTGATTATAATAATAGCTTGTTTTGTGTTTTAATGTTGGTAATTAGTAGTTTGGTGGAACTCGTGTACGGTATATTGTGAAATAAATAAATATTTTCATTTTAATAATTA

Coding sequence (CDS)

ATGCAGTCGGGAAAGAACGCGGCGGAGTCGGTGAAAGAATCGGCCGCCAACGTGGGGGCCTCTGCGAGGGCTGGCATGGAAAAGACCAAAGCCACGGCTCAAGAAAAGGTGGACAAAATGCGGGCCCACGATCCATTGGAGAAGGACATGGCGAGCGAAAGGAAAGAGGAGCGGCTTCACGGGGCGGAGCTCGACAAGCAACAGGCGCGTGCAGAACACGCGACAGAGAGGCAGGCCGCTTCGAAGACCGGAGCGCACACCGGTCTGACCACCGGAACTGGAACCGGAACCGGAACCCGTGCCTATGACCCGACCGTGGGCGGCACCGACCGTTGA

Protein sequence

MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLHGAELDKQQARAEHATERQAASKTGAHTGLTTGTGTGTGTRAYDPTVGGTDR

Homology

[Close]

BLAST of CmoCh06G000880 vs. ExPASy Swiss-Prot
Match: Q01417 (18 kDa seed maturation protein OS=Glycine max OX=3847 GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.8e-19
Identity = 56/101 (55.45%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH 60
           MQ GK A ES+KE+A N+GASA+AGMEKTKAT QEK ++M A DP++K++A+++KE +++
Sbjct: 1   MQGGKKAGESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMN 60

Query: 61  GAELDKQQARAEHATERQAASKTG--AHTGLTTGTGTGTGT 100
            AELDKQ AR  +   +Q+A+  G   H   TTGTGTGT T
Sbjct: 61  QAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTAT 101

[Close]

BLAST of CmoCh06G000880 vs. ExPASy Swiss-Prot
Match: P46515 (11 kDa late embryogenesis abundant protein OS=Helianthus annuus OX=4232 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-18
Identity = 61/101 (60.40%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH 60
           MQSGKNAA S KE+AANV ASA+AGMEKTKA+ QEK +KM AHDP++K+MA E+KEER H
Sbjct: 1   MQSGKNAAASAKETAANVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKH 60

Query: 61  GAELDKQQARAEHATERQAAS-KTGAHTGLTTG-TGTGTGT 100
            AE +KQ A+  +A ++Q     TG H+  TT  TG  TGT
Sbjct: 61  EAEYEKQAAKEHNAAQKQTTGIGTGTHSYTTTNVTGHRTGT 101

[Close]

BLAST of CmoCh06G000880 vs. ExPASy Swiss-Prot
Match: Q9FG31 (Late embryogenesis abundant protein 46 OS=Arabidopsis thaliana OX=3702 GN=LEA46 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-11
Identity = 42/91 (46.15%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 9   ESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLHGAELDKQQ 68
           +S+KE+A+N+ ASA++GM+KTKAT +EK +KM+  DP++K MA++ KE++++ AE+ K++
Sbjct: 2   QSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAEMQKRE 61

Query: 69  ARAEHATERQAASKTGAHTGLTTGTGTGTGT 100
            R  +A  ++AA   GA TGL  GT T + T
Sbjct: 62  TRQHNAAMKEAA---GAGTGLGLGTATHSTT 89

[Close]

BLAST of CmoCh06G000880 vs. ExPASy Swiss-Prot
Match: Q00747 (Protein LE25 OS=Solanum lycopersicum OX=4081 GN=LE25 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.8e-11
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 1   MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH 60
           MQ+GK+AA           ++A+AGMEKTKA  QEK ++M   DPL+K+MA+E+KE+R+ 
Sbjct: 1   MQTGKDAA-----------SAAKAGMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVA 60

Query: 61  GAELDKQQARAEHATERQAASKTGAHTGLTTGTGTGTGT 100
            AE+ K+ A+A+HA E+Q A+ TG  TG T    TG  T
Sbjct: 61  AAEMGKRDAKAQHAAEKQGAATTG--TGTTGYGATGNHT 86

[Close]

BLAST of CmoCh06G000880 vs. ExPASy Swiss-Prot
Match: P09441 (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum OX=3635 PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 6.4e-09
Identity = 50/105 (47.62%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 13  ESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLHGAELDKQQARAE 72
           +S  +  ASA+AGMEK KA+ QEKVD+M+  DP EK+MA ERKEER   AEL KQ+AR  
Sbjct: 2   QSMKDAAASAKAGMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQEARHH 61

Query: 73  HATERQAASKTGAHTGLTTG------TGTGTGTRAYD----PTVG 108
           +AT           TG TT       TG   GT  +D    PT G
Sbjct: 62  NATAGHVGGGGIGGTGYTTAGYNIGDTGGYGGTGGHDNRGYPTAG 106

[Close]

BLAST of CmoCh06G000880 vs. ExPASy TrEMBL
Match: A0A6J1FQA5 (11 kDa late embryogenesis abundant protein-like OS=Cucurbita moschata OX=3662 GN=LOC111445987 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH 60
           MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH
Sbjct: 1   MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH 60

Query: 61  GAELDKQQARAEHATERQAASKTGAHTGLTTGTGTGTGTRAYDPTVGGTDR 112
           GAELDKQQARAEHATERQAASKTGAHTGLTTGTGTGTGTRAYDPTVGGTDR
Sbjct: 61  GAELDKQQARAEHATERQAASKTGAHTGLTTGTGTGTGTRAYDPTVGGTDR 111

[Close]

BLAST of CmoCh06G000880 vs. ExPASy TrEMBL
Match: A0A6J1I1X4 (11 kDa late embryogenesis abundant protein-like OS=Cucurbita maxima OX=3661 GN=LOC111470154 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.1e-43
Identity = 106/111 (95.50%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 1   MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH 60
           MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH
Sbjct: 1   MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH 60

Query: 61  GAELDKQQARAEHATERQAASKTGAHTGLTTGTGTGTGTRAYDPTVGGTDR 112
           GAELDKQQARAEHA ERQAASKTGAHTGLT    TGTGTRAYDPTVGGTDR
Sbjct: 61  GAELDKQQARAEHAAERQAASKTGAHTGLT----TGTGTRAYDPTVGGTDR 107

[Close]

BLAST of CmoCh06G000880 vs. ExPASy TrEMBL
Match: A0A0A0LBV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G808370 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.4e-29
Identity = 84/108 (77.78%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH 60
           MQSG+NAAE++KESAANVGASA+AGMEKTKATAQEKVDKMRAHDP EKDMA ERK+ER+ 
Sbjct: 1   MQSGRNAAEAMKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPFEKDMARERKDERIQ 60

Query: 61  GAELDKQQARAEHATERQAASKTGAHTGLTTGTGTGTGTRAYDPTVGG 109
            AELDKQQAR EHA ERQ    TG  TG  T TG GTGT  YDPTVGG
Sbjct: 61  EAELDKQQARVEHAAERQ----TG--TGPGTRTGLGTGTHTYDPTVGG 102

[Close]

BLAST of CmoCh06G000880 vs. ExPASy TrEMBL
Match: A0A6J1DVT9 (11 kDa late embryogenesis abundant protein-like OS=Momordica charantia OX=3673 GN=LOC111024847 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.2e-27
Identity = 83/117 (70.94%), Postives = 92/117 (78.63%), Query Frame = 0


Query: 1   MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH 60
           MQSG+NAAES KESAANVGA+ARAGM+KTKATAQEKVDKMRAHDP+EKDMA  RKEER+ 
Sbjct: 1   MQSGRNAAESAKESAANVGAAARAGMDKTKATAQEKVDKMRAHDPVEKDMAEARKEERIT 60

Query: 61  GAELDKQQARAEHATERQA--------ASKTGAHTGLTTGTGTGTGTRAYDPTVGGT 110
            AE++KQQARA HA ERQA        A+ TG   G TTGTGTG GTR    T+GGT
Sbjct: 61  EAEINKQQARAAHAAERQAGTGTLAGLATGTGTGVGPTTGTGTGAGTR----TLGGT 113

[Close]

BLAST of CmoCh06G000880 vs. ExPASy TrEMBL
Match: A0A5D3DPJ3 (18 kDa seed maturation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005470 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.0e-25
Identity = 72/94 (76.60%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MQSGKNAAESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLH 60
          MQSG+NAAE+VKESAANVGASA+AGMEKTKATAQEKVDKMRAHDP EK+M  E+K+ER+ 
Sbjct: 1  MQSGRNAAEAVKESAANVGASAKAGMEKTKATAQEKVDKMRAHDPYEKEMVREKKDERIQ 60

Query: 61 GAELDKQQARAEHATERQAASKTGAHTGLTTGTG 95
           A+LDKQQAR EHA ERQA +  G  TGL TGTG
Sbjct: 61 EADLDKQQARFEHAAERQAGTGPGTRTGLGTGTG 94

[Close]

BLAST of CmoCh06G000880 vs. TAIR 10
Match: AT5G06760.1 (Late Embryogenesis Abundant 4-5 )

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-12
Identity = 42/91 (46.15%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 9   ESVKESAANVGASARAGMEKTKATAQEKVDKMRAHDPLEKDMASERKEERLHGAELDKQQ 68
           +S+KE+A+N+ ASA++GM+KTKAT +EK +KM+  DP++K MA++ KE++++ AE+ K++
Sbjct: 2   QSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAEMQKRE 61

Query: 69  ARAEHATERQAASKTGAHTGLTTGTGTGTGT 100
            R  +A  ++AA   GA TGL  GT T + T
Sbjct: 62  TRQHNAAMKEAA---GAGTGLGLGTATHSTT 89

The following BLAST results are available for this feature:

BLAST of CmoCh06G000880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q01417	6.8e-19	55.45	18 kDa seed maturation protein OS=Glycine max OX=3847 GN=GMPM1 PE=2 SV=1	[more]
P46515	2.6e-18	60.40	11 kDa late embryogenesis abundant protein OS=Helianthus annuus OX=4232 PE=2 SV=...	[more]
Q9FG31	4.0e-11	46.15	Late embryogenesis abundant protein 46 OS=Arabidopsis thaliana OX=3702 GN=LEA46 ...	[more]
Q00747	6.8e-11	47.47	Protein LE25 OS=Solanum lycopersicum OX=4081 GN=LE25 PE=2 SV=1	[more]
P09441	6.4e-09	47.62	Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum OX=3635 PE=2 SV=...	[more]

BLAST of CmoCh06G000880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQA5	1.6e-47	100.00	11 kDa late embryogenesis abundant protein-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I1X4	4.1e-43	95.50	11 kDa late embryogenesis abundant protein-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0LBV1	3.4e-29	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G808370 PE=3 SV=1	[more]
A0A6J1DVT9	9.2e-27	70.94	11 kDa late embryogenesis abundant protein-like OS=Momordica charantia OX=3673 G...	[more]
A0A5D3DPJ3	1.0e-25	76.60	18 kDa seed maturation protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of CmoCh06G000880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06760.1	2.8e-12	46.15	Late Embryogenesis Abundant 4-5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..111
None	No IPR available	PANTHER	PTHR33493:SF2	LATE EMBRYOGENESIS ABUNDANT PROTEIN 46	coord: 1..104
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PFAM	PF03760	LEA_1	coord: 9..78 e-value: 3.2E-23 score: 82.1
IPR005513	Late embryogenesis abundant protein, LEA_1 subgroup	PANTHER	PTHR33493	LATE EMBRYOGENESIS ABUNDANT PROTEIN 6-RELATED	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000880.1	CmoCh06G000880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy