CmoCh06G000700 (gene) Cucurbita moschata (Rifu) v1

BLAST of CmoCh06G000700 vs. ExPASy Swiss-Prot
Match: Q9SVY0 (DNA-directed RNA polymerase I subunit 1 OS=Arabidopsis thaliana OX=3702 GN=NRPA1 PE=3 SV=1)

HSP 1 Score: 1859.0 bits (4814), Expect = 0.0e+00
Identity = 987/1707 (57.82%), Postives = 1229/1707 (72.00%), Query Frame = 0

Query: 7    GASESVKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDETTLCKS 66
            GAS+ V++V FSFMTE +VRKHS +KVT+PIL D +G P  GGLYD  +G  D+   C S
Sbjct: 22   GASQVVESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNS 81

Query: 67   CGQRPFYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKCASQLEL 126
            CGQ    CPGHCGHI+LV P+Y+PLLF +L N LQR CF CHHF A    VE+  SQL+L
Sbjct: 82   CGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKL 141

Query: 127  ILNGDVVKAKELDSELLTES------------SDSKHSNEMQNMQPKKWTSLQFSEAISA 186
            I+ GD+V AK+L+S   T+S            +DS    E  +++ ++WTSLQF+E  + 
Sbjct: 142  IIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTSLQFAEVTAV 201

Query: 187  VNKFLKPKQRECKNCGAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGI 246
            +  F++   + C  C   NPK+ +P FGW+ M  +  +   AN IRG K        +  
Sbjct: 202  LKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKL------KKST 261

Query: 247  SSIEEENTVPQTTVINMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFSAGHLLPSEVKH 306
            SS+E  +    + +  +SEV+  D    K + E S EV+ E    ++ S   LLPSEV++
Sbjct: 262  SSVENPDGFDDSGIDALSEVEDGD----KETREKSTEVAAEF--EEHNSKRDLLPSEVRN 321

Query: 307  ILKRLWKNEAMLCSFISDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQ 366
            ILK LW+NE   CSFI D+   G   K  +SMFFLE+VLVPP KFRPP  GGDS+MEHPQ
Sbjct: 322  ILKHLWQNEHEFCSFIGDLWQSG-SEKIDYSMFFLESVLVPPTKFRPPTTGGDSVMEHPQ 381

Query: 367  TVLLNKVLQSNISLGNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVSVGIC 426
            TV LNKV++SN  LGNA  NK + SK++  W +LQ+S+NVLFDSKTA+   Q+D S GIC
Sbjct: 382  TVGLNKVIESNNILGNACTNKLDQSKVIFRWRNLQESVNVLFDSKTATVQSQRD-SSGIC 441

Query: 427  QLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQ 486
            QLLEKKEG+FRQKMMGKRVN ACRSVISPDPY+AVN+IGIPP FAL+LTYPERVT WNV+
Sbjct: 442  QLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVE 501

Query: 487  KLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSD-DY 546
            KLR AIINGP+ HPGATHY DK +T+K  L  + K+R +I+RKL SSRG   + G   D 
Sbjct: 502  KLREAIINGPDIHPGATHYSDKSSTMK--LPSTEKARRAIARKLLSSRGATTELGKTCDI 561

Query: 547  EFEGKIVNRHLEDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDG 606
             FEGK V+RH+ DGDIVLVNRQPTLHKPS+MAH VRVLKGEKT+R+HYANCSTYNADFDG
Sbjct: 562  NFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDG 621

Query: 607  DEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFD 666
            DEMNVHFPQDEISRAEAYNIVNANNQY +P++GEP+RALIQDHI+S+VLLTK+DTFL  D
Sbjct: 622  DEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKD 681

Query: 667  EFSQLLYSSGISTSRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALL 726
             F+QLL+SSG++       S + G+K+ +   ++E+L V PA+ KP PLWTGKQV+TA+L
Sbjct: 682  HFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVL 741

Query: 727  DHITRGAPPFCVEKDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVP 786
            + IT+G PPF VEK  K+P  FFK R     S +VK   GD +K+K              
Sbjct: 742  NQITKGHPPFTVEKATKLPVDFFKCR-----SREVKPNSGDLTKKK-------------- 801

Query: 787  DEGNSKRDDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNT 846
                       + D+   + L++D L I KNE V GVIDKAQF DYGLVHTV ELYGSN 
Sbjct: 802  -----------EIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNA 861

Query: 847  AGVLLSVMSRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVK 906
            AG LLSV SRLFTV+LQ HGFTCGVDDL++++ MD+ER KQLQ CEN+GE+V      + 
Sbjct: 862  AGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGID 921

Query: 907  DGEKLDPMALQLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSV 966
               ++DP  ++  IE+ +  +GE AL SLDR + + LN+   +  V+ DLLS+GLLK   
Sbjct: 922  VDVQIDPQDMRSRIERILYEDGESALASLDRSIVNYLNQ-CSSKGVMNDLLSDGLLKTPG 981

Query: 967  NNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGF 1026
             NCISLMT SGAKG   NFQQISSHLGQQ LEGKRVPRMVSGKTLPCF PWDW+ RAGGF
Sbjct: 982  RNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGF 1041

Query: 1027 IVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDA 1086
            I DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV YD TVRDA
Sbjct: 1042 ISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDA 1101

Query: 1087 DGSIIQFRYGEDGVDVHKNAFIIKFEALAANCEMIYQK-SHHQPDSFNQYINELPSVLQE 1146
            DGSIIQF+YGEDGVDVH+++FI KF+ L  N +M+ QK S       + YI++LP  L++
Sbjct: 1102 DGSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSYISDLPISLKK 1161

Query: 1147 KAEVIYNSFAKDK--APGLGQKDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMT 1206
             AE    +   ++  A    ++++ ++L+++K+ +SLAQPGEPVGVLAAQS+GEPSTQMT
Sbjct: 1162 GAEKFVEAMPMNERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMT 1221

Query: 1207 LNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKI 1266
            LNTFH AGRGEMNVTLGIPRLQEILMTA+ +IKTPIMTCPL +G + +DA  + ++L+KI
Sbjct: 1222 LNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKI 1281

Query: 1267 TVADIIESMEVTVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVR 1326
            TVADII+SME++VVP++  + E+CSI+KL+I  Y  E  P+H  ++ ED EE +  VF+R
Sbjct: 1282 TVADIIKSMELSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLR 1341

Query: 1327 ELEDSIQNEMLLLSRISGIKNFVPDSQSKGLSES-DKVSSSQREENDDDDDVGNDLDVAE 1386
            +LED+I+  M +L RI GI N V    +   +++ D VS  Q E++ DDD  G ++D   
Sbjct: 1342 KLEDAIETHMKMLHRIRGIHNDVTGPIAGNETDNDDSVSGKQNEDDGDDDGEGTEVD--- 1401

Query: 1387 DLGFDMKKQKLRTTDEMDYEDDSEEELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDA 1446
            DLG D +KQK + TDEMDYE++SE+E N     +G E       E D  N+DT E+ K+ 
Sbjct: 1402 DLGSDAQKQKKQETDEMDYEENSEDETNEPSSISGVED-----PEMDSENEDT-EVSKED 1461

Query: 1447 TSEDQTEIIDVSKSNSKGKTTKTSNKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKF-T 1506
            T E Q E ++  K     K  K  +KKK+ K  F R   DR IFV  +G  FEVHFKF T
Sbjct: 1462 TPEPQEESMEPQKEVKGVKNVKEQSKKKRRK--FVRAKSDRHIFVKGEGEKFEVHFKFAT 1521

Query: 1507 NEPHILLTQIAQRTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNDTKVRKNIKPEEKEKV 1566
            ++PHILL QIAQ+TAQKV IQ+SGKI RC    C + QVIYHG++ K R+ I  +EK+  
Sbjct: 1522 DDPHILLAQIAQQTAQKVYIQNSGKIERCTVANCGDPQVIYHGDNPKERREISNDEKKAS 1581

Query: 1567 PALQTTGVDFKTLWELQDELDARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGIS 1626
            PAL  +GVDF  LWE QD+LD RY+YSN IH ML  +GVEAARETIIREI ++F SYGIS
Sbjct: 1582 PALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGIS 1641

Query: 1627 VNIRHLTLIADYMTHSGGYRPMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLE 1686
            V+IRHL LIADYMT SGGYRPM+R+GGIA+S SPF RMTFETA +FIVQAA +GE DTLE
Sbjct: 1642 VSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLE 1670

Query: 1687 TPSARICLGLPVKMGTGSFDLMQKIDV 1696
            TPSARICLGLP   GTG FDLMQ++++
Sbjct: 1702 TPSARICLGLPALSGTGCFDLMQRVEL 1670

BLAST of CmoCh06G000700 vs. ExPASy Swiss-Prot
Match: P15398 (DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa1 PE=1 SV=2)

HSP 1 Score: 931.4 bits (2406), Expect = 1.4e-269
Identity = 626/1811 (34.57%), Postives = 934/1811 (51.57%), Query Frame = 0

Query: 9    SESVKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDETTLCKSCG 68
            S  +K+V F     D+V K S  ++  P+LLD +  P  GGLYD A+G   + ++C +C 
Sbjct: 8    SSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATCH 67

Query: 69   QRPFYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKCASQLELIL 128
                YCPGH GHI L  P Y+PL F  ++NLL+ TC  CHHF+    +V     +L+L+ 
Sbjct: 68   LDERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRLKLLD 127

Query: 129  NGDVVKAKELDSELLTES-------------SDSKHS----------------------- 188
             G + +++ +++  LTE+             SDS+ S                       
Sbjct: 128  YGLLNESEMVENVSLTEAIIKNSNGTPLEDGSDSEDSGLGHDDIAKDAATLMRIRDEFVA 187

Query: 189  ----NEMQNMQ-PKKWTSLQFSEAISAVNKFLK--PKQRECKNCGAKNPKITRPTFGWLH 248
                +  QN     + T+L   E    V  F      +++C NC + +P   +  F  + 
Sbjct: 188  KSIADSRQNAHIDAQLTTLLLHERKKVVRAFYHAISSRKQCDNCQSFSPNFRKEGFAKIF 247

Query: 249  MTGLPGAHK---------RANAIRG-CKPASVSSGAEGISSIEEENTVPQTTVINMSEVD 308
               L G +          R++ +R   K      G +G S    E+ V          +D
Sbjct: 248  EIPLSGKNLQFMEQTGKIRSDVLRDTSKKHHEDEGYDGDSDSSNESEV--------EGID 307

Query: 309  VFDDTATKASVEDSEEVSPEIFVPKNFSAGHLLPSEVKHILKRLWKNEAMLCSFISDIQH 368
            +F+        ED   +  +   P    A ++  +EV++ L+RL+  E ++   +S +  
Sbjct: 308  LFE--------EDPNPLKNKSKSPIAHGAKYMTSTEVRNHLRRLFVKENVV---LSRLYA 367

Query: 369  QGYGNKAGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQTVLLNKVLQSNISLGN----- 428
               G  A   MFFL+ + VPP +FRP +K GD + E+ Q  LL ++LQS+I + +     
Sbjct: 368  HKRGKPASADMFFLQNIAVPPTRFRPASKMGDEVHENIQNELLTRILQSSIQIASLSKDS 427

Query: 429  -AHANKSE----------HSKIVRLWMDLQQSINVLFDS--KTASGPGQKDVSVGICQLL 488
                N  E             ++  ++ LQ  +N L DS    +SG   + V  GI Q+L
Sbjct: 428  TVEVNPDEKEGLERRSRAFELLINAFVQLQHDVNSLIDSNRNPSSGGQSRTVPPGIKQIL 487

Query: 489  EKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLR 548
            EKKEG+FR+ MMGKRVN+A RSVISPDP +  NEIG+PP FA +LTYPE VT +N  ++R
Sbjct: 488  EKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMR 547

Query: 549  NAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEFE- 608
            NA+INGP   PGA+H  ++  T+   +  + + R +++ +L + +  ++   S  Y +  
Sbjct: 548  NAVINGPHKWPGASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLI---SSPYSYSR 607

Query: 609  ----GKIVNRHLEDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFD 668
                 K V RH+ +GD++++NRQPTLHKPS+MAH  R+L GEKTIRMHYANC++YNADFD
Sbjct: 608  LINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFD 667

Query: 669  GDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKF 728
            GDEMN+HFPQ   +R+EA  I N ++QY+ PTSG+P+R LIQDH++  V LT KDTF   
Sbjct: 668  GDEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTR 727

Query: 729  DEFSQLLYSSGISTSRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTAL 788
            DE+ QLL+            + KP +          +  + PA+ +P   WTGKQ+++++
Sbjct: 728  DEYQQLLF-----------QALKPDE----TGMYGRIKTLPPAIQRPGIYWTGKQIISSV 787

Query: 789  LDHITRGAPPFCVEKDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEV 848
            L ++     P                    N  SK KV                 GK   
Sbjct: 788  LLNLKPSDRPGL------------------NLKSKAKVP----------------GKYWS 847

Query: 849  PDEGNSKRDDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFG--DYGLVHTVQELYG 908
            PD                    ++ S+L    EL+ G++DK+ FG   +GLVH+V ELYG
Sbjct: 848  PDS-------------------EEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYG 907

Query: 909  SNTAGVLLSVMSRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFL 968
             + AG LLSV+SRLFT Y QM GFTC +DDL L +  D  R + L+  ++ G +    ++
Sbjct: 908  PDIAGRLLSVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYV 967

Query: 969  KVKDGEKLDPMALQLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLK 1028
             +     +    L  N+E+   +  +  L  LD  M  ++N  T  S ++   + +GLL 
Sbjct: 968  GLSTDSPI--ALLNANLEEVYRD--DEKLQGLDAAMKGKMNGLT--SSIINKCIPDGLLT 1027

Query: 1029 PSVNNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRA 1088
                N +  MT SGAKG   N  QIS  LGQQ+LEG+RVP MVSGK+LP F P++ ++++
Sbjct: 1028 KFPYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKS 1087

Query: 1089 GGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTV 1148
            GGFI  RFLTG+ PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL+K+LE L V YDHTV
Sbjct: 1088 GGFIASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTV 1147

Query: 1149 RDADGSIIQFRYGEDGVDVHKNAFIIKFEALAANCEMIYQ-------------------- 1208
            RD+DGSI+QF YGED +DV K   + +FE  A N + + Q                    
Sbjct: 1148 RDSDGSIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQKYKVKSVLSAVDSETASSYA 1207

Query: 1209 -KSHHQPDSFNQYINELP-----SVLQEKAEVIYNSFAKDKAPGL------GQKDD---- 1268
             K+  +P  ++  +++ P       + EK +   + + +     L       + DD    
Sbjct: 1208 KKALKKPYKYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDDSLLN 1267

Query: 1269 ---FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRL 1328
               F  L++ +Y  SL  PGE VGVLA+QSIGEPSTQMTLNTFH AG G  NVTLGIPRL
Sbjct: 1268 ESKFKALMQLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRL 1327

Query: 1329 QEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKR 1388
            +EI+MTAS +I+TP MT  L +G S   A     ++ K+ +++++  + VT     Q   
Sbjct: 1328 REIIMTASANIQTPTMTLRLNDGVSDKRASAFCKEVNKLVLSEVVRQVRVTEKISGQGSD 1387

Query: 1389 EICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLS--RISGI 1448
            E    Y + +  Y  +       V  E++E      F++ L   I++ +      +  G 
Sbjct: 1388 EQSKTYAIRLDLYSRDEYQDEYGVLQEEIESTFSNRFLKILNRIIKSYLAKSKQRKSGGK 1447

Query: 1449 KNFVPD--SQSKGLSESDKV---SSSQREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTD 1508
             + VP+     K L + D+      +Q    D+D+D  N+  V+        + K   + 
Sbjct: 1448 DDTVPEVGQALKPLEDIDEAPIEGRAQEALEDEDNDATNEKMVS--------RSKQHASY 1507

Query: 1509 EMDYEDDSEEELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSN 1568
            E   E D      +K  +   +  +D+ ++    +D+++   K+    ++   + +S+  
Sbjct: 1508 EGPDEADKVALRQLKGSNKVEDVNMDEEEDEGFKSDESVSDFKERKLLEKQNTVSISERR 1567

Query: 1569 SKGKTTKTSNKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQ 1628
                 T      K+  S     D+D   +V+ +    E+ F    E  +L+  + ++   
Sbjct: 1568 ELQLKT-----AKEILSNCKHLDFD---YVNGEWATVELVFPINTE-KLLMVSLVEKACS 1627

Query: 1629 KVSIQSSGKIIRCQQITCKEGQVIYHGNDTKVRKNIKPEEK--EKVPALQTTGVDFKTLW 1688
            +  I     I RC                       KP +   + VP + T GV+ K +W
Sbjct: 1628 ETVIHEIPGITRCFS---------------------KPPDSALDTVPKVITEGVNLKAIW 1683

Query: 1689 ELQDELDARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMT 1694
            E  +E+    IY+NDI A+L+ YGVEAAR  I+ E+ ++F  YGI+V+ RHL+LIADYMT
Sbjct: 1688 EFYNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMT 1683

BLAST of CmoCh06G000700 vs. ExPASy Swiss-Prot
Match: Q86H36 (DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium discoideum OX=44689 GN=polr1a PE=3 SV=1)

HSP 1 Score: 913.3 bits (2359), Expect = 4.1e-264
Identity = 631/1778 (35.49%), Postives = 920/1778 (51.74%), Query Frame = 0

Query: 10   ESVKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDETTLCKSCGQ 69
            E + +V+F F T D+VRK S  ++      D +G PV GGL+DPA+G       C +C  
Sbjct: 11   EEISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTGPAERCATCSL 70

Query: 70   RPFYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKCASQLELILN 129
                CPGH GHI+L  P YNP+ F  +  LL+  CF CHHF+ G   + +   +L L+  
Sbjct: 71   DFIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHCHHFKHGKPIINQFIEELTLLFK 130

Query: 130  GDVVKAKEL-DSELLTESSDSKHSNEMQNMQPKKWTSLQFSEAISAVNKFLKPKQRECKN 189
            GDVVKA+ L +  +L    + K          KK  S +  E +   ++    K    +N
Sbjct: 131  GDVVKARNLRERNVLLRGYEEK----------KKGKSNEEGEEVMESDESDSDKMDTDEN 190

Query: 190  CGAKNPKITRPTFGWLHMTGLPGAHK----RANAIRGCKPA------------SVSSGAE 249
                       T G +   G+  A +    +A  I   K              ++  G  
Sbjct: 191  ----------KTNGKIICDGVFNAKEIYSGKATHIEDFKREVFKEFFGSFSGYAIPCGNC 250

Query: 250  GISSIEEENTVPQTTVINMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFSA-------- 309
            G  S    N     +   +  + + D  ATK S          I +P NFS+        
Sbjct: 251  GAYSPRLRN--GDASKSKLFIMPLHDKYATKNSA---------IKLPTNFSSVKEQTEHG 310

Query: 310  GHLLPSEVKHILKRLWKNE-----AMLCSFISDIQHQGYGNKAGHSMF---------FLE 369
                P EV   +K+L++NE      +L   +  + ++G   K     F         F+ 
Sbjct: 311  TWFAPWEVLDNMKKLFENEKEILDMLLGHLVPIVTNKGGAKKNVGRQFTKESNVDSLFMR 370

Query: 370  AVLVPPIKFRPPAKGGDSIMEHPQT------VLLNKVLQSNISLGNAHANKSEHSKIVRL 429
               V P ++RPP        EHPQ       V  NK+++ +I  G   A       +V  
Sbjct: 371  VFPVTPARYRPPNFVNGRRSEHPQNSHYKGMVKSNKMIRQSIDAGEGKA-----KFLVNS 430

Query: 430  WMDLQQSINVLFDSKTASGPGQKDVSVGICQLLEKKEGMFRQKMMGKRVNFACRSVISPD 489
              DLQ  +N ++D+ + S     +V+ GI Q+LEKKEG+FR+ MMGKRVN+A R+VISPD
Sbjct: 431  VCDLQMHVNNMYDN-SKSNSNTNEVANGIKQILEKKEGLFRKHMMGKRVNYAARTVISPD 490

Query: 490  PYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNL 549
              L  NE+G+P YFA  LT+P+ VT++N  +L  A+INGPE +PGA    D+   +    
Sbjct: 491  ISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPGANFIEDENGHLINLS 550

Query: 550  KPSRKSRISISRKLPSS-----RGVVVDQGSDDYEFEGKIVNRHLEDGDIVLVNRQPTLH 609
            K S++ RI++S+ L +S     RGV             K V RHL  GD VL NRQPTLH
Sbjct: 551  KESQEKRIALSKTLLTSHPHAPRGV------------NKKVYRHLLSGDYVLANRQPTLH 610

Query: 610  KPSIMAHVVRVL-KGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANN 669
            KP IM H V+VL K EKT+RMHY+NCSTYNADFDGDEMN+HFPQ  ++ AE   I   N 
Sbjct: 611  KPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAEIREICANNY 670

Query: 670  QYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLYSS--GISTSRPCASSEKP 729
            QY+ P +G P+R LIQDHI++ VLLTK+DT     +F  +LY+S   ++T  P  +    
Sbjct: 671  QYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAILYASCWSVNTKHPIVTPP-- 730

Query: 730  GQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGAPPFCVEKDVKIPRGFF 789
                             P + KP PLW+GKQ+++A L+ +T G  P  +E   KIP   +
Sbjct: 731  -----------------PCILKPVPLWSGKQLISAALNQLTIGRAPLNLEAPSKIPTKMW 790

Query: 790  KSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSKRDDYSKFDKLKAERLDD 849
             ++                        G+++ +                          D
Sbjct: 791  GTK------------------------GLEITR--------------------------D 850

Query: 850  DSLLIFKNELVRGVIDKAQFG--DYGLVHTVQELYGSNTAGVLLSVMSRLFTVYLQMHGF 909
              ++I +NE+V G++DK  FG   YGLVHT  ELY  + AG LL+++ R+FT YLQ  GF
Sbjct: 851  SHVIIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGF 910

Query: 910  TCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVKDGEKLDPMALQLNIEKTISNN 969
            TCGVDDLL+    +KE + +++  +   E+ +    K  D  K D    +    K + + 
Sbjct: 911  TCGVDDLLM---KNKEEKFRVETLKKANEEGYTVAAKFADLSKYDEQKARDFFSKALQSE 970

Query: 970  GEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVNNCISLMTTSGAKGGTANFQQ 1029
             E A   LD  +   LN+ T  SKV+  L+  G  KP   N  SLMT SGAKG   NF Q
Sbjct: 971  REVA--RLDGLLKKGLNQYT--SKVIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQ 1030

Query: 1030 ISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAG 1089
            +S  LGQQ+LEGKRVPRMVSGKTLP F  +D ++RAGGF++DRFLTG+RPQ+Y+FHCMAG
Sbjct: 1031 VSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCMAG 1090

Query: 1090 REGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDADGSIIQFRYGEDGVDVHKNAF 1149
            REGL+DTAVKTSRSGYLQRCLIK+LE L V YD+TVR++DGS+IQF YGED +++ K  +
Sbjct: 1091 REGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLEIGKTPY 1150

Query: 1150 IIKFEALAANCEMI--------------------YQKS-HHQPD------SFN------- 1209
            + KF  +A N E+                     Y +S   QP+       FN       
Sbjct: 1151 LTKFPIIAENYELFKSQFPMEQLIEQLKNQEVVEYNRSIKTQPELDPVMSKFNPSSDLGC 1210

Query: 1210 ---QYINELPSVLQEKAEVIYNSFAKDKAPGLGQKDDFIRLLENKYLSSLAQPGEPVGVL 1269
                ++N+L   ++   + +  +       G   + DF  L+   Y  S+  PGE VG+L
Sbjct: 1211 VSESFMNQLNHYIESNPQKLIKT--TSNRDGKINEKDFRNLMYLYYSRSMVSPGESVGLL 1270

Query: 1270 AAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYSM 1329
             AQSIGEPSTQMTLNTFH AGRGE NVTLGIPRL+E++MTA+    TP+M   + +  + 
Sbjct: 1271 CAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLRELIMTATTKPITPLMEFQINDSTNK 1330

Query: 1330 DDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLEIRFYPLESNPQHAH-VS 1389
             + + +A  L+ + ++DII+  ++TV  + Q   +    Y +EI F P        H + 
Sbjct: 1331 VETEKMAKYLEILKLSDIIK--DITVQEYFQ---DTNRNYDIEIEFIPTLQQVLSLHRIK 1390

Query: 1390 SEDLEEIL-EFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKGLSESDKVSSSQREEN 1449
             + L ++  EF  V + +   Q ++ + +   G+ + V  S    L E D ++ +  +  
Sbjct: 1391 EKQLNKLFGEFNKVIKRQVKSQGKLKVNNGDIGLGSKVRGSD---LVEDDSLTINDDDAP 1450

Query: 1450 DDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKEPSAGFESEVDQGDEA 1509
             +DD   ND + ++       K+        D +  + +  N K+ +  +E   ++ +E 
Sbjct: 1451 ANDDTTNNDENTSQQQPSSQNKKSKSKVITQDDDSVAAKSKNKKKQNVNYEDGEEEAEEK 1510

Query: 1510 DITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAKSEFSRKDYDRAIFVS 1569
            D  +D+      ++ +E+  +  DV   + +   +++SN       EF +K     I V+
Sbjct: 1511 D--SDE-----GESEAEESDDKSDVDSDSDEISNSRSSNSFSDESIEFDQKKLTFTISVA 1570

Query: 1570 AKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNDTK 1629
                        ++   +L+  I +  A K  ++S   I RC      E QV   G  T 
Sbjct: 1571 ------------SDSKKVLMLGIVETEASKFVLKSCKGITRC---FVNEKQV---GGKTH 1614

Query: 1630 VRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHAMLQTYGVEAARETII 1689
                          ++Q+ GV+   ++EL+D+L    IY+NDI+A+LQ YGVEA R+ + 
Sbjct: 1631 Y-------------SIQSEGVNLSEIFELRDKLKIDEIYTNDIYAILQKYGVEACRQAVT 1614

Query: 1690 REIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSISPFSRMTFETAARFI 1694
             EI N+F++YGISV+ RHL L+ DYMT  GGYR +NR+ GI ++ SPF +M+FET   F+
Sbjct: 1691 SEISNVFAAYGISVDKRHLILLGDYMTFEGGYRALNRI-GIENNTSPFQKMSFETTFSFL 1614

BLAST of CmoCh06G000700 vs. ExPASy Swiss-Prot
Match: P10964 (DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPA190 PE=1 SV=2)

HSP 1 Score: 897.9 bits (2319), Expect = 1.8e-259
Identity = 601/1799 (33.41%), Postives = 917/1799 (50.97%), Query Frame = 0

Query: 12   VKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDETTLCKSCGQRP 71
            + +V F  +T  E+R  SA ++T P +LD +G PV+GGLYD A+G+     LC +CG   
Sbjct: 11   ITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAF-LRNLCSTCGLDE 70

Query: 72   FYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKCASQLELILNGD 131
             +CPGH GHI+L  P YNPL F  L+  L+ +C  CHHFR    +V + A +L L+  G 
Sbjct: 71   KFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGL 130

Query: 132  VVKAKEL--------------DSELLTESSD------SKHSNEMQN-------MQPKKWT 191
            + ++ +L              D E + ++ D      SK S ++ +        +  ++ 
Sbjct: 131  IDESYKLDEITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNELKSKRSEYV 190

Query: 192  SLQFSEAIS--------------------AVNKFLKP--KQRECKNCGAKNPKITRPTFG 251
             +  ++A+S                     V++F K    + +C NCG  +PK  +  F 
Sbjct: 191  DMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFSPKFRKDGFT 250

Query: 252  WLHMTGLPGAHKRANAIRGCKPASVSSGAEGISSIEEENTVPQTTVINMSEVDVFD-DTA 311
             +  T L       N ++G                     + Q  +    +    D    
Sbjct: 251  KIFETALNEKQITNNRVKG--------------------FIRQDMIKKQKQAKKLDGSNE 310

Query: 312  TKASVEDSEEVSPEIFVPKNFSAGHLLPSEVKHILKRLWKNEAMLCSFISDIQHQGYGNK 371
              A+ E+S +V           + ++L +EVK+IL  +++ E  +  ++   +       
Sbjct: 311  ASANDEESFDVGRNPTTRPKTGSTYILSTEVKNILDTVFRKEQCVLQYVFHSRPNLSRKL 370

Query: 372  AGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQTVLLNKVLQSNISLGNAHANKSE---- 431
                 FF++ ++VPP +FR P+K G+ + E+ Q  LL+KVL +++ + + + + S+    
Sbjct: 371  VKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLNDDLSKLQKD 430

Query: 432  ----------HSKIVRLWMDLQQSINVLFDSKTASGPGQKDVSV-GICQLLEKKEGMFRQ 491
                       S+++  ++ +Q  +N   DS  A G     V + G+ Q LEKKEG+FR+
Sbjct: 431  KVSLEDRRVIFSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRK 490

Query: 492  KMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPET 551
             MMGKRVN+A RSVISPDP +  NEIG+PP FA++LTYPE VTA+N+ +LR A+INGP+ 
Sbjct: 491  HMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDK 550

Query: 552  HPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEFEGKIVNRHLED 611
             PGAT   ++  ++   +  S + R +++ +L      +    +       K V RH+++
Sbjct: 551  WPGATQIQNEDGSLVSLIGMSVEQRKALANQL------LTPSSNVSTHTLNKKVYRHIKN 610

Query: 612  GDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEIS 671
             D+VL+NRQPTLHK S+M H VRVL  EKT+R+HYAN   YNADFDGDEMN+HFPQ+E +
Sbjct: 611  RDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENA 670

Query: 672  RAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLYSSGIST 731
            RAEA N+ N ++QY+ PTSG P+R LIQDHI + V LT KD+F   +++ Q +Y      
Sbjct: 671  RAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYG----- 730

Query: 732  SRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGAPPFCVE 791
               C   E            S+++ + P ++KP PLWTGKQ++T +L ++T    P    
Sbjct: 731  ---CIRPEDGHTT------RSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGI-- 790

Query: 792  KDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSKRDDYSKF 851
                            N  SK K+       +   W     GKG + +E           
Sbjct: 791  ----------------NLISKNKI-------KNEYW-----GKGSLENE----------- 850

Query: 852  DKLKAERLDDDSLLIFKN-ELVRGVIDKAQFG--DYGLVHTVQELYGSNTAGVLLSVMSR 911
                         ++FK+  L+ G++DK+Q+G   YG+VH++ E+YG   A  +LSV+ R
Sbjct: 851  -------------VLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVLSVLGR 910

Query: 912  LFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVKDGEKLDPMAL 971
            LFT Y+    FTCG+DDL L    +K R   L+   + G +       +      D   L
Sbjct: 911  LFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDPEL 970

Query: 972  QLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVNNCISLMTTS 1031
               +++ + +N +  +  LD   +S++N  T  S+V+   + +G +K    N +  M  S
Sbjct: 971  LKRLQEILRDNNKSGI--LDAVTSSKVNAIT--SQVVSKCVPDGTMKKFPCNSMQAMALS 1030

Query: 1032 GAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLR 1091
            GAKG   N  QI   LGQQ LEG+RVP MVSGKTLP F P++  + AGG++  RF +G++
Sbjct: 1031 GAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIK 1090

Query: 1092 PQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDADGSIIQFRYG 1151
            PQEYYFHCMAGREGL+DTAVKTSRSGYLQRCL K LE + V YD+++RDADG+++QF YG
Sbjct: 1091 PQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYG 1150

Query: 1152 EDGVDVHKNAFIIKFEALAANCEMI---------------------------YQKSHHQP 1211
             D +D+ K + + +FE    N   +                           Y+K H + 
Sbjct: 1151 GDAIDITKESHMTQFEFCLDNYYALLKKYNPSALIEHLDVESALKYSKKTLKYRKKHSKE 1210

Query: 1212 DSFNQ---------------YINELPSVLQEKAEVIYNSFAK--DKAPGLGQKDDFIRLL 1271
              + Q               Y+  +    Q+K E   +  +K    + G+ +K  F  L+
Sbjct: 1211 PHYKQSVKYDPVLAKYNPAKYLGSVSENFQDKLESFLDKNSKLFKSSDGVNEK-KFRALM 1270

Query: 1272 ENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTAS 1331
            + KY+ SL  PGE VG++A+QS+GEPSTQMTLNTFH AG G  NVTLGIPRL+EI+MTAS
Sbjct: 1271 QLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTAS 1330

Query: 1332 QDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKR--EICSIY 1391
              IKTP MT P+    S + A      + K+ ++++I+ + VT    +           Y
Sbjct: 1331 AAIKTPQMTLPIWNDVSDEQADTFCKSISKVLLSEVIDKVIVTETTGTSNTAGGNAARSY 1390

Query: 1392 KLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISG--IKNFVPD 1451
             + +RF+      +   VS E+L+ ++   F+  LE +I  E+    R +G  I   VP 
Sbjct: 1391 VIHMRFFDNNEYSEEYDVSKEELQNVISNQFIHLLEAAIVKEIKKQKRTTGPDIGVAVPR 1450

Query: 1452 SQSKGLSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEE 1511
             Q+   + S   S+S+R E D+D+              +   +K +     D  D+ E E
Sbjct: 1451 LQTDVANSS---SNSKRLEEDNDE--------------EQSHKKTKQAVSYDEPDEDEIE 1510

Query: 1512 LNVKEPSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNK 1571
               +   +  E  +D   E+D  ++D     +D    +Q     V  +N+  K  +    
Sbjct: 1511 TMREAEKSSDEEGIDSDKESDSDSED-----EDVDMNEQINKSIVEANNNMNKVQRDRQS 1570

Query: 1572 KKKAKSEFSRK-DYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKI 1631
               +   F  K ++D     S K   F++      E  +L+  I +   +K  I+    I
Sbjct: 1571 AIISHHRFITKYNFDDE---SGKWCEFKLELAADTE-KLLMVNIVEEICRKSIIRQIPHI 1630

Query: 1632 IRCQQITCKEGQVIYHGNDTKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIY 1691
             RC                      + PE +     L T GV+F+ +W+ +  +D   I 
Sbjct: 1631 DRC----------------------VHPEPENGKRVLVTEGVNFQAMWDQEAFIDVDGIT 1660

Query: 1692 SNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLG 1694
            SND+ A+L+TYGVEAAR TI+ EI N+FS Y ISV+ RHL LIAD MT  G Y   NR  
Sbjct: 1691 SNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNR-Q 1660

BLAST of CmoCh06G000700 vs. ExPASy Swiss-Prot
Match: O35134 (DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus OX=10090 GN=Polr1a PE=1 SV=2)

HSP 1 Score: 874.4 bits (2258), Expect = 2.1e-252
Identity = 623/1841 (33.84%), Postives = 925/1841 (50.24%), Query Frame = 0

Query: 12   VKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDETTLCKSCGQRP 71
            ++ ++F   + +E++K S   +T P  +D +G P A GLYD A+G  D   +C +C Q  
Sbjct: 12   LQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQDF 71

Query: 72   FYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKCASQLELILNGD 131
              C GH GHIDL   VYNP LF  L+ LL+ +C SCH      + +    SQL ++  G 
Sbjct: 72   NNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGA 131

Query: 132  VVKAKELD---SELLTESSDSKHSNEMQNMQPKKWTSLQFSEAISAVNKFLKPKQRECKN 191
            +    EL+   S  L E+ D       + ++      LQ        N  L  +    KN
Sbjct: 132  LQAVYELERILSRFLEETGDPSAFEIQEELEEYTSKILQ--------NNLLGSQGTHVKN 191

Query: 192  CGAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGISSIEEENTVPQTTV 251
                  K+    F   HM      H        CK         G S + +E+       
Sbjct: 192  VCESRSKLV-AQFWKTHMAAKQCPH--------CK--------TGRSVVRKEH------- 251

Query: 252  INMSEVDVFDDTATKASVEDSEEV------SPEIFVPKNFSAGHLLPSEVKHILKRLWKN 311
             N   +  +  T  K S ++  E+      +P I   +    G+L PS  +  L  +WKN
Sbjct: 252  -NSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMGKRGYLTPSSAQEHLFAIWKN 311

Query: 312  EAMLCSFI-SDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQTVLLNKV 371
            E    +++ S +   G  +    SMFFL+ ++VPP ++RP  + GD +  + QTV L  V
Sbjct: 312  EGFFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRPVNRLGDQMFTNGQTVNLQAV 371

Query: 372  LQSNISLGNAHANKSEH------------------------------------SKIVRLW 431
            ++  + +    A  ++                                      K+  +W
Sbjct: 372  MKDAVLIRKLLALMAQEQKLPCEMTELTIDKENDSSVAIDRSFLGLLPGPSLTDKLYNIW 431

Query: 432  MDLQQSINVLFDSKTASGPGQKDVSVGICQLLEKKEGMFRQKMMGKRVNFACRSVISPDP 491
            + LQ  +N++FDS+      +K    GI Q+LEKKEG+FR+ MMGKRV++A RSVI PD 
Sbjct: 432  IRLQSHVNIVFDSEMDKLMLEK--YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDM 491

Query: 492  YLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYI--DKLATVKLN 551
            Y+  NEIGIP  FA +LTYP+ VT WNVQ+LR A+INGP  HPGA+  I  D   T   +
Sbjct: 492  YINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPGASMVINEDGSRTALSS 551

Query: 552  LKPSRKSRISISRKLPSSRGVVVDQGSDDYEFEGKIVNRHLEDGDIVLVNRQPTLHKPSI 611
            +  +++  ++  + L  + G    QG+       K+V RH+++GDI+L+NRQPTLH+PSI
Sbjct: 552  VDAAQREAVA-KQLLTPATGAPKPQGT-------KVVCRHVKNGDILLLNRQPTLHRPSI 611

Query: 612  MAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKP 671
             AH  R+L  EK +R+HYANC  YNADFDGDEMN HFPQ E+ RAEAY +   + QY+ P
Sbjct: 612  QAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVP 671

Query: 672  TSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLYSSGISTSRPCASSEKPGQ-KIFI 731
              G+P+  LIQDH++S   +T +  F   +++ +L+Y            ++K G+ K+F 
Sbjct: 672  KDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYR---------GLTDKVGRVKLF- 731

Query: 732  LDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGAPPFCVEKDVKIPRGFFKSRHTG 791
                       PA+ KP PLWTGKQVV+ LL +I              IP  +       
Sbjct: 732  ----------PPAILKPFPLWTGKQVVSTLLINI--------------IPEDYAPL---- 791

Query: 792  NNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSKRDDYSKFDKLKAERLDDDSLLIF 851
            N S K K+         + W  +K     +PD           FD    + + +  ++I 
Sbjct: 792  NLSGKAKIG-------SKAW--VKEKPRPIPD-----------FD---PDSMCESQVIIR 851

Query: 852  KNELVRGVIDKAQFGD--YGLVHTVQELYGSNTAGVLLSVMSRLFTVYLQMH-GFTCGVD 911
            + EL+ GV+DKA +G   YGLVH   E+YG  T+G +L+ ++RLFT YLQ++ GFT GV+
Sbjct: 852  EGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVE 911

Query: 912  DLLLIQCMDKEREKQLQICENIGEQVHLGFLKVKDGEKLDPMALQLNIEKTISNNGEPAL 971
            D+L+    D  R++ ++     G Q     L + +    D   +Q   +    +  +   
Sbjct: 912  DILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCD--EIQGKWQDAHLSKDQRDF 971

Query: 972  TSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVNNCISLMTTSGAKGGTANFQQISSHL 1031
              +D K   ++N    ++++ K  +  GL +    N + +M  SGAKG T N  QIS  L
Sbjct: 972  NMIDMKFKEEVNHY--SNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLL 1031

Query: 1032 GQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTGLRPQEYYFHCMAGREGLV 1091
            GQ +LEG+R P M SGK+LPCF P+++  RAGGF+  RFLTG+RP E++FHCMAGREGLV
Sbjct: 1032 GQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLV 1091

Query: 1092 DTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDADGSIIQFRYGEDGVDVHKNAFI--IK 1151
            DTAVKTSRSGYLQRC+IK+LE L + YD TVRD+DGS++QF YGEDG+D+ K  F+   +
Sbjct: 1092 DTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQ 1151

Query: 1152 FEALAANCEMI------------------------YQKSHHQPD----------SFNQYI 1211
            F  LA N E+I                         +K HH+            SF+Q I
Sbjct: 1152 FPFLAGNYEVIMKSKHLHEVLSRADPQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKI 1211

Query: 1212 NELPSVL--------------QEKAEVIYN-------SFAKDKAPGLGQK---------- 1271
                  L              Q+  ++ Y+        + K  AP               
Sbjct: 1212 QAAVKALNLKGSIQNGRSPETQQMLQMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYF 1271

Query: 1272 -----------DDFIR----------------------LLENKYLSSLAQPGEPVGVLAA 1331
                       DDF +                      LL+ K+  SL  PGE VG+LAA
Sbjct: 1272 ASVSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAA 1331

Query: 1332 QSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLRE-GYSMD 1391
            QSIGEPSTQMTLNTFH AGRGEMNVTLGIPRL+EILM AS +IKTP+M+ P+ +   ++ 
Sbjct: 1332 QSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVFDTKKALK 1391

Query: 1392 DAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVSSE 1451
              K L  +L ++ + ++++ +++        KR    +Y+L  +F P     Q   +  E
Sbjct: 1392 KVKSLKKRLTRVCLGEVLQKVDIQESFCMGEKRNKFQVYELRFQFLPHAYYQQEKCLRPE 1451

Query: 1452 DLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKGLSESDKVSSSQREENDDD 1511
            D+   +E  F + L ++I+ +    S    + +    +  K L++++    SQREE  D+
Sbjct: 1452 DILHFMETRFFKLLMEAIKKKKNKASAFRNVNS--RRATQKDLNDTEDSGRSQREEERDE 1511

Query: 1512 DDVGNDLDV-AEDLGFDMK--KQKLRTTDEMDYEDDSEEELNVKEPSAGFESEVDQGDEA 1571
            ++ GN +D  AE+   D    K+K +  +E+DYE + E E          E E +  +E 
Sbjct: 1512 EEEGNIVDAEAEEGDADASDTKRKEKQEEEVDYESEEEGE---------EEEEEEVQEEG 1571

Query: 1572 DITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAKSEFSRKDYDRAIFVS 1631
            +I  D     V      D+ E + + +  S  K  +  ++ + A++        R I   
Sbjct: 1572 NIKGDG----VHQGHEPDEEEHLGLEEEESSQKPPRRHSRPQGAEA------IKRRIQAV 1631

Query: 1632 AKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQ---ITCKEGQVIYHGN 1691
             +   F   +++  E  +      +    K++   S  ++       +   +G      N
Sbjct: 1632 RESYSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSLVVSLAHKAIVYTTKGITRCLLN 1691

Query: 1692 DTKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHAMLQTYGVEAARE 1694
            +T   KN    EKE V  L T G++   L++  + LD R +YSNDIHAM  TYG+EAA  
Sbjct: 1692 ETTNSKN----EKELV--LNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALR 1716

BLAST of CmoCh06G000700 vs. ExPASy TrEMBL
Match: A0A6J1FEE5 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111444963 PE=3 SV=1)

HSP 1 Score: 3370.5 bits (8738), Expect = 0.0e+00
Identity = 1695/1695 (100.00%), Postives = 1695/1695 (100.00%), Query Frame = 0

Query: 1    MAQTTEGASESVKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDE 60
            MAQTTEGASESVKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDE
Sbjct: 1    MAQTTEGASESVKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDE 60

Query: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKC 120
            TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKC
Sbjct: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKC 120

Query: 121  ASQLELILNGDVVKAKELDSELLTESSDSKHSNEMQNMQPKKWTSLQFSEAISAVNKFLK 180
            ASQLELILNGDVVKAKELDSELLTESSDSKHSNEMQNMQPKKWTSLQFSEAISAVNKFLK
Sbjct: 121  ASQLELILNGDVVKAKELDSELLTESSDSKHSNEMQNMQPKKWTSLQFSEAISAVNKFLK 180

Query: 181  PKQRECKNCGAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGISSIEEE 240
            PKQRECKNCGAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGISSIEEE
Sbjct: 181  PKQRECKNCGAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGISSIEEE 240

Query: 241  NTVPQTTVINMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFSAGHLLPSEVKHILKRLW 300
            NTVPQTTVINMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFSAGHLLPSEVKHILKRLW
Sbjct: 241  NTVPQTTVINMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFSAGHLLPSEVKHILKRLW 300

Query: 301  KNEAMLCSFISDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQTVLLNK 360
            KNEAMLCSFISDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQTVLLNK
Sbjct: 301  KNEAMLCSFISDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQTVLLNK 360

Query: 361  VLQSNISLGNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVSVGICQLLEKK 420
            VLQSNISLGNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVSVGICQLLEKK
Sbjct: 361  VLQSNISLGNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVSVGICQLLEKK 420

Query: 421  EGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAI 480
            EGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAI
Sbjct: 421  EGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAI 480

Query: 481  INGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEFEGKIV 540
            INGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEFEGKIV
Sbjct: 481  INGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEFEGKIV 540

Query: 541  NRHLEDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHF 600
            NRHLEDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHF
Sbjct: 541  NRHLEDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHF 600

Query: 601  PQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLY 660
            PQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLY
Sbjct: 601  PQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLY 660

Query: 661  SSGISTSRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGA 720
            SSGISTSRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGA
Sbjct: 661  SSGISTSRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGA 720

Query: 721  PPFCVEKDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSKR 780
            PPFCVEKDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSKR
Sbjct: 721  PPFCVEKDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSKR 780

Query: 781  DDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGVLLSV 840
            DDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGVLLSV
Sbjct: 781  DDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGVLLSV 840

Query: 841  MSRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVKDGEKLDP 900
            MSRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVKDGEKLDP
Sbjct: 841  MSRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVKDGEKLDP 900

Query: 901  MALQLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVNNCISLM 960
            MALQLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVNNCISLM
Sbjct: 901  MALQLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVNNCISLM 960

Query: 961  TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLT 1020
            TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLT
Sbjct: 961  TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLT 1020

Query: 1021 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDADGSIIQF 1080
            GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDADGSIIQF
Sbjct: 1021 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDADGSIIQF 1080

Query: 1081 RYGEDGVDVHKNAFIIKFEALAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNS 1140
            RYGEDGVDVHKNAFIIKFEALAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNS
Sbjct: 1081 RYGEDGVDVHKNAFIIKFEALAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNS 1140

Query: 1141 FAKDKAPGLGQKDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRG 1200
            FAKDKAPGLGQKDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRG
Sbjct: 1141 FAKDKAPGLGQKDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRG 1200

Query: 1201 EMNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESME 1260
            EMNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESME
Sbjct: 1201 EMNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESME 1260

Query: 1261 VTVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEM 1320
            VTVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEM
Sbjct: 1261 VTVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEM 1320

Query: 1321 LLLSRISGIKNFVPDSQSKGLSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKL 1380
            LLLSRISGIKNFVPDSQSKGLSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKL
Sbjct: 1321 LLLSRISGIKNFVPDSQSKGLSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKL 1380

Query: 1381 RTTDEMDYEDDSEEELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDV 1440
            RTTDEMDYEDDSEEELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDV
Sbjct: 1381 RTTDEMDYEDDSEEELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDV 1440

Query: 1441 SKSNSKGKTTKTSNKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQ 1500
            SKSNSKGKTTKTSNKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQ
Sbjct: 1441 SKSNSKGKTTKTSNKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQ 1500

Query: 1501 RTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNDTKVRKNIKPEEKEKVPALQTTGVDFKT 1560
            RTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNDTKVRKNIKPEEKEKVPALQTTGVDFKT
Sbjct: 1501 RTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNDTKVRKNIKPEEKEKVPALQTTGVDFKT 1560

Query: 1561 LWELQDELDARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADY 1620
            LWELQDELDARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADY
Sbjct: 1561 LWELQDELDARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADY 1620

Query: 1621 MTHSGGYRPMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPV 1680
            MTHSGGYRPMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPV
Sbjct: 1621 MTHSGGYRPMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPV 1680

Query: 1681 KMGTGSFDLMQKIDV 1696
            KMGTGSFDLMQKIDV
Sbjct: 1681 KMGTGSFDLMQKIDV 1695

BLAST of CmoCh06G000700 vs. ExPASy TrEMBL
Match: A0A6J1I5C4 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470054 PE=3 SV=1)

HSP 1 Score: 3352.0 bits (8690), Expect = 0.0e+00
Identity = 1687/1695 (99.53%), Postives = 1689/1695 (99.65%), Query Frame = 0

Query: 1    MAQTTEGASESVKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDE 60
            MAQTTEGASESVKAVAFSFMTEDEVRK SAVKVTAPILLDAMGRPVAGGLYDPAMGSLDE
Sbjct: 1    MAQTTEGASESVKAVAFSFMTEDEVRKLSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDE 60

Query: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKC 120
            TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKC
Sbjct: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKC 120

Query: 121  ASQLELILNGDVVKAKELDSELLTESSDSKHSNEMQNMQPKKWTSLQFSEAISAVNKFLK 180
            ASQLELILNGDVVKAKELDSELLTESSDSKHSNEMQNMQPKKWTSLQFSEAISAVNKFLK
Sbjct: 121  ASQLELILNGDVVKAKELDSELLTESSDSKHSNEMQNMQPKKWTSLQFSEAISAVNKFLK 180

Query: 181  PKQRECKNCGAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGISSIEEE 240
            PKQRECKNCGAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGISSIEEE
Sbjct: 181  PKQRECKNCGAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGISSIEEE 240

Query: 241  NTVPQTTVINMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFSAGHLLPSEVKHILKRLW 300
            NTVPQTTVINMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFS  HLLPSEVKHILKRLW
Sbjct: 241  NTVPQTTVINMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFSTVHLLPSEVKHILKRLW 300

Query: 301  KNEAMLCSFISDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQTVLLNK 360
            KNEAMLCSFISDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQTVLLNK
Sbjct: 301  KNEAMLCSFISDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQTVLLNK 360

Query: 361  VLQSNISLGNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVSVGICQLLEKK 420
            VLQSNISLGNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVSVGICQLLEKK
Sbjct: 361  VLQSNISLGNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVSVGICQLLEKK 420

Query: 421  EGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAI 480
            EGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAI
Sbjct: 421  EGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAI 480

Query: 481  INGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEFEGKIV 540
            INGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEFEGKIV
Sbjct: 481  INGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEFEGKIV 540

Query: 541  NRHLEDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHF 600
            NRHLEDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHF
Sbjct: 541  NRHLEDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHF 600

Query: 601  PQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLY 660
            PQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLY
Sbjct: 601  PQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLY 660

Query: 661  SSGISTSRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGA 720
            SSGISTSRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGA
Sbjct: 661  SSGISTSRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGA 720

Query: 721  PPFCVEKDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSKR 780
            PPFCVEKDVKIPRGFFK RHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSK+
Sbjct: 721  PPFCVEKDVKIPRGFFKCRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSKK 780

Query: 781  DDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGVLLSV 840
            DDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGVLLSV
Sbjct: 781  DDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGVLLSV 840

Query: 841  MSRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVKDGEKLDP 900
            MSRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVKDGEKLDP
Sbjct: 841  MSRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVKDGEKLDP 900

Query: 901  MALQLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVNNCISLM 960
            MALQLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVNNCISLM
Sbjct: 901  MALQLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVNNCISLM 960

Query: 961  TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLT 1020
            TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLT
Sbjct: 961  TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLT 1020

Query: 1021 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDADGSIIQF 1080
            GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDADGSIIQF
Sbjct: 1021 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDADGSIIQF 1080

Query: 1081 RYGEDGVDVHKNAFIIKFEALAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNS 1140
            RYGEDGVDVHKNAFIIKFEALAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNS
Sbjct: 1081 RYGEDGVDVHKNAFIIKFEALAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNS 1140

Query: 1141 FAKDKAPGLGQKDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRG 1200
            FAKDKAPGLGQKDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRG
Sbjct: 1141 FAKDKAPGLGQKDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRG 1200

Query: 1201 EMNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESME 1260
            EMNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESME
Sbjct: 1201 EMNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESME 1260

Query: 1261 VTVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEM 1320
            VTVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEM
Sbjct: 1261 VTVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEM 1320

Query: 1321 LLLSRISGIKNFVPDSQSKGLSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKL 1380
            LLLSRISGIKNFVPDSQSKGLSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKL
Sbjct: 1321 LLLSRISGIKNFVPDSQSKGLSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKL 1380

Query: 1381 RTTDEMDYEDDSEEELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDV 1440
            RTTDEMDYEDDSEEELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDATSEDQT IIDV
Sbjct: 1381 RTTDEMDYEDDSEEELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTVIIDV 1440

Query: 1441 SKSNSKGKTTKTSNKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQ 1500
            SKSNSKGKTTKTSNKKKKAKSEFSRKDYDRAIFV+AKGNHFEVHFKFTNEPHILLTQIAQ
Sbjct: 1441 SKSNSKGKTTKTSNKKKKAKSEFSRKDYDRAIFVAAKGNHFEVHFKFTNEPHILLTQIAQ 1500

Query: 1501 RTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNDTKVRKNIKPEEKEKVPALQTTGVDFKT 1560
            RTAQKVSIQSSGKIIRCQQITCKEGQVIYHGND KVRKNIKPEEKEKVPALQTTGVDFKT
Sbjct: 1501 RTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNDIKVRKNIKPEEKEKVPALQTTGVDFKT 1560

Query: 1561 LWELQDELDARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADY 1620
            LWELQDELDARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADY
Sbjct: 1561 LWELQDELDARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADY 1620

Query: 1621 MTHSGGYRPMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPV 1680
            MTHSGGYRPMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPV
Sbjct: 1621 MTHSGGYRPMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPV 1680

Query: 1681 KMGTGSFDLMQKIDV 1696
            KMGTGSFDLMQKIDV
Sbjct: 1681 KMGTGSFDLMQKIDV 1695

BLAST of CmoCh06G000700 vs. ExPASy TrEMBL
Match: A0A6J1DJ24 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111021540 PE=3 SV=1)

HSP 1 Score: 3061.6 bits (7936), Expect = 0.0e+00
Identity = 1521/1696 (89.68%), Postives = 1608/1696 (94.81%), Query Frame = 0

Query: 1    MAQTTEGASESVKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDE 60
            MAQTTEGASESV+AVAFSFMT++EVRKHSAVKVTAPILLD MGRPV+GGLYDPAMGSLD+
Sbjct: 1    MAQTTEGASESVEAVAFSFMTDEEVRKHSAVKVTAPILLDGMGRPVSGGLYDPAMGSLDD 60

Query: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKC 120
            TTLCKSCGQRP YCPGHCGHIDLVSPVYNPLLF+ILHN+LQRTCFSCHHFRAG SQVEKC
Sbjct: 61   TTLCKSCGQRPLYCPGHCGHIDLVSPVYNPLLFVILHNILQRTCFSCHHFRAGESQVEKC 120

Query: 121  ASQLELILNGDVVKAKELDSELLTESSDSKHSNEMQNMQPKKWTSLQFSEAISAVNKFLK 180
             SQL+LI NGDVV+AKELDSE L+E S SK+SN  QNMQP KWTSLQFSEAIS VNKFLK
Sbjct: 121  VSQLDLISNGDVVEAKELDSEWLSEPSHSKYSNGRQNMQPGKWTSLQFSEAISVVNKFLK 180

Query: 181  PKQRECKNCGAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGISSIEEE 240
            PKQRECKNCGAKNPKI+RPTFGWL+M+GLPGAHKRANAIRGCKP SV SGAEGISS+EEE
Sbjct: 181  PKQRECKNCGAKNPKISRPTFGWLNMSGLPGAHKRANAIRGCKPVSVISGAEGISSLEEE 240

Query: 241  NTVPQTTVINMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFSAGHLLPSEVKHILKRLW 300
             T   TTVIN SE D FDDTATKA  EDSEEV PE+F+ KNFS+GHL+PSEVK I+++LW
Sbjct: 241  TTFSHTTVINTSEGDAFDDTATKAPTEDSEEVPPEVFMQKNFSSGHLMPSEVKVIMRQLW 300

Query: 301  KNEAMLCSFISDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQTVLLNK 360
            KNEA LCSFISDIQHQG+G KAGHSMFFLE VL+PPIKFRPPAKGGDS+MEHPQTVLLNK
Sbjct: 301  KNEATLCSFISDIQHQGHGKKAGHSMFFLENVLIPPIKFRPPAKGGDSVMEHPQTVLLNK 360

Query: 361  VLQSNISLGNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVSVGICQLLEKK 420
            VLQSNISLGNAHANKSEHSKIVRLWMDLQQS+NVLFDSKTA+  GQKD+SVGICQLLEKK
Sbjct: 361  VLQSNISLGNAHANKSEHSKIVRLWMDLQQSVNVLFDSKTAA--GQKDISVGICQLLEKK 420

Query: 421  EGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAI 480
            EGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRL+YPERVTAWNVQKLRNAI
Sbjct: 421  EGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLSYPERVTAWNVQKLRNAI 480

Query: 481  INGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEFEGKIV 540
            INGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGS DYEFEGKIV
Sbjct: 481  INGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSGDYEFEGKIV 540

Query: 541  NRHLEDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHF 600
            NRHL+DGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHF
Sbjct: 541  NRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHF 600

Query: 601  PQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLY 660
            PQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFL FDEFSQLLY
Sbjct: 601  PQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLY 660

Query: 661  SSGISTSRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGA 720
            SSGISTSRPCASSEKPGQK+F LDFE+EMLPVLPA+WKPEPLWTGKQVVTALL+HITRG+
Sbjct: 661  SSGISTSRPCASSEKPGQKVFTLDFEAEMLPVLPAIWKPEPLWTGKQVVTALLEHITRGS 720

Query: 721  PPFCVEKDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSKR 780
            PPFCVEKDVKIPRGFFK RHTGNNSSKVKV DGDKSKRKRTWN  +LGK EVPDEGNSK+
Sbjct: 721  PPFCVEKDVKIPRGFFKCRHTGNNSSKVKVVDGDKSKRKRTWNENRLGKSEVPDEGNSKK 780

Query: 781  DDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGVLLSV 840
             +YSK DKLKAE LDDDSLLIFKNELVRGVIDKAQFGDYGLVHTV ELYGSNTAG+LLSV
Sbjct: 781  KEYSKLDKLKAEHLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVHELYGSNTAGLLLSV 840

Query: 841  MSRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVKDGEKLDP 900
            MSRLFTV+LQMHGFTCGVDDLLL++CMDKERE+QLQICE IGEQVHLGFLKVKDGEKLDP
Sbjct: 841  MSRLFTVFLQMHGFTCGVDDLLLLECMDKEREEQLQICEKIGEQVHLGFLKVKDGEKLDP 900

Query: 901  MALQLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVNNCISLM 960
            M LQLNIEKTI +NGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSV NCISLM
Sbjct: 901  MTLQLNIEKTICDNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLM 960

Query: 961  TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLT 1020
            TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFP WDWASRAGGFIVDRFLT
Sbjct: 961  TTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPSWDWASRAGGFIVDRFLT 1020

Query: 1021 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDADGSIIQF 1080
            GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKN+ESLK+ YDHTVRDADGSIIQF
Sbjct: 1021 GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNMESLKICYDHTVRDADGSIIQF 1080

Query: 1081 RYGEDGVDVHKNAFIIKFEALAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNS 1140
            +YGEDG+DVHK AFI KFEAL AN +M+YQKSHHQ   +N YINELPS LQEKAEVIYNS
Sbjct: 1081 QYGEDGIDVHKTAFITKFEALVANRDMLYQKSHHQLGKYNIYINELPSALQEKAEVIYNS 1140

Query: 1141 FAKDKAPGLGQKDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRG 1200
            F+KDKAPGL QKDDF RLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRG
Sbjct: 1141 FSKDKAPGLVQKDDFFRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRG 1200

Query: 1201 EMNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESME 1260
            EMNVTLGIPRLQEILMTAS DIKTPIMTCPLR+GYSMD AKCLANKLKKITVADIIESME
Sbjct: 1201 EMNVTLGIPRLQEILMTASHDIKTPIMTCPLRDGYSMDYAKCLANKLKKITVADIIESME 1260

Query: 1261 VTVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEM 1320
            VTVVPFS RKREICSIYKLEI+FYPLE+NPQH HVSSEDLEEILEFVFVRELEDSIQNEM
Sbjct: 1261 VTVVPFSVRKREICSIYKLEIKFYPLENNPQHGHVSSEDLEEILEFVFVRELEDSIQNEM 1320

Query: 1321 LLLSRISGIKNFVPDSQSKGLSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKL 1380
            +LLSRI+GIKNFVPDSQS+G SE D+VSSSQ EENDDDD+VGND+D AEDLGFDMKKQKL
Sbjct: 1321 ILLSRINGIKNFVPDSQSQGSSERDEVSSSQHEENDDDDNVGNDVDAAEDLGFDMKKQKL 1380

Query: 1381 RTTDEMDYEDDSEEELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDV 1440
            R TDEMDYEDDS+EELN K PSAGFESEVDQGDE +ITNDD M+I KD+TSE+QTEI DV
Sbjct: 1381 RATDEMDYEDDSDEELNAKAPSAGFESEVDQGDEVEITNDDIMDIAKDSTSENQTEITDV 1440

Query: 1441 SKSNSKGKTTKTSNKKKK-AKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIA 1500
            SKSN KGKT KT+NKKKK AK EFSRKDYDRAIFV+AKGNHFEVHFKF NEPHILLTQ+A
Sbjct: 1441 SKSNLKGKTPKTANKKKKRAKLEFSRKDYDRAIFVAAKGNHFEVHFKFANEPHILLTQVA 1500

Query: 1501 QRTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNDTKVRKNIKPEEKEKVPALQTTGVDFK 1560
            Q+TAQKVSIQSSGKIIRCQQITCKEGQVIYHGN+ K RK +K EEKEK+PA+QTTGVDF+
Sbjct: 1501 QKTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNNVKERKKMKLEEKEKIPAVQTTGVDFR 1560

Query: 1561 TLWELQDELDARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIAD 1620
             LWELQDELD RYIYSNDIHAML+TYGVEAARET++REI+NIFSSYGISVNIRHLTL+AD
Sbjct: 1561 MLWELQDELDVRYIYSNDIHAMLETYGVEAARETVMREIQNIFSSYGISVNIRHLTLVAD 1620

Query: 1621 YMTHSGGYRPMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLP 1680
            YMTHSGGYRPM+RLGGIA+SISPFSRMTFETA++FIVQAA+HGE+D LETPSARICLGLP
Sbjct: 1621 YMTHSGGYRPMSRLGGIAESISPFSRMTFETASKFIVQAAFHGEIDNLETPSARICLGLP 1680

Query: 1681 VKMGTGSFDLMQKIDV 1696
             KMGTGSFDLMQKI+V
Sbjct: 1681 AKMGTGSFDLMQKIEV 1694

BLAST of CmoCh06G000700 vs. ExPASy TrEMBL
Match: A0A5A7TQ71 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00270 PE=3 SV=1)

HSP 1 Score: 2885.9 bits (7480), Expect = 0.0e+00
Identity = 1450/1695 (85.55%), Postives = 1550/1695 (91.45%), Query Frame = 0

Query: 7    GASESVKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDETTLCKS 66
            GASESVK V FSFMT  EVRKHSAVKVTAPILLD MGRPV+GGLYDPAMGSLDETTLCKS
Sbjct: 95   GASESVKVVTFSFMTNAEVRKHSAVKVTAPILLDGMGRPVSGGLYDPAMGSLDETTLCKS 154

Query: 67   CGQRPFYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKCASQLEL 126
            CGQRPFYCPGHCGHIDLVSPVYNPLLF+ LHN L+ TCFSCHHFRAG   VEKC + LEL
Sbjct: 155  CGQRPFYCPGHCGHIDLVSPVYNPLLFVTLHNFLRCTCFSCHHFRAGEFMVEKCKTLLEL 214

Query: 127  ILNGDVVKAKELDSELL-----TESSDSKHSNEMQNMQPKKWTSLQFSEAISAVNKFLKP 186
            IL+G+V KAKEL+ E L     T+SS + ++ E +N+QPK WTSLQFSEA+S VN+FLKP
Sbjct: 215  ILDGEVAKAKELEDEWLDSTSRTKSSHAMYTYERKNVQPKTWTSLQFSEAMSVVNRFLKP 274

Query: 187  KQRECKNCGAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGISSIEEEN 246
            KQ  CK CGAKNPKIT+PTFGWLH  GL GAHKRANAIR  KP SVSSGAEG+SS+EEE 
Sbjct: 275  KQSNCKYCGAKNPKITKPTFGWLHSKGLTGAHKRANAIRRSKPVSVSSGAEGVSSLEEE- 334

Query: 247  TVPQTTVINMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFSAGHLLPSEVKHILKRLWK 306
                              T T+A+VEDSE+VSPEIF+ KNFS+GHLLPSEVK ILKRLWK
Sbjct: 335  ------------------TTTEATVEDSEDVSPEIFMQKNFSSGHLLPSEVKDILKRLWK 394

Query: 307  NEAMLCSFISDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQTVLLNKV 366
            NEA+LCSFISDI  QG GNKAGHSMFFLE+VLVPPIKFRPPAKGGDSIMEHPQTVLLNKV
Sbjct: 395  NEALLCSFISDISQQGNGNKAGHSMFFLESVLVPPIKFRPPAKGGDSIMEHPQTVLLNKV 454

Query: 367  LQSNISLGNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVSVGICQLLEKKE 426
            LQSNISLGN HANK EHS+IVRLWMDLQQSIN+LFDSKTA+GPG+KD S+GICQLLEKKE
Sbjct: 455  LQSNISLGNGHANKLEHSRIVRLWMDLQQSINILFDSKTAAGPGKKDASLGICQLLEKKE 514

Query: 427  GMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAII 486
            GMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAII
Sbjct: 515  GMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAII 574

Query: 487  NGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEFEGKIVN 546
            NGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQG DDYEFEGKIVN
Sbjct: 575  NGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEFEGKIVN 634

Query: 547  RHLEDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFP 606
            RHL+DGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFP
Sbjct: 635  RHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFP 694

Query: 607  QDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLYS 666
            QDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFL FDEFSQLLYS
Sbjct: 695  QDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEFSQLLYS 754

Query: 667  SGISTSRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGAP 726
            SGISTS+ CASSEKPGQKIF LDF++EMLPVLPAVWKPEPLWTGKQVVTALLDHIT+G+P
Sbjct: 755  SGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDHITQGSP 814

Query: 727  PFCVEKDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSKRD 786
            PFCVEKDVKIPRGFFK R  GNNSSKVK+ DGDKSKRKRT N  KL KGEV DEGNSK+ 
Sbjct: 815  PFCVEKDVKIPRGFFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDEGNSKKK 874

Query: 787  DYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAGVLLSVM 846
            +Y+K DKLKA RLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGS+TAG+LLSVM
Sbjct: 875  EYAKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSSTAGLLLSVM 934

Query: 847  SRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVKDGEKLDPM 906
            SRLFTV+LQ HGFTCGVDDLLLI+CMDKEREKQLQICE IGEQVHL FLKVKDGEKLDPM
Sbjct: 935  SRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLEFLKVKDGEKLDPM 994

Query: 907  ALQLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVNNCISLMT 966
             LQLNIEKTISNNGE ALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSV NCISLMT
Sbjct: 995  TLQLNIEKTISNNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKNCISLMT 1054

Query: 967  TSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTG 1026
            TSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTG
Sbjct: 1055 TSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVDRFLTG 1114

Query: 1027 LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDADGSIIQFR 1086
            LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLE+LK+ YDHTVRDADGS+IQF+
Sbjct: 1115 LRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLEALKICYDHTVRDADGSVIQFQ 1174

Query: 1087 YGEDGVDVHKNAFIIKFEALAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAEVIYNSF 1146
            YGEDGVDVHK AFI KFEALAAN +M+YQKSHHQ   +N +INELPS L+EKAE IYNS 
Sbjct: 1175 YGEDGVDVHKTAFITKFEALAANQDMLYQKSHHQLGKYNVFINELPSALREKAEFIYNSL 1234

Query: 1147 AKDKAPGLGQKDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGE 1206
            +KDK PGL  K+DFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGE
Sbjct: 1235 SKDKVPGLVVKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGE 1294

Query: 1207 MNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEV 1266
            MNVTLGIPRLQEILMTASQDIKTPIMTCPL+EGYSMD AK LANKLKKITVADIIESM V
Sbjct: 1295 MNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADIIESMNV 1354

Query: 1267 TVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEML 1326
            TVVPFSQRK EICSIYKL I FYPL++N QH H+S EDLE  LE VF+ ELE  I+ EM+
Sbjct: 1355 TVVPFSQRKLEICSIYKLRIDFYPLDNNAQHGHISPEDLENTLEIVFLEELEALIEREMV 1414

Query: 1327 LLSRISGIKNFVPDSQSKGLSESDKVSSSQREE-NDDDDDVGNDLDVAEDLGFDMKKQKL 1386
            LLS+I+GIKNFVPDSQSK  SE D+VS SQ+EE +DDDDD+GNDLDVAEDLG DMKKQKL
Sbjct: 1415 LLSKINGIKNFVPDSQSKVSSEGDEVSGSQQEEKDDDDDDLGNDLDVAEDLGSDMKKQKL 1474

Query: 1387 RTTDEMDYEDDSEEELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDV 1446
            + TDEMDYEDDSE++LN KEPS GFESEVDQGDEA+ITN++ +EIVKD+ SE++ EI+D+
Sbjct: 1475 QATDEMDYEDDSEDDLNAKEPSTGFESEVDQGDEAEITNNE-IEIVKDSASENEPEIVDI 1534

Query: 1447 SKSNSKGKTTKTSNKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQ 1506
            SKS SK KTT+TS KKKK KSEF+RKD DR+IF  AK NHFEVHFKFTNEPHILL+QIAQ
Sbjct: 1535 SKSESKEKTTETSEKKKKVKSEFNRKDTDRSIFAEAKENHFEVHFKFTNEPHILLSQIAQ 1594

Query: 1507 RTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNDTKVRKNIKPEEKEKVPALQTTGVDFKT 1566
            R AQKVSIQ SGKII+CQQITCKEGQVIYHGN+ K RKN+KPEEKEK+PALQT+GVDFKT
Sbjct: 1595 RAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSGVDFKT 1654

Query: 1567 LWELQDELDARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADY 1626
            LWE+QDELD RYIYSNDIHAMLQTYGVEAAR TIIREI+NIF+SYGISVNIRHL+L+ADY
Sbjct: 1655 LWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLSLVADY 1714

Query: 1627 MTHSGGYRPMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPV 1686
            MTHSGGYRPM+RLGGI+DSISPFSRMTFETA +FIVQAA HGEVD LETPS+RICLGLPV
Sbjct: 1715 MTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRICLGLPV 1769

Query: 1687 KMGTGSFDLMQKIDV 1696
            KMGTGSFDLMQ+I+V
Sbjct: 1775 KMGTGSFDLMQQIEV 1769

BLAST of CmoCh06G000700 vs. ExPASy TrEMBL
Match: A0A0A0LF53 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G811600 PE=3 SV=1)

HSP 1 Score: 2884.4 bits (7476), Expect = 0.0e+00
Identity = 1447/1700 (85.12%), Postives = 1546/1700 (90.94%), Query Frame = 0

Query: 1    MAQTTEGASESVKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDE 60
            MAQTTEGASESVK V FSFMT +EVRK S VKVTAPILLD MGRPV+GGLYDPAMGSLDE
Sbjct: 1    MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSLDE 60

Query: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKC 120
            TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLF+ILHN L+ TCFSCHHFRAG S VE C
Sbjct: 61   TTLCKSCGQRPFYCPGHCGHIDLVSPVYNPLLFVILHNFLRCTCFSCHHFRAGESMVENC 120

Query: 121  ASQLELILNGDVVKAKELDSELL-----TESSDSKHSNEMQNMQPKKWTSLQFSEAISAV 180
             + LELIL+G++ KAKEL+ E +     T+SS S ++ E +N QP+ WTSLQFSEAIS V
Sbjct: 121  KTLLELILDGEIAKAKELEEEWMNSKSRTKSSHSMYTYERKNGQPETWTSLQFSEAISVV 180

Query: 181  NKFLKPKQRECKNCGAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGIS 240
             KFLKPKQ  CK CGAK+PKIT+PTFGW HM GL G  KRANAIR  KP SVSSGAEG+S
Sbjct: 181  TKFLKPKQSNCKYCGAKSPKITKPTFGWFHMKGLAGVQKRANAIRRSKPVSVSSGAEGVS 240

Query: 241  SIEEENTVPQTTVINMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFSAGHLLPSEVKHI 300
            S+EEE                   T T+A+VED E+VSPE+F+ KNFS+GHLLPSEVK I
Sbjct: 241  SLEEE-------------------TTTEATVEDFEDVSPEVFMQKNFSSGHLLPSEVKDI 300

Query: 301  LKRLWKNEAMLCSFISDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQT 360
            LKRLWKNEA+LCSFISDI  QG+GNKAGHSMFFLE+VLVPPIKFRPPAKGGDS+MEHPQT
Sbjct: 301  LKRLWKNEALLCSFISDISQQGHGNKAGHSMFFLESVLVPPIKFRPPAKGGDSVMEHPQT 360

Query: 361  VLLNKVLQSNISLGNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVSVGICQ 420
            VLLNKVLQSNISLGN HANKSEHSKIVRLWMDLQQSIN+LFDSK+A+GPG+ D S+GICQ
Sbjct: 361  VLLNKVLQSNISLGNGHANKSEHSKIVRLWMDLQQSINILFDSKSAAGPGKNDASLGICQ 420

Query: 421  LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQK 480
            LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQK
Sbjct: 421  LLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQK 480

Query: 481  LRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEF 540
            LRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQG DDYEF
Sbjct: 481  LRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGCDDYEF 540

Query: 541  EGKIVNRHLEDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 600
            EGKIVNRHL+DGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE
Sbjct: 541  EGKIVNRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDE 600

Query: 601  MNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEF 660
            MNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFL FDEF
Sbjct: 601  MNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLNFDEF 660

Query: 661  SQLLYSSGISTSRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDH 720
            SQLLYSSGISTS+ CASSEKPGQKIF LDF++EMLPVLPAVWKPEPLWTGKQVVTALLDH
Sbjct: 661  SQLLYSSGISTSKACASSEKPGQKIFTLDFDAEMLPVLPAVWKPEPLWTGKQVVTALLDH 720

Query: 721  ITRGAPPFCVEKDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDE 780
            IT+G+PPF VEKDVKIPRGFFK R  GNNSSKVK+ DGDKSKRKRT N  KL KGEV DE
Sbjct: 721  ITQGSPPFFVEKDVKIPRGFFKCRDMGNNSSKVKMVDGDKSKRKRTMNENKLEKGEVLDE 780

Query: 781  GNSKRDDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAG 840
            GNSK+ +++K DKLKA RLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAG
Sbjct: 781  GNSKKKEHTKVDKLKAARLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNTAG 840

Query: 841  VLLSVMSRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVKDG 900
            +LLSVMSRLFTV+LQ HGFTCGVDDLLLI+CMDKEREKQLQICE IGEQVHLGFLKVKDG
Sbjct: 841  LLLSVMSRLFTVFLQTHGFTCGVDDLLLIECMDKEREKQLQICEKIGEQVHLGFLKVKDG 900

Query: 901  EKLDPMALQLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVNN 960
            EKLDPM LQLNIEKTIS NGE ALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSV N
Sbjct: 901  EKLDPMTLQLNIEKTISYNGEAALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVKN 960

Query: 961  CISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIV 1020
            CISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIV
Sbjct: 961  CISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIV 1020

Query: 1021 DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDADG 1080
            DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLK+ YDHTVRDADG
Sbjct: 1021 DRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKICYDHTVRDADG 1080

Query: 1081 SIIQFRYGEDGVDVHKNAFIIKFEALAANCEMIYQKSHHQPDSFNQYINELPSVLQEKAE 1140
            S+IQF+YGEDGVDVHK AFI KFEALAAN +M+Y+ SHHQ   +N +INELPS L+EK E
Sbjct: 1081 SVIQFQYGEDGVDVHKTAFITKFEALAANQDMLYENSHHQLGKYNVFINELPSALREKGE 1140

Query: 1141 VIYNSFAKDKAPGLGQKDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFH 1200
             IYNS +KDK PGL  K+DFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFH
Sbjct: 1141 FIYNSLSKDKVPGLVLKEDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFH 1200

Query: 1201 HAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADI 1260
            HAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPL+EGYSMD AK LANKLKKITVADI
Sbjct: 1201 HAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLKEGYSMDVAKGLANKLKKITVADI 1260

Query: 1261 IESMEVTVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDS 1320
            IESM VTVVPFSQRKREICSIYKL I FYPLE+N QH H+S EDLE  LE VF+ ELE  
Sbjct: 1261 IESMNVTVVPFSQRKREICSIYKLRIDFYPLENNAQHGHISPEDLENTLETVFLEELEGL 1320

Query: 1321 IQNEMLLLSRISGIKNFVPDSQSKGLSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDM 1380
            I+ EM+LLS+I+GIKNFVPDSQSKG SE D+VSSS++EENDDDDD GNDLDVAEDLG DM
Sbjct: 1321 IEREMVLLSKINGIKNFVPDSQSKGSSEGDEVSSSRQEENDDDDDEGNDLDVAEDLGSDM 1380

Query: 1381 KKQKLRTTDEMDYEDDSEEELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDATSEDQT 1440
            KKQKL+  DEMDYEDDSE++LN KE S GFESEVDQGDEA+ITN+D +EIVKD+ SE+Q 
Sbjct: 1381 KKQKLQANDEMDYEDDSEDDLNAKESSTGFESEVDQGDEAEITNNDMIEIVKDSASENQP 1440

Query: 1441 EIIDVSKSNSKGKTTKTSNKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILL 1500
            EI+DVSKS SK KTT+TS +KKK KSE  RK+ DR+IFV AK NHFEVHFKFTNEPH LL
Sbjct: 1441 EIVDVSKSMSKEKTTETSKEKKKVKSELVRKETDRSIFVEAKENHFEVHFKFTNEPHTLL 1500

Query: 1501 TQIAQRTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNDTKVRKNIKPEEKEKVPALQTTG 1560
            +QI QR AQKVSIQ SGKII+CQQITCKEGQVIYHGN+ K RKN+KPEEKEK+PALQT+G
Sbjct: 1501 SQIVQRAAQKVSIQRSGKIIQCQQITCKEGQVIYHGNNLKERKNLKPEEKEKIPALQTSG 1560

Query: 1561 VDFKTLWELQDELDARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLT 1620
            VDFKTLWE+QDELD RYIYSNDIHAMLQTYGVEAAR TIIREI+NIF+SYGISVNIRHL+
Sbjct: 1561 VDFKTLWEMQDELDVRYIYSNDIHAMLQTYGVEAARATIIREIQNIFTSYGISVNIRHLS 1620

Query: 1621 LIADYMTHSGGYRPMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARIC 1680
            L+ADYMTHSGGYRPM+RLGGI+DSISPFSRMTFETA +FIVQAA HGEVD LETPS+RIC
Sbjct: 1621 LVADYMTHSGGYRPMSRLGGISDSISPFSRMTFETAGKFIVQAALHGEVDNLETPSSRIC 1680

Query: 1681 LGLPVKMGTGSFDLMQKIDV 1696
            LGLPVKMGTGSFDLMQKI+V
Sbjct: 1681 LGLPVKMGTGSFDLMQKIEV 1681

BLAST of CmoCh06G000700 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 1859.0 bits (4814), Expect = 0.0e+00
Identity = 987/1707 (57.82%), Postives = 1229/1707 (72.00%), Query Frame = 0

Query: 7    GASESVKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDETTLCKS 66
            GAS+ V++V FSFMTE +VRKHS +KVT+PIL D +G P  GGLYD  +G  D+   C S
Sbjct: 22   GASQVVESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNS 81

Query: 67   CGQRPFYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKCASQLEL 126
            CGQ    CPGHCGHI+LV P+Y+PLLF +L N LQR CF CHHF A    VE+  SQL+L
Sbjct: 82   CGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKL 141

Query: 127  ILNGDVVKAKELDSELLTES------------SDSKHSNEMQNMQPKKWTSLQFSEAISA 186
            I+ GD+V AK+L+S   T+S            +DS    E  +++ ++WTSLQF+E  + 
Sbjct: 142  IIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTSLQFAEVTAV 201

Query: 187  VNKFLKPKQRECKNCGAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGI 246
            +  F++   + C  C   NPK+ +P FGW+ M  +  +   AN IRG K        +  
Sbjct: 202  LKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKL------KKST 261

Query: 247  SSIEEENTVPQTTVINMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFSAGHLLPSEVKH 306
            SS+E  +    + +  +SEV+  D    K + E S EV+ E    ++ S   LLPSEV++
Sbjct: 262  SSVENPDGFDDSGIDALSEVEDGD----KETREKSTEVAAEF--EEHNSKRDLLPSEVRN 321

Query: 307  ILKRLWKNEAMLCSFISDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAKGGDSIMEHPQ 366
            ILK LW+NE   CSFI D+   G   K  +SMFFLE+VLVPP KFRPP  GGDS+MEHPQ
Sbjct: 322  ILKHLWQNEHEFCSFIGDLWQSG-SEKIDYSMFFLESVLVPPTKFRPPTTGGDSVMEHPQ 381

Query: 367  TVLLNKVLQSNISLGNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVSVGIC 426
            TV LNKV++SN  LGNA  NK + SK++  W +LQ+S+NVLFDSKTA+   Q+D S GIC
Sbjct: 382  TVGLNKVIESNNILGNACTNKLDQSKVIFRWRNLQESVNVLFDSKTATVQSQRD-SSGIC 441

Query: 427  QLLEKKEGMFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQ 486
            QLLEKKEG+FRQKMMGKRVN ACRSVISPDPY+AVN+IGIPP FAL+LTYPERVT WNV+
Sbjct: 442  QLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVE 501

Query: 487  KLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSD-DY 546
            KLR AIINGP+ HPGATHY DK +T+K  L  + K+R +I+RKL SSRG   + G   D 
Sbjct: 502  KLREAIINGPDIHPGATHYSDKSSTMK--LPSTEKARRAIARKLLSSRGATTELGKTCDI 561

Query: 547  EFEGKIVNRHLEDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDG 606
             FEGK V+RH+ DGDIVLVNRQPTLHKPS+MAH VRVLKGEKT+R+HYANCSTYNADFDG
Sbjct: 562  NFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDG 621

Query: 607  DEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFD 666
            DEMNVHFPQDEISRAEAYNIVNANNQY +P++GEP+RALIQDHI+S+VLLTK+DTFL  D
Sbjct: 622  DEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKD 681

Query: 667  EFSQLLYSSGISTSRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALL 726
             F+QLL+SSG++       S + G+K+ +   ++E+L V PA+ KP PLWTGKQV+TA+L
Sbjct: 682  HFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVL 741

Query: 727  DHITRGAPPFCVEKDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVP 786
            + IT+G PPF VEK  K+P  FFK R     S +VK   GD +K+K              
Sbjct: 742  NQITKGHPPFTVEKATKLPVDFFKCR-----SREVKPNSGDLTKKK-------------- 801

Query: 787  DEGNSKRDDYSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFGDYGLVHTVQELYGSNT 846
                       + D+   + L++D L I KNE V GVIDKAQF DYGLVHTV ELYGSN 
Sbjct: 802  -----------EIDESWKQNLNEDKLHIRKNEFVCGVIDKAQFADYGLVHTVHELYGSNA 861

Query: 847  AGVLLSVMSRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVK 906
            AG LLSV SRLFTV+LQ HGFTCGVDDL++++ MD+ER KQLQ CEN+GE+V      + 
Sbjct: 862  AGNLLSVFSRLFTVFLQTHGFTCGVDDLIILKDMDEERTKQLQECENVGERVLRKTFGID 921

Query: 907  DGEKLDPMALQLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSV 966
               ++DP  ++  IE+ +  +GE AL SLDR + + LN+   +  V+ DLLS+GLLK   
Sbjct: 922  VDVQIDPQDMRSRIERILYEDGESALASLDRSIVNYLNQ-CSSKGVMNDLLSDGLLKTPG 981

Query: 967  NNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGF 1026
             NCISLMT SGAKG   NFQQISSHLGQQ LEGKRVPRMVSGKTLPCF PWDW+ RAGGF
Sbjct: 982  RNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGF 1041

Query: 1027 IVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDA 1086
            I DRFL+GLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCL+KNLESLKV YD TVRDA
Sbjct: 1042 ISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDA 1101

Query: 1087 DGSIIQFRYGEDGVDVHKNAFIIKFEALAANCEMIYQK-SHHQPDSFNQYINELPSVLQE 1146
            DGSIIQF+YGEDGVDVH+++FI KF+ L  N +M+ QK S       + YI++LP  L++
Sbjct: 1102 DGSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSYISDLPISLKK 1161

Query: 1147 KAEVIYNSFAKDK--APGLGQKDDFIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMT 1206
             AE    +   ++  A    ++++ ++L+++K+ +SLAQPGEPVGVLAAQS+GEPSTQMT
Sbjct: 1162 GAEKFVEAMPMNERIASKFVRQEELLKLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMT 1221

Query: 1207 LNTFHHAGRGEMNVTLGIPRLQEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKI 1266
            LNTFH AGRGEMNVTLGIPRLQEILMTA+ +IKTPIMTCPL +G + +DA  + ++L+KI
Sbjct: 1222 LNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKGKTKEDANDITDRLRKI 1281

Query: 1267 TVADIIESMEVTVVPFSQRKREICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVR 1326
            TVADII+SME++VVP++  + E+CSI+KL+I  Y  E  P+H  ++ ED EE +  VF+R
Sbjct: 1282 TVADIIKSMELSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDITEEDWEETMRAVFLR 1341

Query: 1327 ELEDSIQNEMLLLSRISGIKNFVPDSQSKGLSES-DKVSSSQREENDDDDDVGNDLDVAE 1386
            +LED+I+  M +L RI GI N V    +   +++ D VS  Q E++ DDD  G ++D   
Sbjct: 1342 KLEDAIETHMKMLHRIRGIHNDVTGPIAGNETDNDDSVSGKQNEDDGDDDGEGTEVD--- 1401

Query: 1387 DLGFDMKKQKLRTTDEMDYEDDSEEELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDA 1446
            DLG D +KQK + TDEMDYE++SE+E N     +G E       E D  N+DT E+ K+ 
Sbjct: 1402 DLGSDAQKQKKQETDEMDYEENSEDETNEPSSISGVED-----PEMDSENEDT-EVSKED 1461

Query: 1447 TSEDQTEIIDVSKSNSKGKTTKTSNKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKF-T 1506
            T E Q E ++  K     K  K  +KKK+ K  F R   DR IFV  +G  FEVHFKF T
Sbjct: 1462 TPEPQEESMEPQKEVKGVKNVKEQSKKKRRK--FVRAKSDRHIFVKGEGEKFEVHFKFAT 1521

Query: 1507 NEPHILLTQIAQRTAQKVSIQSSGKIIRCQQITCKEGQVIYHGNDTKVRKNIKPEEKEKV 1566
            ++PHILL QIAQ+TAQKV IQ+SGKI RC    C + QVIYHG++ K R+ I  +EK+  
Sbjct: 1522 DDPHILLAQIAQQTAQKVYIQNSGKIERCTVANCGDPQVIYHGDNPKERREISNDEKKAS 1581

Query: 1567 PALQTTGVDFKTLWELQDELDARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGIS 1626
            PAL  +GVDF  LWE QD+LD RY+YSN IH ML  +GVEAARETIIREI ++F SYGIS
Sbjct: 1582 PALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGIS 1641

Query: 1627 VNIRHLTLIADYMTHSGGYRPMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLE 1686
            V+IRHL LIADYMT SGGYRPM+R+GGIA+S SPF RMTFETA +FIVQAA +GE DTLE
Sbjct: 1642 VSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLE 1670

Query: 1687 TPSARICLGLPVKMGTGSFDLMQKIDV 1696
            TPSARICLGLP   GTG FDLMQ++++
Sbjct: 1702 TPSARICLGLPALSGTGCFDLMQRVEL 1670

BLAST of CmoCh06G000700 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 482.6 bits (1241), Expect = 1.3e-135
Identity = 456/1733 (26.31%), Postives = 728/1733 (42.01%), Query Frame = 0

Query: 12   VKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDETTLCKSCGQRP 71
            +K++ FS +++ EV K + V+V    L D   +P   GL DP MG  ++ ++C +C    
Sbjct: 23   IKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGNF 82

Query: 72   FYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKCASQLELILNGD 131
              CPGH G++ L  PVYN   F  + ++L+  C  C +                      
Sbjct: 83   QNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNM--------------------- 142

Query: 132  VVKAKELDSELLTESSDSKHSNEMQN--MQPKKWTSLQFSEAISAVNKFLKPKQRECKNC 191
                      LL E     H  +M+N  M+P K T L     +   +     +   CK C
Sbjct: 143  ----------LLDEKLYEDHLRKMRNPRMEPLKKTELA-KAVVKKCSTMASQRIITCKKC 202

Query: 192  GAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGISSIEEENTVPQTTVI 251
            G  N  + +    +    G+  +H R+                                I
Sbjct: 203  GYLNGMVKKIAAQF----GIGISHDRSK-------------------------------I 262

Query: 252  NMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFSAGHLLPSEVKHILKRLWKNEAMLCSF 311
            +  E+D    +A   + + +  ++P  +V        L P+ V  + KR+   +  L   
Sbjct: 263  HGGEIDEC-KSAISHTKQSTAAINPLTYV--------LDPNLVLGLFKRMSDKDCELLYI 322

Query: 312  ISDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAK-GGDSIMEHPQTVLLNKVLQSNISL 371
                ++             +  +LVPP+  RP    GG    E+  T  L +++  N SL
Sbjct: 323  AYRPEN-----------LIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASL 382

Query: 372  GNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVS--VGICQLLEKKEGMFRQ 431
                +  +   K +++W  +Q  +    +S+      Q +     GI Q L+ K G FR 
Sbjct: 383  HKILSQPTSSPKNMQVWDTVQIEVARYINSEVRGCQNQPEEHPLSGILQRLKGKGGRFRA 442

Query: 432  KMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPET 491
             + GKRV F  R+VISPDP L + E+GIP   A  LT+PE V+  N++KLR  + NGP  
Sbjct: 443  NLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNK 502

Query: 492  HPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEFEGKIVNRHLED 551
            +PGA +             P   SR  +       R  + D+ +      G IV+RHL++
Sbjct: 503  YPGARNV----------RYPDGSSRTLVG----DYRKRIADELA-----IGCIVDRHLQE 562

Query: 552  GDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEIS 611
            GD+VL NRQP+LH+ SIM H  R++   +T+R + + C+ YNADFDGDEMN+H PQ E +
Sbjct: 563  GDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 622

Query: 612  RAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLYSSGIST 671
            R EA  ++   N    P +GE + A  QD + S+ L+T+KDTF     FS +    G   
Sbjct: 623  RTEAITLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDG- 682

Query: 672  SRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGAPPFCVE 731
                               +S  LP  P + KP  LWTGKQ+ + LL             
Sbjct: 683  ------------------MDSIDLPT-PTILKPIELWTGKQIFSVLL------------- 742

Query: 732  KDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSKRDDYSKF 791
                            N S +V V    K K                   N K+ ++  F
Sbjct: 743  --------------RPNASIRVYVTLNVKEK-------------------NFKKGEHG-F 802

Query: 792  DKLKAERLDDDSLLIFKNELVRGVIDKAQFGD---YGLVHTVQELYGSNTAGVLLSVMSR 851
            D+     ++D  +    +EL+ G + KA  G+    GL   +   Y S+ A V ++ +++
Sbjct: 803  DETMC--INDGWVYFRNSELISGQLGKATLGNGNKDGLYSILLRDYNSHAAAVCMNRLAK 862

Query: 852  LFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQI----CENIGEQVHLGFLKVKDGEKLD 911
            L   ++ +HGF+ G+DD+   + + KER+  +Q     C    E+ + G L++K G  LD
Sbjct: 863  LSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAG--LD 922

Query: 912  PMALQLNIEKTISNNGEPALTSLDRKMTSQLN---ERTGNSKVLKDLLSEGLLKPSVNNC 971
                                 SL+ ++T  LN   E TG +         GL      N 
Sbjct: 923  ------------------GAKSLEAEITGILNTIREATGKA------CMSGL---HWRNS 982

Query: 972  ISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFIVD 1031
              +M+  G+KG   N  Q+ + +GQQ + G R P     ++LP FP    +  A GF+ +
Sbjct: 983  PLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVAN 1042

Query: 1032 RFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDADGS 1091
             F +GL   E++FH M GREGLVDTAVKT+ +GY+ R L+K LE L V YD+TVR+A G 
Sbjct: 1043 SFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGC 1102

Query: 1092 IIQFRYGEDGVD-----------VHKNAFIIKFEALA--------ANCEMIYQKSHHQ-- 1151
            I+QF YG+DG+D           ++ N   +K +A           + E + QK   +  
Sbjct: 1103 ILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEEELV 1162

Query: 1152 --------PDSFNQYINELPSVLQEKA----EVIYNSFAKDKAPGLGQK--DDFIRLLEN 1211
                     D+F + + E  S+L  K+    +V+Y      KA G+  K  + F+++   
Sbjct: 1163 RHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLY------KASGVTDKQLEVFVKICVF 1222

Query: 1212 KYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEILMTASQD 1271
            +Y     + G  +G + AQSIGEP TQMTL TFH AG   MN+T G+PR+ EI+  AS++
Sbjct: 1223 RYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEII-NASKN 1282

Query: 1272 IKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREICSIYKLEI 1331
            I TP+++  L     +  A+ +  +++K T+  + ES+EV +   S   R I        
Sbjct: 1283 ISTPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILD------ 1342

Query: 1332 RFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVPDSQSKGL 1391
                                +I+E   +     S++N +L   RI               
Sbjct: 1343 -------------------NKIIEEACLSITPWSVKNSILKTPRI--------------- 1362

Query: 1392 SESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEEELNVKEP 1451
                       + ND+D                     +R  D                 
Sbjct: 1403 -----------KLNDND---------------------IRVLD----------------- 1362

Query: 1452 SAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSNKKKKAKS 1511
                                        T  D T ++D S++                  
Sbjct: 1463 ----------------------------TGLDITPVVDKSRA------------------ 1362

Query: 1512 EFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQSSGKIIRCQQIT 1571
                              HF +H      P+I++  I  +T ++V +     + + +QI 
Sbjct: 1523 ------------------HFNLHNLKNVLPNIIVNGI--KTVERVVVAED--MDKSKQI- 1362

Query: 1572 CKEGQVIYHGNDTKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDELDARYIYSNDIHAM 1631
                       D K +  +  E    +  + T G++ +T              SN++  +
Sbjct: 1583 -----------DGKTKWKLFVEGTNLLAVMGTPGINGRT------------TTSNNVVEV 1362

Query: 1632 LQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYRPMNRLGGIADSIS 1691
             +T G+EAAR TII EI  +  ++G+S++IRH+ L+AD MT+ G    + R G      S
Sbjct: 1643 SKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKS 1362

Query: 1692 PFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFDLMQKID 1695
               + +FE     +  AA  G+VD +E  +  + +G+P+K+GTG   ++Q+ D
Sbjct: 1703 VLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGILKVLQRTD 1362

BLAST of CmoCh06G000700 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 474.2 bits (1219), Expect = 4.5e-133
Identity = 456/1746 (26.12%), Postives = 727/1746 (41.64%), Query Frame = 0

Query: 12   VKAVAFSFMTEDEVRKHSAVKVTAPILLDAMGRPVAGGLYDPAMGSLDETTLCKSCGQRP 71
            +K++ FS +++ EV K + V+V    L D   +P   GL DP MG  ++ ++C +C    
Sbjct: 23   IKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGNF 82

Query: 72   FYCPGHCGHIDLVSPVYNPLLFIILHNLLQRTCFSCHHFRAGGSQVEKCASQLELILNGD 131
              CPGH G++ L  PVYN   F  + ++L+  C           +V + A  + L     
Sbjct: 83   QNCPGHYGYLKLDLPVYNVGYFNFILDILKCIC-----------KVTELADYVSL----- 142

Query: 132  VVKAKELDSELLTESSDSKHSNEMQN--MQPKKWTSLQFSEAISAVNKFLKPKQRECKNC 191
                    + LL E     H  +M+N  M+P K T L     +   +     +   CK C
Sbjct: 143  -----RCSNMLLDEKLYEDHLRKMRNPRMEPLKKTELA-KAVVKKCSTMASQRIITCKKC 202

Query: 192  GAKNPKITRPTFGWLHMTGLPGAHKRANAIRGCKPASVSSGAEGISSIEEENTVPQTTVI 251
            G  N  + +    +    G+  +H R+                                I
Sbjct: 203  GYLNGMVKKIAAQF----GIGISHDRSK-------------------------------I 262

Query: 252  NMSEVDVFDDTATKASVEDSEEVSPEIFVPKNFSAGHLLPSEVKHILKRLWKNEAMLCSF 311
            +  E+D    +A   + + +  ++P  +V        L P+ V  + KR+   +  L   
Sbjct: 263  HGGEIDEC-KSAISHTKQSTAAINPLTYV--------LDPNLVLGLFKRMSDKDCELLYI 322

Query: 312  ISDIQHQGYGNKAGHSMFFLEAVLVPPIKFRPPAK-GGDSIMEHPQTVLLNKVLQSNISL 371
                ++             +  +LVPP+  RP    GG    E+  T  L +++  N SL
Sbjct: 323  AYRPEN-----------LIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASL 382

Query: 372  GNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVS--VGICQLLEKKEGMFRQ 431
                +  +   K +++W  +Q  +    +S+      Q +     GI Q L+ K G FR 
Sbjct: 383  HKILSQPTSSPKNMQVWDTVQIEVARYINSEVRGCQNQPEEHPLSGILQRLKGKGGRFRA 442

Query: 432  KMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGPET 491
             + GKRV F  R+VISPDP L + E+GIP   A  LT+PE V+  N++KLR  + NGP  
Sbjct: 443  NLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNK 502

Query: 492  HPGATHYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEFEGKIVNRHLED 551
            +PGA +             P   SR  +       R  + D+ +      G IV+RHL++
Sbjct: 503  YPGARNV----------RYPDGSSRTLVG----DYRKRIADELA-----IGCIVDRHLQE 562

Query: 552  GDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEIS 611
            GD+VL NRQP+LH+ SIM H  R++   +T+R + + C+ YNADFDGDEMN+H PQ E +
Sbjct: 563  GDVVLFNRQPSLHRMSIMCHRARIMPW-RTLRFNESVCNPYNADFDGDEMNMHVPQTEEA 622

Query: 612  RAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLYSSGIST 671
            R EA  ++   N    P +GE + A  QD + S+ L+T+KDTF     FS +    G   
Sbjct: 623  RTEAITLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDG- 682

Query: 672  SRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGAPPFCVE 731
                               +S  LP  P + KP  LWTGKQ+ + LL             
Sbjct: 683  ------------------MDSIDLPT-PTILKPIELWTGKQIFSVLL------------- 742

Query: 732  KDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSKRDDYSKF 791
                            N S +V V    K K                   N K+ ++  F
Sbjct: 743  --------------RPNASIRVYVTLNVKEK-------------------NFKKGEHG-F 802

Query: 792  DKLKAERLDDDSLLIFKNELVRGVIDKAQF----------GDYGLVHTVQELYGSNTAGV 851
            D+     ++D  +    +EL+ G + KA               GL   +   Y S+ A V
Sbjct: 803  DETMC--INDGWVYFRNSELISGQLGKATLALDIFPLGNGNKDGLYSILLRDYNSHAAAV 862

Query: 852  LLSVMSRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQI----CENIGEQVHLGFLKV 911
             ++ +++L   ++ +HGF+ G+DD+   + + KER+  +Q     C    E+ + G L++
Sbjct: 863  CMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQL 922

Query: 912  KDGEKLDPMALQLNIEKTISNNGEPALTSLDRKMTSQLN---ERTGNSKVLKDLLSEGLL 971
            K G  LD                     SL+ ++T  LN   E TG +         GL 
Sbjct: 923  KAG--LD------------------GAKSLEAEITGILNTIREATGKA------CMSGL- 982

Query: 972  KPSVNNCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASR 1031
                 N   +M+  G+KG   N  Q+ + +GQQ + G R P     ++LP FP    +  
Sbjct: 983  --HWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPA 1042

Query: 1032 AGGFIVDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHT 1091
            A GF+ + F +GL   E++FH M GREGLVDTAVKT+ +GY+ R L+K LE L V YD+T
Sbjct: 1043 AKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNT 1102

Query: 1092 VRDADGSIIQFRYGEDGVD-----------VHKNAFIIKFEALA--------ANCEMIYQ 1151
            VR+A G I+QF YG+DG+D           ++ N   +K +A           + E + Q
Sbjct: 1103 VRNASGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQ 1162

Query: 1152 KSHHQ----------PDSFNQYINELPSVLQEKA----EVIYNSFAKDKAPGLGQK--DD 1211
            K   +           D+F + + E  S+L  K+    +V+Y      KA G+  K  + 
Sbjct: 1163 KFEEELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLY------KASGVTDKQLEV 1222

Query: 1212 FIRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLGIPRLQEI 1271
            F+++   +Y     + G  +G + AQSIGEP TQMTL TFH AG   MN+T G+PR+ EI
Sbjct: 1223 FVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEI 1282

Query: 1272 LMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFSQRKREIC 1331
            +  AS++I TP+++  L     +  A+ +  +++K T+  + ES+EV +   S   R I 
Sbjct: 1283 I-NASKNISTPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIIL 1342

Query: 1332 SIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRISGIKNFVP 1391
                                       +I+E   +     S++N +L   RI        
Sbjct: 1343 D-------------------------NKIIEEACLSITPWSVKNSILKTPRI-------- 1377

Query: 1392 DSQSKGLSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMDYEDDSEE 1451
                              + ND+D                     +R  D          
Sbjct: 1403 ------------------KLNDND---------------------IRVLD---------- 1377

Query: 1452 ELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKGKTTKTSN 1511
                                               T  D T ++D S++           
Sbjct: 1463 -----------------------------------TGLDITPVVDKSRA----------- 1377

Query: 1512 KKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVSIQS---- 1571
                                     HF +H      P+I++  I  +T ++V +      
Sbjct: 1523 -------------------------HFNLHNLKNVLPNIIVNGI--KTVERVVVAEDMDK 1377

Query: 1572 --SGKIIRCQQITCKEGQVIYHGNDTKVRKNIKPEEKEKVPALQTTGVDFKTLWELQDEL 1631
              +  II C +  C                         +  + T G++ +T        
Sbjct: 1583 MLAKLIIPCPRWAC----------------------TNLLAVMGTPGINGRT-------- 1377

Query: 1632 DARYIYSNDIHAMLQTYGVEAARETIIREIRNIFSSYGISVNIRHLTLIADYMTHSGGYR 1691
                  SN++  + +T G+EAAR TII EI  +  ++G+S++IRH+ L+AD MT+ G   
Sbjct: 1643 ----TTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVL 1377

Query: 1692 PMNRLGGIADSISPFSRMTFETAARFIVQAAYHGEVDTLETPSARICLGLPVKMGTGSFD 1695
             + R G      S   + +FE     +  AA  G+VD +E  +  + +G+P+K+GTG   
Sbjct: 1703 GIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGILK 1377

BLAST of CmoCh06G000700 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 408.7 bits (1049), Expect = 2.3e-113
Identity = 401/1506 (26.63%), Postives = 604/1506 (40.11%), Query Frame = 0

Query: 311  SDIQHQGYGNK-AGHSMFFLEAVLVPPIKFRPPA-KGGDSIMEHPQTVLLNKVLQSNISL 370
            +D Q  G+  K A      LE + +PP   RP       S  E   T  L  +++ N +L
Sbjct: 228  ADCQLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENL 287

Query: 371  GNAHANKSEHSKIVRLWMDLQQSINVLFDSKTASGPGQKDVS----VGICQLLEKKEGMF 430
                 N +    I      LQ  I   FD++    P     S      IC  L+ KEG  
Sbjct: 288  KRQEKNGAPAHIISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRI 347

Query: 431  RQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTAWNVQKLRNAIINGP 490
            R  +MGKRV+F+ R+VI+PDP + ++E+G+P   AL LTYPE VT +N+++L+  +  GP
Sbjct: 348  RGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGP 407

Query: 491  ETHPGAT--HYIDKLATVKLNLKPSRKSRISISRKLPSSRGVVVDQGSDDYEFEGKIVNR 550
               PG T   YI +    +L+L+  +KS                   SD +   G  V R
Sbjct: 408  HPPPGKTGAKYIIRDDGQRLDLRYLKKS-------------------SDQHLELGYKVER 467

Query: 551  HLEDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTIRMHYANCSTYNADFDGDEMNVHFPQ 610
            HL+DGD VL NRQP+LHK SIM H +R++    T R++ +  S YNADFDGDEMN+H PQ
Sbjct: 468  HLQDGDFVLFNRQPSLHKMSIMGHRIRIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQ 527

Query: 611  DEISRAEAYNIVNANNQYVKPTSGEPIRALIQDHIISAVLLTKKDTFLKFDEFSQLLYSS 670
               +RAE   ++      V P +  P+  ++QD ++    +TK+DTF++ D F   L   
Sbjct: 528  SFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNTL--- 587

Query: 671  GISTSRPCASSEKPGQKIFILDFESEMLPVLPAVWKPEPLWTGKQVVTALLDHITRGAPP 730
                             ++  DF+ ++    PA+ KP PLWTGKQV   +          
Sbjct: 588  -----------------MWWEDFDGKV--PAPAILKPRPLWTGKQVFNLI---------- 647

Query: 731  FCVEKDVKIPRGFFKSRHTGNNSSKVKVADGDKSKRKRTWNGIKLGKGEVPDEGNSKRDD 790
              + K + + R  + + H    +    +  GD   R                        
Sbjct: 648  --IPKQINLLR--YSAWHADTETG--FITPGDTQVR------------------------ 707

Query: 791  YSKFDKLKAERLDDDSLLIFKNELVRGVIDKAQFG--DYGLVHTVQELYGSNTAGVLLSV 850
                              I + EL+ G + K   G  +  LVH + E  G + A   L  
Sbjct: 708  ------------------IERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDAARKFLGH 767

Query: 851  MSRLFTVYLQMHGFTCGVDDLLLIQCMDKEREKQLQICENIGEQVHLGFLKVKD------ 910
               L   +L  +GFT G+ D +                E I E +      VKD      
Sbjct: 768  TQWLVNYWLLQNGFTIGIGDTI----------ADSSTMEKINETISNAKTAVKDLIRQFQ 827

Query: 911  GEKLDPMALQLNIEKTISNNGEPALTSLDRKMTSQLNERTGNSKVLKDLLSEGLLKPSVN 970
            G++LDP               EP  T  D    +++N+    +K   D  S      +  
Sbjct: 828  GKELDP---------------EPGRTMRD-TFENRVNQVL--NKARDDAGSSAQKSLAET 887

Query: 971  NCISLMTTSGAKGGTANFQQISSHLGQQQLEGKRVPRMVSGKTLPCFPPWDWASRAGGFI 1030
            N +  M T+G+KG   N  Q+++ +GQQ +EGKR+P    G+TLP F   D+   + GF+
Sbjct: 888  NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFV 947

Query: 1031 VDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKNLESLKVGYDHTVRDAD 1090
             + +L GL PQE++FH M GREGL+DTAVKTS +GY+QR L+K +E + V YD TVR++ 
Sbjct: 948  ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 1007

Query: 1091 GSIIQFRYGEDGVD-------------VHKNAF--IIKFEALAANCEMIYQKSHHQPDSF 1150
            G +IQF YGEDG+D             + K+ F    K+E    N    Y    H  D  
Sbjct: 1008 GDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDL- 1067

Query: 1151 NQYINELPSVL------------------------------------------------- 1210
             + I EL  V                                                  
Sbjct: 1068 -KGIRELRDVFDAEYSKLETDRFQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRK 1127

Query: 1211 ---------------------------------QEKAEVIYNSFAKDKAPGLGQKDDF-- 1270
                                             Q+ A + +N   +         +++  
Sbjct: 1128 ISDMHPVEIVDAVDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKL 1187

Query: 1271 --------IRLLENKYLSSLAQPGEPVGVLAAQSIGEPSTQMTLNTFHHAGRGEMNVTLG 1330
                    I  +E+++L SL  PGE +G +AAQSIGEP+TQMTLNTFH+AG    NVTLG
Sbjct: 1188 SREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLG 1247

Query: 1331 IPRLQEILMTASQDIKTPIMTCPLREGYSMDDAKCLANKLKKITVADIIESMEVTVVPFS 1390
            +PRL+EI+  A + IKTP                                S+ V + P +
Sbjct: 1248 VPRLREIINVAKR-IKTP--------------------------------SLSVYLTPEA 1307

Query: 1391 QRKREICSIYKLEIRFYPLESNPQHAHVSSEDLEEILEFVFVRELEDSIQNEMLLLSRIS 1450
             + +E     +  + +  L S  Q   V                                
Sbjct: 1308 SKSKEGAKTVQCALEYTTLRSVTQATEVW------------------------------- 1367

Query: 1451 GIKNFVPDSQSKGLSESDKVSSSQREENDDDDDVGNDLDVAEDLGFDMKKQKLRTTDEMD 1510
                + PD  S  + E  +   S  E  D+        DV+ D     K        E++
Sbjct: 1368 ----YDPDPMSTIIEEDFEFVRSYYEMPDE--------DVSPD-----KISPWLLRIELN 1427

Query: 1511 YEDDSEEELNVKEPSAGFESEVDQGDEADITNDDTMEIVKDATSEDQTEIIDVSKSNSKG 1570
             E   +++L++ + +     E D  D   I NDD            Q  I+ +   N +G
Sbjct: 1428 REMMVDKKLSMADIAEKINLEFDD-DLTCIFNDDNA----------QKLILRIRIMNDEG 1464

Query: 1571 KTTKTSNKKKKAKSEFSRKDYDRAIFVSAKGNHFEVHFKFTNEPHILLTQIAQRTAQKVS 1630
                        K E   +  +  +F+    ++             +LT++A R      
Sbjct: 1488 -----------PKGELQDESAEDDVFLKKIESN-------------MLTEMALR-----G 1464

Query: 1631 IQSSGKIIRCQQITCKEGQVIYHGNDTKVRKNIKPEE----KEKVPALQTTGVDFKTLWE 1690
            I    K+   Q                 VRK+   EE      +   L T GV+   +  
Sbjct: 1548 IPDINKVFIKQ-----------------VRKSRFDEEGGFKTSEEWMLDTEGVNLLAVM- 1464

BLAST of CmoCh06G000700 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-25
Identity = 112/413 (27.12%), Postives = 181/413 (43.83%), Query Frame = 0

Query: 287 LLPSEVKHILKRLWKNEAMLCSFISDIQHQGYGNKAGHSMFFLEAVLVPPIKFR-PPAKG 346
           LL  EVK IL+R+ +      +    I  +GY          LE + VPP     P A  
Sbjct: 175 LLAREVKEILRRIPEESRKKLTAKGHIPQEGY---------ILEYLPVPPNCLSVPEASD 234

Query: 347 GDSIME-HPQTVLLNKVLQSNISL-------GNAHANKSEHSKIVRLWMDLQQSINVLFD 406
           G S M   P  + L  VL+  I++        N  ++K+E S++ R+ +D    +     
Sbjct: 235 GFSTMSVDPSRIELKDVLKKVIAIKSSRSGETNFESHKAEASEMFRV-VDTYLQVR---- 294

Query: 407 SKTASGPGQKDVSVGICQLLEKKEG-----MFRQKMMGKRVNFACRSVISPDPYLAVNEI 466
             TA      D+  G+ ++ +           R   + K   F+ RSVI+ D Y  VNE+
Sbjct: 295 -GTAKAARNIDMRYGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEV 354

Query: 467 GIPPYFALRLTYPERVTAWNVQKLRNAIINGPETHPGATHYIDKLATVKLNLKPSRKSRI 526
           GIP   A R+T+ ERV+  N                    Y+ KL   KL L  ++ S  
Sbjct: 355 GIPIEIAQRITFEERVSVHN------------------RGYLQKLVDDKLCLSYTQGSTT 414

Query: 527 SISRKLPSSRGVVVDQGSDDYEFE-GKIVNRHLEDGDIVLVNRQPTLHKPSIMAHVVRVL 586
              R          D      E + G++V+R + DGD+V +NR PT HK S+ A  V V 
Sbjct: 415 YSLR----------DGSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVH 474

Query: 587 KGEKTIRMHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYVKPTSGEPIRA 646
           + + T++++   CS  +ADFDGD +++ +PQ   ++AE   + +   Q +   +G+ I  
Sbjct: 475 E-DNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQ 534

Query: 647 LIQDHIISAVLLTKKDTFLKFDEFSQLLYSSGISTSRPC---ASSEKPGQKIF 682
           +  D ++S  ++ ++  FL      QL     +S   P    +S   P   +F
Sbjct: 535 MGSDSLLSLRVMLER-VFLDKATAQQLAMYGSLSLPPPALRKSSKSGPAWTVF 542