CmoCh06G000410 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein s2
Location	Cmo_Chr06: 260223 .. 267508 (-)
RNA-Seq Expression	CmoCh06G000410
Synteny	CmoCh06G000410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCGCGGTGGATTTGGACGAGGGTTCGGCGGCAGAGGCCGCGGCGGTCGCCGTCGTGCTGTTCGACGCGACGAAGAGGAGAAGTGGGTTCCGGTCACCAAGCTTGGTCGCCTCGTAAAAGAGGGAAAAATCCAGTCCTTGGATCAGATATACCACCACTCTGTTAAGAATGAGAAATAGAAATAGAATTGGGATCGAAAGTATGATCTTCATTCAGGTTTACCACGTTTAAATAGGATACAAACTATCAACTAATACCTAAAAATAGAAAAATATATATCTAATTAAATCTGGTAAATAAATAAAATATACGGTTAATCAAATCTATACTAACAACTTCCTAAATATCTAAGATATATTCTAACTAATTATCACGGCAAAATATCCTCTTAATACTCCCCCTCAAGTTGGAGAGTGTATGTCGATCACACCCAACTTGTCCTTCAAAAAGTCAAATTGCTGTCTTCCCAAAGCTTTAGTAAAAACATCTGCCAATTGCATTTTGGTCGAACCATAACACGGTTTGATGATTCCAGCTTGTAATTTTTCTCGAACTATATGACAATCTATTTCAATGTGTTTCGTACGTTCATGAAAAACTGGATTGGCTGCTATATGTAATGCTGCTTGATTATTACAATATAATAATGCTGGTTCGGACAGTGGAACATTCAAGTCTTGAAGAATGTATCTTAACCAAGTTAACTCTAAACAAGTATTTGCCATAGCTCGATACTCGGCTTCTGCTGATGATCTGGACACATTAGTCTGCTTTTTAGACTTCCAAGAAATAATTGAATTTCCGAGGAAAATGCAGAACCCAGAAATAGATCGTCTGGAAGTTCGACAACCACCCCAGTCAGAATCGCAATATGCCTGTAATCTTAAATTGTTTTCAGATGGCAGTAGAAGTCCTTGACCAGGAGTGCCTTTAATGTACCTCAGAACTCGAAGAGCTGCCTCCCAATGTGGTTTTCTTGGTTCATGCATAAATTGGCTAAGCATACGAACTGAATAAGCTATGTCAGGCCTAGTGACGGTCAAATATATTAATCTGCCAATCAACCGTCTGTATTTATTTGGATCATTCAACTTCTCTCCTTCGGTTAAAGAAAGTTTCAGATTTTGCTCCATAGGAAATTTGTCTGGACGTGCTCCTGTAAGACCTGTGTCTTGAAGGATGTCTAGAGCATACTTCCTTTGAGACATAAAAATTCCTTTTCTAGATCGAGAAAATTCAATGCCTAGAAAATATTTCAAATTTCCTAAATCTTTGATAAGAAATTTCTGGAGTAAACTAGTATTGAGATATTGAATTTCTTCGAGATCATTGCCTGTCAACAGAATATCATCAACATAGATTAGAACTGCAGTGAAAGAAGTACCTTTACTCTTAGTAAACAAAGAGTAATCTGCTTTGGACTGAGTGCAGCCTGCATTTTGTATAGTTGTAGAAAATATGGAGAACCAATTGCGAGAAGCCTGTTTTAATCCATAAAGAGATTTATGGAGCCGACATACTGTATTCTCCCCCTGTCGGCGAAGACCTGGTGGTAAAGACATATAAACTTCCTCGTCTAGATTACCATGGAGAAAGGCATTTTGAACATCCAACTGATGGGTGAACCATTTTCGAGCAGCAGCAACAGTGAGTAAGCAACGAAGTGTAGTAAGTTTCGCTGTAGGGGAAAATGTTTCTGTGTAATCAATACCTTCAACCTGAGTGTACCCCTTTGCTACTAGTCGAGCTTTATAACGTTCAACAGAACCATCAGAGTTGTATTTAATTTTGTACACCCAACGACAACCAATAGCTTTATGACCAAGTGGTAGAGGAACGAGAGACCATGTATGATTACGTTCCAAAGCTGCAATTTCATCATTCATAGCCTGCTGCCATAACGGGTCGCCAACTGCCTCGTCATAGGTTTTAGGTTCTGTCTGGGATGTAATAAGAGCTAGAAAAGCACGTTGAGTAGGAGAAAAACGAGAGAATGAAAGGTAATGATGAAGGGGATACCTGGTGCCAGTGCCGGGACTTGAGCTAGAGGTGAAATGATTGGCTCCAGAAGACATCTCATAATCCTTATGCCAAGCTGGAGGCTGTTTAGTACGAGTAGAACGTCGAAGTGGAGCTGATGTATCAGGTGGGATAGGATTGGAATTAGTGGGCGAATCTGGAGAAGGTGGAGGAGACGACGGAGTAGTAGGTGAAGGGATAGGAGGTGAAGGAGGAGTAGGAGGTGAAGGAATAGGAGGTGAAGGTGGAGGATGGATGTTTGAGTAGGATGGATCATGAAGTGGTACAACAGGAGTCGAAAGAGCTAATGTCGAAGTTTGTGAAGCTGATGAAAAAGGAAAATCATCTTCACAAAATTTGACATCACGGCTGATAAAGAATGTGTGAGATTGCATGTCATACAACTTGTAACCTTTATGACCACAAGGATATCCTACGAAAACACAAGGAGTTGCCCTAGGTTCAAATTTTTGCTTAGGATGTACTATAGTTGCATAACATTTACAACCAAAATCTTTAAGATGATGAAATGTAGGTGGTCGTTTGTAGAGTGCTTCAAAGGGTGTCTTGTTAGATAATAATGGTGATGGCGTTAAAATGCACTCTCCCCAAAAATTAAGTGGAACCTGTGACTGAAAAAGAAGAGACCTAGCTACATTTAGGATATGGTGATGCTTGCGTTCTACGACTCCATTTTGTTGTGGAGTATAGACACAAGTGCGCTGAAATTCAATACCACAAGAAGTAAAGAATGGTTGCAAAGATAGGAACTCAGTCCCATTGCAAAGATAGGAACTCAGTCCCATTGTCTGATCGAACTATCTTGATAGTAGTATGAAATTGAGTTTGAACGAATTTAACAAAGTTCATCAACAAATGATGTACTTCTGACTTATGTTGCATTAAAAAAACCCAAGTACATCGAGTAAAATCATCAACAATAGTGAGAAAAAAACGCAAACCAGAATGGGTAGGAATTTTATGTGGTCCCCAAACATCACAATGTATCAGATCAAAAGCAGAATGGGTTGTTATTGAACTTCTTGGGAAAGACAACCTAGTTTGTTTTGCTAACGGGCAGATACTGCAATTATGAGAATAACTCGCATTATTAAGATGCAATTGATCAGCTAGAAATTTAAAACGAGAAAAGGAAGGATGACCTAGGCGTAAATGCCACAAATCAGATGACTGAGATACTTGATGAGCTGAAGACTTGATTGGAGATGAAGAAATATGATAGAGACCTCCAAATTGTTTACCCGAGCCAATCATCTTCCCCGTAGCCAAGTCCTGCATAACACAAGAATCAGGATAGAAGGTGACATAACATTTCAAGTTATTGGTAAGTTTGCTGATCGACATTAGGTTTAAATTGAATGAAGGCACACATAAAACGTTGTTTAATTTAAGGTTAGGGCTAAGGGAAATATTGCCAGTATGTGACACACGTGCTGTTTCTCCATTAGGCAAATTTATTGTAGACATGATGGCAGCCTTTGGTTCAGTCATAACAGAAGATTTTGATACTATATGATCCGTAGCTCCACTATCGAGAATCCATGAATTAGAACTCGCAGAGTTAATAGATAATGTAGATATGGGAAACAAACCTGCAACATTGATGTGATTGTCAGAATTACCAGAAGGGTGATGATTGATTGCAGATAAGGCTTGTGCTATCTGTCGTAATTGCTCAGAAGAAAAATTTGGAATGGAATTAGGTGACTGTTCTTCTGTATTCAACTGTGAAACATCGGCCATATTTGCAGATGATCGATATCCACGGTTATTGTGTTGATTGTCTTGTCTTGTCCTTCCAGAATTATTTTTCTGTCGACACCGATCTTCTGTATGGCCCCTTCTATCACAAAACTTACAGTGAAACTTAAGAATTCGACACTCGTTAATTGTATGACCACTTTTATTGCAGTGTTCACACAATTTGTCCTTGGCGAATTTTGAATATATTGTTTTCTTTTGCACTGCTGATGCAATCGAGATTTTCTCAGTAGGTTCGGAAGTTACCTGACGCTGCATCTCTTCTTGTACAAGTAATGAATAGGCTTGCCTCACATTAGGTAATGGAGACATCATCAATATGTTAGATCTCACCGTTTTATAAGACTGATTGAGCCCCATGAGCAATTGCATCAACTTGTCTTCTTCGCGTTGATCAATATGTATTTGACGTTGATTACAGGTAAATGGTGTGCGATACGCTTCCAGTTCATCCCAGAGTGCTTTGAGCTTGGTGAAATATGTTGACAGTGCCATGGTTCCTTGTGACATCGTTGCTATCGAGTTTTGTATTTAAAAAATTGCTGGAGCATTCTTTTGTAAGAATTGATCGTGAAGATCAACCCACACTTGATGAGCTGTCTTGGCGTGAATAATGCCTTTAGCGATATCTGCTTTAACGGAATGGGTTAACCAAGATATTATCATACTGTTGCACTGATTCCAGAGTTCGAATTCGGTTGAATTTGCATCTTGGGACGGTTCCTCAATTGTGCCATCAATGAAGCCAATTTTCTTCTTGGCAATAAGAGCATGCATAACTGATTTCCTCCAGGATTGATAATTTACTCCATTTAATTTGATTGGAACAAGTGAATATCCTGGCTGATCAGAGTGATGAATATAGTACGGATGTGTTAAATCAACATCCGAAATTTTGAAGCTAGATTTGGCTGATTCCGCCATAAAGGAAATTTTGATATTTAAGAACACCAAGATCGGTGCTCTGATACCATGTTAAGAATGAGAAATAGAAATAGAATTGGGATCGAAAGTATGATCTTCATTTTACCACGCTTAAATAGGATACAAACTATCAACTAATACCTAAAAATAGAAAAATATATATCTAATTAAATCTGGTAAATAAATAAAATATACGGTTAATCAAATCTATACTAACAACTTCCTAAGATATATTCTAACTAATTATCACGGAAAAATATCCTCTTAATACACTCTCTCCCTATCAAGTAGCACCAGATCGTTGATACACTCATTGGCCCTAGCATCAAGGACGAGGTAATGAAGATCACGCCTGTCCAGAAGCAGACCCGTGCTGGACAGAGAACCCGTTTCAAGGCGTTTGTCATCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTCAAGTGTAGTAAAGAGGTTGCCACAGCGATTCGTGGCTCGATTATTTTGGCTAAGCTGTCTTTTGATCCCTGTGAGAAGAGGGTATTGGGGTAGCAAGATTGGTAAGCCTCATACAGTACCTTGTAAGGTTACTGGAAAATGTGGATCCGTCACCGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAATTTGCTGGGATTGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCGGCAACTTTGTTAAGGTTTGTTCCAAACTTGAATGGTTAATTTATTCTATTTAGTTCAGATTTTGGCTGTTTTCTACTAGCTTTTTGTTGATTTGAACTTTTGGGGTACTTTATCATTATGGATACCACCACTTAGTTATTCAATTACTATATATTTTGTAGTCCATTCATTTGGAAAGCTTCATCAGGATGGAATTCACCCTCAGGAAGTGTAGTTTTAAGTGTTCTTGATTTGTTTTCAGTGCAGATAATAACATTTAACCATATAATTTGTGGTGTCATGTCATGAGTCCATATGTTATCATCACTGATTTCAGAACTAATCATTTGATGAATGAATTTCATTTGGATAGGATGTTTAGTTTCGATGGTTCAGGAGGAGTCGTGATTCAAAACTTTTCTACCCAAGTTCACTAGCATATATTGTCCTCTTTAGGCTTTTCATTTAAGAGCTTCCTCTCAAGGTTTCAAAACTCTATTCGTTAGGGAGAGGTTTCCACATCCTTCTAAGGAATGTTTTGTTCCCTCCTGCAATTGATGTGAGATCTCACAATCCACTCCCTTAGGGACCAGCATCCTCGCTGGCACACCGCTCGATGTCTAGCTCTAGTGCCATTTGTGACAGCTCAAGCCCACGAGTAGCAGATATTGTCCTTTGTGTGTTTTCCTTTTCAAGGTTTTAAATCGTGTCTGCTAAGGAAAGGTTTTCACACTCTTATAAGGAATGATTCGACTGATTTTGTGTCTGCCGTTGCACAAACTGGTCGATAACTTCCCAATTTTCTGTTATAACCGGACGCTGTATCATTGTTGATTGTTCATAACAGTGAAATTGTAAACCAAATAAGAGACGGCTGTGGGGTTGTGTGTTGTAATTCAAATTGATTTGGATCTCTTTACTTGTGGGGGTCTTATTTCAGGCAACCTTCGACTGCCTGCTGAAAACTTGGGGCTTCCAAACACCTGAGTTTTGGAGGGAGACGTTGGTGACAACAGAAAACTGAAGTGAGATTGAGAGGAGGAGTGATTTGAATGACGGGGAGGGAGGTCCTTTTATAGGGGGATTCCTGGAGTTGGTTGAGATTTGTGTGGACGAAATTGAATCCACCTCCTCCTTCTCTTCGGCAGTAACTCATTCAACTCATTCAAACTCATTCAAACTCTATTATTAGCTTCAACAGGAGACACGGTTCACAAACTCCCCATTCCGAGAACACACAGATCTGTTGGCGAAACCCACCGTGAAGGCGTTGTTGTTAGAAGACCTCGAGAGGGGTGCTGCTTGAATTTGGTAAATTATCATCCCTTTTTCTTTCAACTATGGGAATATGGTAACCTTTCTTATACAAGAAATCTACCTCTGTTTACATTGAATTTGAATTTTGGGTGTAATTTATTTACCACCCTTTCATGGGTGTTAATCCATTTTATTTTATTATTACTTTTACTTACAAAAATTTCAATAAGAACAAGAAATAAAAACCAAATAACTTTGTGTTTAAAAAGAAGAAAGACATTAGTAAAGATTATCTTAAAAGAAGAGAAGTTTGTTATACTTAAGATAGAAGTAAAGTTGTGGATTAAGTTTGAGTTTTGAGTTTCACATGACAATGAGTGTGCAACTACTTCACCCTTTTTCCCTTTGGCCCTCCAAATCTGTATCTTCCGACACACACAAACTCTATACCTTTCTACTCCCAAAGGATGTCTGCAATCAATGCATGCTATTCTTCCATTATTGGCCCAAAAGGCCTAGAATTCGAGCTATTCATCTTCATCTTTGTAGTTGAGTTTAGTTTCAATTTAGTACCTTTCTTTTTTTTTAAGATATGA

mRNA sequence

ATGGCAGAGCGCGGTGGATTTGGACGAGGGTTCGGCGGCAGAGGCCGCGGCGGTCGCCGTCGTGCTGTTCGACGCGACGAAGAGGAGAAATCACGCCTGTCCAGAAGCAGACCCGTGCTGGACAGAGAACCCGTTTCAAGGCGTTTGTCATCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTCAAGTGTAGTAAAGAGGTTGCCACAGCGATTCGTGGCTCGATTATTTTGGCTAAGCTGTCTTTTGATCCCTGTGAGAAGAGGGTATTGGGGTAGCAAGATTGGTAAGCCTCATACAGTACCTTGTAAGGTTACTGGAAAATGTGGATCCGTCACCGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAATTTGCTGGGATTGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCGGCAACTTTGTTAAGATATGA

Coding sequence (CDS)

ATGGCAGAGCGCGGTGGATTTGGACGAGGGTTCGGCGGCAGAGGCCGCGGCGGTCGCCGTCGTGCTGTTCGACGCGACGAAGAGGAGAAATCACGCCTGTCCAGAAGCAGACCCGTGCTGGACAGAGAACCCGTTTCAAGGCGTTTGTCATCGTCGGCGATGGTAATGGCCATGTGGGTTTGGGAGTCAAGTGTAGTAAAGAGGTTGCCACAGCGATTCGTGGCTCGATTATTTTGGCTAAGCTGTCTTTTGATCCCTGTGAGAAGAGGGTATTGGGGTAGCAAGATTGGTAAGCCTCATACAGTACCTTGTAAGGTTACTGGAAAATGTGGATCCGTCACCGTCCGGATGGTTCCGGCGCCACGAGGTGCTGGGATTGTGGCGGCTAGAGTGCCCAAGAAGGTCTTGCAATTTGCTGGGATTGAGGACGTGTTTACATCTTCTAGGGGATCGACTAAAACTCTCGGCAACTTTGTTAAGATATGA

Protein sequence

MAERGGFGRGFGGRGRGGRRRAVRRDEEEKSRLSRSRPVLDREPVSRRLSSSAMVMAMWVWESSVVKRLPQRFVARLFWLSCLLIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKI

Homology

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BLAST of CmoCh06G000410 vs. ExPASy Swiss-Prot
Match: Q8L8Y0 (40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-36
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 84  LIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIED 143
           ++PVRRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+D
Sbjct: 155 VVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDD 214

Query: 144 VFTSSRGSTKTLGNFVK 161
           VFTSSRGSTKTLGNFVK
Sbjct: 215 VFTSSRGSTKTLGNFVK 231

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BLAST of CmoCh06G000410 vs. ExPASy Swiss-Prot
Match: Q93VB8 (40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-36
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 84  LIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIED 143
           ++PVRRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+D
Sbjct: 155 VVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDD 214

Query: 144 VFTSSRGSTKTLGNFVK 161
           VFTSSRGSTKTLGNFVK
Sbjct: 215 VFTSSRGSTKTLGNFVK 231

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BLAST of CmoCh06G000410 vs. ExPASy Swiss-Prot
Match: Q9SCM3 (40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.8e-36
Identity = 103/213 (48.36%), Postives = 119/213 (55.87%), Query Frame = 0


Query: 3   ERGGFGRGFGGRG------RGGRRRAVRRDEEEK----SRLSR----------------S 62
           +RG FGRGFGGRG      RG  RRA R  EEEK    ++L R                S
Sbjct: 11  DRGDFGRGFGGRGGGRGGPRGRGRRAGRAPEEEKWVPVTKLGRLVKEGKITKIEQIYLHS 70

Query: 63  RPVLDREPVSRRLSSSAMVMAMWVWESSVVKRLPQRFVARLFWL---------------- 122
            PV + + +   +  S     M +       R  QR   + F +                
Sbjct: 71  LPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSK 130

Query: 123 -------------SCLLIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIV 161
                           ++P+RRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIV
Sbjct: 131 EVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIV 190

[Close]

BLAST of CmoCh06G000410 vs. ExPASy Swiss-Prot
Match: P49688 (40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2)

HSP 1 Score: 151.4 bits (381), Expect = 8.9e-36
Identity = 105/218 (48.17%), Postives = 120/218 (55.05%), Query Frame = 0


Query: 3   ERGGFGRGF---------GGRGRGGR--RRAVRRDEEEK----SRLSR------------ 62
           ERG FGRGF         GGRGRGGR  RR  R  EEEK    ++L R            
Sbjct: 15  ERGDFGRGFGGRGGRGDRGGRGRGGRGGRRGGRASEEEKWVPVTKLGRLVAAGHIKQIEQ 74

Query: 63  ----SRPVLDREPVSRRLSSSAMVMAMWVWESSVVKRLPQRFVARLFWL----------- 122
               S PV + + +   +  +     M +       R  QR   + F +           
Sbjct: 75  IYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 134

Query: 123 ------------------SCLLIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPR 161
                                ++PVRRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPR
Sbjct: 135 VKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPR 194

[Close]

BLAST of CmoCh06G000410 vs. ExPASy Swiss-Prot
Match: P27685 (40S ribosomal protein S2 OS=Dictyostelium discoideum OX=44689 GN=rps2 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.6e-31
Identity = 60/76 (78.95%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 84  LIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIED 143
           +IPVRRGYWG+K+G PHTVP KVTGKCGSV VR+VPAPRG GIVAARVPKK+LQ+AG++D
Sbjct: 149 VIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDD 208

Query: 144 VFTSSRGSTKTLGNFV 160
           V+TSSRG T+T+GNFV
Sbjct: 209 VYTSSRGKTRTMGNFV 224

[Close]

BLAST of CmoCh06G000410 vs. ExPASy TrEMBL
Match: A0A5D3DPL0 (40S ribosomal protein S2-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006280 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.6e-40
Identity = 115/216 (53.24%), Postives = 126/216 (58.33%), Query Frame = 0


Query: 1   MAERGGFGRGFGG-------RGRGGRRRAVRRDEEEK----SRLSR-------------- 60
           MAERGGFGRGFGG       RGRGGRRRA RRDEEEK    ++L R              
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGRIQSLEQIY 60

