CmoCh06G000610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor CSA-like
Location	Cmo_Chr06: 386551 .. 388065 (+)
RNA-Seq Expression	CmoCh06G000610
Synteny	CmoCh06G000610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGATTCCATTTCCTTTCTATAATGAACCTTCGATGCTTCAACGATGCCTTTCAAACTCATGGGTTGTTTCAAAATGTCGCCTTGATGCCGCCCCCTCCTCCTGCCTCTCTCGATCTCTCACCGCCGTCCCACGGCGGTGAGAGCGGCAGATCAAATTGCGAGGACAGAGAGAAACAAGAAGAAGATGGTAAAACTAACGGTGCCCGCCGCCGCACTAAGCTTTGTGCTAGAGGCCATTGGAGACCGGCGGAGGATGCTAAGCTCAAAGAGCTTGTCGCCCATTATGGCCCCCAAAATTGGAACATGATCGCCGAGAATCTCCGTGGTAGATCAGGTATGTTCGAGGGAATTTTGTTGAGGTTTTGAGTATTTTCTTCAAAGATTATGACTTTTTTTTTGTGGGTGTGAAGGGAAAAGCTGTAGATTGAGATGGTTCAACCAGTTGGATCCAAGGATAAACAGAAAGGCCTTCAACGAGGAAGAAGAAGAGAGGCTCTTAACAGCACATAGATTGTACGGCAACAAATGGGCCATGATCGCTCGTTTGTTTCCTGGTAGAACTGATAATGCTGTCAAGAATCATTGGCACGTGATCATGGCTAGGAAACGTCGACAATACTCCAATCTTTACAGAAGATCCTCCCGGAAAGCCTTCCATAAACATAATGTGTCCAGTGAATCCACCATCTCCAGCACCGTCGATGAATCCCCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCCCTGCCCCTGCCCCTGCCCCTAGTAAGTTCATAAAGTGATGATTTTTATATTGTTTTTAAGCTCAGAGTTGAGATTTGAAGTTTGAATATTTCATGGATTGTAGGATGGTGCAGCAGGAAAGGAGTGGCGGCGGATGTGGGGAAGATCGGGTGCTGGGAAAAAACAGAGGAGGTGATGGCGGCGGAGCAGTCGTCGGGGTCGAACTCGGAAGTTTCAGGGGCGGAGTCAGAGATCTCGACGAACCTCTCCTTAGCATCTGGCCGGGAAAGCATGAATGGGAACGGCGCTCACCATATGAAAATGCAGTTCATTGATTTCCTTGGAGTTGGAGCTGCGTAACTTTACTCCTCTGTTTCTCTGTTTCCTTTATGAAAAGCAGAGTCTAAATGTAAACAAAACAATCTCCGTTGTTTCTCTCTACAATGTACAGTGAGGCATGGCAGAGAATGATGAGAGAAAGCCAAAAAGATATTAAAAAAAAAAAAAATGAAGATTTTGGAGTTTCTTTTGGAAATGGGTTGTTAAAGAGATTAGGGGTTTTGTAGATGAAGAGCTTCTACTTATGCTTCTGCAATTAATGTTCACAAATGCTCTTCCTCTACCACATACTGTCTTTAATGAACCCATTTCAAATTATTGTACCCACCTGACCCTTCAAGTGTTTTTCGATTTGTTTTAGCACGTGCCACAATTTGAACTTTCAATCTTAAAAGACGAATATCAAGAGGTA

mRNA sequence

TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGATTCCATTTCCTTTCTATAATGAACCTTCGATGCTTCAACGATGCCTTTCAAACTCATGGGTTGTTTCAAAATGTCGCCTTGATGCCGCCCCCTCCTCCTGCCTCTCTCGATCTCTCACCGCCGTCCCACGGCGGTGAGAGCGGCAGATCAAATTGCGAGGACAGAGAGAAACAAGAAGAAGATGGTAAAACTAACGGTGCCCGCCGCCGCACTAAGCTTTGTGCTAGAGGCCATTGGAGACCGGCGGAGGATGCTAAGCTCAAAGAGCTTGTCGCCCATTATGGCCCCCAAAATTGGAACATGATCGCCGAGAATCTCCGTGGTAGATCAGGGAAAAGCTGTAGATTGAGATGGTTCAACCAGTTGGATCCAAGGATAAACAGAAAGGCCTTCAACGAGGAAGAAGAAGAGAGGCTCTTAACAGCACATAGATTGTACGGCAACAAATGGGCCATGATCGCTCGTTTGTTTCCTGGTAGAACTGATAATGCTGTCAAGAATCATTGGCACGTGATCATGGCTAGGAAACGTCGACAATACTCCAATCTTTACAGAAGATCCTCCCGGAAAGCCTTCCATAAACATAATGTGTCCAGTGAATCCACCATCTCCAGCACCGTCGATGAATCCCCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCCCTGCCCCTGCCCCTGCCCCTAGATGGTGCAGCAGGAAAGGAGTGGCGGCGGATGTGGGGAAGATCGGGTGCTGGGAAAAAACAGAGGAGGTGATGGCGGCGGAGCAGTCGTCGGGGTCGAACTCGGAAGTTTCAGGGGCGGAGTCAGAGATCTCGACGAACCTCTCCTTAGCATCTGGCCGGGAAAGCATGAATGGGAACGGCGCTCACCATATGAAAATGCAGTTCATTGATTTCCTTGGAGTTGGAGCTGCGTAACTTTACTCCTCTGTTTCTCTGTTTCCTTTATGAAAAGCAGAGTCTAAATGTAAACAAAACAATCTCCGTTGTTTCTCTCTACAATGTACAGTGAGGCATGGCAGAGAATGATGAGAGAAAGCCAAAAAGATATTAAAAAAAAAAAAAATGAAGATTTTGGAGTTTCTTTTGGAAATGGGTTGTTAAAGAGATTAGGGGTTTTGTAGATGAAGAGCTTCTACTTATGCTTCTGCAATTAATGTTCACAAATGCTCTTCCTCTACCACATACTGTCTTTAATGAACCCATTTCAAATTATTGTACCCACCTGACCCTTCAAGTGTTTTTCGATTTGTTTTAGCACGTGCCACAATTTGAACTTTCAATCTTAAAAGACGAATATCAAGAGGTA

Coding sequence (CDS)

ATGAACCTTCGATGCTTCAACGATGCCTTTCAAACTCATGGGTTGTTTCAAAATGTCGCCTTGATGCCGCCCCCTCCTCCTGCCTCTCTCGATCTCTCACCGCCGTCCCACGGCGGTGAGAGCGGCAGATCAAATTGCGAGGACAGAGAGAAACAAGAAGAAGATGGTAAAACTAACGGTGCCCGCCGCCGCACTAAGCTTTGTGCTAGAGGCCATTGGAGACCGGCGGAGGATGCTAAGCTCAAAGAGCTTGTCGCCCATTATGGCCCCCAAAATTGGAACATGATCGCCGAGAATCTCCGTGGTAGATCAGGGAAAAGCTGTAGATTGAGATGGTTCAACCAGTTGGATCCAAGGATAAACAGAAAGGCCTTCAACGAGGAAGAAGAAGAGAGGCTCTTAACAGCACATAGATTGTACGGCAACAAATGGGCCATGATCGCTCGTTTGTTTCCTGGTAGAACTGATAATGCTGTCAAGAATCATTGGCACGTGATCATGGCTAGGAAACGTCGACAATACTCCAATCTTTACAGAAGATCCTCCCGGAAAGCCTTCCATAAACATAATGTGTCCAGTGAATCCACCATCTCCAGCACCGTCGATGAATCCCCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCCCTGCCCCTGCCCCTGCCCCTAGATGGTGCAGCAGGAAAGGAGTGGCGGCGGATGTGGGGAAGATCGGGTGCTGGGAAAAAACAGAGGAGGTGATGGCGGCGGAGCAGTCGTCGGGGTCGAACTCGGAAGTTTCAGGGGCGGAGTCAGAGATCTCGACGAACCTCTCCTTAGCATCTGGCCGGGAAAGCATGAATGGGAACGGCGCTCACCATATGAAAATGCAGTTCATTGATTTCCTTGGAGTTGGAGCTGCGTAA

Protein sequence

MNLRCFNDAFQTHGLFQNVALMPPPPPASLDLSPPSHGGESGRSNCEDREKQEEDGKTNGARRRTKLCARGHWRPAEDAKLKELVAHYGPQNWNMIAENLRGRSGKSCRLRWFNQLDPRINRKAFNEEEEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKRRQYSNLYRRSSRKAFHKHNVSSESTISSTVDESPASASASASASASAPAPAPAPRWCSRKGVAADVGKIGCWEKTEEVMAAEQSSGSNSEVSGAESEISTNLSLASGRESMNGNGAHHMKMQFIDFLGVGAA

Homology

[Close]

BLAST of CmoCh06G000610 vs. ExPASy Swiss-Prot
Match: Q5NBM8 (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2)

HSP 1 Score: 218.0 bits (554), Expect = 1.5e-55
Identity = 121/204 (59.31%), Postives = 137/204 (67.16%), Query Frame = 0


Query: 23  PPPPPASLDLSPPSHGGESGRSNCEDREKQEEDGKTNGARRRTKLCARGHWRPAEDAKLK 82
           PPPPPA+  +         G    E  E+ EE G   G   + KLCARGHWRPAEDAKLK
Sbjct: 13  PPPPPATAAV---------GEEEDEVVEETEEGGHGGGV--QGKLCARGHWRPAEDAKLK 72

Query: 83  ELVAHYGPQNWNMIAENLRGRSGKSCRLRWFNQLDPRINRKAFNEEEEERLLTAHRLYGN 142
           +LVA YGPQNWN+IAE L GRSGKSCRLRWFNQLDPRINR+AF EEEEERL+ AHR YGN
Sbjct: 73  DLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMAAHRAYGN 132

Query: 143 KWAMIARLFPGRTDNAVKNHWHVIMARKRRQYSNLYRRSSRKAFHKHNVSSESTISSTVD 202
           KWA+IARLFPGRTDNAVKNHWHV+MAR+ R+ S  +RR                      
Sbjct: 133 KWALIARLFPGRTDNAVKNHWHVLMARRHREQSGAFRR---------------------- 180

Query: 203 ESPASASASASASASAPAPAPAPR 227
             P+S+SAS    A APAP P P+
Sbjct: 193 RKPSSSSAS---PAPAPAPPPPPQ 180

[Close]

BLAST of CmoCh06G000610 vs. ExPASy Swiss-Prot
Match: Q9LQX5 (Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 6.8e-53
Identity = 101/147 (68.71%), Postives = 118/147 (80.27%), Query Frame = 0


Query: 36  SHGGESGRSNCEDREKQEEDGKTNGARRRTK--LCARGHWRPAEDAKLKELVAHYGPQNW 95
           S+      SN E  +K+  D   + +   +K  +  RGHWRPAED KLKELV+ YGPQNW
Sbjct: 62  SNNNNPNFSNSESGKKETTDSGQSWSSSSSKPSVLGRGHWRPAEDVKLKELVSIYGPQNW 121

Query: 96  NMIAENLRGRSGKSCRLRWFNQLDPRINRKAFNEEEEERLLTAHRLYGNKWAMIARLFPG 155
           N+IAE L+GRSGKSCRLRWFNQLDPRINR+AF EEEEERL+ AHRLYGNKWAMIARLFPG
Sbjct: 122 NLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPG 181

Query: 156 RTDNAVKNHWHVIMARKRRQYSNLYRR 181
           RTDN+VKNHWHV+MARK R++S+ YRR
Sbjct: 182 RTDNSVKNHWHVVMARKYREHSSAYRR 208

[Close]

BLAST of CmoCh06G000610 vs. ExPASy Swiss-Prot
Match: Q9SEZ4 (Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.4e-50
Identity = 101/146 (69.18%), Postives = 116/146 (79.45%), Query Frame = 0


Query: 69  ARGHWRPAEDAKLKELVAHYGPQNWNMIAENLRGRSGKSCRLRWFNQLDPRINRKAFNEE 128
           +RGHWRPAED KLKELVA YGPQNWN+IAE L+GRSGKSCRLRWFNQLDPRINR+AF EE
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 129 EEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKRRQYSNLYRRSSRKAFHK 188
           EEERL+ AHRLYGNKWAMIARLFPGRTDN+VKNHWHVIMARK R+ S+ YRR       K
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSYRRRKTMVSLK 225

Query: 189 HNVSSESTISSTVDESPASASASASA 215
             ++    I +  D +  + +  AS+
Sbjct: 226 PLINPNPHIFNDFDPTRLALTHLASS 251

[Close]

BLAST of CmoCh06G000610 vs. ExPASy Swiss-Prot
Match: Q9FX36 (Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.6e-48
Identity = 86/109 (78.90%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 67  LCARGHWRPAEDAKLKELVAHYGPQNWNMIAENLRGRSGKSCRLRWFNQLDPRINRKAFN 126
           +C+RGHWRPAED KLK+LV  YGP NWN IA  L GRSGKSCRLRWFNQLDPRINR  F 
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 127 EEEEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKRRQYS 176
           EEEEERLL AHR++GN+W++IARLFPGRTDNAVKNHWHVIMAR+ RQ S
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTS 111

[Close]

BLAST of CmoCh06G000610 vs. ExPASy Swiss-Prot
Match: Q6R0C4 (Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.3e-47
Identity = 84/114 (73.68%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 67  LCARGHWRPAEDAKLKELVAHYGPQNWNMIAENLRGRSGKSCRLRWFNQLDPRINRKAFN 126
           +C+RGHWRPAED KL+ELV  +GP NWN IA+ L GRSGKSCRLRWFNQLDPRINR  F 
Sbjct: 2   MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFT 61

Query: 127 EEEEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKRRQYSNLYRR 181
           EEEEERLL +HR++GN+W++IAR FPGRTDNAVKNHWHVIMAR+ R+ S L  R
Sbjct: 62  EEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSKLRPR 115

[Close]

BLAST of CmoCh06G000610 vs. ExPASy TrEMBL
Match: A0A6J1GZ69 (transcription factor CSA-like OS=Cucurbita moschata OX=3662 GN=LOC111458809 PE=4 SV=1)

HSP 1 Score: 598.2 bits (1541), Expect = 1.9e-167
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0


Query: 1   MNLRCFNDAFQTHGLFQNVALMPPPPPASLDLSPPSHGGESGRSNCEDREKQEEDGKTNG 60
           MNLRCFNDAFQTHGLFQNVALMPPPPPASLDLSPPSHGGESGRSNCEDREKQEEDGKTNG
Sbjct: 1   MNLRCFNDAFQTHGLFQNVALMPPPPPASLDLSPPSHGGESGRSNCEDREKQEEDGKTNG 60

Query: 61  ARRRTKLCARGHWRPAEDAKLKELVAHYGPQNWNMIAENLRGRSGKSCRLRWFNQLDPRI 120
           ARRRTKLCARGHWRPAEDAKLKELVAHYGPQNWNMIAENLRGRSGKSCRLRWFNQLDPRI
Sbjct: 61  ARRRTKLCARGHWRPAEDAKLKELVAHYGPQNWNMIAENLRGRSGKSCRLRWFNQLDPRI 120

Query: 121 NRKAFNEEEEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKRRQYSNLYRR 180
           NRKAFNEEEEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKRRQYSNLYRR
Sbjct: 121 NRKAFNEEEEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKRRQYSNLYRR 180

Query: 181 SSRKAFHKHNVSSESTISSTVDESPASASASASASASAPAPAPAPRWCSRKGVAADVGKI 240
           SSRKAFHKHNVSSESTISSTVDESPASASASASASASAPAPAPAPRWCSRKGVAADVGKI
Sbjct: 181 SSRKAFHKHNVSSESTISSTVDESPASASASASASASAPAPAPAPRWCSRKGVAADVGKI 240

Query: 241 GCWEKTEEVMAAEQSSGSNSEVSGAESEISTNLSLASGRESMNGNGAHHMKMQFIDFLGV 300
           GCWEKTEEVMAAEQSSGSNSEVSGAESEISTNLSLASGRESMNGNGAHHMKMQFIDFLGV
Sbjct: 241 GCWEKTEEVMAAEQSSGSNSEVSGAESEISTNLSLASGRESMNGNGAHHMKMQFIDFLGV 300

Query: 301 GAA 304
           GAA
Sbjct: 301 GAA 303

[Close]

BLAST of CmoCh06G000610 vs. ExPASy TrEMBL
Match: A0A6J1I8Z9 (transcription factor CSA-like OS=Cucurbita maxima OX=3661 GN=LOC111470258 PE=4 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 2.3e-157
Identity = 286/303 (94.39%), Postives = 290/303 (95.71%), Query Frame = 0


Query: 1   MNLRCFNDAFQTHGLFQNVALMPPPPPASLDLSPPSHGGESGRSNCEDREKQEEDGKTNG 60
           MNL+CFNDAFQTHG+FQNVA MPPPPPASLDLSPPSHGG SGRSNCEDREKQEEDGKTNG
Sbjct: 1   MNLQCFNDAFQTHGVFQNVAFMPPPPPASLDLSPPSHGGHSGRSNCEDREKQEEDGKTNG 60

Query: 61  ARRRTKLCARGHWRPAEDAKLKELVAHYGPQNWNMIAENLRGRSGKSCRLRWFNQLDPRI 120
           ARRRTKLCARGHWRPAEDAKLKELVAHYGPQNWN+IAENLRGRSGKSCRLRWFNQLDPRI
Sbjct: 61  ARRRTKLCARGHWRPAEDAKLKELVAHYGPQNWNLIAENLRGRSGKSCRLRWFNQLDPRI 120

Query: 121 NRKAFNEEEEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKRRQYSNLYRR 180
           NRKAFNEEEEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARK RQYSNLYRR
Sbjct: 121 NRKAFNEEEEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKHRQYSNLYRR 180

Query: 181 SSRKAFHKHNVSSESTISSTVDESPASASASASASASAPAPAPAPRWCSRKGVAADVGKI 240
           SSRKAFHKHNVSSESTISSTVDESP      ASASASAPAPAPAPRWCSRKGVAA VGKI
Sbjct: 181 SSRKAFHKHNVSSESTISSTVDESP------ASASASAPAPAPAPRWCSRKGVAAGVGKI 240

Query: 241 GCWEKTEEVMAAEQSSGSNSEVSGAESEISTNLSLASGRESMNGNGAHHMKMQFIDFLGV 300
           GCWEKTEEVMAAEQSSGSNSEVSGAESEISTNLSLASG ESMNGN  HHMKMQFIDFLGV
Sbjct: 241 GCWEKTEEVMAAEQSSGSNSEVSGAESEISTNLSLASGWESMNGNDGHHMKMQFIDFLGV 297

Query: 301 GAA 304
           GA+
Sbjct: 301 GAS 297

[Close]

BLAST of CmoCh06G000610 vs. ExPASy TrEMBL
Match: A0A6J1J4P4 (transcription factor MYB56-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481730 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 1.3e-86
Identity = 199/308 (64.61%), Postives = 212/308 (68.83%), Query Frame = 0


Query: 1   MNLRCFNDAFQTHGLFQNVALMPPPPPASLDLSPPSHGGESGRSNCEDREKQEEDGKTNG 60
           MNL  FN AF  +GL QN ALMPP PP       PS  G +  +            K N 
Sbjct: 1   MNLPPFNHAFPGNGLLQNPALMPPLPPPL-----PSSDGTAIVT------------KNNA 60

Query: 61  ARRRTKLCARGHWRPAEDAKLKELVAHYGPQNWNMIAENLRGRSGKSCRLRWFNQLDPRI 120
            RR TKLCARGHWRPAEDAKLKELVAHYGPQNWN+IAENLRGRSGKSCRLRWFNQLDPRI
Sbjct: 61  PRRHTKLCARGHWRPAEDAKLKELVAHYGPQNWNLIAENLRGRSGKSCRLRWFNQLDPRI 120

Query: 121 NRKAFNEEEEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKRRQYSNLYRR 180
           NR AFNEEEEERL+TAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARK+       RR
Sbjct: 121 NRTAFNEEEEERLVTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKQ-------RR 180

Query: 181 SSRKAFHKHNVSSESTISSTVDESPASASASASASASAPAPAPAPRWCSRKGVAADVGKI 240
           S RK F K+NVS ESTISSTV  S AS                  RWCS       +GK+
Sbjct: 181 SLRKIFQKNNVSGESTISSTVSTSAAS------------------RWCS------GMGKV 240

Query: 241 GCWEKTEEVMAAEQS--SGSNSEVSGAESEISTNLSLASGRESMNGNGAH---HMKMQFI 300
             W KTEE MAAEQS  S SNS+VS AES ISTNL L+SG     GNG     HMKM+FI
Sbjct: 241 --WGKTEEAMAAEQSGNSESNSDVSAAESVISTNLCLSSGW----GNGRRRQDHMKMEFI 254

Query: 301 DFLGVGAA 304
           DFLGVGA+
Sbjct: 301 DFLGVGAS 254

[Close]

BLAST of CmoCh06G000610 vs. ExPASy TrEMBL
Match: A0A6J1F735 (transcription factor MYB56-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441460 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 2.2e-86
Identity = 199/311 (63.99%), Postives = 210/311 (67.52%), Query Frame = 0


Query: 1   MNLRCFNDAFQTHGLFQNVALM---PPPPPASLDLSPPSHGGESGRSNCEDREKQEEDGK 60
           MNL  FN AF  +GL QN ALM   PPPPP  L L PP          C D        K
Sbjct: 1   MNLPPFNHAFPGNGLLQNPALMPPPPPPPPLPLPLPPP--------LPCTDGTAIVT--K 60

Query: 61  TNGARRRTKLCARGHWRPAEDAKLKELVAHYGPQNWNMIAENLRGRSGKSCRLRWFNQLD 120
            N   R TKLCARGHWRPAEDAKLKELVAHYGPQNWN+IAENLRGRSGKSCRLRWFNQLD
Sbjct: 61  NNAPHRHTKLCARGHWRPAEDAKLKELVAHYGPQNWNLIAENLRGRSGKSCRLRWFNQLD 120

Query: 121 PRINRKAFNEEEEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKRRQYSNL 180
           PRINR AFNEEEEERL+TAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARK+      
Sbjct: 121 PRINRAAFNEEEEERLVTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKQ------ 180

Query: 181 YRRSSRKAFHKHNVSSESTISSTVDESPASASASASASASAPAPAPAPRWCSRKGVAADV 240
            RRS RK F K+NVS ESTISST   S AS                  RWC        +
Sbjct: 181 -RRSLRKIFQKNNVSGESTISSTASTSAAS------------------RWC------GGI 240

Query: 241 GKIGCWEKTEEVMAAEQS--SGSNSEVSGAESEISTNLSLASGRESMNGNGAH---HMKM 300
           GK+  W KTEE M AEQS  S SNS+VS AES ISTNL L+SG     GNG     HMKM
Sbjct: 241 GKV--WGKTEEAMTAEQSGNSESNSDVSAAESVISTNLCLSSGW----GNGRRRQDHMKM 264

Query: 301 QFIDFLGVGAA 304
           +FIDFLGVGA+
Sbjct: 301 EFIDFLGVGAS 264

[Close]

BLAST of CmoCh06G000610 vs. ExPASy TrEMBL
Match: A0A1S3B821 (transcription factor MYB44 OS=Cucumis melo OX=3656 GN=LOC103486816 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 1.1e-85
Identity = 203/366 (55.46%), Postives = 234/366 (63.93%), Query Frame = 0


Query: 1   MNLR-CFNDAFQ--THGLFQNVALMPPPPPASLDLSPPSHG-------------GESGRS 60
           MNL   FN A Q  T  L  NV  +PPPPP  L   PP+ G             G++ + 
Sbjct: 1   MNLHYSFNHALQPPTSMLLNNVPFIPPPPPPPL---PPTLGDHLPFPTSWEIGKGDARQI 60

Query: 61  NCEDREKQEE-------------DG-KTNGARRRTKLCARGHWRPAEDAKLKELVAHYGP 120
           + E+ E+ ++             DG K +GARR TKLCARGHWRPAED KLKELVAHYGP
Sbjct: 61  HSEEEERDDDNDNDGNVLVTYRNDGPKNSGARRHTKLCARGHWRPAEDTKLKELVAHYGP 120

Query: 121 QNWNMIAENLRGRSGKSCRLRWFNQLDPRINRKAFNEEEEERLLTAHRLYGNKWAMIARL 180
           QNWN+IAENL GRSGKSCRLRWFNQLDP+INRKAFNEEEEERLLTAHRLYGNKWAMIARL
Sbjct: 121 QNWNLIAENLHGRSGKSCRLRWFNQLDPKINRKAFNEEEEERLLTAHRLYGNKWAMIARL 180

Query: 181 FPGRTDNAVKNHWHVIMARKRRQYSNLYRRSSR--------------------------- 240
           FPGRTDNAVKNHWHVIMARK RQ+SNLYRRS+R                           
Sbjct: 181 FPGRTDNAVKNHWHVIMARKHRQHSNLYRRSTRKPLPPPPPPPPPPPHDPSGLNVDENLD 240

Query: 241 -KAFHKHNVSSESTISSTVDESPASASAS-----ASASASAPAPAPAPRWCSRKGVAADV 300
            K F KHNVSSES+ISSTVDES AS S +     +++S+   A  P PRWC+++G  ++ 
Sbjct: 241 VKGFTKHNVSSESSISSTVDESAASPSTATHLSLSNSSSLCIALHPTPRWCNKRG--SET 300

Query: 301 GKIGCWEKTEEVMAAEQSSGSNSEVSGAESEISTNLSLASGRESMNGNGAHHMKMQFIDF 304
           GK          +        NSE + AES ISTNLSL S  E+ +    HHMKMQFIDF
Sbjct: 301 GK----------LRYRADKSRNSESNSAESVISTNLSLGSSWENNSNGQHHHMKMQFIDF 351

[Close]

BLAST of CmoCh06G000610 vs. TAIR 10
Match: AT1G26780.1 (myb domain protein 117 )

HSP 1 Score: 209.1 bits (531), Expect = 4.8e-54
Identity = 101/147 (68.71%), Postives = 118/147 (80.27%), Query Frame = 0


Query: 36  SHGGESGRSNCEDREKQEEDGKTNGARRRTK--LCARGHWRPAEDAKLKELVAHYGPQNW 95
           S+      SN E  +K+  D   + +   +K  +  RGHWRPAED KLKELV+ YGPQNW
Sbjct: 62  SNNNNPNFSNSESGKKETTDSGQSWSSSSSKPSVLGRGHWRPAEDVKLKELVSIYGPQNW 121

Query: 96  NMIAENLRGRSGKSCRLRWFNQLDPRINRKAFNEEEEERLLTAHRLYGNKWAMIARLFPG 155
           N+IAE L+GRSGKSCRLRWFNQLDPRINR+AF EEEEERL+ AHRLYGNKWAMIARLFPG
Sbjct: 122 NLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPG 181

Query: 156 RTDNAVKNHWHVIMARKRRQYSNLYRR 181
           RTDN+VKNHWHV+MARK R++S+ YRR
Sbjct: 182 RTDNSVKNHWHVVMARKYREHSSAYRR 208

[Close]

BLAST of CmoCh06G000610 vs. TAIR 10
Match: AT1G26780.2 (myb domain protein 117 )

HSP 1 Score: 209.1 bits (531), Expect = 4.8e-54
Identity = 101/147 (68.71%), Postives = 118/147 (80.27%), Query Frame = 0


Query: 36  SHGGESGRSNCEDREKQEEDGKTNGARRRTK--LCARGHWRPAEDAKLKELVAHYGPQNW 95
           S+      SN E  +K+  D   + +   +K  +  RGHWRPAED KLKELV+ YGPQNW
Sbjct: 62  SNNNNPNFSNSESGKKETTDSGQSWSSSSSKPSVLGRGHWRPAEDVKLKELVSIYGPQNW 121

Query: 96  NMIAENLRGRSGKSCRLRWFNQLDPRINRKAFNEEEEERLLTAHRLYGNKWAMIARLFPG 155
           N+IAE L+GRSGKSCRLRWFNQLDPRINR+AF EEEEERL+ AHRLYGNKWAMIARLFPG
Sbjct: 122 NLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPG 181

Query: 156 RTDNAVKNHWHVIMARKRRQYSNLYRR 181
           RTDN+VKNHWHV+MARK R++S+ YRR
Sbjct: 182 RTDNSVKNHWHVVMARKYREHSSAYRR 208

[Close]

BLAST of CmoCh06G000610 vs. TAIR 10
Match: AT1G69560.1 (myb domain protein 105 )

HSP 1 Score: 200.7 bits (509), Expect = 1.7e-51
Identity = 101/146 (69.18%), Postives = 116/146 (79.45%), Query Frame = 0


Query: 69  ARGHWRPAEDAKLKELVAHYGPQNWNMIAENLRGRSGKSCRLRWFNQLDPRINRKAFNEE 128
           +RGHWRPAED KLKELVA YGPQNWN+IAE L+GRSGKSCRLRWFNQLDPRINR+AF EE
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 129 EEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKRRQYSNLYRRSSRKAFHK 188
           EEERL+ AHRLYGNKWAMIARLFPGRTDN+VKNHWHVIMARK R+ S+ YRR       K
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSYRRRKTMVSLK 225

Query: 189 HNVSSESTISSTVDESPASASASASA 215
             ++    I +  D +  + +  AS+
Sbjct: 226 PLINPNPHIFNDFDPTRLALTHLASS 251

[Close]

BLAST of CmoCh06G000610 vs. TAIR 10
Match: AT1G73410.1 (myb domain protein 54 )

HSP 1 Score: 192.6 bits (488), Expect = 4.7e-49
Identity = 86/109 (78.90%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 67  LCARGHWRPAEDAKLKELVAHYGPQNWNMIAENLRGRSGKSCRLRWFNQLDPRINRKAFN 126
           +C+RGHWRPAED KLK+LV  YGP NWN IA  L GRSGKSCRLRWFNQLDPRINR  F 
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 127 EEEEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKRRQYS 176
           EEEEERLL AHR++GN+W++IARLFPGRTDNAVKNHWHVIMAR+ RQ S
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTS 111

[Close]

BLAST of CmoCh06G000610 vs. TAIR 10
Match: AT3G29020.1 (myb domain protein 110 )

HSP 1 Score: 191.8 bits (486), Expect = 7.9e-49
Identity = 89/143 (62.24%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 50  EKQEEDGKTNGARRR--TKLCARGHWRPAEDAKLKELVAHYGPQNWNMIAENLRGRSGKS 109
           +K+ +D KT   +++  +++C+RGHWR +ED +L ELV+ YGPQNWN IAE+++GR+GKS
Sbjct: 43  QKKSDDLKTKKKKKQSVSRVCSRGHWRISEDTQLMELVSVYGPQNWNHIAESMQGRTGKS 102

Query: 110 CRLRWFNQLDPRINRKAFNEEEEERLLTAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIM 169
           CRLRWFNQLDPRIN++AF++EEEERLL AHR +GNKWAMIA+LF GRTDNA+KNHWHV+M
Sbjct: 103 CRLRWFNQLDPRINKRAFSDEEEERLLAAHRAFGNKWAMIAKLFNGRTDNALKNHWHVLM 162

Query: 170 ARKRRQYSNLYRRSSRKAFHKHN 191
           ARK RQ S+ Y +    + H+ N
Sbjct: 163 ARKMRQQSSSYVQRFNGSAHESN 185

The following BLAST results are available for this feature:

BLAST of CmoCh06G000610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5NBM8	1.5e-55	59.31	Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV...	[more]
Q9LQX5	6.8e-53	68.71	Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1	[more]
Q9SEZ4	2.4e-50	69.18	Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1	[more]
Q9FX36	6.6e-48	78.90	Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1	[more]
Q6R0C4	3.3e-47	73.68	Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1	[more]

BLAST of CmoCh06G000610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZ69	1.9e-167	100.00	transcription factor CSA-like OS=Cucurbita moschata OX=3662 GN=LOC111458809 PE=4...	[more]
A0A6J1I8Z9	2.3e-157	94.39	transcription factor CSA-like OS=Cucurbita maxima OX=3661 GN=LOC111470258 PE=4 S...	[more]
A0A6J1J4P4	1.3e-86	64.61	transcription factor MYB56-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1F735	2.2e-86	63.99	transcription factor MYB56-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A1S3B821	1.1e-85	55.46	transcription factor MYB44 OS=Cucumis melo OX=3656 GN=LOC103486816 PE=4 SV=1	[more]

BLAST of CmoCh06G000610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26780.1	4.8e-54	68.71	myb domain protein 117	[more]
AT1G26780.2	4.8e-54	68.71	myb domain protein 117	[more]
AT1G69560.1	1.7e-51	69.18	myb domain protein 105	[more]
AT1G73410.1	4.7e-49	78.90	myb domain protein 54	[more]
AT3G29020.1	7.9e-49	62.24	myb domain protein 110	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 69..118 e-value: 1.8E-13 score: 60.7 coord: 121..169 e-value: 1.1E-14 score: 64.7
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 117..167 score: 9.488739
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 70..116 score: 10.475793
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 73..114 e-value: 3.30513E-12 score: 58.3558
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 124..164 e-value: 5.34502E-11 score: 54.889
None	No IPR available	GENE3D	1.10.10.60		coord: 70..121 e-value: 1.9E-22 score: 80.9
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 73..133 e-value: 8.3E-15 score: 54.8
None	No IPR available	GENE3D	1.10.10.60		coord: 123..196 e-value: 1.1E-17 score: 65.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..271
None	No IPR available	PANTHER	PTHR45614:SF176	OS08G0435700 PROTEIN	coord: 44..302
None	No IPR available	PANTHER	PTHR45614	MYB PROTEIN-RELATED	coord: 44..302
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 70..116 score: 18.960613
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 117..171 score: 25.245493
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 70..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000610.1	CmoCh06G000610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated