CmoCh06G000430 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	remorin 4.1-like
Location	Cmo_Chr06: 278494 .. 280535 (+)
RNA-Seq Expression	CmoCh06G000430
Synteny	CmoCh06G000430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATAATTCCCAAATTTCAAATCAAACAAACTATTCATTTTGGAATTATATTCTCAAAGGGACTCTTTCTCTCTTTCCCCTTCCTTCACTCAAAATCTTCTCATTACTCATAAAAACACACTCTGCAATCTTCAATTCCCACCATGTTCAACGATCAAGCACTACCAGCAGGAACCTCCAGACCTACTCATGCCGGAGACGATGAAGATCAAATCCGCGAAATCCACGCTCTGACTCCCACACCACCACCGCCGGTGACGGAGAATCGGAACCGCCGCGGAGAGGCTTGGGAAACGGCGAGCCAGAGATCGACTTCAATGGCGAGCGAAGGCGCTTCCAGTGAGAATTTTACTTCCATAAGTAGAGAGTTCAATGCTCTGGTGATCGCCGGCGCGGAGATCGGTGACGGTTATCGCCAGGACCGGCCGATTAACGAAGCTCCGAATAACTTGAGCAGGATTGGAGAGGAAGATCAGGCTACGCCTGAGGAGGAGACGAATCCGTTGGCGATCGTACCGGACGGTCATCCGTTTGATGATCAATTAACGCCGTCGTCAATCACAAGACAGGAGAACAATAGCGGCGGAGGAGCAGCAGCGACAAGAGAGATTTCGTTGCAGATGGTGAAGAAGGAGGAGGTGGAGACGAAGATTAGCGCATGGCAGAACGCGAAGATTGCAAAGATTAACAATCGGTTCAAGAGAGAAGATGCAGTGATCAGTGGATGGGAGAGGGAGCAGGTTCAGAAGGCATCTTCGTGGATGAAGAAGGTCGAGGTACGTGATTTGAAATTGAAAATGGCGATTTCTGTTTGAAGTAATGCGTTGTGTTAGTTGATAGATTGATTCAATAATTAATTGCTCTACTTTGTTTTTAGAGGTCATTCATGATCAATTAGTGTTATTGCATGAGTGTGGTTGAACATGTGAACGTTTTTTTCAATCTGATTCACTTTTTAACCACAACTTTCCTTCCTATTTCATTCTACTTTTTCACCTTTTCAATATTCTATTTTTCTCTCTCTAAAATCTGAGTAAAAAACACGTTTAGTTTTACCGTCCTTTTTTGAAAAATTCCTTTGGTTGATTCTTCAATACAAGTCTAGATTCATTTGAAACCTAACGCATCATCATCTACTACAAGAAGTGAAAATCACTTTTGATTTCTAAATTTTTTGTGAAACTAATAGCGTGCTTCTGGAATGTAGAACAATTTAGTTTTAAACTCAGCTGTTCACTTTAAATTCTGCCACACTTTGTTTGTTATAGTGAGACATATTATTCAAATCATTAATTTGATACCAAATGTGTTAAGAAACGATGTTACCTAATAACCAAAATTAACACTTAATTTAGATAAGAGTTTTCATAGAAGATGATTAAGTTAAATAAAAATAACATGAAAATTTGAAAGATAAAAAGAATGAACATATAGTTCCATGATCCATACATTATGAATGGGATGAAGTGAGAATTTGAATATTATGTGCAGAGGAGGTTGGAAGAGAGGAGGGCAAAAGCGCTTGAAAAGATGGAGAATGAAGTAGCGAAGGCGCGCAGAAAAGCAGAGGAAAGAAGAGCATCGGCTGAGGCCAAGAGGGGAACAAAAGTTGCGAAGGTCACTGAAATATCAAACTTGATGAGAGCAGTTGGAAGGCCACCAGCCAAGCGCTCCTTCTTCTGAATTCCTCTCTCTTTTGATGAGAGCAGTTGGAATTTGTTTCACTTTGTAATTAATTAAGGAGATGGATAATCAAAACCCTCCAAAAACAGTTTTACATTTTTCTTTTACTTGAAAGAACAAAGGAAAGCTATATTATACATCGTCTCTACCAAGATCAAATCTTGGTTTCTAGTTGGTTTAGTTTAAGAACTTGTAAGTAAGAATTGATCTTGGTTTCTAGTTGGTTTAGTTTAAGAACTTGTAAGTAAGAAATGGGCAATTAGTCTGTGTGTTTATACAAGGTTGTCTTTACAAGACTTCTTTTAGTTGTTACGGGTCAATAATTGATCTCGGACGATCATCTTTTTGCGTAGTAATAG

mRNA sequence

TAATAATTCCCAAATTTCAAATCAAACAAACTATTCATTTTGGAATTATATTCTCAAAGGGACTCTTTCTCTCTTTCCCCTTCCTTCACTCAAAATCTTCTCATTACTCATAAAAACACACTCTGCAATCTTCAATTCCCACCATGTTCAACGATCAAGCACTACCAGCAGGAACCTCCAGACCTACTCATGCCGGAGACGATGAAGATCAAATCCGCGAAATCCACGCTCTGACTCCCACACCACCACCGCCGGTGACGGAGAATCGGAACCGCCGCGGAGAGGCTTGGGAAACGGCGAGCCAGAGATCGACTTCAATGGCGAGCGAAGGCGCTTCCAGTGAGAATTTTACTTCCATAAGTAGAGAGTTCAATGCTCTGGTGATCGCCGGCGCGGAGATCGGTGACGGTTATCGCCAGGACCGGCCGATTAACGAAGCTCCGAATAACTTGAGCAGGATTGGAGAGGAAGATCAGGCTACGCCTGAGGAGGAGACGAATCCGTTGGCGATCGTACCGGACGGTCATCCGTTTGATGATCAATTAACGCCGTCGTCAATCACAAGACAGGAGAACAATAGCGGCGGAGGAGCAGCAGCGACAAGAGAGATTTCGTTGCAGATGGTGAAGAAGGAGGAGGTGGAGACGAAGATTAGCGCATGGCAGAACGCGAAGATTGCAAAGATTAACAATCGGTTCAAGAGAGAAGATGCAGTGATCAGTGGATGGGAGAGGGAGCAGGTTCAGAAGGCATCTTCGTGGATGAAGAAGGTCGAGAGGAGGTTGGAAGAGAGGAGGGCAAAAGCGCTTGAAAAGATGGAGAATGAAGTAGCGAAGGCGCGCAGAAAAGCAGAGGAAAGAAGAGCATCGGCTGAGGCCAAGAGGGGAACAAAAGTTGCGAAGGTCACTGAAATATCAAACTTGATGAGAGCAGTTGGAAGGCCACCAGCCAAGCGCTCCTTCTTCTGAATTCCTCTCTCTTTTGATGAGAGCAGTTGGAATTTGTTTCACTTTGTAATTAATTAAGGAGATGGATAATCAAAACCCTCCAAAAACAGTTTTACATTTTTCTTTTACTTGAAAGAACAAAGGAAAGCTATATTATACATCGTCTCTACCAAGATCAAATCTTGGTTTCTAGTTGGTTTAGTTTAAGAACTTGTAAGTAAGAATTGATCTTGGTTTCTAGTTGGTTTAGTTTAAGAACTTGTAAGTAAGAAATGGGCAATTAGTCTGTGTGTTTATACAAGGTTGTCTTTACAAGACTTCTTTTAGTTGTTACGGGTCAATAATTGATCTCGGACGATCATCTTTTTGCGTAGTAATAG

Coding sequence (CDS)

ATGTTCAACGATCAAGCACTACCAGCAGGAACCTCCAGACCTACTCATGCCGGAGACGATGAAGATCAAATCCGCGAAATCCACGCTCTGACTCCCACACCACCACCGCCGGTGACGGAGAATCGGAACCGCCGCGGAGAGGCTTGGGAAACGGCGAGCCAGAGATCGACTTCAATGGCGAGCGAAGGCGCTTCCAGTGAGAATTTTACTTCCATAAGTAGAGAGTTCAATGCTCTGGTGATCGCCGGCGCGGAGATCGGTGACGGTTATCGCCAGGACCGGCCGATTAACGAAGCTCCGAATAACTTGAGCAGGATTGGAGAGGAAGATCAGGCTACGCCTGAGGAGGAGACGAATCCGTTGGCGATCGTACCGGACGGTCATCCGTTTGATGATCAATTAACGCCGTCGTCAATCACAAGACAGGAGAACAATAGCGGCGGAGGAGCAGCAGCGACAAGAGAGATTTCGTTGCAGATGGTGAAGAAGGAGGAGGTGGAGACGAAGATTAGCGCATGGCAGAACGCGAAGATTGCAAAGATTAACAATCGGTTCAAGAGAGAAGATGCAGTGATCAGTGGATGGGAGAGGGAGCAGGTTCAGAAGGCATCTTCGTGGATGAAGAAGGTCGAGAGGAGGTTGGAAGAGAGGAGGGCAAAAGCGCTTGAAAAGATGGAGAATGAAGTAGCGAAGGCGCGCAGAAAAGCAGAGGAAAGAAGAGCATCGGCTGAGGCCAAGAGGGGAACAAAAGTTGCGAAGGTCACTGAAATATCAAACTTGATGAGAGCAGTTGGAAGGCCACCAGCCAAGCGCTCCTTCTTCTGA

Protein sequence

MFNDQALPAGTSRPTHAGDDEDQIREIHALTPTPPPPVTENRNRRGEAWETASQRSTSMASEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLSRIGEEDQATPEEETNPLAIVPDGHPFDDQLTPSSITRQENNSGGGAAATREISLQMVKKEEVETKISAWQNAKIAKINNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEKMENEVAKARRKAEERRASAEAKRGTKVAKVTEISNLMRAVGRPPAKRSFF

Homology

[Close]

BLAST of CmoCh06G000430 vs. ExPASy Swiss-Prot
Match: P93758 (Remorin 4.2 OS=Arabidopsis thaliana OX=3702 GN=REM4.2 PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.3e-58
Identity = 153/290 (52.76%), Postives = 190/290 (65.52%), Query Frame = 0


Query: 1   MFNDQALPAGTSRPTHAGDDEDQIREIHALTPT------------PPPPVTENRNRRGEA 60
           +++ +  P  TS        E  +RE+HALTP             PPPP       RG  
Sbjct: 4   LYHQERSPDATSNDRDE-TPETVVREVHALTPAPEDNSRTMTATLPPPPAF-----RG-- 63

Query: 61  WETASQRSTSMASEGASSENFTSISREFNALVIAGAEIGDGYRQDRPI----NEAPNNLS 120
              +  RS +  SEG   ENFT+ISREFNALVIAG+ + +     R +    +E  + L 
Sbjct: 64  -YFSPPRSATTMSEG---ENFTTISREFNALVIAGSSMENNELMTRDVTQREDERQDELM 123

Query: 121 RIGEEDQATPEEETNPLAIVPDGHPFDDQLTPSSITRQENNSGGGAAATREISLQMVKKE 180
           RI E+     EEETNPLAIVPD +P    L P S    +N  G     +   ++Q VK+E
Sbjct: 124 RIHED--TDHEEETNPLAIVPDQYP-GSGLDPGS----DNGPGQSRVGS---TVQRVKRE 183

Query: 181 EVETKISAWQNAKIAKINNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEK 240
           EVE KI+AWQ AK+AKINNRFKREDAVI+GW  EQV KA+SWMKK+ER+LEER+AKA+EK
Sbjct: 184 EVEAKITAWQTAKLAKINNRFKREDAVINGWFNEQVNKANSWMKKIERKLEERKAKAMEK 243

Query: 241 MENEVAKARRKAEERRASAEAKRGTKVAKVTEISNLMRAVGRPPAKRSFF 275
            +N VAKA+RKAEERRA+AEAKRGT+VAKV E++NLMRA+GRPPAKRSFF
Sbjct: 244 TQNNVAKAQRKAEERRATAEAKRGTEVAKVVEVANLMRALGRPPAKRSFF 271

[Close]

BLAST of CmoCh06G000430 vs. ExPASy Swiss-Prot
Match: Q93YN8 (Remorin 4.1 OS=Arabidopsis thaliana OX=3702 GN=REM4.1 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.8e-57
Identity = 145/286 (50.70%), Postives = 189/286 (66.08%), Query Frame = 0


Query: 11  TSRPTHAGDDEDQ-------IREIHALTPTPPPPVTENRNRRGEAWETASQRSTSMASEG 70
           T+  T A D  D+       +R+IHA+T T    +T  + R       +  RS + +   
Sbjct: 15  TTSTTDASDRRDETPSSEIVVRDIHAMTTT--TELTRPQQRGSGGGYLSPSRSIAFSDGT 74

Query: 71  ASS-ENFTSISREFNALVIAGAEIGD---------GYRQDRPINEAPNNLSRIGEEDQA- 130
            SS ENFT++SREFNALVIAG+ + +         G+R    I +  N L+RIGE D   
Sbjct: 75  TSSGENFTTVSREFNALVIAGSSMDNNSNGTNQSGGHRD--VIRDERNELTRIGENDDVG 134

Query: 131 ----TPEEETNPLAIVPDGHPFDDQLTPSSITRQENNSGGGAAATREISLQMVKKEEVET 190
                PEE++NP AIVPD +   D    + +     +SGG        S+Q VK+EEVE 
Sbjct: 135 DHGQVPEEDSNPWAIVPDDYNNRDGSENNIVLA---SSGGQNRMVTTASVQRVKREEVEA 194

Query: 191 KISAWQNAKIAKINNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEKMENE 250
           KI+AWQ AK+AKINNRFKR+DAVI+GW  EQV +A+SWMKK+ER+LE+RRAKA+EK +N+
Sbjct: 195 KITAWQTAKVAKINNRFKRQDAVINGWLNEQVHRANSWMKKIERKLEDRRAKAMEKTQNK 254

Query: 251 VAKARRKAEERRASAEAKRGTKVAKVTEISNLMRAVGRPPAKRSFF 275
           VAKA+RKAEERRA+AE KRGT+VA+V E++NLMRAVGRPPAKRSFF
Sbjct: 255 VAKAQRKAEERRATAEGKRGTEVARVLEVANLMRAVGRPPAKRSFF 293

[Close]

BLAST of CmoCh06G000430 vs. ExPASy Swiss-Prot
Match: Q7XII4 (Remorin 4.1 OS=Oryza sativa subsp. japonica OX=39947 GN=REM4.1 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.1e-57
Identity = 144/274 (52.55%), Postives = 189/274 (68.98%), Query Frame = 0


