CmoCh06G000590 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	FSH1 domain-containing protein
Location	Cmo_Chr06: 367163 .. 367688 (+)
RNA-Seq Expression	CmoCh06G000590
Synteny	CmoCh06G000590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCTAACTACTGTAATTGATACCCATAATGAACCTAACTCAATATATCAAATTCAGTCAAAATCAATAAACAACACTAAATTTACGATCATTTTTTACCCATATCGTAACATCGTAAGTAGTTCAAAAATAACGAAACAGGGGAAGGTGTTGAAGGAGCATCCAACAATGAAAATGTTTGTGTCAATACCAGGAACAAAGTTCAAAGATGAAAGCATCTGTGAGGTTGCCTACAAGCACAAAATAAAGGTCAAATTTGTCCACCTGATAGGGGAAAAGGATTGGTTGAAGCTTCCTTCTAAAGAACTTGCTTCTACCTTTCATGAGCCTCTCATCATAAAGGCATCCTCAAGGTCATACTGTCCCTAGGTTAGACGAAGTAGCCACTAAGAAGCTCCGCTGCTGGGTCGATGCGATAGTTTCGAGTCATGATCATGTTGGAGATGGAGAAGCAAAGGAGAATATCACTCAGAAAGTGGCTGAGAACATTGAGAATGAGCTCGAGAATAGTAATATAACTTAA

mRNA sequence

ATGAACCTAACTACTGTAATTGATACCCATAATGAACCTAACTCAATATATCAAATTCAGTCAAAATCAATAAACAACACTAAATTTACGATCATTTTTTACCCATATCGTAACATCGTAAGTAGTTCAAAAATAACGAAACAGGGGAAGGTGTTGAAGGAGCATCCAACAATGAAAATGTTTGTGTCAATACCAGGAACAAAGTTCAAAGATGAAAGCATCTGTGAGGTTGCCTACAAGCACAAAATAAAGGTCAAATTTGTCCACCTGATAGGGGAAAAGGATTGGTTGAAGCTTCCTTCTAAAGAACTTGCTTCTACCTTTCATGAGCCTCTCATCATAAAGGCATCCTCAAGGTTAGACGAAGTAGCCACTAAGAAGCTCCGCTGCTGGGTCGATGCGATAGTTTCGAGTCATGATCATGTTGGAGATGGAGAAGCAAAGGAGAATATCACTCAGAAAGTGGCTGAGAACATTGAGAATGAGCTCGAGAATAGTAATATAACTTAA

Coding sequence (CDS)

ATGAACCTAACTACTGTAATTGATACCCATAATGAACCTAACTCAATATATCAAATTCAGTCAAAATCAATAAACAACACTAAATTTACGATCATTTTTTACCCATATCGTAACATCGTAAGTAGTTCAAAAATAACGAAACAGGGGAAGGTGTTGAAGGAGCATCCAACAATGAAAATGTTTGTGTCAATACCAGGAACAAAGTTCAAAGATGAAAGCATCTGTGAGGTTGCCTACAAGCACAAAATAAAGGTCAAATTTGTCCACCTGATAGGGGAAAAGGATTGGTTGAAGCTTCCTTCTAAAGAACTTGCTTCTACCTTTCATGAGCCTCTCATCATAAAGGCATCCTCAAGGTTAGACGAAGTAGCCACTAAGAAGCTCCGCTGCTGGGTCGATGCGATAGTTTCGAGTCATGATCATGTTGGAGATGGAGAAGCAAAGGAGAATATCACTCAGAAAGTGGCTGAGAACATTGAGAATGAGCTCGAGAATAGTAATATAACTTAA

Protein sequence

MNLTTVIDTHNEPNSIYQIQSKSINNTKFTIIFYPYRNIVSSSKITKQGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELASTFHEPLIIKASSRLDEVATKKLRCWVDAIVSSHDHVGDGEAKENITQKVAENIENELENSNIT

Homology

[Close]

BLAST of CmoCh06G000590 vs. ExPASy TrEMBL
Match: A0A6J1I8F2 (uncharacterized protein LOC111470131 OS=Cucurbita maxima OX=3661 GN=LOC111470131 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.5e-60
Identity = 124/151 (82.12%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 24  INNTKFTIIFYPYRNIVSSSKITKQGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKI 83
           + NT FTIIFYP RNIVSSSKITK GKVLKEHP MKMF+SI GT FKDESICEVAYKHKI
Sbjct: 1   MKNTNFTIIFYPSRNIVSSSKITKLGKVLKEHPAMKMFLSISGTNFKDESICEVAYKHKI 60

Query: 84  KVKFVHLIGEKDWLKLPSKELASTFHEPLIIK-----ASSRLDEVATKKLRCWVDAIVSS 143
           KVK VHLIGEKDWLKLPS+ELAS FHEPLII+        RLDEVAT++LRCWVDAIVSS
Sbjct: 61  KVKSVHLIGEKDWLKLPSEELASAFHEPLIIRHPQGHTVPRLDEVATEELRCWVDAIVSS 120

Query: 144 HDHVGDGEAKENITQKVAENIENELENSNIT 170
           H+ VGD EAKENITQK+AENIENELENSNIT
Sbjct: 121 HERVGDAEAKENITQKMAENIENELENSNIT 151

[Close]

BLAST of CmoCh06G000590 vs. ExPASy TrEMBL
Match: A0A0A0LH35 (FSH1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G813300 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.7e-43
Identity = 91/121 (75.21%), Postives = 100/121 (82.64%), Query Frame = 0


Query: 48  QGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELAST 107
           QGKVLKEHP MKMFVSI GTKFKDESICEVAYKHKIKVK VH IGEKDWLKLPS++LAS 
Sbjct: 123 QGKVLKEHPPMKMFVSISGTKFKDESICEVAYKHKIKVKSVHFIGEKDWLKLPSQQLASV 182

Query: 108 FHEPLIIK-----ASSRLDEVATKKLRCWVDAIVSSHDHVGDGEAKENITQKVAENIENE 164
           FHEPLII+        RLDE ATK+L+CWVDAI+SS DH GDGE KEN+  KV E IEN+
Sbjct: 183 FHEPLIIRHPQGHTVPRLDESATKELKCWVDAILSSRDHDGDGEVKENVIDKVDERIENQ 242

[Close]

BLAST of CmoCh06G000590 vs. ExPASy TrEMBL
Match: A0A1S3B6W5 (esterase C25G4.2-like OS=Cucumis melo OX=3656 GN=LOC103486820 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.5e-39
Identity = 84/121 (69.42%), Postives = 97/121 (80.17%), Query Frame = 0


Query: 48  QGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELAST 107
           QGKVL+EHP +KMFVSI GTKFKDESICEVAYKHKIKVK VH IGEKDWLKLPS++LAS 
Sbjct: 121 QGKVLREHPPIKMFVSISGTKFKDESICEVAYKHKIKVKSVHFIGEKDWLKLPSQQLASV 180

Query: 108 FHEPLIIK-----ASSRLDEVATKKLRCWVDAIVSSHDHVGDGEAKENITQKVAENIENE 164
           FH+PLII+        RLDE ATK+L+CWVD I+SS  H GD E KE++  KV E IEN+
Sbjct: 181 FHQPLIIRHPQGHTVPRLDESATKELQCWVDTILSSRGHDGDSEVKESVIDKVDERIENQ 240

[Close]

BLAST of CmoCh06G000590 vs. ExPASy TrEMBL
Match: A0A6J1DLE8 (dihydrofolate reductase-like OS=Momordica charantia OX=3673 GN=LOC111021534 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.7e-36
Identity = 82/123 (66.67%), Postives = 96/123 (78.05%), Query Frame = 0


Query: 48  QGKVLKEHPTMKMFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELAST 107
           QGKVLKEHP +K+ VSI G+KF+DE ICEVAYKHKI+ K VHLIGEKDWLKLPS+ELAS 
Sbjct: 120 QGKVLKEHPPIKLLVSISGSKFRDEKICEVAYKHKIEAKSVHLIGEKDWLKLPSQELASA 179

Query: 108 FHEPLIIK-----ASSRLDEVATKKLRCWVDAIVSSHDHV-GDGEAKEN-ITQKVAENIE 164
           FH+PLII+        RLDE ATK+L+CWVDA++S HDHV  D E KEN +  K+ E IE
Sbjct: 180 FHDPLIIRHPQGHTVPRLDEAATKELQCWVDAVLSGHDHVIEDEEVKENYVIDKMDEKIE 239

[Close]

BLAST of CmoCh06G000590 vs. ExPASy TrEMBL
Match: A0A5A7TR68 (Esterase C25G4.2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005980 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.6e-33
Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 60  MFVSIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPSKELASTFHEPLIIK---- 119
           MFVSI GTKFKDESICEVAYKHKIKVK VH IGEKDWLKLPS++LAS FH+PLII+    
Sbjct: 1   MFVSISGTKFKDESICEVAYKHKIKVKSVHFIGEKDWLKLPSQQLASVFHQPLIIRHPQG 60

Query: 120 -ASSRLDEVATKKLRCWVDAIVSSHDHVGDGEAKENITQKVAENIENEL 164
               RLDE ATK+L+CWVD I+SS  H GD E KE++  KV E IEN++
Sbjct: 61  HTVPRLDESATKELQCWVDTILSSRGHDGDSEVKESVIDKVDERIENQI 109

[Close]

BLAST of CmoCh06G000590 vs. TAIR 10
Match: AT5G65400.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 5.1e-05
Identity = 24/76 (31.58%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 47  KQGKVLKEHPTMKMFV-----SIPGTKFKDESICEVAYKHKIKVKFVHLIGEKDWLKLPS 106
           +QG  L + P +K  V      IPG  F +      A+   ++   +H IGE+D+LK+  
Sbjct: 139 EQGSALTKVPKVKFLVIISGAKIPGLMFGEPKAAVNAFSSPVRCPSLHFIGERDFLKIEG 198

Query: 107 KELASTFHEPLIIKAS 118
           + L  +F EP++I  S
Sbjct: 199 EVLVESFVEPVVIHHS 214

The following BLAST results are available for this feature:

BLAST of CmoCh06G000590 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh06G000590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I8F2	1.5e-60	82.12	uncharacterized protein LOC111470131 OS=Cucurbita maxima OX=3661 GN=LOC111470131...	[more]
A0A0A0LH35	3.7e-43	75.21	FSH1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G813300 PE=4 S...	[more]
A0A1S3B6W5	2.5e-39	69.42	esterase C25G4.2-like OS=Cucumis melo OX=3656 GN=LOC103486820 PE=4 SV=1	[more]
A0A6J1DLE8	5.7e-36	66.67	dihydrofolate reductase-like OS=Momordica charantia OX=3673 GN=LOC111021534 PE=4...	[more]
A0A5A7TR68	2.6e-33	68.81	Esterase C25G4.2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35...	[more]

BLAST of CmoCh06G000590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65400.1	5.1e-05	31.58	alpha/beta-Hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005645	Serine hydrolase FSH	PFAM	PF03959	FSH1	coord: 47..110 e-value: 4.1E-6 score: 26.6
None	No IPR available	PANTHER	PTHR48070	ESTERASE OVCA2	coord: 47..158
None	No IPR available	PANTHER	PTHR48070:SF10	OS07G0687100 PROTEIN	coord: 47..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000590.1	CmoCh06G000590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus