CmoCh06G000760 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000760
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr06: 460487 .. 461359 (+)
RNA-Seq Expression	CmoCh06G000760
Synteny	CmoCh06G000760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCAGCTGGAACCCCAGACCTCGATGAGAATCGACAATGGTGATGTTGTCGAAGAGCATTCGGGTGAAATTGAACCAACTGGCGCTACCCAGCTTGATGGCAGAAGATTTGGTTCTAATCCAGCAGTTAGTGGCAGTTAAGTTGAAGACAGGGCCATTAGATGTTTTGGGGCAGATTGCATCATCTCCGGTGTCGATTCTGCACCTTGTAATGAAGGTATTATTGGAGTCTTCAATATCAATCCCGTCGTTGTTTGGTGTATCGAAATCTCCATAAATTGAAACATCTTCGATGATTGTGTTCTCGCATCGAACCAGGTGCAAGCTGCATCAAATTTCACTTAGAGAAATGCAGTAATTATGTAAGAGAGAGGGAGGGAGAGTGTCGCACGCACCACCAGTGAGCAGGCTGATTCAAACTAACATTCGAAACCCTAACATTCTTCGACCCGATGAACCCAATCAGATCCGGCCTGCACTCATCGCCATAGCACGCCCCGGTCTTGTTCCAACTCACCATCACGTTCTTCCTCTTATCGAACTTCTCCACGAATTTCAGCCCCTGCCCATCCACCACGCCTCCGCCGGTGATCTCAACATCGCTCGCGTTCTCCGCCACCACCGCGTACCACCTCGACGAATCCATGGGATAGTCCTCCATCCTCGTTCCGGCCAGCACGGTGGCGCCAGGTTGGATGTCCAATACGACGCCGGATTGAAGCCATATCGTCGCGGTCAGGTAGGTACCCGGCGGAAATATAACGTAGCAGCGGACCGGCGAGGGGCAGTTGTTAATAGCGGACTGAATCGCTGCAGTGTCGTAGTGGACTCCATCGCCGATGGCTCCGAAGTCGGTGACGGAGAAAGAGGTTGA

mRNA sequence

CGCAGCTGGAACCCCAGACCTCGATGAGAATCGACAATGGTGATGTTGTCGAAGAGCATTCGGGTGAAATTGAACCAACTGGCGCTACCCAGCTTGATGGCAGAAGATTTGGTTCTAATCCAGCAGTTAGTGGCAGTTAAGTTGAAGACAGGGCCATTAGATGTTTTGGGGCAGATTGCATCATCTCCGGTGTCGATTCTGCACCTTGTAATGAAGAGAGAGGGAGGGAGAGTGTCGCACGCACCACCAGTGAGCAGGCTGATTCAAACTAACATTCGAAACCCTAACATTCTTCGACCCGATGAACCCAATCAGATCCGGCCTGCACTCATCGCCATAGCACGCCCCGGTCTTGTTCCAACTCACCATCACGTTCTTCCTCTTATCGAACTTCTCCACGAATTTCAGCCCCTGCCCATCCACCACGCCTCCGCCGGTGATCTCAACATCGCTCGCGTTCTCCGCCACCACCGCGTACCACCTCGACGAATCCATGGGATAGTCCTCCATCCTCGTTCCGGCCAGCACGGTGGCGCCAGGTTGGATGTCCAATACGACGCCGGATTGAAGCCATATCGTCGCGGTCAGGTAGGTACCCGGCGGAAATATAACGTAGCAGCGGACCGGCGAGGGGCAGTTGTTAATAGCGGACTGAATCGCTGCAGTGTCGTAGTGGACTCCATCGCCGATGGCTCCGAAGTCGGTGACGGAGAAAGAGGTTGA

Coding sequence (CDS)

ATGGTGATGTTGTCGAAGAGCATTCGGGTGAAATTGAACCAACTGGCGCTACCCAGCTTGATGGCAGAAGATTTGGTTCTAATCCAGCAGTTAGTGGCAGTTAAGTTGAAGACAGGGCCATTAGATGTTTTGGGGCAGATTGCATCATCTCCGGTGTCGATTCTGCACCTTGTAATGAAGAGAGAGGGAGGGAGAGTGTCGCACGCACCACCAGTGAGCAGGCTGATTCAAACTAACATTCGAAACCCTAACATTCTTCGACCCGATGAACCCAATCAGATCCGGCCTGCACTCATCGCCATAGCACGCCCCGGTCTTGTTCCAACTCACCATCACGTTCTTCCTCTTATCGAACTTCTCCACGAATTTCAGCCCCTGCCCATCCACCACGCCTCCGCCGGTGATCTCAACATCGCTCGCGTTCTCCGCCACCACCGCGTACCACCTCGACGAATCCATGGGATAGTCCTCCATCCTCGTTCCGGCCAGCACGGTGGCGCCAGGTTGGATGTCCAATACGACGCCGGATTGAAGCCATATCGTCGCGGTCAGGTAGGTACCCGGCGGAAATATAACGTAGCAGCGGACCGGCGAGGGGCAGTTGTTAATAGCGGACTGAATCGCTGCAGTGTCGTAGTGGACTCCATCGCCGATGGCTCCGAAGTCGGTGACGGAGAAAGAGGTTGA

Protein sequence

MVMLSKSIRVKLNQLALPSLMAEDLVLIQQLVAVKLKTGPLDVLGQIASSPVSILHLVMKREGGRVSHAPPVSRLIQTNIRNPNILRPDEPNQIRPALIAIARPGLVPTHHHVLPLIELLHEFQPLPIHHASAGDLNIARVLRHHRVPPRRIHGIVLHPRSGQHGGARLDVQYDAGLKPYRRGQVGTRRKYNVAADRRGAVVNSGLNRCSVVVDSIADGSEVGDGERG

Homology

[Close]

BLAST of CmoCh06G000760 vs. ExPASy TrEMBL
Match: A0A7C9AQD5 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-20
Identity = 65/157 (41.40%), Postives = 95/157 (60.51%), Query Frame = 0


Query: 71  PVSRLIQTNIRNPNILRPDEPNQIRPALIAIARPGLVPTHHHVLPLIELLHEFQPLPIHH 130
           P  RL +  I N +IL P++PNQ  P LI  A P L+P HHH+LPLI+ LH+ Q LP+  
Sbjct: 14  PKGRLDEVYIPNVDILTPNKPNQSGPTLIPTATPRLIPAHHHILPLIKPLHKRQSLPVDF 73

Query: 131 ASAGDLNIARVLRHHRVPPRRIHGIVLHPRSGQHGGARLDVQYDAGLKPYRRGQVGTR-R 190
            S+ D ++  +LR H VP RR+   +L  R  ++    L+ Q DAG +  RR +V  R  
Sbjct: 74  PSSSDPHVLHLLRQHSVPSRRLRRKILLLRPCKNPRTLLNHQNDAGSQVDRRSEVRPRGG 133

Query: 191 KYNVAADRRGAVVNSGLNRCSVVVDSIADGSEVGDGE 227
           +++VA  RR   V+  L+   V+V ++A G++VGDGE
Sbjct: 134 EHHVAGIRRRTRVDRRLDGLGVIVAAVAGGAKVGDGE 170

[Close]

BLAST of CmoCh06G000760 vs. ExPASy TrEMBL
Match: A0A0A9PAS6 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.5e-12
Identity = 60/162 (37.04%), Postives = 83/162 (51.23%), Query Frame = 0


Query: 71  PVSRLIQTNIRNPNILRPDEPNQIRPALIAIARPGLVPTHHHVLPLIELLHEFQPLPIHH 130
           PV  L++ ++ +P++L  DE ++ RPAL+A+A PG VP HH VL L    HE   L +  
Sbjct: 4   PVGGLVECDVVDPDVLGVDEADEPRPALVALAVPGGVPAHHDVLLLAGSDHERPALAVDL 63

Query: 131 ASAGDLNIARVLRHHRVPPR------RIHGIVLHPRSGQHGGARLDVQYDAGLKPYRRGQ 190
           A+  D     VL  H VPP       R+HG    PR+G H       + D      RR  
Sbjct: 64  AAPRDARAGGVLGEHDVPPARLARVVRLHGPAQQPRAGGHIQHHARPEVDG-----RRQV 123

Query: 191 VGTRRKYNVAADRRGAVVNSGLNRCSVVVDSIADGSEVGDGE 227
           V  RR+ + A  RR A V+ GL+R  VV  ++A  + VG  E
Sbjct: 124 VPGRREEDAAPARRRAGVDGGLDRRRVVAGTVARRAVVGHRE 160

The following BLAST results are available for this feature:

BLAST of CmoCh06G000760 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G000760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7C9AQD5	3.5e-20	41.40	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]
A0A0A9PAS6	3.5e-12	37.04	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of CmoCh06G000760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000760.1	CmoCh06G000760.1	mRNA