Query: 20  DEDQIREIHAL----TPTPPPPVTENRNRRGEAWETAS-QRSTSMASEG---ASSENFTS 79
           +E + R+IHAL    TPTP  P +    RR E+WE+A+  R TS+ S G   A SE F +
Sbjct: 52  EEPEFRDIHALSPPPTPTPSQPSSSYHRRRRESWESAAGSRHTSIRSVGSDTAPSELFPT 111

Query: 80  ISREFNALVIAGAEI----------GDGYRQDRPINEAPNNLSRIGEEDQATPEEETNPL 139
           +SREF+A+V A A            GD  R    +++A   L RIGE++     EETNPL
Sbjct: 112 MSREFSAMVAAAANANAAAAAAANGGDSSRAG--VDDA---LGRIGEDEL----EETNPL 171

Query: 140 AIVPDGHPF-DDQLTPSSITRQENNSGGGAAATREISLQMVKKEEVETKISAWQNAKIAK 199
           AIVPD +P    +    ++    + S  G     E+S+  VKKEEVE+KI+AWQ A++AK
Sbjct: 172 AIVPDSNPIPSPRRAHLALPAPGDVSSAGGGHGDEVSVGQVKKEEVESKIAAWQIAEVAK 231

Query: 200 INNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEKMENEVAKARRKAEERR 259
           +NNRFKRE+ VI+GWE +QV+KA++W+KK ER+LEE+RAKA+EK +NEVAKARRKAEE+R
Sbjct: 232 VNNRFKREEVVINGWEGDQVEKANAWLKKYERKLEEKRAKAMEKAQNEVAKARRKAEEKR 291

Query: 260 ASAEAKRGTKVAKVTEISNLMRAVGRPPAKRSFF 275
           ASAEAKRGTKVA+V E++N MRAVGR P+KRSFF
Sbjct: 292 ASAEAKRGTKVARVLELANFMRAVGRAPSKRSFF 316

[Close]

BLAST of CmoCh06G000430 vs. ExPASy Swiss-Prot
Match: Q9FFA5 (Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-11
Identity = 47/166 (28.31%), Postives = 91/166 (54.82%), Query Frame = 0


Query: 110 DQATPEEETNPLAIVPDGHPFDDQLTPSS-----ITRQENNSGGGAAATREISLQMVKKE 169
           D A  E+   P  ++P   P +++   S      + ++        +  R+  L  V+ E
Sbjct: 32  DVAPQEKPVAPPPVLPSPAPAEEKQEDSKAIVPVVPKEVEEEKKEGSVNRDAVLARVETE 91

Query: 170 EVETKISAWQNAKIAKINNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEK 229
           +  + I AW+ A+  K+ N+ +++ + I  WE  +     + +KK+E +LE+++A+ +E+
Sbjct: 92  KRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQ 151

Query: 230 MENEVAKARRKAEERRASAEAKRGTKVAKVTEISNLMRAVGRPPAK 271
           M+N++A+  ++AEE+RA  EAKRG ++ K  E++   RA G  P K
Sbjct: 152 MKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKK 197

[Close]

BLAST of CmoCh06G000430 vs. ExPASy Swiss-Prot
Match: Q9M2D8 (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-10
Identity = 41/119 (34.45%), Postives = 72/119 (60.50%), Query Frame = 0


Query: 150 AAATREISLQMVKKEEVETKISAWQNAKIAKINNRFKREDAVISGWEREQVQKASSWMKK 209
           A+  R++ L  + KE+  + + AW+ ++ +K  N+ +++ A +  WE  +     + +KK
Sbjct: 87  ASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKK 146

Query: 210 VERRLEERRAKALEKMENEVAKARRKAEERRASAEAKRGTKVAKVTEISNLMRAVGRPP 269
           +E +LE+++A+  E+M+N+VA   ++AEERRA  EAKRG  V K  E +   RA G  P
Sbjct: 147 IEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVP 205

[Close]

BLAST of CmoCh06G000430 vs. ExPASy TrEMBL
Match: A0A6J1FNA4 (remorin 4.1-like OS=Cucurbita moschata OX=3662 GN=LOC111445469 PE=3 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 2.3e-143
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MFNDQALPAGTSRPTHAGDDEDQIREIHALTPTPPPPVTENRNRRGEAWETASQRSTSMA 60
           MFNDQALPAGTSRPTHAGDDEDQIREIHALTPTPPPPVTENRNRRGEAWETASQRSTSMA
Sbjct: 1   MFNDQALPAGTSRPTHAGDDEDQIREIHALTPTPPPPVTENRNRRGEAWETASQRSTSMA 60

Query: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLSRIGEEDQATPEEETNP 120
           SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLSRIGEEDQATPEEETNP
Sbjct: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLSRIGEEDQATPEEETNP 120

Query: 121 LAIVPDGHPFDDQLTPSSITRQENNSGGGAAATREISLQMVKKEEVETKISAWQNAKIAK 180
           LAIVPDGHPFDDQLTPSSITRQENNSGGGAAATREISLQMVKKEEVETKISAWQNAKIAK
Sbjct: 121 LAIVPDGHPFDDQLTPSSITRQENNSGGGAAATREISLQMVKKEEVETKISAWQNAKIAK 180

Query: 181 INNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEKMENEVAKARRKAEERR 240
           INNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEKMENEVAKARRKAEERR
Sbjct: 181 INNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEKMENEVAKARRKAEERR 240

Query: 241 ASAEAKRGTKVAKVTEISNLMRAVGRPPAKRSFF 275
           ASAEAKRGTKVAKVTEISNLMRAVGRPPAKRSFF
Sbjct: 241 ASAEAKRGTKVAKVTEISNLMRAVGRPPAKRSFF 274

[Close]

BLAST of CmoCh06G000430 vs. ExPASy TrEMBL
Match: A0A6J1I709 (remorin 4.1-like OS=Cucurbita maxima OX=3661 GN=LOC111470195 PE=3 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 3.1e-140
Identity = 269/274 (98.18%), Postives = 271/274 (98.91%), Query Frame = 0


Query: 1   MFNDQALPAGTSRPTHAGDDEDQIREIHALTPTPPPPVTENRNRRGEAWETASQRSTSMA 60
           MFNDQALPAGTSRPTH GDDEDQIREIHALTPT PPPVTENRNRRGEAWETASQRSTSMA
Sbjct: 1   MFNDQALPAGTSRPTHGGDDEDQIREIHALTPTRPPPVTENRNRRGEAWETASQRSTSMA 60

Query: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLSRIGEEDQATPEEETNP 120
           SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLSRIGEEDQATPEEETNP
Sbjct: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLSRIGEEDQATPEEETNP 120

Query: 121 LAIVPDGHPFDDQLTPSSITRQENNSGGGAAATREISLQMVKKEEVETKISAWQNAKIAK 180
           LAIVPDGHPFDDQLTPSSITRQEN+SGGGAAATREISLQMVKKEEVETKISAWQNAKIAK
Sbjct: 121 LAIVPDGHPFDDQLTPSSITRQENSSGGGAAATREISLQMVKKEEVETKISAWQNAKIAK 180

Query: 181 INNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEKMENEVAKARRKAEERR 240
           INNRFKREDAVISGWEREQVQKASSWMKKV+RRLEERRAKALEKMENEVAKARRKAEERR
Sbjct: 181 INNRFKREDAVISGWEREQVQKASSWMKKVQRRLEERRAKALEKMENEVAKARRKAEERR 240

Query: 241 ASAEAKRGTKVAKVTEISNLMRAVGRPPAKRSFF 275
           ASAEAKRGTKVAKV EISNLMRAVGRPPAKRSFF
Sbjct: 241 ASAEAKRGTKVAKVIEISNLMRAVGRPPAKRSFF 274

[Close]

BLAST of CmoCh06G000430 vs. ExPASy TrEMBL
Match: A0A6J1J837 (remorin 4.1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482213 PE=3 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.5e-118
Identity = 238/275 (86.55%), Postives = 250/275 (90.91%), Query Frame = 0


Query: 1   MFNDQALPAGTSRPTHAGDDEDQIREIHALTPTPPPPVTENRNRRGEAWETASQRSTSMA 60
           MFNDQA PA TSR +H GDD+DQIR+IHALT   PPPVT NRNRRGEAWET SQRSTSMA
Sbjct: 1   MFNDQA-PAVTSRASHGGDDDDQIRDIHALTSPQPPPVTANRNRRGEAWETTSQRSTSMA 60

Query: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLSRIGEEDQATPEEETNP 120
           SEG SSENFTS+SREFNALVIAGAEIGD YR+DRPINEAPNNLSRI EE+  TPEEE NP
Sbjct: 61  SEGGSSENFTSMSREFNALVIAGAEIGDDYRRDRPINEAPNNLSRIREEEY-TPEEEMNP 120

Query: 121 LAIVPDGHPFDDQLTPSSITRQENNSGG-GAAATREISLQMVKKEEVETKISAWQNAKIA 180
           LAIVPDGHPFDD L P +I+RQEN  GG G AATREISL MVKKEEVETKISAWQNAKIA
Sbjct: 121 LAIVPDGHPFDDHLAPLAISRQENRRGGSGTAATREISLHMVKKEEVETKISAWQNAKIA 180

Query: 181 KINNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEKMENEVAKARRKAEER 240
           KINNRFKREDAVISGWEREQVQKASSWMKK+ER+LEE+RAKALEKMENEVAKA RKAEER
Sbjct: 181 KINNRFKREDAVISGWEREQVQKASSWMKKIERKLEEKRAKALEKMENEVAKAHRKAEER 240

Query: 241 RASAEAKRGTKVAKVTEISNLMRAVGRPPAKRSFF 275
           RASAEAKRGTKVAK+ EISNLMRAVGRPPAKRSFF
Sbjct: 241 RASAEAKRGTKVAKLIEISNLMRAVGRPPAKRSFF 273

[Close]

BLAST of CmoCh06G000430 vs. ExPASy TrEMBL
Match: A0A6J1F6M7 (remorin 4.1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441356 PE=3 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 6.2e-117
Identity = 236/276 (85.51%), Postives = 249/276 (90.22%), Query Frame = 0


Query: 1   MFNDQALPAGTSRPTHAGDDEDQIREIHALTPTPPPPVTENRNRRGEAWETASQRSTSMA 60
           MFNDQA PA TSR +H G+D+DQIR+IHALT   PPPVT NRNRRGEAWET SQRSTSMA
Sbjct: 1   MFNDQA-PAVTSRASHGGNDDDQIRDIHALTSPQPPPVTANRNRRGEAWETTSQRSTSMA 60

Query: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLSRIGEEDQATPEEETNP 120
           SEG SSENFTS+SREFNALVIAGAEIGD YR DRPINEAPNNLSRI EE+  TPEEE NP
Sbjct: 61  SEGGSSENFTSMSREFNALVIAGAEIGDDYRHDRPINEAPNNLSRIREEEY-TPEEEMNP 120

Query: 121 LAIVPDGHPFDDQLTPSSITRQENNSGGGA--AATREISLQMVKKEEVETKISAWQNAKI 180
           LAIVPDGHPFDD L P +I+RQE   GGG+  AATREISL MVKKEEVETKISAWQNAKI
Sbjct: 121 LAIVPDGHPFDDHLAPLAISRQEYRRGGGSGTAATREISLHMVKKEEVETKISAWQNAKI 180

Query: 181 AKINNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEKMENEVAKARRKAEE 240
           AKINNRFKREDAVISGWEREQVQKASSWMKK+ER+LEE+RAKALEKMENEVAKA RKAEE
Sbjct: 181 AKINNRFKREDAVISGWEREQVQKASSWMKKIERKLEEKRAKALEKMENEVAKAHRKAEE 240

Query: 241 RRASAEAKRGTKVAKVTEISNLMRAVGRPPAKRSFF 275
           RRASAEAKRGTKVAK+ EISNLMRAVGRPPAKRSFF
Sbjct: 241 RRASAEAKRGTKVAKLIEISNLMRAVGRPPAKRSFF 274

[Close]

BLAST of CmoCh06G000430 vs. ExPASy TrEMBL
Match: A0A6J1J8D1 (remorin 4.1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482213 PE=3 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.8e-115
Identity = 238/295 (80.68%), Postives = 250/295 (84.75%), Query Frame = 0


Query: 1   MFNDQALPAGTSRPTHAGDDEDQIREIHALTPTPPPPVTENRNRRGEAWETASQRSTSMA 60
           MFNDQA PA TSR +H GDD+DQIR+IHALT   PPPVT NRNRRGEAWET SQRSTSMA
Sbjct: 1   MFNDQA-PAVTSRASHGGDDDDQIRDIHALTSPQPPPVTANRNRRGEAWETTSQRSTSMA 60

Query: 61  SEGASSENFTSISREFNALVIAGAEIGDGYRQDRPINEAPNNLSRIGEEDQATPEEETNP 120
           SEG SSENFTS+SREFNALVIAGAEIGD YR+DRPINEAPNNLSRI EE+  TPEEE NP
Sbjct: 61  SEGGSSENFTSMSREFNALVIAGAEIGDDYRRDRPINEAPNNLSRIREEEY-TPEEEMNP 120

Query: 121 LAIVPDGHPFDDQLTPSSITRQENNSGG-GAAATREISLQMVKKEEVETKISAWQNAKIA 180
           LAIVPDGHPFDD L P +I+RQEN  GG G AATREISL MVKKEEVETKISAWQNAKIA
Sbjct: 121 LAIVPDGHPFDDHLAPLAISRQENRRGGSGTAATREISLHMVKKEEVETKISAWQNAKIA 180

Query: 181 KINNRFKREDAVISGWEREQVQKASSWMKKVE--------------------RRLEERRA 240
           KINNRFKREDAVISGWEREQVQKASSWMKK+E                    R+LEE+RA
Sbjct: 181 KINNRFKREDAVISGWEREQVQKASSWMKKIEIHFETSHMNKLNLCRDHSIVRKLEEKRA 240

Query: 241 KALEKMENEVAKARRKAEERRASAEAKRGTKVAKVTEISNLMRAVGRPPAKRSFF 275
           KALEKMENEVAKA RKAEERRASAEAKRGTKVAK+ EISNLMRAVGRPPAKRSFF
Sbjct: 241 KALEKMENEVAKAHRKAEERRASAEAKRGTKVAKLIEISNLMRAVGRPPAKRSFF 293

[Close]

BLAST of CmoCh06G000430 vs. TAIR 10
Match: AT2G41870.1 (Remorin family protein )

HSP 1 Score: 228.0 bits (580), Expect = 9.0e-60
Identity = 153/290 (52.76%), Postives = 190/290 (65.52%), Query Frame = 0


Query: 1   MFNDQALPAGTSRPTHAGDDEDQIREIHALTPT------------PPPPVTENRNRRGEA 60
           +++ +  P  TS        E  +RE+HALTP             PPPP       RG  
Sbjct: 4   LYHQERSPDATSNDRDE-TPETVVREVHALTPAPEDNSRTMTATLPPPPAF-----RG-- 63

Query: 61  WETASQRSTSMASEGASSENFTSISREFNALVIAGAEIGDGYRQDRPI----NEAPNNLS 120
              +  RS +  SEG   ENFT+ISREFNALVIAG+ + +     R +    +E  + L 
Sbjct: 64  -YFSPPRSATTMSEG---ENFTTISREFNALVIAGSSMENNELMTRDVTQREDERQDELM 123

Query: 121 RIGEEDQATPEEETNPLAIVPDGHPFDDQLTPSSITRQENNSGGGAAATREISLQMVKKE 180
           RI E+     EEETNPLAIVPD +P    L P S    +N  G     +   ++Q VK+E
Sbjct: 124 RIHED--TDHEEETNPLAIVPDQYP-GSGLDPGS----DNGPGQSRVGS---TVQRVKRE 183

Query: 181 EVETKISAWQNAKIAKINNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEK 240
           EVE KI+AWQ AK+AKINNRFKREDAVI+GW  EQV KA+SWMKK+ER+LEER+AKA+EK
Sbjct: 184 EVEAKITAWQTAKLAKINNRFKREDAVINGWFNEQVNKANSWMKKIERKLEERKAKAMEK 243

Query: 241 MENEVAKARRKAEERRASAEAKRGTKVAKVTEISNLMRAVGRPPAKRSFF 275
            +N VAKA+RKAEERRA+AEAKRGT+VAKV E++NLMRA+GRPPAKRSFF
Sbjct: 244 TQNNVAKAQRKAEERRATAEAKRGTEVAKVVEVANLMRALGRPPAKRSFF 271

[Close]

BLAST of CmoCh06G000430 vs. TAIR 10
Match: AT3G57540.1 (Remorin family protein )

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-58
Identity = 145/286 (50.70%), Postives = 189/286 (66.08%), Query Frame = 0


Query: 11  TSRPTHAGDDEDQ-------IREIHALTPTPPPPVTENRNRRGEAWETASQRSTSMASEG 70
           T+  T A D  D+       +R+IHA+T T    +T  + R       +  RS + +   
Sbjct: 15  TTSTTDASDRRDETPSSEIVVRDIHAMTTT--TELTRPQQRGSGGGYLSPSRSIAFSDGT 74

Query: 71  ASS-ENFTSISREFNALVIAGAEIGD---------GYRQDRPINEAPNNLSRIGEEDQA- 130
            SS ENFT++SREFNALVIAG+ + +         G+R    I +  N L+RIGE D   
Sbjct: 75  TSSGENFTTVSREFNALVIAGSSMDNNSNGTNQSGGHRD--VIRDERNELTRIGENDDVG 134

Query: 131 ----TPEEETNPLAIVPDGHPFDDQLTPSSITRQENNSGGGAAATREISLQMVKKEEVET 190
                PEE++NP AIVPD +   D    + +     +SGG        S+Q VK+EEVE 
Sbjct: 135 DHGQVPEEDSNPWAIVPDDYNNRDGSENNIVLA---SSGGQNRMVTTASVQRVKREEVEA 194

Query: 191 KISAWQNAKIAKINNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEKMENE 250
           KI+AWQ AK+AKINNRFKR+DAVI+GW  EQV +A+SWMKK+ER+LE+RRAKA+EK +N+
Sbjct: 195 KITAWQTAKVAKINNRFKRQDAVINGWLNEQVHRANSWMKKIERKLEDRRAKAMEKTQNK 254

Query: 251 VAKARRKAEERRASAEAKRGTKVAKVTEISNLMRAVGRPPAKRSFF 275
           VAKA+RKAEERRA+AE KRGT+VA+V E++NLMRAVGRPPAKRSFF
Sbjct: 255 VAKAQRKAEERRATAEGKRGTEVARVLEVANLMRAVGRPPAKRSFF 293

[Close]

BLAST of CmoCh06G000430 vs. TAIR 10
Match: AT5G23750.1 (Remorin family protein )

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-12
Identity = 47/166 (28.31%), Postives = 91/166 (54.82%), Query Frame = 0


Query: 110 DQATPEEETNPLAIVPDGHPFDDQLTPSS-----ITRQENNSGGGAAATREISLQMVKKE 169
           D A  E+   P  ++P   P +++   S      + ++        +  R+  L  V+ E
Sbjct: 32  DVAPQEKPVAPPPVLPSPAPAEEKQEDSKAIVPVVPKEVEEEKKEGSVNRDAVLARVETE 91

Query: 170 EVETKISAWQNAKIAKINNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEK 229
           +  + I AW+ A+  K+ N+ +++ + I  WE  +     + +KK+E +LE+++A+ +E+
Sbjct: 92  KRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQ 151

Query: 230 MENEVAKARRKAEERRASAEAKRGTKVAKVTEISNLMRAVGRPPAK 271
           M+N++A+  ++AEE+RA  EAKRG ++ K  E++   RA G  P K
Sbjct: 152 MKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKK 197

[Close]

BLAST of CmoCh06G000430 vs. TAIR 10
Match: AT5G23750.2 (Remorin family protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-12
Identity = 49/166 (29.52%), Postives = 92/166 (55.42%), Query Frame = 0


Query: 110 DQATPEEETNPLAIVPDGHPFDDQLTPSS-----ITRQENNSGGGAAATREISLQMVKKE 169
           D A  E+   P  ++P   P +++   S      + + E     G +  R+  L  V+ E
Sbjct: 32  DVAPQEKPVAPPPVLPSPAPAEEKQEDSKAIVPVVPKVEEEKKEG-SVNRDAVLARVETE 91

Query: 170 EVETKISAWQNAKIAKINNRFKREDAVISGWEREQVQKASSWMKKVERRLEERRAKALEK 229
           +  + I AW+ A+  K+ N+ +++ + I  WE  +     + +KK+E +LE+++A+ +E+
Sbjct: 92  KRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQ 151

Query: 230 MENEVAKARRKAEERRASAEAKRGTKVAKVTEISNLMRAVGRPPAK 271
           M+N++A+  ++AEE+RA  EAKRG ++ K  E++   RA G  P K
Sbjct: 152 MKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKK 196

[Close]

BLAST of CmoCh06G000430 vs. TAIR 10
Match: AT1G67590.1 (Remorin family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-12
Identity = 60/191 (31.41%), Postives = 92/191 (48.17%), Query Frame = 0


Query: 96  INEAPNNLSRIGEED---QATPEEETNPLAIVPDGHPFDDQL----------TPSSITRQ 155
           + +    ++ IG ++    ATP   T P+   P   P               T + + R 
Sbjct: 149 VRDMGTEMTPIGSQEPSRTATPVRATTPVGRSPVTSPVRASQRGEAVGVVMETVTEVRRV 208

Query: 156 ENNSGGGAAATREISLQMVKKEEVETKISAWQNAKIAKINNRFKREDAVISGWEREQVQK 215
           E+N+        E    M     +E +  AW  A+ AK   R+KRE+  I  WE  + +K
Sbjct: 209 ESNNSEKVNGFVESKKAM---SAMEARAMAWDEAERAKFMARYKREEVKIQAWENHEKRK 268

Query: 216 ASSWMKKVERRLEERRAKALEKMENEVAKARRKAEERRASAEAKRGTKVAKVTEISNLMR 274
           A   MKK+E + E  +A+A EK+ N++A  +R AEERRA+AEAK   K  K +E ++ +R
Sbjct: 269 AEMEMKKMEVKAERMKARAEEKLANKLAATKRIAEERRANAEAKLNEKAVKTSEKADYIR 328

The following BLAST results are available for this feature:

BLAST of CmoCh06G000430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93758	1.3e-58	52.76	Remorin 4.2 OS=Arabidopsis thaliana OX=3702 GN=REM4.2 PE=1 SV=1	[more]
Q93YN8	1.8e-57	50.70	Remorin 4.1 OS=Arabidopsis thaliana OX=3702 GN=REM4.1 PE=1 SV=1	[more]
Q7XII4	3.1e-57	52.55	Remorin 4.1 OS=Oryza sativa subsp. japonica OX=39947 GN=REM4.1 PE=1 SV=1	[more]
Q9FFA5	1.5e-11	28.31	Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1	[more]
Q9M2D8	3.8e-10	34.45	Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 P...	[more]

BLAST of CmoCh06G000430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FNA4	2.3e-143	100.00	remorin 4.1-like OS=Cucurbita moschata OX=3662 GN=LOC111445469 PE=3 SV=1	[more]
A0A6J1I709	3.1e-140	98.18	remorin 4.1-like OS=Cucurbita maxima OX=3661 GN=LOC111470195 PE=3 SV=1	[more]
A0A6J1J837	1.5e-118	86.55	remorin 4.1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482213 PE=3 SV=...	[more]
A0A6J1F6M7	6.2e-117	85.51	remorin 4.1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441356 PE=3 S...	[more]
A0A6J1J8D1	5.8e-115	80.68	remorin 4.1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482213 PE=3 SV=...	[more]

BLAST of CmoCh06G000430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G41870.1	9.0e-60	52.76	Remorin family protein	[more]
AT3G57540.1	1.3e-58	50.70	Remorin family protein	[more]
AT5G23750.1	1.1e-12	28.31	Remorin family protein	[more]
AT5G23750.2	1.4e-12	29.52	Remorin family protein	[more]
AT1G67590.1	1.8e-12	31.41	Remorin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 207..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..249
None	No IPR available	PANTHER	PTHR31471:SF69	SUBFAMILY NOT NAMED	coord: 15..273
None	No IPR available	PANTHER	PTHR31471	OS02G0116800 PROTEIN	coord: 15..273
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 165..269 e-value: 5.1E-28 score: 97.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000430.1	CmoCh06G000430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010033	response to organic substance
biological_process	GO:1901700	response to oxygen-containing compound
biological_process	GO:0006950	response to stress