Query: 61  --SRPVLDREPVSRRLSSSAMVMAMWVWESSVVKRLPQRFVARLFWL------------- 120
             S P+ + + V   +  S     M +       R  QR   + F +             
Sbjct: 61  LHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 ----------------SCLLIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 161
                              +IPVRRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180

[Close]

BLAST of CmoCh06G000410 vs. ExPASy TrEMBL
Match: E5GBY7 (40S ribosomal protein s2 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.6e-40
Identity = 115/216 (53.24%), Postives = 126/216 (58.33%), Query Frame = 0


Query: 1   MAERGGFGRGFGG-------RGRGGRRRAVRRDEEEK----SRLSR-------------- 60
           MAERGGFGRGFGG       RGRGGRRRA RRDEEEK    ++L R              
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGRIQSLEQIY 60

Query: 61  --SRPVLDREPVSRRLSSSAMVMAMWVWESSVVKRLPQRFVARLFWL------------- 120
             S P+ + + V   +  S     M +       R  QR   + F +             
Sbjct: 61  LHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 ----------------SCLLIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 161
                              +IPVRRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180

[Close]

BLAST of CmoCh06G000410 vs. ExPASy TrEMBL
Match: A0A0A0LFC7 (S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816100 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.6e-40
Identity = 115/216 (53.24%), Postives = 126/216 (58.33%), Query Frame = 0


Query: 1   MAERGGFGRGFGG-------RGRGGRRRAVRRDEEEK----SRLSR-------------- 60
           MAERGGFGRGFGG       RGRGGRRRA RRDEEEK    ++L R              
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIY 60

Query: 61  --SRPVLDREPVSRRLSSSAMVMAMWVWESSVVKRLPQRFVARLFWL------------- 120
             S P+ + + V   +  S     M +       R  QR   + F +             
Sbjct: 61  LHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 ----------------SCLLIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 161
                              +IPVRRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180

[Close]

BLAST of CmoCh06G000410 vs. ExPASy TrEMBL
Match: A0A1S3B7F9 (40S ribosomal protein S2-3-like OS=Cucumis melo OX=3656 GN=LOC103486852 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.6e-40
Identity = 115/216 (53.24%), Postives = 126/216 (58.33%), Query Frame = 0


Query: 1   MAERGGFGRGFGG-------RGRGGRRRAVRRDEEEK----SRLSR-------------- 60
           MAERGGFGRGFGG       RGRGGRRRA RRDEEEK    ++L R              
Sbjct: 1   MAERGGFGRGFGGRGRGGGDRGRGGRRRAGRRDEEEKWVPVTKLGRLVKEGRIQSLEQIY 60

Query: 61  --SRPVLDREPVSRRLSSSAMVMAMWVWESSVVKRLPQRFVARLFWL------------- 120
             S P+ + + V   +  S     M +       R  QR   + F +             
Sbjct: 61  LHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 120

Query: 121 ----------------SCLLIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 161
                              +IPVRRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPRGA
Sbjct: 121 CSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGA 180

[Close]

BLAST of CmoCh06G000410 vs. ExPASy TrEMBL
Match: A0A6J1DDV4 (40S ribosomal protein S2-4-like OS=Momordica charantia OX=3673 GN=LOC111019870 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 114/215 (53.02%), Postives = 125/215 (58.14%), Query Frame = 0


Query: 1   MAERGGFGRGFGG------RGRGGRRRAVRRDEEEK----SRLSR--------------- 60
           MAERGGFGRGFGG      RGRGGRRR  RRDEEEK    ++L R               
Sbjct: 1   MAERGGFGRGFGGRGRGGDRGRGGRRRPGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYL 60

Query: 61  -SRPVLDREPVSRRLSSSAMVMAMWVWESSVVKRLPQRFVARLFWL-------------- 120
            S P+ + + V   +  S     M +       R  QR   + F +              
Sbjct: 61  HSLPIKEHQIVDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKC 120

Query: 121 ---------------SCLLIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAG 161
                             +IPVRRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPRGAG
Sbjct: 121 SKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAG 180

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BLAST of CmoCh06G000410 vs. TAIR 10
Match: AT1G58983.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 154.5 bits (389), Expect = 7.5e-38
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 84  LIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIED 143
           ++PVRRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+D
Sbjct: 155 VVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDD 214

Query: 144 VFTSSRGSTKTLGNFVK 161
           VFTSSRGSTKTLGNFVK
Sbjct: 215 VFTSSRGSTKTLGNFVK 231

[Close]

BLAST of CmoCh06G000410 vs. TAIR 10
Match: AT1G59359.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 154.5 bits (389), Expect = 7.5e-38
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 84  LIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIED 143
           ++PVRRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+D
Sbjct: 155 VVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDD 214

Query: 144 VFTSSRGSTKTLGNFVK 161
           VFTSSRGSTKTLGNFVK
Sbjct: 215 VFTSSRGSTKTLGNFVK 231

[Close]

BLAST of CmoCh06G000410 vs. TAIR 10
Match: AT1G58380.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 154.5 bits (389), Expect = 7.5e-38
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 84  LIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIED 143
           ++PVRRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+D
Sbjct: 155 VVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDD 214

Query: 144 VFTSSRGSTKTLGNFVK 161
           VFTSSRGSTKTLGNFVK
Sbjct: 215 VFTSSRGSTKTLGNFVK 231

[Close]

BLAST of CmoCh06G000410 vs. TAIR 10
Match: AT1G58684.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 154.5 bits (389), Expect = 7.5e-38
Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 84  LIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIED 143
           ++PVRRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIVAARVPKKVLQFAGI+D
Sbjct: 155 VVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDD 214

Query: 144 VFTSSRGSTKTLGNFVK 161
           VFTSSRGSTKTLGNFVK
Sbjct: 215 VFTSSRGSTKTLGNFVK 231

[Close]

BLAST of CmoCh06G000410 vs. TAIR 10
Match: AT3G57490.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 151.8 bits (382), Expect = 4.8e-37
Identity = 103/213 (48.36%), Postives = 119/213 (55.87%), Query Frame = 0


Query: 3   ERGGFGRGFGGRG------RGGRRRAVRRDEEEK----SRLSR----------------S 62
           +RG FGRGFGGRG      RG  RRA R  EEEK    ++L R                S
Sbjct: 11  DRGDFGRGFGGRGGGRGGPRGRGRRAGRAPEEEKWVPVTKLGRLVKEGKITKIEQIYLHS 70

Query: 63  RPVLDREPVSRRLSSSAMVMAMWVWESSVVKRLPQRFVARLFWL---------------- 122
            PV + + +   +  S     M +       R  QR   + F +                
Sbjct: 71  LPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSK 130

Query: 123 -------------SCLLIPVRRGYWGSKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIV 161
                           ++P+RRGYWG+KIGKPHTVPCKVTGKCGSVTVRMVPAPRG+GIV
Sbjct: 131 EVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIV 190

The following BLAST results are available for this feature:

BLAST of CmoCh06G000410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8Y0	1.1e-36	93.51	40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2	[more]
Q93VB8	1.1e-36	93.51	40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1	[more]
Q9SCM3	6.8e-36	48.36	40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1	[more]
P49688	8.9e-36	48.17	40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2	[more]
P27685	6.6e-31	78.95	40S ribosomal protein S2 OS=Dictyostelium discoideum OX=44689 GN=rps2 PE=1 SV=1	[more]

BLAST of CmoCh06G000410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPL0	3.6e-40	53.24	40S ribosomal protein S2-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
E5GBY7	3.6e-40	53.24	40S ribosomal protein s2 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A0A0LFC7	3.6e-40	53.24	S5 DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G816100 PE=...	[more]
A0A1S3B7F9	3.6e-40	53.24	40S ribosomal protein S2-3-like OS=Cucumis melo OX=3656 GN=LOC103486852 PE=3 SV=...	[more]
A0A6J1DDV4	1.4e-39	53.02	40S ribosomal protein S2-4-like OS=Momordica charantia OX=3673 GN=LOC111019870 P...	[more]

BLAST of CmoCh06G000410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G58983.1	7.5e-38	93.51	Ribosomal protein S5 family protein	[more]
AT1G59359.1	7.5e-38	93.51	Ribosomal protein S5 family protein	[more]
AT1G58380.1	7.5e-38	93.51	Ribosomal protein S5 family protein	[more]
AT1G58684.1	7.5e-38	93.51	Ribosomal protein S5 family protein	[more]
AT3G57490.1	4.8e-37	48.36	Ribosomal protein S5 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 87..161 e-value: 3.6E-39 score: 134.8
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 107..160 e-value: 3.8E-18 score: 64.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR13718:SF102	BNAA03G19630D PROTEIN	coord: 84..160
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 84..160
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 100..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000410.1	CmoCh06G000410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome