CmoCh06G000850 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr06: 510372 .. 513543 (-)
RNA-Seq Expression	CmoCh06G000850
Synteny	CmoCh06G000850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCTGGGCTTCGATCTTCAGGCGTTTTCATCTTGCCGCTCAATCGTTTAGCGCTAATCGCTTGGCTTGTAAAGCATTTTCCAGCTGTTGCGATCCATATCAGAGGCGTGCGCGGCAAGATCATCCGGTTAGCCTCTCATTGGTTGCTCTGATATTCGACCGCGATTGGATGATTCTTCGCGAGAGTCACTCCTGGAAATTATGCACTACTCGCATTTTTGTTTGGTAGGTTCAATTGCAGGATTTTTCTTCATTTCGCATCTGTTTTGATGGGTATTTTGGTTGTTCTGGATTGTGCGTTTCCCCCTTTAACTGGACTTGAGTGGTCCTTTACTTGATGCGTAGCTCGAGATGGAGGAGATGGAACCTCCTTTTTTTCTAGTTTGAATGATTTTCTTTGCTTCTTCGCTGTGTTCTCTAGTGACAGCTCCGATCGGCGATAATCTGTTTTGTGGTACTCAAGATTTTGGATTTGAGGGGTATCTATTTTGACATGGACTTGATTTCTTTGAGTTTGTTTGAATTGACTGAGACCATAATTAATCTGTTGAAACTTTATAATCCATGCATTTGGGGGTAAGAGGGGGTGCTTGACAAAAGATTATTGGCTGTAGACGTGTGTGTTTTTTTATCGAAGTTGACCTTTTGCCACTCTCTCTTTATTCCAGTCTATTTTTCATGATTACTAGATTGGCTCAAAGAGAACGAAGAATAATAATTTATGTTATGCAGCTTTTTGGTTGTAATTACATTTTTAAAGTATTGCCCTCAATTGATTGTATACTTGGAACAGCGAGATTCTTCAAATCTTCCATATTTGCCTTAGATAATAGTGGTTCTTTTGGGAGATTGCCAGATTGGAGTGTGATACTTGCCTACCGAAGTAACGAGAAACTAAACTACAAAAATGAGTGGAGGGGTCTCAAGGTGAAGGTGGAGGTGGGATTGATGTTGTGTTAATATATTCATACACGATGTTTTATTATCTTTAGTTTATGAAGTACTCGAGTCATTGGAGTTGGGAATCTTATGCCTTCTTTGATGAAAATAGAGGTATAATGTTCTAAGGATTTGAATTCTTTTGTGCTGTTGTATGTTTCTAGGTTCCACCCTATGCTTTTTAATTGGGTTCTTTGTGTAGGTCTACTCGTACTTGGATGCTTCATCCATTAAGGGAGTTCATTGGAGAGCTGTTCAGACGGCGATCTTCATTAATGGTAGGGGATCTTCTTTAATGGCAGAGACAACTTTTCTTGGAATTTCGATTTACATTTTAATTGAAAACTAAGTTTTTATCGTCTTTGGATTATTGATTAATGGTCTAGTTTCTTTTTTCTTTTTTTTTTTAGTTCAACAATGTGTCGGGTGAGATATTTGATCGAGGGTACATCTTTTATGCCAATTGTGCTATACTTATGTTGGTTGATTAGTAGCATCTTTCTTGTGTTTTTTGTGTTCTCTTGCAAGAGTCTACGTTAAAAGACTGCTAAACGACGATTAAATAAAGTTCTAAATTTTGAACGTGATTAAGCAGCTGGCTAGGAGCTGATTTTTCTATGACAGTTTCCTATTTCCAAGAACAAAAACTAATGAACACGTACTTGCTTCTAGTAGTTTTTGAATTTGTTATCTTGCTCTCTTAATCTGTTCTGACATGATGTTTTCATTTTAGAAGAATTGAGATTGAGCATGTGCAAGTAGTTCTTTTCTTGATATCCAAGAGCGTCTGGGATGCTTGTGCGCACCTCAACTATTCTCTGGGACAAACTCCTTACCCTATTATATTTGGTTGTCAAGGTAACTTGCTGACTTGAACTCATTCTCTCTAAAAGCTCATTATTATTTACATTGTCTTCTTGACTAGTTGGCCAACCCATCATAGTTCATAGCAAAAGGTCAAAAACCAAAAGCGCAAAATGATTTGAAAACAATCTCTCATAGATAGGTCCAAAATTTTCTCCTCCAAAACCTGATACTGTTTCTGCTCATTTGAGTTTCCATTTTCACTGCATTTAACAGTTACATGCACGAAGATTCCATTTCATTGCCACGCCTGTTTGGACTTACTTGATATGTTGCATAATTAGGCATTTCTGTGAAGGGGCAAGTCAAAATTGCCCCTTCATTTTCGTTTGTCAGTTTCAATTTAGGGACGAGGTAAGGGTATGAATGACCGATTAGTTGTTGTTGGACACTGGAAACCATAGAAAAGGGATGTCATCTGAATTCTGAATATGTTGGCGGGTTATTCTTTACCCCATTGACTCATGCAACATATCAAGAAGCGTTTCCTAGAGTTGGTTATTGTTTGATTTGCCTCACATAACTTTTCTAAGGCAACTCCATTTCTAAAGCTGTTGAAAATAAGTTGGGCTCATTTCAATACAGATGGAAAACAAAAGGACAACTTTCATTCTTTGTCTGACCCCAATTCATTTACCAACACTTGAGAGTTATTTTTCTGATCCATTCTACTTTCATGTTTGCATTGGCTTGCAGTTGCGATGAACCGATGATACAACTTACACAGAACACAAATATTGATACCGCAGCATGAGAGACGAGTGAAGAATTCAGATTTTGATGAAGCCAGAATTGAAGCCATAGTTCAATTAGAAGCTACAGAAGGCTAAATTCCAACACTTGGTTATTTTTCTGATCCATTTTACTTTCGTGTTTCCATCGGCTTGCAGTTGCGTTGAATCAACGATACAGTTTACGCAGAGCTGCATATTGATACAGCAGCATAAGATAAGAGTGAAGAATTCAGAGTTTGATGAAGCAGGAATTGAAGCCATAGTGCAATTAGAAGCTACAGAGGGCTAAATTTTCACGATGTTGTCTACTATTCATATAGTGCCATAGATATTCATAAGAAAGGCAAACTCTCCCTCCTACCTGGAAGAAAAAACCCATTAAAGGAAAAGAAAAAACAAAAGAATTTGATCCACTAACATAATAACTTTTTGGTACAACTCAGTAATGGTAAGACATTTCAATATTCAGATTTGGCAATGTGATGCTGTTGGGATGGCACTCGCACTGCCACTTGCACTTGGTAGCTCAAGTATCGTTGCTTTTTTCAACTAATTGGCCATGAACATTTGGCTGCGCCCCTTCTGCTATGCATTAAAAGAAGATGATTAGATATGGAACATCCACTTCGCT

mRNA sequence

ATGGTTTCTGGGCTTCGATCTTCAGGCGTTTTCATCTTGCCGCTCAATCGTTTAGCGCTAATCGCTTGGCTTGTAAAGCATTTTCCAGCTGTTGCGATCCATATCAGAGGCGTGCGCGGCAAGATCATCCGGTTCAATTGCAGGATTTTTCTTCATTTCGCATCTGTTTTGATGGGTATTTTGGTTGTTCTGGATTTGACAGCTCCGATCGGCGATAATCTGTTTTGTGGTACTCAAGATTTTGGATTTGAGGGATTGGCTCAAAGAGAACGAAGAATAATAATTTATGTTATGCAGCTTTTTGGTTGTAATTACATTTTTAAAGTATTGCCCTCAATTGATTGTATACTTGGAACAGCGAGATTCTTCAAATCTTCCATATTTGCCTTAGATAATAGTGGTTCTTTTGGGAGATTGCCAGATTGGAGTGTGATACTTGCCTACCGAAGTAACGAGAAACTAAACTACAAAAATGAGTGGAGGGGTCTCAAGGTCTACTCGTACTTGGATGCTTCATCCATTAAGGGAGTTCATTGGAGAGCTGTTCAGACGGCGATCTTCATTAATGAATTGAGATTGAGCATGTGCAAGTAGTTCTTTTCTTGATATCCAAGAGCGTCTGGGATGCTTGTGCGCACCTCAACTATTCTCTGGGACAAACTCCTTACCCTATTATATTTGGTTGTCAAGTTGCGATGAACCGATGATACAACTTACACAGAACACAAATATTGATACCGCAGCATGAGAGACGAGTGAAGAATTCAGATTTTGATGAAGCCAGAATTGAAGCCATAGTTCAATTAGAAGCTACAGAAGGCTAAATTCCAACACTTGGTTATTTTTCTGATCCATTTTACTTTCGTGTTTCCATCGGCTTGCAGTTGCGTTGAATCAACGATACAGTTTACGCAGAGCTGCATATTGATACAGCAGCATAAGATAAGAGTGAAGAATTCAGAGTTTGATGAAGCAGGAATTGAAGCCATAGTGCAATTAGAAGCTACAGAGGGCTAAATTTTCACGATGTTGTCTACTATTCATATAGTGCCATAGATATTCATAAGAAAGGCAAACTCTCCCTCCTACCTGGAAGAAAAAACCCATTAAAGGAAAAGAAAAAACAAAAGAATTTGATCCACTAACATAATAACTTTTTGGTACAACTCAGTAATGGTAAGACATTTCAATATTCAGATTTGGCAATGTGATGCTGTTGGGATGGCACTCGCACTGCCACTTGCACTTGGTAGCTCAAGTATCGTTGCTTTTTTCAACTAATTGGCCATGAACATTTGGCTGCGCCCCTTCTGCTATGCATTAAAAGAAGATGATTAGATATGGAACATCCACTTCGCT

Coding sequence (CDS)

ATGGTTTCTGGGCTTCGATCTTCAGGCGTTTTCATCTTGCCGCTCAATCGTTTAGCGCTAATCGCTTGGCTTGTAAAGCATTTTCCAGCTGTTGCGATCCATATCAGAGGCGTGCGCGGCAAGATCATCCGGTTCAATTGCAGGATTTTTCTTCATTTCGCATCTGTTTTGATGGGTATTTTGGTTGTTCTGGATTTGACAGCTCCGATCGGCGATAATCTGTTTTGTGGTACTCAAGATTTTGGATTTGAGGGATTGGCTCAAAGAGAACGAAGAATAATAATTTATGTTATGCAGCTTTTTGGTTGTAATTACATTTTTAAAGTATTGCCCTCAATTGATTGTATACTTGGAACAGCGAGATTCTTCAAATCTTCCATATTTGCCTTAGATAATAGTGGTTCTTTTGGGAGATTGCCAGATTGGAGTGTGATACTTGCCTACCGAAGTAACGAGAAACTAAACTACAAAAATGAGTGGAGGGGTCTCAAGGTCTACTCGTACTTGGATGCTTCATCCATTAAGGGAGTTCATTGGAGAGCTGTTCAGACGGCGATCTTCATTAATGAATTGAGATTGAGCATGTGCAAGTAG

Protein sequence

MVSGLRSSGVFILPLNRLALIAWLVKHFPAVAIHIRGVRGKIIRFNCRIFLHFASVLMGILVVLDLTAPIGDNLFCGTQDFGFEGLAQRERRIIIYVMQLFGCNYIFKVLPSIDCILGTARFFKSSIFALDNSGSFGRLPDWSVILAYRSNEKLNYKNEWRGLKVYSYLDASSIKGVHWRAVQTAIFINELRLSMCK

Homology

[Close]

BLAST of CmoCh06G000850 vs. ExPASy TrEMBL
Match: A0A6J1GUC1 (uncharacterized protein LOC111457164 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457164 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.2e-50
Identity = 104/108 (96.30%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 86  LAQRERRIIIYVMQLFGCNYIFKVLPSIDCILGTARFFKSSIFALDNSGSFGRLPDWSVI 145
           LAQRERRIIIYVMQLFGCNYIFKVLPSIDCILGTARFFKSSIFALDNSGSFGRLPDWSVI
Sbjct: 5   LAQRERRIIIYVMQLFGCNYIFKVLPSIDCILGTARFFKSSIFALDNSGSFGRLPDWSVI 64

Query: 146 LAYRSNEKLNYKNEWRGLK----VYSYLDASSIKGVHWRAVQTAIFIN 190
           LAYRSNEKLNYKNEWRGLK    VYSYLDASSIKGVHWRAVQTAIFIN
Sbjct: 65  LAYRSNEKLNYKNEWRGLKVKVEVYSYLDASSIKGVHWRAVQTAIFIN 112

[Close]

BLAST of CmoCh06G000850 vs. ExPASy TrEMBL
Match: A0A6J1I6A1 (uncharacterized protein LOC111470024 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470024 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 3.6e-50
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 86  LAQRERRIIIYVMQLFGCNYIFKVLPSIDCILGTARFFKSSIFALDNSGSFGRLPDWSVI 145
           LAQRERRIIIYVMQLFGCNY+FKVLPSIDCILGTARFFKSSIFALDNS SFGRLPDWS+I
Sbjct: 5   LAQRERRIIIYVMQLFGCNYMFKVLPSIDCILGTARFFKSSIFALDNSDSFGRLPDWSMI 64

Query: 146 LAYRSNEKLNYKNEWRGLK------VYSYLDASSIKGVHWRAVQTAIFINELRLS 195
           LA RSNEKLNYKNEWRGLK      VYSYLDASSIKGVHWRAVQTAIFINELRL+
Sbjct: 65  LANRSNEKLNYKNEWRGLKVKVKVEVYSYLDASSIKGVHWRAVQTAIFINELRLA 119

[Close]

BLAST of CmoCh06G000850 vs. ExPASy TrEMBL
Match: A0A6J1I2S8 (uncharacterized protein LOC111470024 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470024 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 8.9e-49
Identity = 104/116 (89.66%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 86  LAQRERRIIIYVMQLFGCNYIFKVLPSIDCILGTARFFKSSIFALDNSGSFGRLPDWSVI 145
           LAQRERRIIIYVMQLFGCNY+FKVLPSIDCILGTARFFKSSIFALDNS SFGRLPDWS+I
Sbjct: 5   LAQRERRIIIYVMQLFGCNYMFKVLPSIDCILGTARFFKSSIFALDNSDSFGRLPDWSMI 64

Query: 146 LAYRSNEKLNYKNEWRGLK------VYSYLDASSIKGVHWRAVQTAIFIN-ELRLS 195
           LA RSNEKLNYKNEWRGLK      VYSYLDASSIKGVHWRAVQTAIFIN ELRL+
Sbjct: 65  LANRSNEKLNYKNEWRGLKVKVKVEVYSYLDASSIKGVHWRAVQTAIFINEELRLA 120

[Close]

BLAST of CmoCh06G000850 vs. ExPASy TrEMBL
Match: A0A6J1I578 (uncharacterized protein LOC111470024 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111470024 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 8.9e-49
Identity = 104/116 (89.66%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 86  LAQRERRIIIYVMQLFGCNYIFKVLPSIDCILGTARFFKSSIFALDNSGSFGRLPDWSVI 145
           LAQRERRIIIYVMQLFGCNY+FKVLPSIDCILGTARFFKSSIFALDNS SFGRLPDWS+I
Sbjct: 5   LAQRERRIIIYVMQLFGCNYMFKVLPSIDCILGTARFFKSSIFALDNSDSFGRLPDWSMI 64

Query: 146 LAYRSNEKLNYKNEWRGLK------VYSYLDASSIKGVHWRAVQTAIFIN-ELRLS 195
           LA RSNEKLNYKNEWRGLK      VYSYLDASSIKGVHWRAVQTAIFIN ELRL+
Sbjct: 65  LANRSNEKLNYKNEWRGLKVKVKVEVYSYLDASSIKGVHWRAVQTAIFINEELRLA 120

[Close]

BLAST of CmoCh06G000850 vs. ExPASy TrEMBL
Match: A0A6J1I2T3 (uncharacterized protein LOC111470024 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111470024 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 48/58 (82.76%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 144 VILAYRSNEKLNYKNEWRGLK------VYSYLDASSIKGVHWRAVQTAIFIN-ELRLS 195
           +ILA RSNEKLNYKNEWRGLK      VYSYLDASSIKGVHWRAVQTAIFIN ELRL+
Sbjct: 1   MILANRSNEKLNYKNEWRGLKVKVKVEVYSYLDASSIKGVHWRAVQTAIFINEELRLA 58

The following BLAST results are available for this feature:

BLAST of CmoCh06G000850 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G000850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GUC1	1.2e-50	96.30	uncharacterized protein LOC111457164 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I6A1	3.6e-50	90.43	uncharacterized protein LOC111470024 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1I2S8	8.9e-49	89.66	uncharacterized protein LOC111470024 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1I578	8.9e-49	89.66	uncharacterized protein LOC111470024 isoform X3 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1I2T3	1.1e-14	82.76	uncharacterized protein LOC111470024 isoform X4 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmoCh06G000850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000850.1	CmoCh06G000850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane