CmoCh06G000600 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	zinc finger protein VAR3, chloroplastic
Location	Cmo_Chr06: 371499 .. 376841 (+)
RNA-Seq Expression	CmoCh06G000600
Synteny	CmoCh06G000600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCGTGGTTCTATCTTCACCGTAGGGTTTATCTCCGATTCCACTCGCCACCGTTTCTCTCTGCCGCAATGGGCGGAGCCACCAGGTTCTTCGTCCTCCTATCCACTCCTCTTCCTCTCATTCACCACCACCGCCGCCCTTCCTTTCTCCGCCTCGCCTCTCACTACCACAACTTCTTCCGATCTTCTCTTAAGCCCAGAAACAGATTCTTATCCCCTTCCTTTCCCCTAATTAGAGCCTCTCGCCATGTCCATTCCCAGGTCTCCACTCCAGGGGATGAGTTCGGGAATTTTGAAGAATCTGGGTCCGTCAATGGCGTGTTTTCTCCGGATTCTTATATTTGGCGAGAATGGTCCAATTTCCTCGGGAGCCTCGACTCCGGTGGCTATTTTGGTAGTCCGGGTTCTGGGAATGAGTTCGTCGCTGTTCAGGAGCTGCCAGCTGAGTTTGTGAATGCGGCTAATGCGTGCTTGGCATTTTCCCGCGGCCGTGAACATCTCTTAGGGTTCGTTTTGTGCTCTGTATACTAAAAGGAAGCCAATTTGTTATCGATCATTACCTTCTTGTATTTGTTTATTTATTTATTTTTACTGTGGCAGATTGCTTCCTAGGAGGGATATTGAGGTGTTGGTTGAAAGCGTGAACCCATGTCTGTTCAGAGACGGGGATGCTTCATTGAGGAAGATGAAGTTGTTCTTACAAGGCGATGAAACTCAGGTAAGTATGGATTCCAGATTAGTATCTGTTAGTTCTTCATAATTGCTTGTGTTTGTTTCAGAAGTGTTTTAGAGTGCTCTTTTGATCTCAGGGGGCTATATTAACATTGACACTATCTAAGTGACCAAATAACACATCAAACTAAGGGAGTCTTGGATAAAAATGATAATATATTTTTTTAAGTGGAAGTTTTAATAAATGTGTCTTTGTTGTGTTCATATCCTAGATAAATGACGTGTCACAATGTACATGTCATGTCGTATCCGTGTCTCGTATCCATATCCATATCTTTTCTTATTAGGCTCCACCAAGTACCACACCCCTAGCTCATGGATCTCATAGTTGTCTATGCGTCCTATAACTAGTCACAAGCTTAATGGATGCAATTATCTATCATGTTCATGATTAGTTCTAATGTTTGTATGCAAGAGGAGAAGGGATGACTATATTCTTGGAACAAGTACAAAGTGAAATGTTACTGGAGTTAAGATGACGAAAGCAGAGATTAACATGATGACGTGTTGGTTCATCAATTTTATGATTACTGAGACAGGGAAGAAGTTCCTGCCCTGTTTTTTATATGAATTTGCAATGGAAAATTTGGATGCAAACAAGGAAACATTTGATGATCTAGGAAATACCAGTCTTTTGAAATTGAAGGTGGTTACGTGACTGGAGGCAAGGGGAGATAGCAGTGACCAAGTATTGCAGTCCCTTACTCACTTACGGAAACAATTAGGTCTCTATGAGATTTAATAATACGGAATGCACCAATGACATTTCATGGTACCAAAAGTTTCAAATTCCTTCTTGGATAAGTTTGAAGATACACTGTAGCAATCAAGCCCCTAGAAATGAAGAAGGATGAAAGACACTATACTGAGAAGAAAGTCGAGTACAAACTCTTCTAACTCAAGTCCTATTAATTTGATTTTAATTTCTCAAATTAATGTTCAATTTAATGCAAATAACTGTCCTTGAAAAGAAAGACCATAATGTGTACACCGTGAGAAATTTGTGATACCAAAGTCTGTTGAACTTAGTACACTGCAAGATATGGGGAGCACTTGAGAATACGAACCTTTATAATAACTCTGTTTCTTGCATTGATTGCAACTTGGGACATTTTTGTAACCCTTAGGCTTTGGGTTGGGAGACAAGGATACCTTGCCATGGTTAAAAGGGTTTTTACTAAGGAAGCAAAATGTGGTTGGAAGCGCACAGAGGAAATGAGTGTACTGTTTTTGTTTGTTTTTTAAAGTGTCGTAGCCTTTTTAGCTGTGATTAGTTCATGTTTTGACTTTATTGTTTACAAATATCCAACTTTAATTAGGTTTATATTTCTGCCTCCCATATAGCAATGGATTAATTCTTTCATCAAGAAGAATTTCTATTTCCATTTTTACTTCATTTATTCCAGCCCCTGATTTTGCGAGTGTTAAAACCACTTCACAATATTCACTTGTGCTATCACCATTGGTAGGTTTTGGATTCTGATAAAGCAAGGACGATTGATTTATTCAAATTTATCTTGAGCTATGCCAGAAACCCGACTGTTTCTTCAGAAAGTAATCTGTACAGTAGAGATCAGGTAGAATCATCTATGAGGAATCTGTTAAGTGAAATATGCAAGCTTTGTTTTAGCAATCCAGATCCGAAGCTTTTGGAGACAGACAATCAATTTTCTGACAAATATAGCCAATCACGTGGGCCGTATGGGCCAAAAGTTGAAATGAAAAGAGGGGACTGGATTTGTCCAAGGTAGATATTCATTTATTTTGCTACCTTTTATACTGCTATGGTTGTATCTTCAAATGTTTGTGCCTCTTCTGGTTGTATCTTTGCTGTATTCTGATCTAGCACGTAAAGTATGTTTGTGCCCTACTGAGATAATCTGTTTTGGATATTTACGAGTGTAGATGTAGTTTCATGAACTTCGCAAGAAATGTGAAATGCCTTGAATGCGAGGAGGCCCGACCAAAGCGACAGCTGATTGGTGGAGAATGGGAATGCCCTCAGTACGGAGTGATTCTCTACTTTCTCAGACTTGATACATCTTTCCATTTCCCCTGTTCTGAATGACTAAATTAAACTTTCATTCTGATTACTTTGGCAGATGTGATTTTTTCAATTATGGGAGGAATACAGTGTGCTTAAGGTGTGATTGCAAAAGGCCAGGGCCTCCATCTCTCAGTAACATTAACATAAATTCTGGTTTAGGGAATGACAATGGAAGTCACACAATTAAGGTTGATATCGATAGTAAGTTGGCTGCAAATGAAGAGAAGGCTCAGCGCTGGTTTAGTAAGATTTCTCAGCTGGACAGTACTTCTGATTCGGGCTCCTCAATAACAGATGAAGATTTCCCTGAAATAATGCCATTGAGAAAAGGAGTTAACAGATTTGTTGTGAGCACGAGGAAGACGCCTCTGGAGAGGAGGTTGGCTAATGCTCAATACAGAAGAAATTTGGGCAACGATGGAGTTCCAGAAAATAACAGCAGTGAACTGTCTGCTTCTAACAATTCTCTTGACAAAACAACAAGCCATGATGACATTCTTGGTCGCCTATCCACTAATTCTCAATCCACGAATTTTGGAAACGAGCAAGGTATTCGTACCAATTATACTTTATCATCCACTTCAGGTTCTTCGCAATATGAGTCCCCGAAAGGAGGTAATTCCAGTTATGTTCCATTTGTTCCATTACCCCCAGATATGTTTGCGAAAAAGCCTAAGAATTCAAGCATGGAGAGTGAGGTAGTTGGTACTGATAATAACAAATCCCTTCCATCAAGCTCTAATGAGTGGACAGGCAGTACTTCCCAGAGCAATGGATTGAACGAAGTAGGAGATATTCCTTCTCCACCGCAGAATCCGACTCAGAAAATTAATGAAGGGAAGGAGGAAACTGAAAAATCTGAGAGATGGTTTAAAAGGGTTGCCGAACTGCACAACGTGACAGATCTTCCTAGTGCAATTTCTGATGAAGACTTCCCTGAGATCATGCCAATGCGCAAGGGAGAAAATAGATTTGTTGTCAGTAAGAAGAAAGACCGCTCTTTAACGTCTCCAGCTTATAAGAGGCGTGCTGCCATGGAGCAAGCTGGCAGTTCCAACTTTGTCCCCTTTGTTCCTTTCCCACCGGACTATTTTGCAAAAAAAGATAAGGCCTTGTCAGATGATTCAAATAGTCAAGTGACTGAGACCTTCTCAGATGATTCAAATGGTCAAGTGACTGAAGCTCAGTCATACGACACTAGCATTGGTATCGATGATAGAAGTAACTCTCAACAGTCTGATAATCTAGAAACTCAAGCAGGCAGGTTCAACTCAGAACTCCATACACGGAATTCCAGTCGGAGCGATGAAGCTACAGCATACGGAGTACCCAACATTCAAAGTCTAGACACAAATTTGGTTAGCTCTCAACCTGGTCACAAGAATGTGGCGAATAACAACACAAGTGTAGCGGGAAATCCGTCTCCAGCATCCGAGATGCCAAACGTAAGAGAGAAATGGAGTGGAAAAAGTTTGGAGGGTTCAGCGGTCACTGAACCAGATCCATTGGACATGTCAGAGGAGGCTAAAGTGCAAAGATGGTTCCGTCGTGTTGCTCAGATCAAGGACATCTCTGAGCTAAGTCAGATTCCGGACGAAGATTTTCCATCGATCATGCCAATGCGCAAAGGTGTCAACAGGTTTGTAGTCAGCAAGAGGAAAACTCCATTGGAAAGAAGGTTAACATCACCTCAATACAGAAGAAATCTGCCCATTGTTAGTTCAGACCCACCAAAGCGAGAAAATGATGGCAGTTAGAAACACCCAGCGTTCTTCAATTTCTTTCATAAACTGAGATTATTGGTATTGGTTTGTTCTTTACCGTGAAAAAGAAAGGAACTTCAAATATGGCTTTTATAACTTAAAATCTTGGTTATTGATTAAATTGAATTGAATAGTAGTTCAACCACATAATTGATAAGTATTGTGTGCAAGGGAAGAAATGGCTGGACAAATTCCTATCAGGCCTCCTTGCTCTTGTAAATGAGCTATCTGAGATGCATTATGGTAGGAATGTTTTCTGATGGATTGGATTGGTTTGGTTGGATTCTTTGTTAGATGATTCGTGGTTAGGTGTTGAATAGATGGTCTTATTGGGTGTTTGTCGCGTGTTTATGGGATGGAGAGGGGGAATCAGAAGCTTTATGTTGCTGTGTGAGAGCCTCCACGGGGTAAGTTTCACACGAGTTTTGTGTCGTTTCTCGATTGCTATTGATTTTAGAAAGGGATATTGCAATGATTTTGGTATGGATTTGAGTAATACACCCCCTTGATCAGGACCGAACCAATGATTTTGGTTTCAGGACGAATGATGATGAAATTGAAACTAATTGGGTGTAAATAGAAGAACCGATTGAAAAGTAGGGAATGATTCAAGTGGGAGTACAACATGTCTAGTAGGAATGATTCAAGTCATAAATCCCGAGATTTCAACGTCTCTATGCCCAAAATGTTGCCACAAAGCCGGGGAGTTTTCATCCTTAACATCTTAACGTCGCAGTAGAGTATCTCGACACTATCCTTCATTCGCTTAGGTGTCTCAACACTATCTTATTTTCTATATATA

mRNA sequence

TCTCGTGGTTCTATCTTCACCGTAGGGTTTATCTCCGATTCCACTCGCCACCGTTTCTCTCTGCCGCAATGGGCGGAGCCACCAGGTTCTTCGTCCTCCTATCCACTCCTCTTCCTCTCATTCACCACCACCGCCGCCCTTCCTTTCTCCGCCTCGCCTCTCACTACCACAACTTCTTCCGATCTTCTCTTAAGCCCAGAAACAGATTCTTATCCCCTTCCTTTCCCCTAATTAGAGCCTCTCGCCATGTCCATTCCCAGGTCTCCACTCCAGGGGATGAGTTCGGGAATTTTGAAGAATCTGGGTCCGTCAATGGCGTGTTTTCTCCGGATTCTTATATTTGGCGAGAATGGTCCAATTTCCTCGGGAGCCTCGACTCCGGTGGCTATTTTGGTAGTCCGGGTTCTGGGAATGAGTTCGTCGCTGTTCAGGAGCTGCCAGCTGAGTTTGTGAATGCGGCTAATGCGTGCTTGGCATTTTCCCGCGGCCGTGAACATCTCTTAGGATTGCTTCCTAGGAGGGATATTGAGGTGTTGGTTGAAAGCGTGAACCCATGTCTGTTCAGAGACGGGGATGCTTCATTGAGGAAGATGAAGTTGTTCTTACAAGGCGATGAAACTCAGGTTTTGGATTCTGATAAAGCAAGGACGATTGATTTATTCAAATTTATCTTGAGCTATGCCAGAAACCCGACTGTTTCTTCAGAAAGTAATCTGTACAGTAGAGATCAGGTAGAATCATCTATGAGGAATCTGTTAAGTGAAATATGCAAGCTTTGTTTTAGCAATCCAGATCCGAAGCTTTTGGAGACAGACAATCAATTTTCTGACAAATATAGCCAATCACGTGGGCCGTATGGGCCAAAAGTTGAAATGAAAAGAGGGGACTGGATTTGTCCAAGATGTAGTTTCATGAACTTCGCAAGAAATGTGAAATGCCTTGAATGCGAGGAGGCCCGACCAAAGCGACAGCTGATTGGTGGAGAATGGGAATGCCCTCAATGTGATTTTTTCAATTATGGGAGGAATACAGTGTGCTTAAGGTGTGATTGCAAAAGGCCAGGGCCTCCATCTCTCAGTAACATTAACATAAATTCTGGTTTAGGGAATGACAATGGAAGTCACACAATTAAGGTTGATATCGATAGTAAGTTGGCTGCAAATGAAGAGAAGGCTCAGCGCTGGTTTAGTAAGATTTCTCAGCTGGACAGTACTTCTGATTCGGGCTCCTCAATAACAGATGAAGATTTCCCTGAAATAATGCCATTGAGAAAAGGAGTTAACAGATTTGTTGTGAGCACGAGGAAGACGCCTCTGGAGAGGAGGTTGGCTAATGCTCAATACAGAAGAAATTTGGGCAACGATGGAGTTCCAGAAAATAACAGCAGTGAACTGTCTGCTTCTAACAATTCTCTTGACAAAACAACAAGCCATGATGACATTCTTGGTCGCCTATCCACTAATTCTCAATCCACGAATTTTGGAAACGAGCAAGGTATTCGTACCAATTATACTTTATCATCCACTTCAGGTTCTTCGCAATATGAGTCCCCGAAAGGAGGTAATTCCAGTTATGTTCCATTTGTTCCATTACCCCCAGATATGTTTGCGAAAAAGCCTAAGAATTCAAGCATGGAGAGTGAGGTAGTTGGTACTGATAATAACAAATCCCTTCCATCAAGCTCTAATGAGTGGACAGGCAGTACTTCCCAGAGCAATGGATTGAACGAAGTAGGAGATATTCCTTCTCCACCGCAGAATCCGACTCAGAAAATTAATGAAGGGAAGGAGGAAACTGAAAAATCTGAGAGATGGTTTAAAAGGGTTGCCGAACTGCACAACGTGACAGATCTTCCTAGTGCAATTTCTGATGAAGACTTCCCTGAGATCATGCCAATGCGCAAGGGAGAAAATAGATTTGTTGTCAGTAAGAAGAAAGACCGCTCTTTAACGTCTCCAGCTTATAAGAGGCGTGCTGCCATGGAGCAAGCTGGCAGTTCCAACTTTGTCCCCTTTGTTCCTTTCCCACCGGACTATTTTGCAAAAAAAGATAAGGCCTTGTCAGATGATTCAAATAGTCAAGTGACTGAGACCTTCTCAGATGATTCAAATGGTCAAGTGACTGAAGCTCAGTCATACGACACTAGCATTGGTATCGATGATAGAAGTAACTCTCAACAGTCTGATAATCTAGAAACTCAAGCAGGCAGGTTCAACTCAGAACTCCATACACGGAATTCCAGTCGGAGCGATGAAGCTACAGCATACGGAGTACCCAACATTCAAAGTCTAGACACAAATTTGGTTAGCTCTCAACCTGGTCACAAGAATGTGGCGAATAACAACACAAGTGTAGCGGGAAATCCGTCTCCAGCATCCGAGATGCCAAACGTAAGAGAGAAATGGAGTGGAAAAAGTTTGGAGGGTTCAGCGGTCACTGAACCAGATCCATTGGACATGTCAGAGGAGGCTAAAGTGCAAAGATGGTTCCGTCGTGTTGCTCAGATCAAGGACATCTCTGAGCTAAGTCAGATTCCGGACGAAGATTTTCCATCGATCATGCCAATGCGCAAAGGTGTCAACAGGTTTGTAGTCAGCAAGAGGAAAACTCCATTGGAAAGAAGGTTAACATCACCTCAATACAGAAGAAATCTGCCCATTGTTAGTTCAGACCCACCAAAGCGAGAAAATGATGGCAGTTAGAAACACCCAGCGTTCTTCAATTTCTTTCATAAACTGAGATTATTGGTATTGGTTTGTTCTTTACCGTGAAAAAGAAAGGAACTTCAAATATGGCTTTTATAACTTAAAATCTTGGTTATTGATTAAATTGAATTGAATAGTAGTTCAACCACATAATTGATAAGTATTGTGTGCAAGGGAAGAAATGGCTGGACAAATTCCTATCAGGCCTCCTTGCTCTTGTAAATGAGCTATCTGAGATGCATTATGGTAGGAATGTTTTCTGATGGATTGGATTGGTTTGGTTGGATTCTTTGTTAGATGATTCGTGGTTAGGTGTTGAATAGATGGTCTTATTGGGTGTTTGTCGCGTGTTTATGGGATGGAGAGGGGGAATCAGAAGCTTTATGTTGCTGTGTGAGAGCCTCCACGGGGTAAGTTTCACACGAGTTTTGTGTCGTTTCTCGATTGCTATTGATTTTAGAAAGGGATATTGCAATGATTTTGGTATGGATTTGAGTAATACACCCCCTTGATCAGGACCGAACCAATGATTTTGGTTTCAGGACGAATGATGATGAAATTGAAACTAATTGGGTGTAAATAGAAGAACCGATTGAAAAGTAGGGAATGATTCAAGTGGGAGTACAACATGTCTAGTAGGAATGATTCAAGTCATAAATCCCGAGATTTCAACGTCTCTATGCCCAAAATGTTGCCACAAAGCCGGGGAGTTTTCATCCTTAACATCTTAACGTCGCAGTAGAGTATCTCGACACTATCCTTCATTCGCTTAGGTGTCTCAACACTATCTTATTTTCTATATATA

Coding sequence (CDS)

ATGGGCGGAGCCACCAGGTTCTTCGTCCTCCTATCCACTCCTCTTCCTCTCATTCACCACCACCGCCGCCCTTCCTTTCTCCGCCTCGCCTCTCACTACCACAACTTCTTCCGATCTTCTCTTAAGCCCAGAAACAGATTCTTATCCCCTTCCTTTCCCCTAATTAGAGCCTCTCGCCATGTCCATTCCCAGGTCTCCACTCCAGGGGATGAGTTCGGGAATTTTGAAGAATCTGGGTCCGTCAATGGCGTGTTTTCTCCGGATTCTTATATTTGGCGAGAATGGTCCAATTTCCTCGGGAGCCTCGACTCCGGTGGCTATTTTGGTAGTCCGGGTTCTGGGAATGAGTTCGTCGCTGTTCAGGAGCTGCCAGCTGAGTTTGTGAATGCGGCTAATGCGTGCTTGGCATTTTCCCGCGGCCGTGAACATCTCTTAGGATTGCTTCCTAGGAGGGATATTGAGGTGTTGGTTGAAAGCGTGAACCCATGTCTGTTCAGAGACGGGGATGCTTCATTGAGGAAGATGAAGTTGTTCTTACAAGGCGATGAAACTCAGGTTTTGGATTCTGATAAAGCAAGGACGATTGATTTATTCAAATTTATCTTGAGCTATGCCAGAAACCCGACTGTTTCTTCAGAAAGTAATCTGTACAGTAGAGATCAGGTAGAATCATCTATGAGGAATCTGTTAAGTGAAATATGCAAGCTTTGTTTTAGCAATCCAGATCCGAAGCTTTTGGAGACAGACAATCAATTTTCTGACAAATATAGCCAATCACGTGGGCCGTATGGGCCAAAAGTTGAAATGAAAAGAGGGGACTGGATTTGTCCAAGATGTAGTTTCATGAACTTCGCAAGAAATGTGAAATGCCTTGAATGCGAGGAGGCCCGACCAAAGCGACAGCTGATTGGTGGAGAATGGGAATGCCCTCAATGTGATTTTTTCAATTATGGGAGGAATACAGTGTGCTTAAGGTGTGATTGCAAAAGGCCAGGGCCTCCATCTCTCAGTAACATTAACATAAATTCTGGTTTAGGGAATGACAATGGAAGTCACACAATTAAGGTTGATATCGATAGTAAGTTGGCTGCAAATGAAGAGAAGGCTCAGCGCTGGTTTAGTAAGATTTCTCAGCTGGACAGTACTTCTGATTCGGGCTCCTCAATAACAGATGAAGATTTCCCTGAAATAATGCCATTGAGAAAAGGAGTTAACAGATTTGTTGTGAGCACGAGGAAGACGCCTCTGGAGAGGAGGTTGGCTAATGCTCAATACAGAAGAAATTTGGGCAACGATGGAGTTCCAGAAAATAACAGCAGTGAACTGTCTGCTTCTAACAATTCTCTTGACAAAACAACAAGCCATGATGACATTCTTGGTCGCCTATCCACTAATTCTCAATCCACGAATTTTGGAAACGAGCAAGGTATTCGTACCAATTATACTTTATCATCCACTTCAGGTTCTTCGCAATATGAGTCCCCGAAAGGAGGTAATTCCAGTTATGTTCCATTTGTTCCATTACCCCCAGATATGTTTGCGAAAAAGCCTAAGAATTCAAGCATGGAGAGTGAGGTAGTTGGTACTGATAATAACAAATCCCTTCCATCAAGCTCTAATGAGTGGACAGGCAGTACTTCCCAGAGCAATGGATTGAACGAAGTAGGAGATATTCCTTCTCCACCGCAGAATCCGACTCAGAAAATTAATGAAGGGAAGGAGGAAACTGAAAAATCTGAGAGATGGTTTAAAAGGGTTGCCGAACTGCACAACGTGACAGATCTTCCTAGTGCAATTTCTGATGAAGACTTCCCTGAGATCATGCCAATGCGCAAGGGAGAAAATAGATTTGTTGTCAGTAAGAAGAAAGACCGCTCTTTAACGTCTCCAGCTTATAAGAGGCGTGCTGCCATGGAGCAAGCTGGCAGTTCCAACTTTGTCCCCTTTGTTCCTTTCCCACCGGACTATTTTGCAAAAAAAGATAAGGCCTTGTCAGATGATTCAAATAGTCAAGTGACTGAGACCTTCTCAGATGATTCAAATGGTCAAGTGACTGAAGCTCAGTCATACGACACTAGCATTGGTATCGATGATAGAAGTAACTCTCAACAGTCTGATAATCTAGAAACTCAAGCAGGCAGGTTCAACTCAGAACTCCATACACGGAATTCCAGTCGGAGCGATGAAGCTACAGCATACGGAGTACCCAACATTCAAAGTCTAGACACAAATTTGGTTAGCTCTCAACCTGGTCACAAGAATGTGGCGAATAACAACACAAGTGTAGCGGGAAATCCGTCTCCAGCATCCGAGATGCCAAACGTAAGAGAGAAATGGAGTGGAAAAAGTTTGGAGGGTTCAGCGGTCACTGAACCAGATCCATTGGACATGTCAGAGGAGGCTAAAGTGCAAAGATGGTTCCGTCGTGTTGCTCAGATCAAGGACATCTCTGAGCTAAGTCAGATTCCGGACGAAGATTTTCCATCGATCATGCCAATGCGCAAAGGTGTCAACAGGTTTGTAGTCAGCAAGAGGAAAACTCCATTGGAAAGAAGGTTAACATCACCTCAATACAGAAGAAATCTGCCCATTGTTAGTTCAGACCCACCAAAGCGAGAAAATGATGGCAGTTAG

Protein sequence

MGGATRFFVLLSTPLPLIHHHRRPSFLRLASHYHNFFRSSLKPRNRFLSPSFPLIRASRHVHSQVSTPGDEFGNFEESGSVNGVFSPDSYIWREWSNFLGSLDSGGYFGSPGSGNEFVAVQELPAEFVNAANACLAFSRGREHLLGLLPRRDIEVLVESVNPCLFRDGDASLRKMKLFLQGDETQVLDSDKARTIDLFKFILSYARNPTVSSESNLYSRDQVESSMRNLLSEICKLCFSNPDPKLLETDNQFSDKYSQSRGPYGPKVEMKRGDWICPRCSFMNFARNVKCLECEEARPKRQLIGGEWECPQCDFFNYGRNTVCLRCDCKRPGPPSLSNININSGLGNDNGSHTIKVDIDSKLAANEEKAQRWFSKISQLDSTSDSGSSITDEDFPEIMPLRKGVNRFVVSTRKTPLERRLANAQYRRNLGNDGVPENNSSELSASNNSLDKTTSHDDILGRLSTNSQSTNFGNEQGIRTNYTLSSTSGSSQYESPKGGNSSYVPFVPLPPDMFAKKPKNSSMESEVVGTDNNKSLPSSSNEWTGSTSQSNGLNEVGDIPSPPQNPTQKINEGKEETEKSERWFKRVAELHNVTDLPSAISDEDFPEIMPMRKGENRFVVSKKKDRSLTSPAYKRRAAMEQAGSSNFVPFVPFPPDYFAKKDKALSDDSNSQVTETFSDDSNGQVTEAQSYDTSIGIDDRSNSQQSDNLETQAGRFNSELHTRNSSRSDEATAYGVPNIQSLDTNLVSSQPGHKNVANNNTSVAGNPSPASEMPNVREKWSGKSLEGSAVTEPDPLDMSEEAKVQRWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDGS

Homology

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BLAST of CmoCh06G000600 vs. ExPASy Swiss-Prot
Match: Q8S9K3 (Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2)

HSP 1 Score: 566.2 bits (1458), Expect = 6.3e-160
Identity = 353/782 (45.14%), Postives = 452/782 (57.80%), Query Frame = 0


Query: 94  EWSNFLGSLDSGGYFGSPG--SGNEFVAVQELPAEFVNAANACLAFSRGREHLLGLLPRR 153
           EW+  L SL   GYF   G  SG E       P E +  A ACLA +R R  LL +L RR
Sbjct: 94  EWTELLQSLSKAGYFSDSGSISGLESEFFPGFPDELLRPALACLALARERPELLEMLSRR 153

Query: 154 DIEVLVESVNPCLFRDGDASLRKMKLFLQGDET---QVLDSDKARTIDLFKFILSYARNP 213
           D+EVLVE+  P LF+ G  SL++M L+L+       +++D +KA T+DL + ILSY  + 
Sbjct: 154 DVEVLVENGKPFLFKTGPDSLKRMSLYLRSGLQGIGKLMDMEKASTVDLMRLILSYVVDV 213

Query: 214 TVSSESNLYSRDQVESSMRNLLSEICKLCFSNPDPKLLET-DNQFSDKYSQSRGPYGPKV 273
             S ES  ++++ +ESS+R+LLS+I K+    P+  + +T  NQ+SD+  Q    +   V
Sbjct: 214 ASSEESKQHNKEIMESSVRSLLSQIAKMSLRPPESNVHDTMQNQYSDRDGQGVRSFQNNV 273

Query: 274 EMKRGDWICPRCSFMNFARNVKCLECEEARPKRQLIGGEWECPQCDFFNYGRNTVCLRCD 333
           EMKRGDWIC RCS MNFARNVKC +C+EARPKRQL G EWECPQCDF+NYGRN  CLRCD
Sbjct: 274 EMKRGDWICSRCSGMNFARNVKCFQCDEARPKRQLTGSEWECPQCDFYNYGRNVACLRCD 333

Query: 334 CKRPGPPSLSNININSGLGNDNGSHTIKVDIDSKLAANEEKAQRWFSKISQLDSTSDSGS 393
           CKRP          +S L + N  ++   +++ +L  NE+KAQRW SK++Q    SD+ S
Sbjct: 334 CKRPR---------DSSLNSANSDYSSDPELERRLVENEKKAQRWLSKVAQ--GGSDANS 393

Query: 394 SITDEDFPEIMPLRKGVNRFVVSTRKTPLERRLANAQYRRNLGNDGVPENNSSELSASNN 453
             TDEDFPEIMPLRKGVNR+VVSTRK PLERRLAN + R  +  DG              
Sbjct: 394 VDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANTENR--VATDG-------------- 453

Query: 454 SLDKTTSHDDILGRLSTNSQSTNFGNEQGIRTNYTLSSTSGSSQYESPKGGNSSYVPFVP 513
             +   S D+ LG  +T S +   G+   + T+ +      S ++ES +G N+ +VPFVP
Sbjct: 454 --NSKRSDDNALGSKTTRSLNEILGSSSSL-TSRSDDKNVSSRRFESSQGINTDFVPFVP 513

Query: 514 LPPDMFAKKPKNSSMESEVVGTDNNKSLPSSSNEWTGSTSQSNGLNEVGDIPSPPQNPTQ 573
           LP DMFAKKPK    E+++   DN +    S           +  N  G         T 
Sbjct: 514 LPSDMFAKKPKE---ETQIGLIDNIQVDGFSGGNQNVYQEDKSDANHSG-------KETD 573

Query: 574 KINEGKEETEKSERWFKRVAELHNVTDLPSAISDEDFPEIMPMRKGENRFVVSKKKDRSL 633
           ++ +   ++E+  RWFKRV ELHNV+DL SAI  E  PE MPMRKGENRFVVS+KKDRSL
Sbjct: 574 RLEKEDHKSEEPARWFKRVTELHNVSDLESAIPQEISPEKMPMRKGENRFVVSRKKDRSL 633

Query: 634 TSPAYKRRAAMEQAGSSNFVPFVPFPPDYFAKKDKALSDDSNSQVTETFSDDSNGQVTEA 693
           TSPAYKR         S+FVPFVPFPPDYFAK                            
Sbjct: 634 TSPAYKR------PEDSDFVPFVPFPPDYFAK---------------------------- 693

Query: 694 QSYDTSIGIDDRSNSQQSDNLETQAGRFNSELHTRNSSRSDEATAYGVPNIQSLDTNLVS 753
                     ++   +  D L   A        T N S+                  +V 
Sbjct: 694 ----------EKQPKESIDTLPAPA--------TENVSQ------------------VVQ 752

Query: 754 SQPGHKNVANNNTSVAGNPSPASEMPNVREKWSGKSLEGSAVTEPDPLDMSEEAKVQRWF 813
            +P   ++  ++T              +R   +GKSLEGS V E D LDMSEEAK +RWF
Sbjct: 754 QEPREPSINKSDTVAV----------KIR---NGKSLEGSLVKESDLLDMSEEAKAERWF 752

Query: 814 RRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSPQYRRNLPIVSS 870
           +RVA+IK+ISELS+IPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTS +++RN  I +S
Sbjct: 814 KRVAEIKNISELSEIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQRHQRNPHITNS 752

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BLAST of CmoCh06G000600 vs. ExPASy Swiss-Prot
Match: Q9JLG8 (Calpain-15 OS=Mus musculus OX=10090 GN=Capn15 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.9e-04
Identity = 27/80 (33.75%), Postives = 34/80 (42.50%), Query Frame = 0


Query: 272 GDWICPRCSFMNFARNVKCLECEEARPKRQL--------IGGEWECPQCDFFNYGRNTVC 331
           G+W C RC+F+N A   +C  CE  R K  L           +W C +C F N+     C
Sbjct: 5   GEWSCARCTFLNPAGQRQCSICEAPRHKPDLDQILRLSVEEQKWPCARCTFRNFLGKEAC 64

Query: 332 LRCDCKR---PGPPSLSNIN 341
             C       PG P L  IN
Sbjct: 65  EVCGFTPEPVPGAPLLPIIN 84

[Close]

BLAST of CmoCh06G000600 vs. ExPASy TrEMBL
Match: A0A6J1FU33 (zinc finger protein VAR3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447301 PE=4 SV=1)

HSP 1 Score: 1741.1 bits (4508), Expect = 0.0e+00
Identity = 877/877 (100.00%), Postives = 877/877 (100.00%), Query Frame = 0


Query: 1   MGGATRFFVLLSTPLPLIHHHRRPSFLRLASHYHNFFRSSLKPRNRFLSPSFPLIRASRH 60
           MGGATRFFVLLSTPLPLIHHHRRPSFLRLASHYHNFFRSSLKPRNRFLSPSFPLIRASRH
Sbjct: 1   MGGATRFFVLLSTPLPLIHHHRRPSFLRLASHYHNFFRSSLKPRNRFLSPSFPLIRASRH 60

Query: 61  VHSQVSTPGDEFGNFEESGSVNGVFSPDSYIWREWSNFLGSLDSGGYFGSPGSGNEFVAV 120
           VHSQVSTPGDEFGNFEESGSVNGVFSPDSYIWREWSNFLGSLDSGGYFGSPGSGNEFVAV
Sbjct: 61  VHSQVSTPGDEFGNFEESGSVNGVFSPDSYIWREWSNFLGSLDSGGYFGSPGSGNEFVAV 120

Query: 121 QELPAEFVNAANACLAFSRGREHLLGLLPRRDIEVLVESVNPCLFRDGDASLRKMKLFLQ 180
           QELPAEFVNAANACLAFSRGREHLLGLLPRRDIEVLVESVNPCLFRDGDASLRKMKLFLQ
Sbjct: 121 QELPAEFVNAANACLAFSRGREHLLGLLPRRDIEVLVESVNPCLFRDGDASLRKMKLFLQ 180

Query: 181 GDETQVLDSDKARTIDLFKFILSYARNPTVSSESNLYSRDQVESSMRNLLSEICKLCFSN 240
           GDETQVLDSDKARTIDLFKFILSYARNPTVSSESNLYSRDQVESSMRNLLSEICKLCFSN
Sbjct: 181 GDETQVLDSDKARTIDLFKFILSYARNPTVSSESNLYSRDQVESSMRNLLSEICKLCFSN 240

Query: 241 PDPKLLETDNQFSDKYSQSRGPYGPKVEMKRGDWICPRCSFMNFARNVKCLECEEARPKR 300
           PDPKLLETDNQFSDKYSQSRGPYGPKVEMKRGDWICPRCSFMNFARNVKCLECEEARPKR
Sbjct: 241 PDPKLLETDNQFSDKYSQSRGPYGPKVEMKRGDWICPRCSFMNFARNVKCLECEEARPKR 300

Query: 301 QLIGGEWECPQCDFFNYGRNTVCLRCDCKRPGPPSLSNININSGLGNDNGSHTIKVDIDS 360
           QLIGGEWECPQCDFFNYGRNTVCLRCDCKRPGPPSLSNININSGLGNDNGSHTIKVDIDS
Sbjct: 301 QLIGGEWECPQCDFFNYGRNTVCLRCDCKRPGPPSLSNININSGLGNDNGSHTIKVDIDS 360

Query: 361 KLAANEEKAQRWFSKISQLDSTSDSGSSITDEDFPEIMPLRKGVNRFVVSTRKTPLERRL 420
           KLAANEEKAQRWFSKISQLDSTSDSGSSITDEDFPEIMPLRKGVNRFVVSTRKTPLERRL
Sbjct: 361 KLAANEEKAQRWFSKISQLDSTSDSGSSITDEDFPEIMPLRKGVNRFVVSTRKTPLERRL 420

Query: 421 ANAQYRRNLGNDGVPENNSSELSASNNSLDKTTSHDDILGRLSTNSQSTNFGNEQGIRTN 480
           ANAQYRRNLGNDGVPENNSSELSASNNSLDKTTSHDDILGRLSTNSQSTNFGNEQGIRTN
Sbjct: 421 ANAQYRRNLGNDGVPENNSSELSASNNSLDKTTSHDDILGRLSTNSQSTNFGNEQGIRTN 480

Query: 481 YTLSSTSGSSQYESPKGGNSSYVPFVPLPPDMFAKKPKNSSMESEVVGTDNNKSLPSSSN 540
           YTLSSTSGSSQYESPKGGNSSYVPFVPLPPDMFAKKPKNSSMESEVVGTDNNKSLPSSSN
Sbjct: 481 YTLSSTSGSSQYESPKGGNSSYVPFVPLPPDMFAKKPKNSSMESEVVGTDNNKSLPSSSN 540

Query: 541 EWTGSTSQSNGLNEVGDIPSPPQNPTQKINEGKEETEKSERWFKRVAELHNVTDLPSAIS 600
           EWTGSTSQSNGLNEVGDIPSPPQNPTQKINEGKEETEKSERWFKRVAELHNVTDLPSAIS
Sbjct: 541 EWTGSTSQSNGLNEVGDIPSPPQNPTQKINEGKEETEKSERWFKRVAELHNVTDLPSAIS 600

Query: 601 DEDFPEIMPMRKGENRFVVSKKKDRSLTSPAYKRRAAMEQAGSSNFVPFVPFPPDYFAKK 660
           DEDFPEIMPMRKGENRFVVSKKKDRSLTSPAYKRRAAMEQAGSSNFVPFVPFPPDYFAKK
Sbjct: 601 DEDFPEIMPMRKGENRFVVSKKKDRSLTSPAYKRRAAMEQAGSSNFVPFVPFPPDYFAKK 660

Query: 661 DKALSDDSNSQVTETFSDDSNGQVTEAQSYDTSIGIDDRSNSQQSDNLETQAGRFNSELH 720
           DKALSDDSNSQVTETFSDDSNGQVTEAQSYDTSIGIDDRSNSQQSDNLETQAGRFNSELH
Sbjct: 661 DKALSDDSNSQVTETFSDDSNGQVTEAQSYDTSIGIDDRSNSQQSDNLETQAGRFNSELH 720

Query: 721 TRNSSRSDEATAYGVPNIQSLDTNLVSSQPGHKNVANNNTSVAGNPSPASEMPNVREKWS 780
           TRNSSRSDEATAYGVPNIQSLDTNLVSSQPGHKNVANNNTSVAGNPSPASEMPNVREKWS
Sbjct: 721 TRNSSRSDEATAYGVPNIQSLDTNLVSSQPGHKNVANNNTSVAGNPSPASEMPNVREKWS 780

Query: 781 GKSLEGSAVTEPDPLDMSEEAKVQRWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRF 840
           GKSLEGSAVTEPDPLDMSEEAKVQRWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRF
Sbjct: 781 GKSLEGSAVTEPDPLDMSEEAKVQRWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRF 840

Query: 841 VVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDGS 878
           VVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDGS
Sbjct: 841 VVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDGS 877

[Close]

BLAST of CmoCh06G000600 vs. ExPASy TrEMBL
Match: A0A6J1I6Q5 (zinc finger protein VAR3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470130 PE=4 SV=1)

HSP 1 Score: 1690.6 bits (4377), Expect = 0.0e+00
Identity = 854/877 (97.38%), Postives = 863/877 (98.40%), Query Frame = 0


Query: 1   MGGATRFFVLLSTPLPLIHHHRRPSFLRLASHYHNFFRSSLKPRNRFLSPSFPLIRASRH 60
           MGGATRFFVLLSTPLPLIHHHRRPSFLRLASHYHNFFRSSL+PRNRFLSPSFPLIRASRH
Sbjct: 1   MGGATRFFVLLSTPLPLIHHHRRPSFLRLASHYHNFFRSSLQPRNRFLSPSFPLIRASRH 60

Query: 61  VHSQVSTPGDEFGNFEESGSVNGVFSPDSYIWREWSNFLGSLDSGGYFGSPGSGNEFVAV 120
           VHSQVSTPGDEFGNFEESGSV+GVFS DSYIWREWS FLGSLDSGGYFGS  SGNEFVAV
Sbjct: 61  VHSQVSTPGDEFGNFEESGSVSGVFSQDSYIWREWSKFLGSLDSGGYFGSLDSGNEFVAV 120

Query: 121 QELPAEFVNAANACLAFSRGREHLLGLLPRRDIEVLVESVNPCLFRDGDASLRKMKLFLQ 180
           QELPAEFVNAANACLAFSRGREHLLGLLPRRDIEVLVESVNPCLFRDGDASLRKMKLFLQ
Sbjct: 121 QELPAEFVNAANACLAFSRGREHLLGLLPRRDIEVLVESVNPCLFRDGDASLRKMKLFLQ 180

Query: 181 GDETQVLDSDKARTIDLFKFILSYARNPTVSSESNLYSRDQVESSMRNLLSEICKLCFSN 240
           GDETQVLDSDKARTIDLFKFILSYARNPTVSSESNLYSRDQVESSMRNLLSEICKLCFSN
Sbjct: 181 GDETQVLDSDKARTIDLFKFILSYARNPTVSSESNLYSRDQVESSMRNLLSEICKLCFSN 240

Query: 241 PDPKLLETDNQFSDKYSQSRGPYGPKVEMKRGDWICPRCSFMNFARNVKCLECEEARPKR 300
           PDPKLLETDNQFSDKYSQSRGPYGPKVEMKRGDWICPRCSFMNFARNVKCLECEEARPKR
Sbjct: 241 PDPKLLETDNQFSDKYSQSRGPYGPKVEMKRGDWICPRCSFMNFARNVKCLECEEARPKR 300

Query: 301 QLIGGEWECPQCDFFNYGRNTVCLRCDCKRPGPPSLSNININSGLGNDNGSHTIKVDIDS 360
           QLIGGEWECPQCDFFNYGRNTVCLRCDCKRPGPPSLSNININSGLGNDNGS TIKVDIDS
Sbjct: 301 QLIGGEWECPQCDFFNYGRNTVCLRCDCKRPGPPSLSNININSGLGNDNGSRTIKVDIDS 360

Query: 361 KLAANEEKAQRWFSKISQLDSTSDSGSSITDEDFPEIMPLRKGVNRFVVSTRKTPLERRL 420
           KLAANEEKAQRWFSKISQLDSTSDSGSSITDEDFPEIMPLRKGVNRFVVSTRKTPLERRL
Sbjct: 361 KLAANEEKAQRWFSKISQLDSTSDSGSSITDEDFPEIMPLRKGVNRFVVSTRKTPLERRL 420

Query: 421 ANAQYRRNLGNDGVPENNSSELSASNNSLDKTTSHDDILGRLSTNSQSTNFGNEQGIRTN 480
           ANAQYRRNLGNDGVPENN SELSAS NSLDKTTSHDDILGRLS+NSQSTNFGNEQGIRTN
Sbjct: 421 ANAQYRRNLGNDGVPENNCSELSASTNSLDKTTSHDDILGRLSSNSQSTNFGNEQGIRTN 480

Query: 481 YTLSSTSGSSQYESPKGGNSSYVPFVPLPPDMFAKKPKNSSMESEVVGTDNNKSLPSSSN 540
           YTLSS+SGSSQYESPKGG+SSYVPFVPL PDMFAKKPKNSSME+EVVGTDNNKSLPS SN
Sbjct: 481 YTLSSSSGSSQYESPKGGHSSYVPFVPLSPDMFAKKPKNSSMETEVVGTDNNKSLPSGSN 540

Query: 541 EWTGSTSQSNGLNEVGDIPSPPQNPTQKINEGKEETEKSERWFKRVAELHNVTDLPSAIS 600
           EWTGSTSQSNGLNEVGDIPSPPQNP QKINEGKEETEKSERWFKRVAELHNVTDL SAIS
Sbjct: 541 EWTGSTSQSNGLNEVGDIPSPPQNPIQKINEGKEETEKSERWFKRVAELHNVTDLTSAIS 600

Query: 601 DEDFPEIMPMRKGENRFVVSKKKDRSLTSPAYKRRAAMEQAGSSNFVPFVPFPPDYFAKK 660
           DEDFPEIMPMRKGENRFVVSKKKDRSLTSPAYKRRAAMEQAGSSNFVPFVPFPPDYFAKK
Sbjct: 601 DEDFPEIMPMRKGENRFVVSKKKDRSLTSPAYKRRAAMEQAGSSNFVPFVPFPPDYFAKK 660

Query: 661 DKALSDDSNSQVTETFSDDSNGQVTEAQSYDTSIGIDDRSNSQQSDNLETQAGRFNSELH 720
           DKALSDDSNSQVTE FSDDSNGQVTEAQSYDTSIGIDDRSNSQQSDNLETQAGR +SELH
Sbjct: 661 DKALSDDSNSQVTENFSDDSNGQVTEAQSYDTSIGIDDRSNSQQSDNLETQAGRLDSELH 720

Query: 721 TRNSSRSDEATAYGVPNIQSLDTNLVSSQPGHKNVANNNTSVAGNPSPASEMPNVREKWS 780
           TRNSSRSDEATAYGVPNIQSLDTNLVSSQPGHKNVANNNT+VAGN SPASEMPNVREKWS
Sbjct: 721 TRNSSRSDEATAYGVPNIQSLDTNLVSSQPGHKNVANNNTNVAGNQSPASEMPNVREKWS 780

Query: 781 GKSLEGSAVTEPDPLDMSEEAKVQRWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRF 840
           GKSLEGSAVTEPDPLDMSEEAKVQRWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRF
Sbjct: 781 GKSLEGSAVTEPDPLDMSEEAKVQRWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRF 840

Query: 841 VVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDGS 878
           VVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDG+
Sbjct: 841 VVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDGN 877

[Close]

BLAST of CmoCh06G000600 vs. ExPASy TrEMBL
Match: A0A6J1DJ45 (zinc finger protein VAR3, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021553 PE=4 SV=1)

HSP 1 Score: 1334.7 bits (3453), Expect = 0.0e+00
Identity = 714/900 (79.33%), Postives = 757/900 (84.11%), Query Frame = 0


Query: 1   MGGATRFFVLLSTPLPLIHHHRRPSFLRLASHYHNFFR-----SSLKPRN----RFLSPS 60
           MGGATRFFVLLS PLPLI HHRRPS LRLASHYHNFFR     SSL   N      LSPS
Sbjct: 1   MGGATRFFVLLSGPLPLI-HHRRPSILRLASHYHNFFRSSFSFSSLHTTNVCIPPILSPS 60

Query: 61  FPLIRASRHVHSQVSTPGDEFGNFEESG-SVNGVFSPDSYIWREWSNFLGSLDSGGYFGS 120
           FP I ASR +HSQVST GD+ G+ E SG S  G FSP+S+  REWS FL SLD+GGYFG 
Sbjct: 61  FPPITASRRLHSQVSTVGDDSGSLEGSGWSGYGAFSPNSHNSREWSKFLQSLDAGGYFGR 120

Query: 121 PGSGNEFVAVQELPAEFVNAANACLAFSRGREHLLGLLPRRDIEVLVESVNPCLFRDGDA 180
            GS +E +AV+ELPAEFV+AA ACLAFSR RE LLGLLP RDIEVLVESV PCLFRDGDA
Sbjct: 121 QGSASELLAVEELPAEFVSAAIACLAFSREREQLLGLLPMRDIEVLVESVIPCLFRDGDA 180

Query: 181 SLRKMKLFLQGDETQVLDSDKARTIDLFKFILSYARNPTVSSESNLYSRDQVESSMRNLL 240
           S RKM+LFL+G ETQVLDSDKARTIDLFKFILSYARNPTVSSESNLYSRD VESS+RNLL
Sbjct: 181 STRKMELFLRGSETQVLDSDKARTIDLFKFILSYARNPTVSSESNLYSRDLVESSVRNLL 240

Query: 241 SEICKLCFSNPDPKLLETDNQFSDKYSQSRGPYGPKVEMKRGDWICPRCSFMNFARNVKC 300
            EICKLCFSNPDPKL+ET NQFSDKY QSRGPYGPK+EMKRGDWICPRCSFMNFARNVKC
Sbjct: 241 GEICKLCFSNPDPKLMETVNQFSDKYGQSRGPYGPKIEMKRGDWICPRCSFMNFARNVKC 300

Query: 301 LECEEARPKRQLIGGEWECPQCDFFNYGRNTVCLRCDCKRPGPPSLSNININSGLGNDNG 360
           LECEEARPKRQL G EWECPQCDFFNYGRNTVCLRCDCKRPG PSLSNININSGLGNDNG
Sbjct: 301 LECEEARPKRQLTGAEWECPQCDFFNYGRNTVCLRCDCKRPGAPSLSNININSGLGNDNG 360

Query: 361 SHTIKVDIDSKLAANEEKAQRWFSKISQLDSTSDSGSSITDEDFPEIMPLRKGVNRFVVS 420
           S   KVDIDSKLAANEEKAQRWFSKISQ DSTSDSGSSI DEDFPEIMPLRKGVNRFVVS
Sbjct: 361 SQATKVDIDSKLAANEEKAQRWFSKISQQDSTSDSGSSIADEDFPEIMPLRKGVNRFVVS 420

Query: 421 TRKTPLERRLANAQYRRNLGNDGVPENNSSELSASNNSLDKTTSH--DDILGRLSTNSQS 480
           TRKTPLERRLANAQYRRNLGNDGVPENNSS++ A+N SLDKT S   DDILGR STN Q+
Sbjct: 421 TRKTPLERRLANAQYRRNLGNDGVPENNSSKVDAANRSLDKTISQNLDDILGRTSTNYQA 480

Query: 481 TNFGNEQGIRTNYTLSSTSGSSQYESPKGGNSSYVPFVPLPPDMFAKKPKNSSMESEVVG 540
           +N GNEQG     T SS SGSSQYES K  NSSYVPFVPLPPDMFAKKP           
Sbjct: 481 SNVGNEQG-----TTSSVSGSSQYESLKVRNSSYVPFVPLPPDMFAKKP----------- 540

Query: 541 TDNNKSLPSSSNEWTGSTSQSNGLNEVGDIPS---PPQNPTQKINEGKEETEKSERWFKR 600
            DNNKS+ S +NEWTGS S+SN LN+VG IP+    P N T+K+NEG+EETEKSERWFKR
Sbjct: 541 -DNNKSVLSDANEWTGSASKSNELNDVGVIPNTVEKPMNQTEKLNEGEEETEKSERWFKR 600

Query: 601 VAELHNVTDLPSAISDEDFPEIMPMRKGENRFVVSKKKDRSLTSPAYKRRAAMEQAGSSN 660
           VAELHNV+DL SAISDEDFPEIMPMRKG+NRFVVSKKKDRSLTSPAYKRRA+MEQAGSSN
Sbjct: 601 VAELHNVSDLTSAISDEDFPEIMPMRKGDNRFVVSKKKDRSLTSPAYKRRASMEQAGSSN 660

Query: 661 FVPFVPFPPDYFAKKDKALSDDSNSQVTETFSDDSNGQVTEAQSYDTSIGIDDRSNSQQS 720
           FVPFVPFPPDYFAKKDK  SD S S VT            EAQS DT I  DDR N++QS
Sbjct: 661 FVPFVPFPPDYFAKKDKPSSDGSTSNVT-----------GEAQSSDTRIEFDDRDNAEQS 720

Query: 721 DNLETQAGRFNSELHTRNSSRSDEATAYGVPNIQSLDTNLVSSQPGHKNV--------AN 780
           DNL+TQ G+ NSEL + NSS+++EA  Y VPNIQS  TN VSSQ   +NV        AN
Sbjct: 721 DNLQTQTGKLNSELLSGNSSQNNEAAEYRVPNIQSSGTNFVSSQSARENVSSSDHVEEAN 780

Query: 781 NNTSVAGNPSPASEMPNVREKWSGKSLEGSAVTEPDPLDMSEEAKVQRWFRRVAQIKDIS 840
           NNT+VAGNPSPASE+ N+REKWSGKSLEGSAVTEPDPLDMSEEAK QRWFRRVAQIKDIS
Sbjct: 781 NNTNVAGNPSPASEIQNIREKWSGKSLEGSAVTEPDPLDMSEEAKAQRWFRRVAQIKDIS 840

Query: 841 ELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDGS 878
           ELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDGS
Sbjct: 841 ELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDGS 871

[Close]

BLAST of CmoCh06G000600 vs. ExPASy TrEMBL
Match: A0A5D3DPI0 (Zinc finger protein VAR3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005940 PE=4 SV=1)

HSP 1 Score: 1311.2 bits (3392), Expect = 0.0e+00
Identity = 690/879 (78.50%), Postives = 733/879 (83.39%), Query Frame = 0


Query: 1   MGGATRFFVLLSTPLPLIHHHRRPSFLRLASHYHNFFRSSLKPRNRFLSPSFPLIRASRH 60
           MGGATRFFVLLS PLPL+ H+RR SFLRLASHYH FFRSSL P  R LS SF  IRASRH
Sbjct: 1   MGGATRFFVLLSGPLPLV-HYRRSSFLRLASHYHKFFRSSLHPSARILSSSFHPIRASRH 60

Query: 61  VHSQVSTPGDEFGNFEESGSVNGVFSPDSYIWREWSNFLGSLDSGGYFGSPGSGNEFVAV 120
           VHSQVST GD+FG+FE+ GS N +FSPDSY WREWS FLG L SGGYFG   SG E VA 
Sbjct: 61  VHSQVSTIGDDFGSFEDPGSANSMFSPDSYTWREWSQFLGGLISGGYFGRRVSGIELVAD 120

Query: 121 QELPAEFVNAANACLAFSRGREHLLGLLPRRDIEVLVESVNPCLFRDGDASLRKMKLFLQ 180
            ELPAEF+N ANACLAFS  REHLLGLLPR+DIEVLVESVNPC FRDGD S RKMKLFL+
Sbjct: 121 LELPAEFLNTANACLAFSLEREHLLGLLPRKDIEVLVESVNPCFFRDGDDSSRKMKLFLR 180

Query: 181 GDETQVLDSDKARTIDLFKFILSYARNPTVSSESNLYSRDQVESSMRNLLSEICKLCFSN 240
           GDETQV D DKA  IDLFKFILSYARNP VSSESNLY RD VE S+RNLL EICKL FSN
Sbjct: 181 GDETQVSDHDKAHIIDLFKFILSYARNPVVSSESNLYGRDLVELSVRNLLREICKLGFSN 240

Query: 241 PDPKLLETDNQFSDKYSQSRGPYGPKVEMKRGDWICPRCSFMNFARNVKCLECEEARPKR 300
           PDP L ET NQ  DKY+Q RGPYGPK+EMKRGDWICPRCSFMNFARNVKCLEC+EARPKR
Sbjct: 241 PDPNLPETANQIPDKYAQPRGPYGPKIEMKRGDWICPRCSFMNFARNVKCLECDEARPKR 300

Query: 301 QLIGGEWECPQCDFFNYGRNTVCLRCDCKRPGPPSLSNININSGLGNDNGSHTIKVDIDS 360
           QL GGEWECPQCDFFNYGRNT+CLRCDCKRPG PS+SNIN N   GNDNGS   KVDIDS
Sbjct: 301 QLNGGEWECPQCDFFNYGRNTLCLRCDCKRPGAPSVSNINENFASGNDNGSRATKVDIDS 360

Query: 361 KLAANEEKAQRWFSKISQLDSTSDSGSSITDEDFPEIMPLRKGVNRFVVSTRKTPLERRL 420
           KLA NEEKAQRWFSKISQLDS SDSGSSI DEDFPEIMPLRKGVNRFVVSTRKTPLERRL
Sbjct: 361 KLADNEEKAQRWFSKISQLDSMSDSGSSIADEDFPEIMPLRKGVNRFVVSTRKTPLERRL 420

Query: 421 ANAQYRRNLGNDGVPENNSSELSASNNSLDKTTSH--DDILGRLSTNSQSTNFGNEQGIR 480
           ANAQY+ NLGN GVPENNSSELSASNN LD+      DD  GR STNSQSTN G EQG  
Sbjct: 421 ANAQYKGNLGNYGVPENNSSELSASNNPLDEKIGQRLDDTFGRTSTNSQSTNLGKEQGTS 480

Query: 481 TNYTLSSTSGSSQYESPKGGNSSYVPFVPLPPDMFAKKPKNSSMESEVVGTDNNKSLPSS 540
           TNYT SS+SGS QY S KG NS+YVPFVPLPPDMFAKKP NS+MES+VVGTDNNKSL S 
Sbjct: 481 TNYTSSSSSGSLQYASLKGSNSNYVPFVPLPPDMFAKKPTNSTMESKVVGTDNNKSLSSG 540

Query: 541 SNEWTGSTSQSNGLNEVGDIPSPPQNPTQKINEGKEETEKSERWFKRVAELHNVTDLPSA 600
           SNEWTG+ SQSN + EVGD  +PP+N T+KINEGKE+ EKSERWFKRVAELHNVTDLPSA
Sbjct: 541 SNEWTGNASQSNEMKEVGD--TPPRNETEKINEGKEDAEKSERWFKRVAELHNVTDLPSA 600

Query: 601 ISDEDFPEIMPMRKGENRFVVSKKKDRSLTSPAYKRRAAMEQAGSSNFVPFVPFPPDYFA 660
           ISDEDFPEIMP+RKGENRFVVSKKKDRSLTSPAYKR AAMEQ+GSSNFVPFVPFPPDYFA
Sbjct: 601 ISDEDFPEIMPIRKGENRFVVSKKKDRSLTSPAYKRHAAMEQSGSSNFVPFVPFPPDYFA 660

Query: 661 KKDKALSDDSNSQVTETFSDDSNGQVTEAQSYDTSIGIDDRSNSQQSDNLETQAGRFNSE 720
           KKDK  SD SNS            + TEAQS +T IG+DD +N+QQSDN ETQ  RFNSE
Sbjct: 661 KKDKHSSDYSNS------------KATEAQSNNTRIGVDDGNNAQQSDNKETQTSRFNSE 720

Query: 721 LHTRNSSRSDEATAYGVPNIQSLDTNLVSSQPGHKNVANNNTSVAGNPSPASEMPNVREK 780
           L T +SS + EA                SS    K  +N+NT+ AGNPS  +E+ N+REK
Sbjct: 721 LRTGSSSWNSEA----------------SSSDYVKKESNHNTNAAGNPS--AEVQNIREK 780

Query: 781 WSGKSLEGSAVTEPDPLDMSEEAKVQRWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVN 840
           WSGKSLEGSAVTEPDPLDMSEEAK QRWFRRVAQIKDISELSQIPDEDFPSIMPMR+GVN
Sbjct: 781 WSGKSLEGSAVTEPDPLDMSEEAKAQRWFRRVAQIKDISELSQIPDEDFPSIMPMRQGVN 840

Query: 841 RFVVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDGS 878
           RFVVSKRKTPLERRLTSPQYRRNLPIVSSDPPKREND S
Sbjct: 841 RFVVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDDS 846

[Close]

BLAST of CmoCh06G000600 vs. ExPASy TrEMBL
Match: A0A1S3B849 (zinc finger protein VAR3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486824 PE=4 SV=1)

HSP 1 Score: 1311.2 bits (3392), Expect = 0.0e+00
Identity = 690/879 (78.50%), Postives = 733/879 (83.39%), Query Frame = 0


Query: 1   MGGATRFFVLLSTPLPLIHHHRRPSFLRLASHYHNFFRSSLKPRNRFLSPSFPLIRASRH 60
           MGGATRFFVLLS PLPL+ H+RR SFLRLASHYH FFRSSL P  R LS SF  IRASRH
Sbjct: 1   MGGATRFFVLLSGPLPLV-HYRRSSFLRLASHYHKFFRSSLHPSARILSSSFHPIRASRH 60

Query: 61  VHSQVSTPGDEFGNFEESGSVNGVFSPDSYIWREWSNFLGSLDSGGYFGSPGSGNEFVAV 120
           VHSQVST GD+FG+FE+ GS N +FSPDSY WREWS FLG L SGGYFG   SG E VA 
Sbjct: 61  VHSQVSTIGDDFGSFEDPGSANSMFSPDSYTWREWSQFLGGLISGGYFGRRVSGIELVAD 120

Query: 121 QELPAEFVNAANACLAFSRGREHLLGLLPRRDIEVLVESVNPCLFRDGDASLRKMKLFLQ 180
            ELPAEF+N ANACLAFS  REHLLGLLPR+DIEVLVESVNPC FRDGD S RKMKLFL+
Sbjct: 121 LELPAEFLNTANACLAFSLEREHLLGLLPRKDIEVLVESVNPCFFRDGDDSSRKMKLFLR 180

Query: 181 GDETQVLDSDKARTIDLFKFILSYARNPTVSSESNLYSRDQVESSMRNLLSEICKLCFSN 240
           GDETQV D DKA  IDLFKFILSYARNP VSSESNLY RD VE S+RNLL EICKL FSN
Sbjct: 181 GDETQVSDHDKAHIIDLFKFILSYARNPVVSSESNLYGRDLVELSVRNLLREICKLGFSN 240

Query: 241 PDPKLLETDNQFSDKYSQSRGPYGPKVEMKRGDWICPRCSFMNFARNVKCLECEEARPKR 300
           PDP L ET NQ  DKY+Q RGPYGPK+EMKRGDWICPRCSFMNFARNVKCLEC+EARPKR
Sbjct: 241 PDPNLPETANQIPDKYAQPRGPYGPKIEMKRGDWICPRCSFMNFARNVKCLECDEARPKR 300

Query: 301 QLIGGEWECPQCDFFNYGRNTVCLRCDCKRPGPPSLSNININSGLGNDNGSHTIKVDIDS 360
           QL GGEWECPQCDFFNYGRNT+CLRCDCKRPG PS+SNIN N   GNDNGS   KVDIDS
Sbjct: 301 QLNGGEWECPQCDFFNYGRNTLCLRCDCKRPGAPSVSNINENFASGNDNGSRATKVDIDS 360

Query: 361 KLAANEEKAQRWFSKISQLDSTSDSGSSITDEDFPEIMPLRKGVNRFVVSTRKTPLERRL 420
           KLA NEEKAQRWFSKISQLDS SDSGSSI DEDFPEIMPLRKGVNRFVVSTRKTPLERRL
Sbjct: 361 KLADNEEKAQRWFSKISQLDSMSDSGSSIADEDFPEIMPLRKGVNRFVVSTRKTPLERRL 420

Query: 421 ANAQYRRNLGNDGVPENNSSELSASNNSLDKTTSH--DDILGRLSTNSQSTNFGNEQGIR 480
           ANAQY+ NLGN GVPENNSSELSASNN LD+      DD  GR STNSQSTN G EQG  
Sbjct: 421 ANAQYKGNLGNYGVPENNSSELSASNNPLDEKIGQRLDDTFGRTSTNSQSTNLGKEQGTS 480

Query: 481 TNYTLSSTSGSSQYESPKGGNSSYVPFVPLPPDMFAKKPKNSSMESEVVGTDNNKSLPSS 540
           TNYT SS+SGS QY S KG NS+YVPFVPLPPDMFAKKP NS+MES+VVGTDNNKSL S 
Sbjct: 481 TNYTSSSSSGSLQYASLKGSNSNYVPFVPLPPDMFAKKPTNSTMESKVVGTDNNKSLSSG 540

Query: 541 SNEWTGSTSQSNGLNEVGDIPSPPQNPTQKINEGKEETEKSERWFKRVAELHNVTDLPSA 600
           SNEWTG+ SQSN + EVGD  +PP+N T+KINEGKE+ EKSERWFKRVAELHNVTDLPSA
Sbjct: 541 SNEWTGNASQSNEMKEVGD--TPPRNETEKINEGKEDAEKSERWFKRVAELHNVTDLPSA 600

Query: 601 ISDEDFPEIMPMRKGENRFVVSKKKDRSLTSPAYKRRAAMEQAGSSNFVPFVPFPPDYFA 660
           ISDEDFPEIMP+RKGENRFVVSKKKDRSLTSPAYKR AAMEQ+GSSNFVPFVPFPPDYFA
Sbjct: 601 ISDEDFPEIMPIRKGENRFVVSKKKDRSLTSPAYKRHAAMEQSGSSNFVPFVPFPPDYFA 660

Query: 661 KKDKALSDDSNSQVTETFSDDSNGQVTEAQSYDTSIGIDDRSNSQQSDNLETQAGRFNSE 720
           KKDK  SD SNS            + TEAQS +T IG+DD +N+QQSDN ETQ  RFNSE
Sbjct: 661 KKDKHSSDYSNS------------KATEAQSNNTRIGVDDGNNAQQSDNKETQTSRFNSE 720

Query: 721 LHTRNSSRSDEATAYGVPNIQSLDTNLVSSQPGHKNVANNNTSVAGNPSPASEMPNVREK 780
           L T +SS + EA                SS    K  +N+NT+ AGNPS  +E+ N+REK
Sbjct: 721 LRTGSSSWNSEA----------------SSSDYVKKESNHNTNAAGNPS--AEVQNIREK 780

Query: 781 WSGKSLEGSAVTEPDPLDMSEEAKVQRWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVN 840
           WSGKSLEGSAVTEPDPLDMSEEAK QRWFRRVAQIKDISELSQIPDEDFPSIMPMR+GVN
Sbjct: 781 WSGKSLEGSAVTEPDPLDMSEEAKAQRWFRRVAQIKDISELSQIPDEDFPSIMPMRQGVN 840

Query: 841 RFVVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDGS 878
           RFVVSKRKTPLERRLTSPQYRRNLPIVSSDPPKREND S
Sbjct: 841 RFVVSKRKTPLERRLTSPQYRRNLPIVSSDPPKRENDDS 846

[Close]

BLAST of CmoCh06G000600 vs. TAIR 10
Match: AT5G17790.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 566.2 bits (1458), Expect = 4.5e-161
Identity = 353/782 (45.14%), Postives = 452/782 (57.80%), Query Frame = 0


Query: 94  EWSNFLGSLDSGGYFGSPG--SGNEFVAVQELPAEFVNAANACLAFSRGREHLLGLLPRR 153
           EW+  L SL   GYF   G  SG E       P E +  A ACLA +R R  LL +L RR
Sbjct: 94  EWTELLQSLSKAGYFSDSGSISGLESEFFPGFPDELLRPALACLALARERPELLEMLSRR 153

Query: 154 DIEVLVESVNPCLFRDGDASLRKMKLFLQGDET---QVLDSDKARTIDLFKFILSYARNP 213
           D+EVLVE+  P LF+ G  SL++M L+L+       +++D +KA T+DL + ILSY  + 
Sbjct: 154 DVEVLVENGKPFLFKTGPDSLKRMSLYLRSGLQGIGKLMDMEKASTVDLMRLILSYVVDV 213

Query: 214 TVSSESNLYSRDQVESSMRNLLSEICKLCFSNPDPKLLET-DNQFSDKYSQSRGPYGPKV 273
             S ES  ++++ +ESS+R+LLS+I K+    P+  + +T  NQ+SD+  Q    +   V
Sbjct: 214 ASSEESKQHNKEIMESSVRSLLSQIAKMSLRPPESNVHDTMQNQYSDRDGQGVRSFQNNV 273

Query: 274 EMKRGDWICPRCSFMNFARNVKCLECEEARPKRQLIGGEWECPQCDFFNYGRNTVCLRCD 333
           EMKRGDWIC RCS MNFARNVKC +C+EARPKRQL G EWECPQCDF+NYGRN  CLRCD
Sbjct: 274 EMKRGDWICSRCSGMNFARNVKCFQCDEARPKRQLTGSEWECPQCDFYNYGRNVACLRCD 333

Query: 334 CKRPGPPSLSNININSGLGNDNGSHTIKVDIDSKLAANEEKAQRWFSKISQLDSTSDSGS 393
           CKRP          +S L + N  ++   +++ +L  NE+KAQRW SK++Q    SD+ S
Sbjct: 334 CKRPR---------DSSLNSANSDYSSDPELERRLVENEKKAQRWLSKVAQ--GGSDANS 393

Query: 394 SITDEDFPEIMPLRKGVNRFVVSTRKTPLERRLANAQYRRNLGNDGVPENNSSELSASNN 453
             TDEDFPEIMPLRKGVNR+VVSTRK PLERRLAN + R  +  DG              
Sbjct: 394 VDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANTENR--VATDG-------------- 453

Query: 454 SLDKTTSHDDILGRLSTNSQSTNFGNEQGIRTNYTLSSTSGSSQYESPKGGNSSYVPFVP 513
             +   S D+ LG  +T S +   G+   + T+ +      S ++ES +G N+ +VPFVP
Sbjct: 454 --NSKRSDDNALGSKTTRSLNEILGSSSSL-TSRSDDKNVSSRRFESSQGINTDFVPFVP 513

Query: 514 LPPDMFAKKPKNSSMESEVVGTDNNKSLPSSSNEWTGSTSQSNGLNEVGDIPSPPQNPTQ 573
           LP DMFAKKPK    E+++   DN +    S           +  N  G         T 
Sbjct: 514 LPSDMFAKKPKE---ETQIGLIDNIQVDGFSGGNQNVYQEDKSDANHSG-------KETD 573

Query: 574 KINEGKEETEKSERWFKRVAELHNVTDLPSAISDEDFPEIMPMRKGENRFVVSKKKDRSL 633
           ++ +   ++E+  RWFKRV ELHNV+DL SAI  E  PE MPMRKGENRFVVS+KKDRSL
Sbjct: 574 RLEKEDHKSEEPARWFKRVTELHNVSDLESAIPQEISPEKMPMRKGENRFVVSRKKDRSL 633

Query: 634 TSPAYKRRAAMEQAGSSNFVPFVPFPPDYFAKKDKALSDDSNSQVTETFSDDSNGQVTEA 693
           TSPAYKR         S+FVPFVPFPPDYFAK                            
Sbjct: 634 TSPAYKR------PEDSDFVPFVPFPPDYFAK---------------------------- 693

Query: 694 QSYDTSIGIDDRSNSQQSDNLETQAGRFNSELHTRNSSRSDEATAYGVPNIQSLDTNLVS 753
                     ++   +  D L   A        T N S+                  +V 
Sbjct: 694 ----------EKQPKESIDTLPAPA--------TENVSQ------------------VVQ 752

Query: 754 SQPGHKNVANNNTSVAGNPSPASEMPNVREKWSGKSLEGSAVTEPDPLDMSEEAKVQRWF 813
            +P   ++  ++T              +R   +GKSLEGS V E D LDMSEEAK +RWF
Sbjct: 754 QEPREPSINKSDTVAV----------KIR---NGKSLEGSLVKESDLLDMSEEAKAERWF 752

Query: 814 RRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSPQYRRNLPIVSS 870
           +RVA+IK+ISELS+IPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTS +++RN  I +S
Sbjct: 814 KRVAEIKNISELSEIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQRHQRNPHITNS 752

[Close]

BLAST of CmoCh06G000600 vs. TAIR 10
Match: AT1G55040.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-39
Identity = 106/294 (36.05%), Postives = 138/294 (46.94%), Query Frame = 0


Query: 92  WREWSNFLGSLDSGGYF-------------------GSPGSGNEFVAVQELPAEFVNAAN 151
           W EW   +  L    YF                    S G G +      L  +F    N
Sbjct: 149 WPEWMELMERLVKQNYFDHRRERDDDDMVNSLGIDVSSVGLGEDENVGVALFQDFRAVQN 208

Query: 152 ACLAFSRGREHLLGLLPRRDIEVLVESVNPCLFRDGDASLRKMKLFLQGDETQVLDS--- 211
           AC  F + R  +L  L R DI++LV    P   R    S + ++  +  DE  V  S   
Sbjct: 209 ACSNFGKDRFDILRSLSRNDIQILVGHGCPATDRKVVFSGKLLRKRVHLDEGDVCSSCSL 268

Query: 212 --------------DKARTIDLFKFILSYARNP---TVSSESNLYSRDQVESSMRNLLSE 271
                         D+ARTIDL + + +Y  +P   TV+++S L  +  V+S +R LL E
Sbjct: 269 RNSCEKAFLLTNKEDEARTIDLMRILFTYGFDPLNGTVANKS-LLKKKSVKSVVRKLLHE 328

Query: 272 ICKLCFSNPDPKLL-ETDNQFSDKYSQSRGPYGPK-------VEMKRGDWICPRCSFMNF 331
           I KL     DP L      +   K  Q   P  PK       VEMK+GDW+CP+C FMNF
Sbjct: 329 IVKLSAVPIDPNLTPPVIKRAPPKVKQP--PPTPKRRVGRDDVEMKKGDWLCPKCDFMNF 388

Query: 332 ARNVKCLECEEARPKRQLIGGEWECPQCDFFNYGRNTVCLRCDCKRPGPPSLSN 339
           A+N  CL+C+  RPKRQL+ GEWECP+C+F NY RN  C  CDCKRP    L N
Sbjct: 389 AKNTICLQCDAKRPKRQLLPGEWECPECNFLNYRRNMACFHCDCKRPADAILEN 439

[Close]

BLAST of CmoCh06G000600 vs. TAIR 10
Match: AT1G70650.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 127.1 bits (318), Expect = 7.0e-29
Identity = 85/311 (27.33%), Postives = 134/311 (43.09%), Query Frame = 0


Query: 83  GVFSPDSYIWREWSNFLGSLDSGGYFGSPGSGNEFVAVQELPAEFVNAANACLAFSRGRE 142
           G+  P S+ W EW + +G L   GYF       E +       E  +   ACL F+R R 
Sbjct: 37  GLVDPSSHPWPEWLDLMGMLAKKGYF------EESLIPLMSSKESNHIRTACLNFARHRF 96

Query: 143 HLLGLLPRRDIEVLVESVNPCLFRDGDASLRKMKLFLQGDE-----------------TQ 202
            L+  L ++DI+V+     P   R    S ++++ ++  DE                  Q
Sbjct: 97  TLVRNLSKKDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVCGSCNLRGKCERAYAQ 156

Query: 203 VLDSDKARTIDLFKFILSY---ARNPTVSSESNLYSRDQVESSMRNLLSEI--------- 262
             D + ARTID+ + +L+Y   + +PTV  E+       VE S+R LL E          
Sbjct: 157 ARDDEGARTIDVMRLLLTYGLDSISPTV--ENRACQTKLVEDSVRKLLRESVAYSLTDFE 216

Query: 263 ----------------------------------CKLCFSNPDPKLLETDNQFSDKYSQS 322
                                             CK      + + L  D    ++  Q 
Sbjct: 217 SAETETAGDELQPNSQDIDERDPRKRPGDWYCTECKFLNFAKNIRCLRCDVFSEERLKQL 276

Query: 323 RGPYGPKVEMKRGDWICPRCSFMNFARNVKCLECEEARPKRQLIGGEWECPQCDFFNYGR 331
           +      + +K+GDWIC  C+F+NF++N +CL C++    RQ+  GEWEC  C++ N+ R
Sbjct: 277 KEEQKDHLPLKKGDWICQTCNFLNFSKNTRCLRCKDKPTLRQINPGEWECESCNYINFRR 336

[Close]

BLAST of CmoCh06G000600 vs. TAIR 10
Match: AT1G70650.2 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 127.1 bits (318), Expect = 7.0e-29
Identity = 85/311 (27.33%), Postives = 134/311 (43.09%), Query Frame = 0


Query: 83  GVFSPDSYIWREWSNFLGSLDSGGYFGSPGSGNEFVAVQELPAEFVNAANACLAFSRGRE 142
           G+  P S+ W EW + +G L   GYF       E +       E  +   ACL F+R R 
Sbjct: 37  GLVDPSSHPWPEWLDLMGMLAKKGYF------EESLIPLMSSKESNHIRTACLNFARHRF 96

Query: 143 HLLGLLPRRDIEVLVESVNPCLFRDGDASLRKMKLFLQGDE-----------------TQ 202
            L+  L ++DI+V+     P   R    S ++++ ++  DE                  Q
Sbjct: 97  TLVRNLSKKDIKVIAGCGCPSTDRKVVNSGKRLRAYVGIDEGNVCGSCNLRGKCERAYAQ 156

Query: 203 VLDSDKARTIDLFKFILSY---ARNPTVSSESNLYSRDQVESSMRNLLSEI--------- 262
             D + ARTID+ + +L+Y   + +PTV  E+       VE S+R LL E          
Sbjct: 157 ARDDEGARTIDVMRLLLTYGLDSISPTV--ENRACQTKLVEDSVRKLLRESVAYSLTDFE 216

Query: 263 ----------------------------------CKLCFSNPDPKLLETDNQFSDKYSQS 322
                                             CK      + + L  D    ++  Q 
Sbjct: 217 SAETETAGDELQPNSQDIDERDPRKRPGDWYCTECKFLNFAKNIRCLRCDVFSEERLKQL 276

Query: 323 RGPYGPKVEMKRGDWICPRCSFMNFARNVKCLECEEARPKRQLIGGEWECPQCDFFNYGR 331
           +      + +K+GDWIC  C+F+NF++N +CL C++    RQ+  GEWEC  C++ N+ R
Sbjct: 277 KEEQKDHLPLKKGDWICQTCNFLNFSKNTRCLRCKDKPTLRQINPGEWECESCNYINFRR 336

[Close]

BLAST of CmoCh06G000600 vs. TAIR 10
Match: AT1G48570.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 98.2 bits (243), Expect = 3.5e-20
Identity = 43/89 (48.31%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 267 VEMKRGDWICPRCSFMNFARNVKCLECEEARPKRQLIGGEWECPQCDFFNYGRNTVCLRC 326
           VEMK+GDW C  C +MNFA N +C EC E R K     G+WECP CDF N+ RN  C +C
Sbjct: 373 VEMKKGDWNCTGCGYMNFASNKQCRECREQRHKTLAEPGDWECPSCDFVNFRRNDACKKC 432

Query: 327 DCKRPGPPSLSNININSGLGNDNGSHTIK 356
           +CKRP           S   ND   HT K
Sbjct: 433 ECKRP-----------SQANNDQEDHTWK 450

The following BLAST results are available for this feature:

BLAST of CmoCh06G000600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S9K3	6.3e-160	45.14	Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 ...	[more]
Q9JLG8	9.9e-04	33.75	Calpain-15 OS=Mus musculus OX=10090 GN=Capn15 PE=1 SV=1	[more]

BLAST of CmoCh06G000600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FU33	0.0e+00	100.00	zinc finger protein VAR3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1I6Q5	0.0e+00	97.38	zinc finger protein VAR3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470...	[more]
A0A6J1DJ45	0.0e+00	79.33	zinc finger protein VAR3, chloroplastic isoform X1 OS=Momordica charantia OX=367...	[more]
A0A5D3DPI0	0.0e+00	78.50	Zinc finger protein VAR3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3B849	0.0e+00	78.50	zinc finger protein VAR3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486824 ...	[more]

BLAST of CmoCh06G000600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17790.1	4.5e-161	45.14	zinc finger (Ran-binding) family protein	[more]
AT1G55040.1	1.1e-39	36.05	zinc finger (Ran-binding) family protein	[more]
AT1G70650.1	7.0e-29	27.33	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT1G70650.2	7.0e-29	27.33	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT1G48570.1	3.5e-20	48.31	zinc finger (Ran-binding) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 305..329 e-value: 0.074 score: 20.8 coord: 272..296 e-value: 7.6E-6 score: 35.4
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 305..331 e-value: 2.0E-5 score: 23.8 coord: 271..298 e-value: 2.3E-7 score: 30.0
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 307..326
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 274..293
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 303..332 score: 9.156486
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 270..299 score: 10.387335
None	No IPR available	GENE3D	4.10.1060.10		coord: 264..300 e-value: 1.5E-14 score: 55.0 coord: 301..334 e-value: 8.5E-8 score: 33.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 431..498
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 424..580
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 845..877
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 668..768
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 661..796
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 522..569
None	No IPR available	PANTHER	PTHR23111:SF30	ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC	coord: 2..877
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 2..877
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 265..299

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000600.1	CmoCh06G000600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding