CmoCh06G000490 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	regulation of nuclear pre-mRNA domain-containing protein 1B-like
Location	Cmo_Chr06: 308871 .. 321258 (-)
RNA-Seq Expression	CmoCh06G000490
Synteny	CmoCh06G000490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACGAGGGTTTTGAAGCACAGGTGTTGTCTGAGAAGTTATCCAAACTCAACAATTCTCAGCAGAGCATCGAGTGTATCCTTCTCTAATCATTATCTTCTAATTTATTTTTGTGGCCTGAAAATATTGCATTGCCCGTTCTATTACACACCGGCGTTTACAGTTTTTGTTCAGATATTTTCTCCCTTTTATATATTGATTTTAAATTTTTTTCGGTGTTTATAGTCATGGATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAGAAAAACAAAGTAATGCCTTTTGTCATTTACTAATTATGTATGTAAAGAACTGGGTATGGTGGCGATTATCTATTAAAACTTTGAAGTTAGGATCTTTCTCTATATGTATTTTAAATTGTAAAAGAATTAATTGAATTTAATTTTGTGGATAGCCTCATGATTTTGTGGTTGAGATTTCTTCGATTTTGGCATGACTTCATTATTAACCTTGATTACCTATGCTTCTTATGGTTGAACATTTTCATTACTCTTGTCTGGGAACTTTGGATTGAGAGTAATTATTGCCTTTGTTCTTTCATTTTTCTGGCTATAAATTCACTAGATTAGAAGACGTTTGGGATGTGTTAGTTCTTGTGTTTAGATTGAGCCCCTTTTGAAGTCTTTTTGTAATTTATTTGTGTTGGTACATACTGATTAAAGAACGGTTCTTATACTGTTGACTCATGGAAGAATGTTTTGTGCTCAAATATATCCTCAAAAAATTTCTGATGGTGGGTGCAACTGTAATGAATTTGTTTTTCTTTGATATTGAATTAGCTTTATCAAGATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTTGAAACATGGGATAAATTATTCAACTCATCTCAGAAAGATCAGCGTGTTTCGTTTCTTTATTTGGCAAATGACATTTTGCAAAACAGCAGGCGCAAGGGAAGTGAATTTGTGAACGAATTCTGGAAAGTTCTTCCTGTTTCTCTCAAGTATGTTTATGATCATGGGGATGAAAGTGGAAAGAAGGCGGTAGCAAGACTTGTATGTCCTCTTTATTCTTGTGTATAAATATGATGGCAATAAATGTTTTTATGTTTTTATTTGTGGAAGCATCTTAGTTGACTCTGGAACATATTGCTGAAATGTAAATCATTTTTCATTTGTGAAAAAAGAAATGAAGAAATGGTGAAGACGGAAAACAGAAAAGGGAGGATGGATTTCATCATTTGGCCTGACAAATTTGTATCATAAACATTTATATTTAGGCTTCTCAAAGGTTGAACTGCTTTATTAGTCACATTGGTAATAGAACTCTCAATTCTACTTATAGCAGTCTTCTGATTGGTGTTTCATGAGTACTGAGGGTGGTCAGTTGGTGCTAATTCCTAAAGCTTGTATATTAGTTAGGAATAATCTAGTAAATTCCTGATATGTGGGTTTAAAACTTGAGTTTGAAGCATAATATGTGGTACTTTTTCTTTCCCCTTTTGCCCCCCCATTCCTAGACGTGAATGTAGGTTTCTTTATAAAACAACTTTTGTTTAAAATAGTTATAATCATAATTAATTTTTTTTTGATAAATAAAGGACCTGTTCGTGAGGGGTAGATAAATCCTTGACTTGATCTTATTGTAAATAAATCTATTAATGAGAGAAGAAAGGAAACTGAGATCTAAAATTTGTCTTCCAAAAAGCTTACTATTTAATGGGTACACCCATAAAGATTGATATAAAAGAAAGTGGTGATTGAGTCTAATTGAAATAAATTCTTTAGTTTGGATGGATTCACAATGGTTTTTATTTCAAGAGAGTTGGGAGTGTGTTAAGGAGGATGATTGGAAGGTCTTTTAAGTTTTACATTGATGTTCTACTGATGAGGCCTATGTTTTCCTTGTACTGAGAAGACAAAAGAGTGTAGGGTTAAAGGACTCTAGGCCAATAAGTTTTTTTATAAGTTTAAATGAGATTATTGTTCCGACATTAGCAAATAGACTGAGAAATGTCTTCCCTAACACGATTTCAGACTCCCAAGGAGCTTTTGTAGTAGAGAGACAATATGGATCGGGTGTTGATTGTCAATGAGGCTTTTGAGGATCACAATCAAGAGGGTGTCATTCTTAAGATTAATTTTGGTTAAGCTTATGTTCATGTGGATTTGAGATTTCTTAGATAAAGATCTCTAGAAAGAAGTCTTTGTGTTTAAATGTTGGTTGTGGATTTGAAGATGTATTAGTATGGTTAATTTCTCTATCATGTTTATGTTGATTTAAGATTTCTTAGATAAGGATCTCTAGAAGGAAGTCTTTGTGTTTAAATGGAGGTTGTGGATTTGAAGATGTATTAGGATGGTGAATATCTCTATCCTTATCAATAGTTAACCTGACAGAGGTTCAAGCCCCTACAAATCTTAAGCAAGGTGATCCCCCACTCCATTCCTCTTCATTTTGGTCATTGACATCTTGAGTAGGTTGGTTTATCAAGACACTTCTTGAAACCCTTAGGAAGATATTTTTGCTGAGCTTCTTTACCTTTCTCAATTTGTTCATTGTTTGATAAGTGATGAGAAGGATACCTACTTTTGGGAGTATAAGTGGTTGGGGGATAGGTTCTATTGCTCTTTGTTTTCTAGTTTATATCAGTTATCCTCTCTGAGAAACCAATCGGTAGGCACTGTCCTTTCTCATCCTAAGTGCTTTCTTTTGCCTCTGTTGGGGTTTTGTTGTTTGTTGTCTGACAGGGAAACAATATATGTTTGGCCTTTTATCTATGATGGGAGAGTTTTGATTTTTTTCCCTGGGAAAATGGATGTTCGTCTTTGGAATCCTAGTTAGTCCGAAGTTTTTTTCTTGTAGTTCCTTCTTTCCTTGTTTGGTAAGTCCCTCCCTTCTAGCATCTCTTTCTTTTGTTGTCGTGGAAGGTGGGAACTTTCTAGAAGGTTAAATTCTTCGTGTGACCGGTCATGCACAAAAAAGTTGACCATTTGGATTGGACCTCAAGGAAGATGTGCAGCTTGGTTGGGACGCTTTGTTGCATTCTTTGGAGGAGGTGTTTGGGGACCTTGATTTGCTTTGTTAAATACTAGTTGTGCATATTGTAACTTTGGACTAGTTAAATAATTCAATCTTTTTTATTAAAAATCTTTTTATGCTTTCATAGAGTGTGTGGAAGTTTATACAATTTGTTTTTTGGTTACAGATTACGATTGATTGACATTTTGTTCTAAATTATCCTCACGTACATTTTTGTTTTTTATATGTTGCTTGAAATCCACTATCAACTGTGTGCATGGCTCTGTAATGTTAACAAAAATTGCAATAATAAGATTGACCAGTTCCCCCCTCCCCCTTTGTCATGACAGTATCTCTGAATGTTATTTCGTAAGTTGGGATTTCATTTGTCTCACTGATTTTTCTCACTTGTTTCCCTTCATGGGAGTTTGTTTGTTAAGGTCGATATTTGGGAAGAACGAAAGGTTTTTGGTTCTCGGGGTCAGAGTCTTAAGGATGAAATGCTTGGTAAAAATCCACCTCCATTACCCAACAGCAATGGAAAGAGTTCAAATCCTATAAAGATAGTGAAGAGGGATGCCCATTCTGTGAGAATTGTAAGACTATTGCAGTTTTCCATTTGATTTCTTGTGTTCAGACCTCTATAATCTTTATTGCTCAACTCTAGAAACTGGCTGTTGGAGGTGTTCCGGAAAAGATTCTTACTGCATTTCAATCTGTACTTGATGAACATTTGAATGAAGATGCTGCTCTCAACAACTGTAGTTCTGCAACTCATCATCTGAACCAAATTGAGGAAGACTTGAATGCTTCCATAGCTCAAGGTATAACCTCATCTACTATAGTCATCTCATGCAATTAGTTTAAGGTGACGCTGACATGTACGCTAAGTTAGCGTACATGACAGCGTGGTTTTGAGTTTCTTTTCTAATTAGTGTTGTTTGTGTGAATTCCAACTCGTGTTACTTTTGGAATAGCTGTCATTTACCTTAAATAGCTGCAATGTTTTTCTGTTGACGGAAGCTTCTGAAGCTCTTCTGTCGTTGTTCTTATCTCCACTACTTATTGTCGCTGTATACTGAGAAGCAATACTCTAATGCTAAATGATAGGTCCGGAAGATAGTAATAGATATGGTTTTTTTTTTTTTTTTTTTTTTGAAGAAATAGAACTTTCATCATGAACAATGAAAGAATACAAAAGAGAAAACTGAGACATACATAAAGATAGCCCAAAAACAGGAACCAGCACGAAAGGGACATTAAACCTAGCTAGGGACATAAGATCTAGTGGACAGTTCCGGGACTCTTCGGTAATAGAAGCTGAAAGGGACATTAAACCTAGCTAGGGACTAAACCCCATCAATAATCTCTCCAATTCCCTAAATATCTTATTATTCTTCTCAAGCTAAATACCCCTAAAAACAACAAGAAACCAACCCTCCAAATGAACCAACCTTTATCTCGAAAGGGTGTATACAAAAGAATATCGAGAATCGTAGACTGGCAATCTCTACAGCAAGCTAGAAACCCTGAACAAAGCAAACCCAAATTCAGAGGTAAAGTCACTCCAACCTTTTCAATCTCTAAGAATTATAAAGAGGCCATACTTGCAAAATAAAATCTTTACATTTTGTTATATATGGATTTTATGATAAACTAAAAATATCAATACGTTTAATACAATGAACAAGTATCTAATTTGATGGATACATTCAATATTTAGAATTTAATTCGAAATGGTTTACCGCCATATAGTAGTTCTATTTTGGAATGGTTTACTTCTCTAAATATACTTTTTTTTCCCTATTTTCTTTTTTTAAAGAAGGTTAACTAATAGGTTCAACATTTATTAAAAAGGGATTTGAATTTCCTAACAATTTATTTAGAAGAAAAACATATTTTCTCTTTCCTCTGTTATAAAATTTGAGATGCGTATAAATCTTTTGATTTAGCTGACCCCTTATATATGACTGGTTTATGCATTCACCAAAGGGATACTTACAAATGGACTATTGTTTAAAGGGGAGTGATAAAATGGTAACTGAGGGCTTTATAGATGCGGAATGGACTAACTCTGTTTTTCTTTCCCTTTTGTTTTTCATCTTTGTTGGCACAATTTTGTAGCTCATTCCACGCTAGTGACAAATGTTCTTGTTAGAAGATGGCTAAAGTCAAAGTTCGGGTGGTTGCATGTGACATGTGAATCTCTAAAGCTAAAATAAGATTGTAGAGGAACATGAAGTATAAGGGTTTCCCTGCCAAACTTTTGTTATGACAGCATGCCTATTCTGCATGACGTGACTGTAGAAATACAATTTGATAGGAATACATTTACCAGCTATTCTATCAAACATGTAGCTGAATCTTCATGGTGGGAATGCTAAGATTCAACCTTTGTAGCCATAGTGAGCAAGCTAAGAAAGAATGATTGAAATCTTCAATCTTGGAACATTGACCAAGTCAAAGGGACATCTTACCATAAATTGTCGAACCCCATTTTTTATTTAATACATATTTTAGTTTTAAATGCCTTAATTTCCCTCTTTTGAAAGTTTGTAGATCAGTGGTCATTCTATTCTTTGGCTTATATATATAGAATTCTCCTTGCTATATTTTTATGTTTGTGTCGTAAAACCTCTTTCTTCGAGAAGTATTGTAAGAGAGTTTTTCTTTGTACTTTCCTTCCAAACTAGGAACTCAACCAAGATCAGCATTGCTGGACGACCTTCAAGAGCAGGAAAATGTGGTTCAACAATGTATTGGGCAACTTGAAAGTGTTGAGGCAACTAGGGCTTCTTTGGTTTCCTTACTTGTAGAAGCGCTTCAGGACCAAGTAATTTCTCTTCCTCTTTTTTATTTCCTCAAATAATTTCTCAAGATTCCAAGCCTCCTCTATATAGTTGACATACTTTCATTGTAAGTTGATTTCCTTGTGGAAAAATTACAGGAATCAAAGCTGGAACTAGTTCGCAATCAGTTGCAGGTAAGTTAAAGTGCTTCTTATATTTTCTTTTCTGAAATCTGTAGTAAGAGTTTATGTTTTGGGATCTCTTGTTGGCTTAAAGTAGTTTTGAAGGTGGGTCTGACATGTGATGTATTGTATACCTTGAAACCTCAGAATTTGGGAAGATATTTGGATATGTCAAAACATGAACTTCAGTATACCTTGAAACATTTAAATCAGAGTGCCAGACCTTTATATTTCTTGCACATTTAAGCATGGTGGAGGTGGCAGACACCTTGAACAAGTGAACACGATAAAACTTTGACCGTGACTATTACATTTTTCAAGAAAAATAAGACTGAATGATGTTGTTTGAAGTGTATAATTTTGTGGGGATTGATTTTGACGTTGTTTTGAGTTTGATATATTTGATCGTTTAGAACGAAATTTTTTTTGCCTTTATACATCATTAAGATGACATTAGTTATTCTTTATACATCTTATTATATTCTCTTAATGAGGAACCAAACATTCCATTGAAGAAATGAAAAGAGACTAATGTTCAAAAGATTCAAACTCCTAAGAGGGTGGGGAATTAAAAAAAAAAACAGCATCAAGGAAAAAAAAAACAAAAGCTTCCCTATTCAAACATGTCTTGCAAAGGAAAAACCCAAACAAAAACTCACTTTTTTGTACGATAAAGGTGTAGAATAAGCTCTTTTTGTGTAAATCTTCAAAGAAAGGGTGGTTAAGATCACAGAACCGCGTTATAGGAAAAAGTTCGTGTTGTTAGTTGAAGAAATCGTTTTTGTCTGAATAGTAGACTCCATTGGAGACTTGCTTCTTGTTCTCAACTCCCAAAATTCTTCTGGAAAAACAATTGCAACAATGGCTTCATTTGGATTCAGAAAATTGTAAACAAAAGAGAGATATTAAGAAACCACGAAAGTAGTTAACTCAAGGGGAAAATTCAATCTGTGGTGCCAGCGGGAGAAGAATACAGTGGATGGAAGACCTTTTAACAAATGATAATAGGTTTTCTCAACAGAAAGAAAACGGAGCAACAAAGGGAAATAAAACGTAAGTGTAGAAAGGAGAAATGTTTTGCAGAAGCTGTAAAATCGCCCCCAGAAAGGTCGGGGAGGGAGAAAAAGACAAAGAAGGAGGATTTAAAGGTGATCGAAAGGAAAGGAAGACTTGAAGAGAACCTTATCATCATTCATTTTTCAGACATTTACATCCTGAAATGCCATTATAAGGATTTAGAAGGTCGTTTGTGTCTAATGGATGAGCTTTGGACAGTTTGTTTTGAAGCTAGAGAGATGGGATGTTTGTAAACATAGTAGAATTAAGTTAGTATCCCATTATGGTGGTTGGGTGAGAATTCATAACATTCCTCTTCAATTTCCATCGAACCTGAAGATATTCAGAGCAATTTGTGGCTGTCTTGGTGGCTTGGAAGGTTATGAAGTAACTCCTTGCTCATGGATTGCTTTGATGTGGGCATTAAGATCAAGGATAAGTATTGGGGGTTTATATTAGTCAAATATTAGCCTCATCGACAGTGTGAGGACATACCAGGAGGAGAATATGCTTGTGGATAGGGTCGCCGACCTTCATGGAAGTTTCTCGCCAACCACTGCTCACGTTTATCATGGAGGACCAAAGGATCCTAATTTTAGTCTGATGGATAAATGAAGGATTGAAGGTACAAATTACCCATGCGTTAATGTTCAAAATGCTCTCGCCATAAAGATGCCAGATACGGCCCACAATTAGAGTAGGAATTTCAATATTCAGAGGGCTTCACAATAAGCAAAGAGGTAGTGCAAACTTTGGAAAAGAATAGCTATGTATCAAACCATTAATAAGGAATTCGACGAAAAAAGGTAGTGTTGCTCAAAAGAAAATAGCAGAAGAGGCGACAAGTCTTCTTAGAACTTGGGAAATGAAAGGGATGAGGAGGAGCCGAAGATAAACGTGTGGACACAGAAGTAGTTGTTGAAAGTGATATCAGGGCTCCTTAGGCATCTCAATAAAAATAATTTCGTGGAATGTGAGAGTGTGTCCCATATCTAGCATCAATAACCTGTCTTCATAAAGCATCCTCTTCGTGATAATACGTCTGAATTCACGTGGCTGATAAAGCTATATTCTTTTCTGCCAATCATTGCAAACCAAAGCCTCCATGGGAGGTAGATCTAGTGACTTTTTCCAATCTGGCTAAGTGTGATCTGGATTGAGAGGAGCTCCCTTTTCAAAGGAAATGTCTATACAGACTTTCAATATTCAATGGAACCTTCCATGGGATCTTGAAGAGAGACAAAAGTTTGTGGGAAGATTCAAGAGTGTTGCTTGCAGAGTAGGCGACGCCCGGTAGGTGTGTGATTCCATGAGTGGATCCTTTTTTCAACTTCTCTCAACAATTGGGATACAAAATGAAGAAGTTCTAGGTTTATCTGCCAATGGAAGGCAGATAGACATTTGACCAATATCCTTGTCCGCAATCGAATTTCTCGGCTATTAATCTAACCTCCTCAAATTCTGTATTGACCCAAAATCTCCGATCTCTTATGATTTGTAATCAATCCACATGCCTTTTCAAAGGAGTCAACAAGGCCAAAAAGGTTGTCAAGAGCCAAGATATATGTGGATGAGAAAAGAATGATTTCATCGGTAAAAAAAAGATGATGTATCTGAAGGAAAGCTCTTCCAATCTCAAAGCCGATTATCAAATTTATGGAGCTTGCTTCTATCATCATTCTACTAGAACATTACATGACTGCGATTTCCTTTCCACCTCCAAACAAACGTTTGAATATATAAGGAAAAGGAACATGTAGCATAAAGGCAAGTTAGAGAGAACTAAATTACAAAGTGTTGGCCTACCATCCCTCGAAAGTTTGAAGCATTTCCATGTATCCAACTTCTTCAAAATTCTTTCCTTAACGGGATGCCATAAGGATGCATTTCTGGGATGACCTCCATGGGGGAGACCAAGATATAAAAGAAGGCAAATATTCTATCTTGCAATGAAGCCTTGAAGTAACTTGATTCAACTTGACATTGTCAATATTTATCCCCCTAATTGACGACTTCTTCCTATTGATTCTGAAACCAGAAAATCTCTCATATACTTCCACTGTTTTGATTAAAATGTCCAGCATGTATCATCATATTTGCAAACTAACAATAGCATCCTAACAGTTGAAAGCTTTCTCAATGACCAGCTTCAAAATTCTACCTTTCTGTTTTTTGCCCAAAAAAAAGCTATGGGTTGCTTCATATCCATTAGCTGTCATATTCACAACTTATTTGCTCTATCATGTGATATGAACGAGTTTGAATACCAATATTACAGTTTAAACTACTAGGAGTTCAATTATTTGAGAATTTTTACTTCTTGTTTCTTTTCTCACAATAACCACTGAACCATTTTATATCAATTTTCTCAGTCATTGCTAAGCTATTTTAGGCTGTAGAAACTGAATTGTGCTGTAAATTTTATTTACCGTGAACCTTCATCAAGAATTTGGTCTGGGTCATGTCTAATGCAATTTTTAGATCGTATTTTGATTAGCAAATTTTCTCCTCAACTAGAAAATGCATTAATAGATTAAACTTCAGTTGGTTCCTTTTGGATGTGAATTGATAAGGTGGTCCTTTTTCAAGGTGTTATGAGAAGTTGGCTCAAATATTGTGGATAAAGATATAACATTTGTACTTTTATAAATTGGAACGGACTTCTTTGAGAGTGAGAGAGCAGTAAGTTTGTGTACACTGTTCATTTCCCCAAGTTTATGTACTAGCGACAGAGCACTTGGTTATGTACTATCAACTTGTTTATTGTTATCTGCCATTCACATGGACGGACATCTCATATTAGTTGTATCTCATATGTTGGGGAATGCAAAATATTAGTTAAGAGGGTTTGGTATTTTCTAATTTCAGTTTGCTTATGTTGCTTGGAAATTATTGCTTATGAATCTGCAGATAGCTCGATCTCAAATTGAGCTAGCAAGTAACGTTCGGAAGAGAATTGTGAGTCCAGTTCCTGGTCCTCTTGCTACGAACATTGATCTACTGACAGAAATGACCCATGTGACTGATGTTAAGTTACCTTCAGCTCAATCAAACACAATCTCTTCTCAGTCCCCTCTTGTCCAGGCTATGGTTTCTTCTGCTGGTCCCAAAAGCAGTGAAGAGGAAAACAAGAGAGCTGCTGCTGCTGCTGTTGCTGCAAAGTTGGCTGCTTCTACATCTTCAGCACAGATGCTTACCTCTGTTCTTTCATCTCTTGTTGCAGAAGAAGCTGCTTCCATGAATGGTGGCCTAAAATCAGCTGGGTTTGCTTCATTATCCATATTCTCTCCTGAAAAACGACAGAAACTTGAGAAGCCAATGCCGATTTCTGATAGTTCAGATGGAATTGGCGCGTCATTCGTTACACCTATGCAACAACAACAATTGACAAATGTGGCACTTGCACAATCAGCAAATATACAGCCTGTATCCCAGGCGAACCAGAGTCAAGCTTCATTTGCTCCACCACCTCCGCCAGCTCCACCAGTGAATCAATATGCTCAGTCTGGTGGAATAATGGGGGTATTACCTTATAACTTTGGAGCATATTCTCTACCACCTCCACCTCCTTTACCTCCCCATATTGTGATGGGTTTGAGTAGGCCGACGTCTCAGCCACCTCAGCAACAGCCACAGCAGCCTCAGCAGTCGCAGCCAACTTCAGCAGGATTTTACAGGCCACCAGGTATAGGTTTCTACGGGCAAGGTCAGCAGTCGACGCCACCACCTGTCCCTAGGCAGTAAGTTCCCAGGTAGAGTTTACTTGGGGCAAATGTTCAATTAAAGGATTAATAGCTTTAAACAGGTTAAATTAGGCATTCACATTTCTACTTGCCATCTGAGAGTTCATTTCAGAATATGTATTATCATGTAAATTAGTAGAACTTTTTTTTGGTTCTGTAGAAGCTTTAGTATATGTCCATCTCCTGCCAACAAGTTAAAAGGGCATGTTGCAGCTGAGGTTCGTCCAATGCTGATGGAAGAATTAAGTGGCTAGATTTAGGCTTTTCCAATGTAATGCTATCGAAAACTGGAAACCTCGGTGAATTCTCGGCTGCCTCGAAATTTTACTATGGCCAGGTAATCTTTTCTCCAATTAGATTGGAAGTTGGGTAGAGTGCCTCCTAGCAGAATTTTAGTTGACAACGTTAGATTTAGCTTTGAAGACACTGTTGCCTCTAAATCTGCATGGATGGATAGAGAGAGGCTAAATGGACTTGTTTTGGATAGTCATAACAGGATGATACTGGTCTGTAATATAACTTAGTGAGGCCTTGGGAATTTCTAGTAGATACAGTACTGCCATGGTTCTTGTAATCTGTTGCTCTGTTGCTCTGTTTTCTGATTCAGTAGAGAATTTTTATTTAAAATAAACTGTTCCTTACCCTTCTTA

mRNA sequence

ATGAACAACGAGGGTTTTGAAGCACAGGTGTTGTCTGAGAAGTTATCCAAACTCAACAATTCTCAGCAGAGCATCGAGTCTTTATCAAGATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTTGAAACATGGGATAAATTATTCAACTCATCTCAGAAAGATCAGCGTGTTTCGTTTCTTTATTTGGCAAATGACATTTTGCAAAACAGCAGGCGCAAGGGAAGTGAATTTGTGAACGAATTCTGGAAAGTTCTTCCTGTTTCTCTCAAGTATGTTTATGATCATGGGGATGAAAGTGGAAAGAAGGCGGTAGCAAGACTTGTCGATATTTGGGAAGAACGAAAGGTTTTTGGTTCTCGGGGTCAGAGTCTTAAGGATGAAATGCTTGGTAAAAATCCACCTCCATTACCCAACAGCAATGGAAAGAGTTCAAATCCTATAAAGATAGTGAAGAGGGATGCCCATTCTGTGAGAATTAAACTGGCTGTTGGAGGTGTTCCGGAAAAGATTCTTACTGCATTTCAATCTGTACTTGATGAACATTTGAATGAAGATGCTGCTCTCAACAACTGTAGTTCTGCAACTCATCATCTGAACCAAATTGAGGAAGACTTGAATGCTTCCATAGCTCAAGGAACTCAACCAAGATCAGCATTGCTGGACGACCTTCAAGAGCAGGAAAATGTGGTTCAACAATGTATTGGGCAACTTGAAAGTGTTGAGGCAACTAGGGCTTCTTTGGTTTCCTTACTTGTAGAAGCGCTTCAGGACCAAGAATCAAAGCTGGAACTAGTTCGCAATCAGTTGCAGATAGCTCGATCTCAAATTGAGCTAGCAAGTAACGTTCGGAAGAGAATTGTGAGTCCAGTTCCTGGTCCTCTTGCTACGAACATTGATCTACTGACAGAAATGACCCATGTGACTGATGTTAAGTTACCTTCAGCTCAATCAAACACAATCTCTTCTCAGTCCCCTCTTGTCCAGGCTATGGTTTCTTCTGCTGGTCCCAAAAGCAGTGAAGAGGAAAACAAGAGAGCTGCTGCTGCTGCTGTTGCTGCAAAGTTGGCTGCTTCTACATCTTCAGCACAGATGCTTACCTCTGTTCTTTCATCTCTTGTTGCAGAAGAAGCTGCTTCCATGAATGGTGGCCTAAAATCAGCTGGGTTTGCTTCATTATCCATATTCTCTCCTGAAAAACGACAGAAACTTGAGAAGCCAATGCCGATTTCTGATAGTTCAGATGGAATTGGCGCGTCATTCGTTACACCTATGCAACAACAACAATTGACAAATGTGGCACTTGCACAATCAGCAAATATACAGCCTGTATCCCAGGCGAACCAGAGTCAAGCTTCATTTGCTCCACCACCTCCGCCAGCTCCACCAGTGAATCAATATGCTCAGTCTGGTGGAATAATGGGGGTATTACCTTATAACTTTGGAGCATATTCTCTACCACCTCCACCTCCTTTACCTCCCCATATTGTGATGGGTTTGAGTAGGCCGACGTCTCAGCCACCTCAGCAACAGCCACAGCAGCCTCAGCAGTCGCAGCCAACTTCAGCAGGATTTTACAGGCCACCAGGTATAGGTTTCTACGGGCAAGGTCAGCAGTCGACGCCACCACCTGTCCCTAGGCAAAGCTTTAGTATATGTCCATCTCCTGCCAACAAGTTAAAAGGGCATGTTGCAGCTGAGGTTCGTCCAATGCTGATGGAAGAATTAAGTGGCTAGATTTAGGCTTTTCCAATGTAATGCTATCGAAAACTGGAAACCTCGGTGAATTCTCGGCTGCCTCGAAATTTTACTATGGCCAGGTAATCTTTTCTCCAATTAGATTGGAAGTTGGGTAGAGTGCCTCCTAGCAGAATTTTAGTTGACAACGTTAGATTTAGCTTTGAAGACACTGTTGCCTCTAAATCTGCATGGATGGATAGAGAGAGGCTAAATGGACTTGTTTTGGATAGTCATAACAGGATGATACTGGTCTGTAATATAACTTAGTGAGGCCTTGGGAATTTCTAGTAGATACAGTACTGCCATGGTTCTTGTAATCTGTTGCTCTGTTGCTCTGTTTTCTGATTCAGTAGAGAATTTTTATTTAAAATAAACTGTTCCTTACCCTTCTTA

Coding sequence (CDS)

ATGAACAACGAGGGTTTTGAAGCACAGGTGTTGTCTGAGAAGTTATCCAAACTCAACAATTCTCAGCAGAGCATCGAGTCTTTATCAAGATGGTGCATTTCCCACCGGAAAAAGGCCAAGCAGATTGTTGAAACATGGGATAAATTATTCAACTCATCTCAGAAAGATCAGCGTGTTTCGTTTCTTTATTTGGCAAATGACATTTTGCAAAACAGCAGGCGCAAGGGAAGTGAATTTGTGAACGAATTCTGGAAAGTTCTTCCTGTTTCTCTCAAGTATGTTTATGATCATGGGGATGAAAGTGGAAAGAAGGCGGTAGCAAGACTTGTCGATATTTGGGAAGAACGAAAGGTTTTTGGTTCTCGGGGTCAGAGTCTTAAGGATGAAATGCTTGGTAAAAATCCACCTCCATTACCCAACAGCAATGGAAAGAGTTCAAATCCTATAAAGATAGTGAAGAGGGATGCCCATTCTGTGAGAATTAAACTGGCTGTTGGAGGTGTTCCGGAAAAGATTCTTACTGCATTTCAATCTGTACTTGATGAACATTTGAATGAAGATGCTGCTCTCAACAACTGTAGTTCTGCAACTCATCATCTGAACCAAATTGAGGAAGACTTGAATGCTTCCATAGCTCAAGGAACTCAACCAAGATCAGCATTGCTGGACGACCTTCAAGAGCAGGAAAATGTGGTTCAACAATGTATTGGGCAACTTGAAAGTGTTGAGGCAACTAGGGCTTCTTTGGTTTCCTTACTTGTAGAAGCGCTTCAGGACCAAGAATCAAAGCTGGAACTAGTTCGCAATCAGTTGCAGATAGCTCGATCTCAAATTGAGCTAGCAAGTAACGTTCGGAAGAGAATTGTGAGTCCAGTTCCTGGTCCTCTTGCTACGAACATTGATCTACTGACAGAAATGACCCATGTGACTGATGTTAAGTTACCTTCAGCTCAATCAAACACAATCTCTTCTCAGTCCCCTCTTGTCCAGGCTATGGTTTCTTCTGCTGGTCCCAAAAGCAGTGAAGAGGAAAACAAGAGAGCTGCTGCTGCTGCTGTTGCTGCAAAGTTGGCTGCTTCTACATCTTCAGCACAGATGCTTACCTCTGTTCTTTCATCTCTTGTTGCAGAAGAAGCTGCTTCCATGAATGGTGGCCTAAAATCAGCTGGGTTTGCTTCATTATCCATATTCTCTCCTGAAAAACGACAGAAACTTGAGAAGCCAATGCCGATTTCTGATAGTTCAGATGGAATTGGCGCGTCATTCGTTACACCTATGCAACAACAACAATTGACAAATGTGGCACTTGCACAATCAGCAAATATACAGCCTGTATCCCAGGCGAACCAGAGTCAAGCTTCATTTGCTCCACCACCTCCGCCAGCTCCACCAGTGAATCAATATGCTCAGTCTGGTGGAATAATGGGGGTATTACCTTATAACTTTGGAGCATATTCTCTACCACCTCCACCTCCTTTACCTCCCCATATTGTGATGGGTTTGAGTAGGCCGACGTCTCAGCCACCTCAGCAACAGCCACAGCAGCCTCAGCAGTCGCAGCCAACTTCAGCAGGATTTTACAGGCCACCAGGTATAGGTTTCTACGGGCAAGGTCAGCAGTCGACGCCACCACCTGTCCCTAGGCAAAGCTTTAGTATATGTCCATCTCCTGCCAACAAGTTAAAAGGGCATGTTGCAGCTGAGGTTCGTCCAATGCTGATGGAAGAATTAAGTGGCTAG

Protein sequence

MNNEGFEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVSFLYLANDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFGSRGQSLKDEMLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAALNNCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQENVVQQCIGQLESVEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIVSPVPGPLATNIDLLTEMTHVTDVKLPSAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKLAASTSSAQMLTSVLSSLVAEEAASMNGGLKSAGFASLSIFSPEKRQKLEKPMPISDSSDGIGASFVTPMQQQQLTNVALAQSANIQPVSQANQSQASFAPPPPPAPPVNQYAQSGGIMGVLPYNFGAYSLPPPPPLPPHIVMGLSRPTSQPPQQQPQQPQQSQPTSAGFYRPPGIGFYGQGQQSTPPPVPRQSFSICPSPANKLKGHVAAEVRPMLMEELSG

Homology

[Close]

BLAST of CmoCh06G000490 vs. ExPASy Swiss-Prot
Match: Q9NQG5 (Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens OX=9606 GN=RPRD1B PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.6e-26
Identity = 98/305 (32.13%), Postives = 156/305 (51.15%), Query Frame = 0


Query: 6   FEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVSFLYLA 65
           F    L +KLS+L+NSQQS+++LS W I HRK A  IV  W +    ++ +++++FLYLA
Sbjct: 4   FSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLA 63

Query: 66  NDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFGSRG-Q 125
           ND++QNS+RKG EF  EF  VL  +  +V    DE  KK + RL++IW+ER V+G    Q
Sbjct: 64  NDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQ 123

Query: 126 SLKDEML-GKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKL---AVGGVPEKILTAFQSVL 185
            LK  M   K+PPP      K++   K +KR    ++ +      G    +  +A   + 
Sbjct: 124 QLKLSMEDSKSPPP------KATEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLT 183

Query: 186 DEHLNEDAALNNCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQE-------NVVQ 245
           +E +     L N +S    + Q      AS+ Q  Q  S LL+ + ++E        V +
Sbjct: 184 EELIKALQDLENAASGDATVRQ----KIASLPQEVQDVS-LLEKITDKEAAERLSKTVDE 243

Query: 246 QCI------GQLESVEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKR 293
            C+      G+L +    R  L  +LVE  Q+Q+  L     +L+  + ++   + VRK 
Sbjct: 244 ACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKE 297

[Close]

BLAST of CmoCh06G000490 vs. ExPASy Swiss-Prot
Match: Q9CSU0 (Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus OX=10090 GN=Rprd1b PE=1 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 4.6e-26
Identity = 98/305 (32.13%), Postives = 156/305 (51.15%), Query Frame = 0


Query: 6   FEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVSFLYLA 65
           F    L +KLS+L+NSQQS+++LS W I HRK A  IV  W +    ++ +++++FLYLA
Sbjct: 4   FSESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLA 63

Query: 66  NDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFGSRG-Q 125
           ND++QNS+RKG EF  EF  VL  +  +V    DE  KK + RL++IW+ER V+G    Q
Sbjct: 64  NDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQERSVYGGEFIQ 123

Query: 126 SLKDEML-GKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKL---AVGGVPEKILTAFQSVL 185
            LK  M   K+PPP      K++   K +KR    ++ +      G    +  +A   + 
Sbjct: 124 QLKLSMEDSKSPPP------KAAEEKKSLKRTFQQIQEEEDDDYPGSYSPQDPSAGPLLT 183

Query: 186 DEHLNEDAALNNCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQE-------NVVQ 245
           +E +     L N +S    + Q      AS+ Q  Q  S LL+ + ++E        V +
Sbjct: 184 EELIKALQDLENAASGDATVRQ----KIASLPQEVQDVS-LLEKITDKEAAERLSKTVDE 243

Query: 246 QCI------GQLESVEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKR 293
            C+      G+L +    R  L  +LVE  Q+Q+  L     +L+  + ++   + VRK 
Sbjct: 244 ACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKEVLSEKEKKLEEYKQKLARVTQVRKE 297

[Close]

BLAST of CmoCh06G000490 vs. ExPASy Swiss-Prot
Match: Q5ZM30 (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Gallus gallus OX=9031 GN=RPRD1A PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-23
Identity = 52/114 (45.61%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 6   FEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVSFLYLA 65
           F    L  KLS+L+NSQQS+++LS W I HRK +  IV  W++    ++ +++++FLYLA
Sbjct: 4   FSEAALERKLSELSNSQQSVQTLSLWLIHHRKHSALIVSVWERELRKAKPNRKLTFLYLA 63

Query: 66  NDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVF 120
           ND++QNS+RKG EF  +F  V+  + K+V    DES KK   R++ IWEER V+
Sbjct: 64  NDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSESDESCKKHPGRVLSIWEERSVY 117

[Close]

BLAST of CmoCh06G000490 vs. ExPASy Swiss-Prot
Match: Q0P5J9 (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus OX=9913 GN=RPRD1A PE=2 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-22
Identity = 82/291 (28.18%), Postives = 150/291 (51.55%), Query Frame = 0


Query: 6   FEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVSFLYLA 65
           F    L +KLS+L+NSQQS+++LS W I HRK ++ IV  W++    ++ +++++FLYLA
Sbjct: 4   FSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLA 63

Query: 66  NDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFGSRG-Q 125
           ND++QNS+RKG EF  +F  V+  + K+V    DES KK + R++ IWEER V+ +   +
Sbjct: 64  NDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLE 123

Query: 126 SLKDEMLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSV--LDE 185
            LK  + G   P             + +K D +     L     P + L   +++  L+ 
Sbjct: 124 QLKQALYGDKKP--------RKRTYEQIKVDENENCSSLGSPSEPPQTLDLVRALQDLEN 183

Query: 186 HLNEDAALN-NCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQENVVQQCIGQLES 245
             + DAA++   +S    + ++      +  +  +  S +++D      ++    G+L +
Sbjct: 184 AASGDAAVHQRIASLPVEVQEVSLLDKITDKESGERLSKMVEDAC---MLLADYNGRLAA 243

Query: 246 VEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIVSPV 293
               R  L  +L + L+ Q+  L    ++L+  + ++   S VRK + S +
Sbjct: 244 EIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYKRKLARVSLVRKELRSRI 283

[Close]

BLAST of CmoCh06G000490 vs. ExPASy Swiss-Prot
Match: Q96P16 (Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens OX=9606 GN=RPRD1A PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-22
Identity = 82/291 (28.18%), Postives = 150/291 (51.55%), Query Frame = 0


Query: 6   FEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVSFLYLA 65
           F    L +KLS+L+NSQQS+++LS W I HRK ++ IV  W++    ++ +++++FLYLA
Sbjct: 4   FSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLA 63

Query: 66  NDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFGSRG-Q 125
           ND++QNS+RKG EF  +F  V+  + K+V    DES KK + R++ IWEER V+ +   +
Sbjct: 64  NDVIQNSKRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLE 123

Query: 126 SLKDEMLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSV--LDE 185
            LK  + G   P             + +K D +     L     P + L   +++  L+ 
Sbjct: 124 QLKQALYGDKKP--------RKRTYEQIKVDENENCSSLGSPSEPPQTLDLVRALQDLEN 183

Query: 186 HLNEDAALN-NCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQENVVQQCIGQLES 245
             + DAA++   +S    + ++      +  +  +  S +++D      ++    G+L +
Sbjct: 184 AASGDAAVHQRIASLPVEVQEVSLLDKITDKESGERLSKMVEDAC---MLLADYNGRLAA 243

Query: 246 VEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIVSPV 293
               R  L  +L + L+ Q+  L    ++L+  + ++   S VRK + S +
Sbjct: 244 EIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYKRKLARVSLVRKELRSRI 283

[Close]

BLAST of CmoCh06G000490 vs. ExPASy TrEMBL
Match: A0A6J1FGC3 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita moschata OX=3662 GN=LOC111445436 PE=4 SV=1)

HSP 1 Score: 1027.3 bits (2655), Expect = 2.4e-296
Identity = 549/549 (100.00%), Postives = 549/549 (100.00%), Query Frame = 0


Query: 1   MNNEGFEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVS 60
           MNNEGFEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVS
Sbjct: 1   MNNEGFEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVS 60

Query: 61  FLYLANDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFG 120
           FLYLANDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFG
Sbjct: 61  FLYLANDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFG 120

Query: 121 SRGQSLKDEMLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVL 180
           SRGQSLKDEMLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVL
Sbjct: 121 SRGQSLKDEMLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVL 180

Query: 181 DEHLNEDAALNNCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQENVVQQCIGQLE 240
           DEHLNEDAALNNCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQENVVQQCIGQLE
Sbjct: 181 DEHLNEDAALNNCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQENVVQQCIGQLE 240

Query: 241 SVEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIVSPVPGPLATNI 300
           SVEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIVSPVPGPLATNI
Sbjct: 241 SVEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIVSPVPGPLATNI 300

Query: 301 DLLTEMTHVTDVKLPSAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKLAAS 360
           DLLTEMTHVTDVKLPSAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKLAAS
Sbjct: 301 DLLTEMTHVTDVKLPSAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKLAAS 360

Query: 361 TSSAQMLTSVLSSLVAEEAASMNGGLKSAGFASLSIFSPEKRQKLEKPMPISDSSDGIGA 420
           TSSAQMLTSVLSSLVAEEAASMNGGLKSAGFASLSIFSPEKRQKLEKPMPISDSSDGIGA
Sbjct: 361 TSSAQMLTSVLSSLVAEEAASMNGGLKSAGFASLSIFSPEKRQKLEKPMPISDSSDGIGA 420

Query: 421 SFVTPMQQQQLTNVALAQSANIQPVSQANQSQASFAPPPPPAPPVNQYAQSGGIMGVLPY 480
           SFVTPMQQQQLTNVALAQSANIQPVSQANQSQASFAPPPPPAPPVNQYAQSGGIMGVLPY
Sbjct: 421 SFVTPMQQQQLTNVALAQSANIQPVSQANQSQASFAPPPPPAPPVNQYAQSGGIMGVLPY 480

Query: 481 NFGAYSLPPPPPLPPHIVMGLSRPTSQPPQQQPQQPQQSQPTSAGFYRPPGIGFYGQGQQ 540
           NFGAYSLPPPPPLPPHIVMGLSRPTSQPPQQQPQQPQQSQPTSAGFYRPPGIGFYGQGQQ
Sbjct: 481 NFGAYSLPPPPPLPPHIVMGLSRPTSQPPQQQPQQPQQSQPTSAGFYRPPGIGFYGQGQQ 540

Query: 541 STPPPVPRQ 550
           STPPPVPRQ
Sbjct: 541 STPPPVPRQ 549

[Close]

BLAST of CmoCh06G000490 vs. ExPASy TrEMBL
Match: A0A6J1I2G4 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita maxima OX=3661 GN=LOC111470291 PE=4 SV=1)

HSP 1 Score: 1012.7 bits (2617), Expect = 6.2e-292
Identity = 544/551 (98.73%), Postives = 546/551 (99.09%), Query Frame = 0


Query: 1   MNNEGFEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVS 60
           MNNEGFEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQK+QRVS
Sbjct: 1   MNNEGFEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKEQRVS 60

Query: 61  FLYLANDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFG 120
           FLYLANDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFG
Sbjct: 61  FLYLANDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFG 120

Query: 121 SRGQSLKDEMLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVL 180
           SRGQSLKDEMLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVL
Sbjct: 121 SRGQSLKDEMLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVL 180

Query: 181 DEHLNEDAALNNCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQENVVQQCIGQLE 240
           DEHLNEDAALNNCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQENVVQQCIGQLE
Sbjct: 181 DEHLNEDAALNNCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQENVVQQCIGQLE 240

Query: 241 SVEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIVSPVPGPLATNI 300
           SVEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRI SPVPGPLAT+I
Sbjct: 241 SVEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIASPVPGPLATSI 300

Query: 301 DLLTEMTHVTDVKLPSAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKLAAS 360
           DLLTEMTHVTD KL SAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKLAAS
Sbjct: 301 DLLTEMTHVTDAKLSSAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKLAAS 360

Query: 361 TSSAQMLTSVLSSLVAEEAASMNGGLKSAGFASLSIFSPEKRQKLEKPMPISDSSDGIGA 420
           TSSAQMLTSVLSSLVAEEAASMNGGLKSAGFASLSIFSPEKRQKLEKPMPISDSSDGIGA
Sbjct: 361 TSSAQMLTSVLSSLVAEEAASMNGGLKSAGFASLSIFSPEKRQKLEKPMPISDSSDGIGA 420

Query: 421 SFVTPMQQQQLTNVALAQSANIQPVSQANQSQASFAPPPPPAPPVNQYAQSGGIMGVLPY 480
           SFVTPMQQQQLTNVALAQSANIQPVSQANQSQASFAPPPPPAPPVNQYAQSGGIMGVLPY
Sbjct: 421 SFVTPMQQQQLTNVALAQSANIQPVSQANQSQASFAPPPPPAPPVNQYAQSGGIMGVLPY 480

Query: 481 NFGAYSLPPPPPLPPHIVMGLSRPTSQPPQQ--QPQQPQQSQPTSAGFYRPPGIGFYGQG 540
           NFGAYSLPPPPPLPPHIVMGLSRPTSQPPQQ  QPQQPQQSQPTSAGFYRPPGIGFYGQG
Sbjct: 481 NFGAYSLPPPPPLPPHIVMGLSRPTSQPPQQQPQPQQPQQSQPTSAGFYRPPGIGFYGQG 540

Query: 541 QQSTPPPVPRQ 550
           QQSTPPPVPRQ
Sbjct: 541 QQSTPPPVPRQ 551

[Close]

BLAST of CmoCh06G000490 vs. ExPASy TrEMBL
Match: A0A6J1DF20 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Momordica charantia OX=3673 GN=LOC111019832 PE=4 SV=1)

HSP 1 Score: 937.6 bits (2422), Expect = 2.5e-269
Identity = 505/558 (90.50%), Postives = 524/558 (93.91%), Query Frame = 0


Query: 1   MNNEGFEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVS 60
           MNNEGFEAQ+L++KLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQK+QRVS
Sbjct: 1   MNNEGFEAQLLADKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKEQRVS 60

Query: 61  FLYLANDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFG 120
           FLYLANDILQNSRRKGSEFVNEFWKVLP +LKYVYDHGD+SGKKAVARLVDIWEERKVFG
Sbjct: 61  FLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDDSGKKAVARLVDIWEERKVFG 120

Query: 121 SRGQSLKDEMLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVL 180
           SRGQSLKDEMLGKNPPPLP+SNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVL
Sbjct: 121 SRGQSLKDEMLGKNPPPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVL 180

Query: 181 DEHLNEDAALNNCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQENVVQQCIGQLE 240
           DEHLNED ALNNCSSATHHLNQIEEDLNA++AQGTQPRSALLDDLQEQE+V+QQCIGQLE
Sbjct: 181 DEHLNEDTALNNCSSATHHLNQIEEDLNATLAQGTQPRSALLDDLQEQESVIQQCIGQLE 240

Query: 241 SVEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIVSPVPGPLATNI 300
           SVEATR SLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKR+ +PVPGPLA  I
Sbjct: 241 SVEATRGSLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRLTTPVPGPLAATI 300

Query: 301 DLLTEMTHVTDVKLPSAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKLAAS 360
           DLLTEMTHV D KL S QSNTISSQSPLVQAMVS AGPK+SEEENKRAAAAAVAAKLAAS
Sbjct: 301 DLLTEMTHVADTKLTSVQSNTISSQSPLVQAMVSFAGPKTSEEENKRAAAAAVAAKLAAS 360

Query: 361 TSSAQMLTSVLSSLVAEEAASMNGGLKSAGFASLSIFSPEKRQKLEKPMPISD--SSDGI 420
           TSSAQMLTSVLSSLVAEEAASMNG LKS+GFASL IFSPEKRQKLEKPMPISD  SSD I
Sbjct: 361 TSSAQMLTSVLSSLVAEEAASMNGSLKSSGFASLPIFSPEKRQKLEKPMPISDVNSSDSI 420

Query: 421 GASFVTPMQQQQLTNVALAQSANIQPVSQANQSQASFAPPPPPAP-------PVNQYAQS 480
           G SFVT MQQQQLT+VALAQSAN+QPVSQAN SQASF PPPPPAP       PVN Y QS
Sbjct: 421 G-SFVTSMQQQQLTSVALAQSANVQPVSQANPSQASFTPPPPPAPPSLSSTTPVNPYPQS 480

Query: 481 GGIMGVLPYNFGAYSLPPPPPLPPHIVMGLSRPTSQPPQQQPQQPQQSQPTSAGFYRPPG 540
           G +MGVLPY FGAYSLPPPPPLPPHI MGL+RPTSQPPQQQPQQPQQSQPTS GFYRPPG
Sbjct: 481 GALMGVLPYGFGAYSLPPPPPLPPHIAMGLTRPTSQPPQQQPQQPQQSQPTSGGFYRPPG 540

Query: 541 IGFYGQGQQSTPPPVPRQ 550
           IGFYGQ QQSTPPPVPRQ
Sbjct: 541 IGFYGQSQQSTPPPVPRQ 557

[Close]

BLAST of CmoCh06G000490 vs. ExPASy TrEMBL
Match: A0A1S3B7H0 (regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucumis melo OX=3656 GN=LOC103486842 PE=4 SV=1)

HSP 1 Score: 899.4 bits (2323), Expect = 7.7e-258
Identity = 494/561 (88.06%), Postives = 515/561 (91.80%), Query Frame = 0


Query: 1   MNNEGFEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVS 60
           MNNE FEAQVL+EKLSKLNNSQQSIESLS+WCISHRKKAKQIVETWDKLFNSSQK+QRVS
Sbjct: 1   MNNEVFEAQVLAEKLSKLNNSQQSIESLSKWCISHRKKAKQIVETWDKLFNSSQKEQRVS 60

Query: 61  FLYLANDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFG 120
           FLYLANDILQNSRRKGSEFVNEFWKVLP +LKYVYDHGDESGKKAVARLV+IWEERKVFG
Sbjct: 61  FLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDHGDESGKKAVARLVNIWEERKVFG 120

Query: 121 SRGQSLKDEMLGKNPP--PLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQS 180
           SRGQSLKDEMLGKNPP  PLP+SNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQS
Sbjct: 121 SRGQSLKDEMLGKNPPPTPLPSSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQS 180

Query: 181 VLDEHLNEDAALNNCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQENVVQQCIGQ 240
           VLDEHLNEDAALNNCSSATHHLNQIEEDLN S+AQGTQPRS LLDDLQ+QE V+Q+CI Q
Sbjct: 181 VLDEHLNEDAALNNCSSATHHLNQIEEDLNVSLAQGTQPRSGLLDDLQDQETVIQECIRQ 240

Query: 241 LESVEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIVS-PVPGPLA 300
           LE VEATRASLVSLLVEALQDQESKLELVRNQLQ+ARSQIELASNVRKR  S   PGP A
Sbjct: 241 LEGVEATRASLVSLLVEALQDQESKLELVRNQLQVARSQIELASNVRKRFTSTTAPGPSA 300

Query: 301 TNIDLLTEMTHVTDVKLPSAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKL 360
           T IDLLTEMTHVTD KL S Q N ISSQ PLVQAM S  GPK+SEEENKRAAAAAVAAKL
Sbjct: 301 TTIDLLTEMTHVTDTKLSSVQQNIISSQPPLVQAMGSFPGPKTSEEENKRAAAAAVAAKL 360

Query: 361 AASTSSAQMLTSVLSSLVAEEAASMNGGLKSAGFASLSIFSPEKRQKLEKPMPISD--SS 420
           AASTSSAQMLTSVLSSLVAEEAASMNGGLKS+GF+SL  FSPEKRQKLEKPMPISD  SS
Sbjct: 361 AASTSSAQMLTSVLSSLVAEEAASMNGGLKSSGFSSL--FSPEKRQKLEKPMPISDVSSS 420

Query: 421 DGIGASFVTPMQQQQLTNVALAQSANIQPVSQANQSQASFAPPPPP-------APPVNQY 480
           DG+GASFV PM QQQ+T++ LAQSAN QPVSQAN SQASFAPPPPP        PPVNQY
Sbjct: 421 DGVGASFVAPM-QQQMTSMPLAQSANGQPVSQANPSQASFAPPPPPVPPSLSSTPPVNQY 480

Query: 481 AQSGGIMGVLPYNFGAYSLPPPPPLPPHIVMGLSRPTSQPPQQQPQQPQQSQPTSAGFYR 540
           AQSGG++GVLPYNFGAYSLPPPPPLPPHI MGLSRPTSQPP QQ Q PQQSQPTS+GFYR
Sbjct: 481 AQSGGLIGVLPYNFGAYSLPPPPPLPPHIAMGLSRPTSQPPPQQLQPPQQSQPTSSGFYR 540

Query: 541 PPGIGFYGQGQQSTPPPVPRQ 550
           PPGIGFYGQGQQSTPPPVPRQ
Sbjct: 541 PPGIGFYGQGQQSTPPPVPRQ 558

[Close]

BLAST of CmoCh06G000490 vs. ExPASy TrEMBL
Match: A0A6J1F335 (UPF0400 protein C337.03-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441698 PE=4 SV=1)

HSP 1 Score: 865.9 bits (2236), Expect = 9.4e-248
Identity = 483/563 (85.79%), Postives = 507/563 (90.05%), Query Frame = 0


Query: 1   MNNEGFEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVS 60
           MNNE FEAQVL EKLSKLNNSQQSIESLSRWCISHRK+AKQIVETWDKLFNSSQ++QRVS
Sbjct: 1   MNNEVFEAQVLGEKLSKLNNSQQSIESLSRWCISHRKRAKQIVETWDKLFNSSQQEQRVS 60

Query: 61  FLYLANDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFG 120
           FLYLANDILQNSRRKGSEFVNEFWKVLP +LKYVYD GDE+GKKA ARLV+IWEERKVFG
Sbjct: 61  FLYLANDILQNSRRKGSEFVNEFWKVLPGALKYVYDQGDENGKKAAARLVNIWEERKVFG 120

Query: 121 SRGQSLKDEMLGKNPP--PLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQS 180
           SRGQ+LKDEMLGK PP  PLP+SNGKSSNP KIVKRDAHSVRIKLAVGGVPE+ILTAFQS
Sbjct: 121 SRGQNLKDEMLGKYPPPTPLPSSNGKSSNPKKIVKRDAHSVRIKLAVGGVPERILTAFQS 180

Query: 181 VLDEHLNEDAALNNCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQENVVQQCIGQ 240
           VLDEHLNEDAALN+CSSATHHLNQIEEDLNAS+AQGTQPRSALLDDLQEQENV+Q+CI Q
Sbjct: 181 VLDEHLNEDAALNDCSSATHHLNQIEEDLNASLAQGTQPRSALLDDLQEQENVIQRCIRQ 240

Query: 241 LESVEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIVS-PVPGPLA 300
           LESVEATRASLVSLLVEAL DQESKLELVRNQLQIARSQIELASNVRKR  S PVPGP A
Sbjct: 241 LESVEATRASLVSLLVEALLDQESKLELVRNQLQIARSQIELASNVRKRSTSTPVPGPSA 300

Query: 301 TNIDLLTEMTHVTDVKLPSAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKL 360
           T I++ TE THV D KLPS Q N I+S    VQAM S AGPK+SE+E KRAAAAAVAAKL
Sbjct: 301 TTINVPTETTHVIDTKLPSVQQNAIASP---VQAMASFAGPKTSEDETKRAAAAAVAAKL 360

Query: 361 AASTSSAQMLTSVLSSLVAEEAASMNGGLKSAGFASLSIFSPEKRQKLEKPMPISD--SS 420
           AASTSSAQMLTSVLSSLVAEEAASMNG LKS+GFASLSIF  EKRQKLEKPMPISD   S
Sbjct: 361 AASTSSAQMLTSVLSSLVAEEAASMNGSLKSSGFASLSIFPSEKRQKLEKPMPISDVSGS 420

Query: 421 DGIGASFVTPM--QQQQLTNVALAQSANIQPVSQANQSQASFAPPPPPA-------PPVN 480
           DGIGASF+TPM  QQQQLT+V LAQSAN QPVSQAN  QASFAPPPPPA       PPVN
Sbjct: 421 DGIGASFITPMQQQQQQLTSVPLAQSANGQPVSQANPCQASFAPPPPPAPPSLSSTPPVN 480

Query: 481 QYAQSGGIMGVLPYNFGAYSLPPPPPLPPHIVMGLSRPTSQPPQQQPQQPQQSQPTSAGF 540
           QYAQSGG+MGV PY+FGAYSLPPPPPLPPHI MGLSRP SQPPQQ  QQPQ + PTSAGF
Sbjct: 481 QYAQSGGLMGVSPYSFGAYSLPPPPPLPPHIAMGLSRPMSQPPQQ--QQPQLTLPTSAGF 540

Query: 541 YRPPGIGFYGQGQQSTPPPVPRQ 550
           YRPPGIGFYGQGQQSTPPPVPRQ
Sbjct: 541 YRPPGIGFYGQGQQSTPPPVPRQ 558

[Close]

BLAST of CmoCh06G000490 vs. TAIR 10
Match: AT5G10060.1 (ENTH/VHS family protein )

HSP 1 Score: 287.3 bits (734), Expect = 2.7e-77
Identity = 212/543 (39.04%), Postives = 302/543 (55.62%), Query Frame = 0


Query: 6   FEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVSFLYLA 65
           F  Q+L +KL+KLN+SQQSIE+LS WCI +R KA+ IV TW+K F+S++ DQ+V  LYLA
Sbjct: 5   FSDQILIDKLAKLNSSQQSIETLSHWCIFNRSKAELIVTTWEKQFHSTEMDQKVPLLYLA 64

Query: 66  NDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFGSRGQS 125
           NDILQNS+R+G+EFV EFW VLP +LK +   GD++GK AVAR++ IWEER+VFGSR +S
Sbjct: 65  NDILQNSKRQGNEFVQEFWNVLPKALKDIVSQGDDNGKSAVARVIKIWEERRVFGSRSKS 124

Query: 126 LKDEMLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLA-VGGVPEKILTAFQSVLDEHL 185
           LKD MLG++ P   + + K     K  KR++ S R KLA  GGV EKI +A+  V+ E+ 
Sbjct: 125 LKDVMLGEDVPLPLDISKKRPRGSKSSKRESKSSRTKLASSGGVAEKIASAYHLVVAENS 184

Query: 186 NEDAALNNCSSATHHLNQIEEDLN--ASIAQGTQPRSALLDDLQEQENVVQQCIGQLESV 245
           NE+A +N C SA   + ++E+D+    S A+    R +L  +L+E+E +++QCI +L+SV
Sbjct: 185 NEEAEMNKCKSAVKRIRKMEKDVEEACSTAKDNPKRKSLAKELEEEEYLLRQCIEKLKSV 244

Query: 246 EATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIVSPVPGPLATNIDL 305
           + +R+SLV+ L +AL++QES+L+ ++ Q+Q+A+ Q E A N++KR+          N + 
Sbjct: 245 QGSRSSLVNQLKDALREQESELDNLKAQIQVAKEQTEEAQNMQKRL----------NDED 304

Query: 306 LTEMTHVTDVKLPSAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKLAASTS 365
            T         +     NT S Q+                    +   A++AA L ASTS
Sbjct: 305 YTSKQTTAATTITETNDNTKSGQA-------------------SKMTPASIAAMLTASTS 364

Query: 366 SAQMLTSVLSSLVAEEAASMNGGLKSAGFASLSIFSPEKRQKLEKPMPISDSSDGIGASF 425
           S  ++ SVLSS  AE  A+   GL                 K E  +P+SD         
Sbjct: 365 SHMIMQSVLSSFAAE--ATKTSGL----------------SKSESTVPVSD--------- 424

Query: 426 VTPMQQQQLTNVALAQSANIQPVSQANQSQASFAPPPPP----APPVNQYAQSGGIMGVL 485
                    TN +     N Q  +   Q Q    P PPP     PPV     + G + ++
Sbjct: 425 ---------TNASFPSYNNSQNQTPTTQGQYHVIPNPPPPQFLKPPVMNNPYAFGNIPLM 469

Query: 486 PYNFGAYSLPPPPPLPPHIVMGLSRPTSQPPQQQPQQPQQSQPTSAGFYRPPGIGFYGQG 542
           P       LPPPPP PPH++ G  +P  Q PQ    Q  Q  PT    ++PPGI +YG  
Sbjct: 485 P-----PGLPPPPP-PPHLI-GNQQP--QIPQSNSAQQSQQGPT----FQPPGIMYYGAP 469

[Close]

BLAST of CmoCh06G000490 vs. TAIR 10
Match: AT3G26990.1 (ENTH/VHS family protein )

HSP 1 Score: 270.0 bits (689), Expect = 4.4e-72
Identity = 216/564 (38.30%), Postives = 305/564 (54.08%), Query Frame = 0


Query: 6   FEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVSFLYLA 65
           F AQ+L EKL+KLNNSQ SIE+LS WCI H  KAK +VETW + F+ + ++QR+++LYLA
Sbjct: 5   FNAQILVEKLAKLNNSQASIETLSHWCIFHMNKAKHVVETWGRQFHCAPREQRLAYLYLA 64

Query: 66  NDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFGSRGQS 125
           NDILQNSRRKGSEFV EFWKVLP +L+ + ++GD+ G+K+  RLV+IWEERKVFGSRGQ 
Sbjct: 65  NDILQNSRRKGSEFVGEFWKVLPDALRDMIENGDDFGRKSARRLVNIWEERKVFGSRGQI 124

Query: 126 LKDEMLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLAV------GGVPEKILTAFQSV 185
           LK+E+LG+ P      NG          R+ + V +KL+V      G   EK+++A + +
Sbjct: 125 LKEELLGRQP-----ENG---------TRNGNLVPLKLSVPQRQVNGSTLEKVVSAVEVL 184

Query: 186 LDEHLNEDAALNNCSSATHHLNQIEEDLNASIAQGTQPRSALLDDLQEQENVVQQCIGQL 245
               ++EDA +   ++A  +L +  +++   ++ G  P  A++ +LQ Q  +++ CI QL
Sbjct: 185 HGVQIDEDALVGKSTNAAGYLEKATQEVERDLSSGHAPGPAVVKELQGQHVILRDCIEQL 244

Query: 246 ESVEATRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIV--SPVPGPLA 305
            ++E +R SL+S L EALQ+QE KLE VRN LQIAR Q +   ++ ++++       P A
Sbjct: 245 GAMETSRTSLISHLREALQEQELKLEQVRNHLQIARFQSDRTGDLCRQLLDHGGSSQPPA 304

Query: 306 TNIDLLTEMTHVTDVKLPSAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKL 365
           T  +   E+  V+     + QS T S        M +S  P  S E+ ++ AAAAV AKL
Sbjct: 305 TEEEESKEVIKVSST-AAAPQSFTHSDVEQSAPVMFAS-NPTQSLEDPRKTAAAAVVAKL 364

Query: 366 AASTSSAQMLTSVLSSLVAEEAASMNGGLKSAGFASLSIFSPEKRQKLEKPMPISDSSDG 425
            ASTSSA+ML+ VLSSL +E     N         S   F PEKR KL+           
Sbjct: 365 TASTSSAEMLSYVLSSLASEGIIGNNNPPAVTETLSSVDFPPEKRPKLQNH--------- 424

Query: 426 IGASFVTPMQQQQLTNVALAQSANIQPVSQANQSQASFAPPPPPAPPVNQYAQSGGIMGV 485
              S+++P  Q   T    + S   QP+           PPPPP     Q+ Q       
Sbjct: 425 -DQSYLSPHHQNTATT---SSSTPPQPL-----------PPPPPFQLQPQFLQ------- 484

Query: 486 LPYNFGAYSLPPPPPL---PPHIVMGLSRPTSQPPQQQ--------PQQPQQSQPTSAGF 545
                    L PP P+   P +  +  S  T+Q  QQ+         Q    S P+   +
Sbjct: 485 --------PLQPPGPVNHTPFNYTIATSTATTQQQQQEQGPWVPGLTQLSTTSAPSENSY 513

Query: 546 YRPPG-IGFYGQGQQSTPPPVPRQ 550
            +  G  GFYG        PV RQ
Sbjct: 545 QKFQGQDGFYGINSSVPITPVTRQ 513

[Close]

BLAST of CmoCh06G000490 vs. TAIR 10
Match: AT5G65180.1 (ENTH/VHS family protein )

HSP 1 Score: 260.4 bits (664), Expect = 3.5e-69
Identity = 179/464 (38.58%), Postives = 268/464 (57.76%), Query Frame = 0


Query: 6   FEAQVLSEKLSKLNNSQQSIESLSRWCISHRKKAKQIVETWDKLFNSSQKDQRVSFLYLA 65
           F  ++L + L+KLN++QQSI++LS+WCI HR +A+ +V TW+K F+S+Q  Q+V  LYLA
Sbjct: 5   FSEEILIDNLAKLNSTQQSIQTLSQWCIVHRSEAELVVTTWEKQFHSTQIGQKVPLLYLA 64

Query: 66  NDILQNSRRKGSEFVNEFWKVLPVSLKYVYDHGDESGKKAVARLVDIWEERKVFGSRGQS 125
           NDILQNS+R+G+EFV EFWKVLP +LK +   GD+ GK  V+RLV+IWEER+VFGSR +S
Sbjct: 65  NDILQNSKRQGNEFVQEFWKVLPGALKDIVSLGDDYGKGVVSRLVNIWEERRVFGSRSKS 124

Query: 126 LKDEMLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLN 185
           LKD ML +  PP  + + K     K  KRD+ S + KL+ GGV EKI++AF  V  E+ N
Sbjct: 125 LKDVMLSEEAPPPLDVSKKRFRGSKSAKRDSKSTKTKLSSGGVSEKIVSAFNLVRAENSN 184

Query: 186 EDAALNNCSSATHHLNQIEEDLNASIAQGTQPR-SALLDDLQEQENVVQQCIGQLESVEA 245
           E+  +N C SA   + ++E+D+  + +    PR  +L  +L+E+EN+++Q + +L+SVE 
Sbjct: 185 EETEMNKCKSAVRRIRKMEKDVEDACSTAKDPRKESLAKELEEEENILRQSVEKLKSVEE 244

Query: 246 TRASLVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIVSPVPGPLATNIDLLT 305
           +R SLV+ L EAL++QES+LE +++Q+Q+A+ Q E A N++KR+                
Sbjct: 245 SRTSLVNHLREALREQESELENLQSQIQVAQEQTEEAQNMQKRL---------------- 304

Query: 306 EMTHVTDVKLPSAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKLAASTSSA 365
                 + + P   +N  S QS  +                  A+ AA+A  L +ST+S+
Sbjct: 305 ------NNETPVNNNNGTSGQSAKITP----------------ASIAAMAEMLTSSTNSS 364

Query: 366 QMLTSVLSSLVAEEAASMNGGLKSAGFASLSIF--SPEKRQKLEKPMPISDSSDGIGASF 425
            ++ SVLSS  AE  A+   GL  +  +  + F   P  +Q    P P +      G   
Sbjct: 365 MIMHSVLSSFAAE--ATQTSGLTKSNTSDTNAFVVPPNPQQYHIIPNPAASQQFPYGFGN 424

Query: 426 VTPMQQQQL------TNVALAQSANIQPVSQANQSQ--ASFAPP 459
           +  M    L      T      + N QP +   Q+Q   SF PP
Sbjct: 425 IPLMPPGALPPPPPGTLPPHMMNNNNQPNAAQQQAQQGQSFHPP 428

[Close]

BLAST of CmoCh06G000490 vs. TAIR 10
Match: AT5G65180.2 (ENTH/VHS family protein )

HSP 1 Score: 107.8 bits (268), Expect = 2.9e-23
Identity = 105/340 (30.88%), Postives = 168/340 (49.41%), Query Frame = 0


Query: 130 MLGKNPPPLPNSNGKSSNPIKIVKRDAHSVRIKLAVGGVPEKILTAFQSVLDEHLNEDAA 189
           ML +  PP  + + K     K  KRD+ S + KL+ GGV EKI++AF  V  E+ NE+  
Sbjct: 1   MLSEEAPPPLDVSKKRFRGSKSAKRDSKSTKTKLSSGGVSEKIVSAFNLVRAENSNEETE 60

Query: 190 LNNCSSATHHLNQIEEDLNASIAQGTQPR-SALLDDLQEQENVVQQCIGQLESVEATRAS 249
           +N C SA   + ++E+D+  + +    PR  +L  +L+E+EN+++Q + +L+SVE +R S
Sbjct: 61  MNKCKSAVRRIRKMEKDVEDACSTAKDPRKESLAKELEEEENILRQSVEKLKSVEESRTS 120

Query: 250 LVSLLVEALQDQESKLELVRNQLQIARSQIELASNVRKRIVSPVPGPLATNIDLLTEMTH 309
           LV+ L EAL++QES+LE +++Q+Q+A+ Q E A N++KR+                    
Sbjct: 121 LVNHLREALREQESELENLQSQIQVAQEQTEEAQNMQKRL-------------------- 180

Query: 310 VTDVKLPSAQSNTISSQSPLVQAMVSSAGPKSSEEENKRAAAAAVAAKLAASTSSAQMLT 369
             + + P   +N  S QS  +                  A+ AA+A  L +ST+S+ ++ 
Sbjct: 181 --NNETPVNNNNGTSGQSAKITP----------------ASIAAMAEMLTSSTNSSMIMH 240

Query: 370 SVLSSLVAEEAASMNGGLKSAGFASLSIF--SPEKRQKLEKPMPISDSSDGIGASFVTPM 429
           SVLSS  AE  A+   GL  +  +  + F   P  +Q    P P +      G   +  M
Sbjct: 241 SVLSSFAAE--ATQTSGLTKSNTSDTNAFVVPPNPQQYHIIPNPAASQQFPYGFGNIPLM 300

Query: 430 QQQQL------TNVALAQSANIQPVSQANQSQ--ASFAPP 459
               L      T      + N QP +   Q+Q   SF PP
Sbjct: 301 PPGALPPPPPGTLPPHMMNNNNQPNAAQQQAQQGQSFHPP 300

The following BLAST results are available for this feature:

BLAST of CmoCh06G000490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9NQG5	4.6e-26	32.13	Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens OX=9...	[more]
Q9CSU0	4.6e-26	32.13	Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus OX=1...	[more]
Q5ZM30	2.2e-23	45.61	Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Gallus gallus OX=...	[more]
Q0P5J9	2.4e-22	28.18	Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus OX=991...	[more]
Q96P16	2.4e-22	28.18	Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Homo sapiens OX=9...	[more]

BLAST of CmoCh06G000490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGC3	2.4e-296	100.00	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita mo...	[more]
A0A6J1I2G4	6.2e-292	98.73	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucurbita ma...	[more]
A0A6J1DF20	2.5e-269	90.50	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Momordica ch...	[more]
A0A1S3B7H0	7.7e-258	88.06	regulation of nuclear pre-mRNA domain-containing protein 1B-like OS=Cucumis melo...	[more]
A0A6J1F335	9.4e-248	85.79	UPF0400 protein C337.03-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of CmoCh06G000490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10060.1	2.7e-77	39.04	ENTH/VHS family protein	[more]
AT3G26990.1	4.4e-72	38.30	ENTH/VHS family protein	[more]
AT5G65180.1	3.5e-69	38.58	ENTH/VHS family protein	[more]
AT5G65180.2	2.9e-23	30.88	ENTH/VHS family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 225..245
None	No IPR available	COILS	Coil	Coil	coord: 250..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 491..558
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 445..467
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 535..556
None	No IPR available	PANTHER	PTHR12460	CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN	coord: 1..549
None	No IPR available	PANTHER	PTHR12460:SF21	RNA POLYMERASE II-BINDING DOMAIN PROTEIN	coord: 1..549
None	No IPR available	CDD	cd16981	CID_RPRD_like	coord: 9..131 e-value: 4.65472E-60 score: 193.566
IPR006569	CID domain	SMART	SM00582	558neu5	coord: 10..131 e-value: 4.6E-41 score: 152.4
IPR006569	CID domain	PFAM	PF04818	CID	coord: 10..121 e-value: 1.2E-34 score: 119.1
IPR006569	CID domain	PROSITE	PS51391	CID	coord: 3..135 score: 47.376923
IPR008942	ENTH/VHS	GENE3D	1.25.40.90		coord: 4..131 e-value: 4.3E-41 score: 141.9
IPR008942	ENTH/VHS	SUPERFAMILY	48464	ENTH/VHS domain	coord: 2..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000490.1	CmoCh06G000490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing