CmoCh06G000280 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	HTH myb-type domain-containing protein
Location	Cmo_Chr06: 191731 .. 192588 (+)
RNA-Seq Expression	CmoCh06G000280
Synteny	CmoCh06G000280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGAAGATGATTCTAATTGGTTTTCAAAATGGGATCAGGAGCTTCCCTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTTTGGCATTTGATATCAGAAACCCAGATAGTTCCATCAACAACAACAACCACCACCCACCGCCTCCGCCGCCTCCGGTGCCAATCCAGCCGAGTTCGGCCGATTTTGGGGATTCTGGTGATTTTGTGTCTGGCGCCGGCGCTGGAGACGAACCTGCGCGGACCCTGAAGAGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTTGTCGACGCGGTCGGCCATTTGGGAATAAAAAATGCTGTACCTAAAACCATAATGCAGTTGATGAGCGTGGATGGGTTAACTCGTGAGAACGTGGCTAGCCATTTGCAGAAATATCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGTGGCGGCGGAGTTAGTGGCGGTGCTGGATTAGTTTCACCCGTTTCAGATCCTGCTACCGACCATTTGTTCGCCAGCTCTCCAGTTCCACCGCATTTTCTTCACTCCTCTCGGGCTAATTCCGACCATTTCCTGCCGTTTGTGCCCGTCGGCGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCTGCCGCTCAATACCACCGACAAGTAGCCCATTTTGGGTCGCCGCCTAATGGGCAGTTTGAGCATCCGTTCTTAGCTCGGCCTGTTCACCGGATTGGGACCCCTGTGACTACCCCGGCGACGAATTACAGCGAGGATTTGGATTCGAGTAATGGAACAGGAGGGAGGAAGGTTCTCACTCTTTTCCCCACCGGAAACGATTAA

mRNA sequence

ATGAGGGAAGATGATTCTAATTGGTTTTCAAAATGGGATCAGGAGCTTCCCTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTTTGGCATTTGATATCAGAAACCCAGATAGTTCCATCAACAACAACAACCACCACCCACCGCCTCCGCCGCCTCCGGTGCCAATCCAGCCGAGTTCGGCCGATTTTGGGGATTCTGGTGATTTTGTGTCTGGCGCCGGCGCTGGAGACGAACCTGCGCGGACCCTGAAGAGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTTGTCGACGCGGTCGGCCATTTGGGAATAAAAAATGCTGTACCTAAAACCATAATGCAGTTGATGAGCGTGGATGGGTTAACTCGTGAGAACGTGGCTAGCCATTTGCAGAAATATCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGTGGCGGCGGAGTTAGTGGCGGTGCTGGATTAGTTTCACCCGTTTCAGATCCTGCTACCGACCATTTGTTCGCCAGCTCTCCAGTTCCACCGCATTTTCTTCACTCCTCTCGGGCTAATTCCGACCATTTCCTGCCGTTTGTGCCCGTCGGCGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCTGCCGCTCAATACCACCGACAAGTAGCCCATTTTGGGTCGCCGCCTAATGGGCAGTTTGAGCATCCGTTCTTAGCTCGGCCTGTTCACCGGATTGGGACCCCTGTGACTACCCCGGCGACGAATTACAGCGAGGATTTGGATTCGAGTAATGGAACAGGAGGGAGGAAGGTTCTCACTCTTTTCCCCACCGGAAACGATTAA

Coding sequence (CDS)

ATGAGGGAAGATGATTCTAATTGGTTTTCAAAATGGGATCAGGAGCTTCCCTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTTTGGCATTTGATATCAGAAACCCAGATAGTTCCATCAACAACAACAACCACCACCCACCGCCTCCGCCGCCTCCGGTGCCAATCCAGCCGAGTTCGGCCGATTTTGGGGATTCTGGTGATTTTGTGTCTGGCGCCGGCGCTGGAGACGAACCTGCGCGGACCCTGAAGAGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTTGTCGACGCGGTCGGCCATTTGGGAATAAAAAATGCTGTACCTAAAACCATAATGCAGTTGATGAGCGTGGATGGGTTAACTCGTGAGAACGTGGCTAGCCATTTGCAGAAATATCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGTGGCGGCGGAGTTAGTGGCGGTGCTGGATTAGTTTCACCCGTTTCAGATCCTGCTACCGACCATTTGTTCGCCAGCTCTCCAGTTCCACCGCATTTTCTTCACTCCTCTCGGGCTAATTCCGACCATTTCCTGCCGTTTGTGCCCGTCGGCGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCTGCCGCTCAATACCACCGACAAGTAGCCCATTTTGGGTCGCCGCCTAATGGGCAGTTTGAGCATCCGTTCTTAGCTCGGCCTGTTCACCGGATTGGGACCCCTGTGACTACCCCGGCGACGAATTACAGCGAGGATTTGGATTCGAGTAATGGAACAGGAGGGAGGAAGGTTCTCACTCTTTTCCCCACCGGAAACGATTAA

Protein sequence

MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNHHPPPPPPPVPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLFASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND

Homology

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BLAST of CmoCh06G000280 vs. ExPASy Swiss-Prot
Match: O22210 (Transcription factor MYBC1 OS=Arabidopsis thaliana OX=3702 GN=MYBC1 PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.2e-61
Identity = 134/216 (62.04%), Postives = 158/216 (73.15%), Query Frame = 0


Query: 1   MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNN----HH--- 60
           MRED+ NWF +W++ELPSP+EL+P+SQTLITP LALAF I +P+  + +      +H   
Sbjct: 1   MREDNPNWFLRWEEELPSPEELIPISQTLITPHLALAFQIGSPNHHLGSKRTTAIYHQKL 60

Query: 61  -----PPPPPPPVPIQPSSADF--GDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFV 120
                P  P P  P    ++DF  GDS D  SG+  G EPARTLKRPRLVWTPQLHKRFV
Sbjct: 61  QSSTTPTTPTPTPPPMMMNSDFGGGDSTDLGSGS-IGGEPARTLKRPRLVWTPQLHKRFV 120

Query: 121 DAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAG 180
           DAVGHLGIKNAVPKTIMQLMSV+GLTRENVASHLQKYRLYL+RMQ   GG+G G++GG  
Sbjct: 121 DAVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKYRLYLRRMQ---GGNGNGITGGHV 180

Query: 181 LVSPVSDPATDHLFASSPVPPHFLHSSRANSDHFLP 203
           +   VSD ATD LFASSPVP HFL     + D+ +P
Sbjct: 181 I---VSDSATDRLFASSPVPAHFL-----SPDYLMP 204

[Close]

BLAST of CmoCh06G000280 vs. ExPASy Swiss-Prot
Match: Q9SNB4 (Transcription factor LUX OS=Arabidopsis thaliana OX=3702 GN=LUX PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.2e-36
Identity = 100/225 (44.44%), Postives = 121/225 (53.78%), Query Frame = 0


Query: 5   DSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDI------------------------ 64
           D +  S+W+  LPS ++L  LS +LI P+LA+AF I                        
Sbjct: 15  DGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLSSLRG 74

Query: 65  --RNPDSSINNNNHH------PPPPPPPVPIQPSSADFGDSGDFV----------SGAGA 124
               P++S +NNN           P      Q +S   GD G  V            +G 
Sbjct: 75  GSSGPNTSSSNNNVEEEDRVGSSSPGSDSKKQKTSNGDGDDGGGVDPDSAMAAEEGDSGT 134

Query: 125 GDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQK 184
            D   +TLKRPRLVWTPQLHKRFVD V HLGIKNAVPKTIMQLM+V+GLTRENVASHLQK
Sbjct: 135 EDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQK 194

Query: 185 YRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLFASSPVPP 188
           YRLYLKRMQG++                    A+D LF+S+PVPP
Sbjct: 195 YRLYLKRMQGLTN---------------EGPSASDKLFSSTPVPP 224

[Close]

BLAST of CmoCh06G000280 vs. ExPASy Swiss-Prot
Match: Q94DH3 (Transcription factor PCL1 OS=Oryza sativa subsp. japonica OX=39947 GN=PCL1 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-33
Identity = 102/235 (43.40%), Postives = 123/235 (52.34%), Query Frame = 0


Query: 11  KWDQELPSPDELMPLSQTLITPDLALAFDI------------RNPDSSINNNNHHPPPPP 70
           +W+  LP  DEL PLSQ L+   LA AF I            R   ++++          
Sbjct: 21  EWETGLPGADELTPLSQPLVPAGLAAAFRIPPEPGRTLLDVHRASAATVSRLRRASSSSS 80

Query: 71  PPVPIQPS-----SADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLG 130
              P   S      AD  +SG    G G G+    + KR RLVWTPQLHKRFV+ V HLG
Sbjct: 81  SSFPAFASKGAGTGADEAESGGGADG-GNGNTNNSSSKRARLVWTPQLHKRFVEVVAHLG 140

Query: 131 IKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSD 190
           +KNAVPKTIMQLM+V+GLTRENVASHLQKYRLY+KRMQG+S              SP   
Sbjct: 141 MKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYVKRMQGLSNEG----------PSP--- 200

Query: 191 PATDHLFASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQ----MAAAAAAQYH 225
             +DH+FAS+PVP   LH    +  H  P        HHH       AA  + YH
Sbjct: 201 --SDHIFASTPVPHASLHDQVPSPYHPHP--------HHHSYNNAAYAATVSSYH 231

[Close]

BLAST of CmoCh06G000280 vs. ExPASy Swiss-Prot
Match: Q9LTH4 (Transcription factor BOA OS=Arabidopsis thaliana OX=3702 GN=BOA PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.6e-32
Identity = 108/284 (38.03%), Postives = 145/284 (51.06%), Query Frame = 0


Query: 11  KWDQELPSPDELMPLSQTLITPDLALAF-----------DIRNPD----SSINNNNHH-- 70
           +W+  LP+ D+L PLSQ L+   LALAF           D+        SS+ ++ +   
Sbjct: 28  EWEIGLPNGDDLTPLSQYLVPSILALAFSMIPERSRTIHDVNRASQITLSSLRSSTNASS 87

Query: 71  ---------PPPPPPPVPIQPSSADFG------DSGDFVSGAGAGDEPARTLKRPRLVWT 130
                        P   P +   +D G      DS      +G  D   +T KRPRLVWT
Sbjct: 88  VMEEVVDRVESSVPGSDPKKQKKSDGGEAAAVEDSTAEEGDSGPEDASGKTSKRPRLVWT 147

Query: 131 PQLHKRFVDAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSG 190
           PQLHKRFVD V HLGIKNAVPKTIMQLM+V+GLTRENVASHLQKYRLYLKR+QG++    
Sbjct: 148 PQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRIQGLTTEE- 207

Query: 191 GGVSGGAGLVSPVSDPATDHLFASSPVPPHFLHSSRANSDHFLPFVPVGAL----QHHHQ 250
                      P S  ++D LF+S+PVPP        ++      VPV ++     + +Q
Sbjct: 208 ----------DPYS--SSDQLFSSTPVPPQSFQDGGGSNGKLGVPVPVPSMVPIPGYGNQ 267

Query: 251 MAAAAAAQYHRQVAHFGSPPNGQFEHPFLARPVHRIGTPVTTPA 259
           M       Y++Q ++ G+  N            ++ GT VT P+
Sbjct: 268 MGMQG---YYQQYSNHGNESNQYMMQQ------NKFGTMVTYPS 289

[Close]

BLAST of CmoCh06G000280 vs. ExPASy Swiss-Prot
Match: Q940D0 (Two-component response regulator ARR1 OS=Arabidopsis thaliana OX=3702 GN=ARR1 PE=1 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-20
Identity = 46/75 (61.33%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 84  DEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKY 143
           DE A  LK+PR+VW+ +LH++FV AV  LG++ AVPK I++LM+V GLTRENVASHLQKY
Sbjct: 229 DEDASNLKKPRVVWSVELHQQFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQKY 288

Query: 144 RLYLKRMQGISGGSG 159
           R+YL+R+ G+S   G
Sbjct: 289 RIYLRRLGGVSQHQG 303

[Close]

BLAST of CmoCh06G000280 vs. ExPASy TrEMBL
Match: A0A6J1H3F6 (transcription factor MYBC1-like OS=Cucurbita moschata OX=3662 GN=LOC111459631 PE=4 SV=1)

HSP 1 Score: 585.1 bits (1507), Expect = 1.6e-163
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0


Query: 1   MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNHHPPPPPPP 60
           MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNHHPPPPPPP
Sbjct: 1   MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNHHPPPPPPP 60

Query: 61  VPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPK 120
           VPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPK
Sbjct: 61  VPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPK 120

Query: 121 TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLF 180
           TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLF
Sbjct: 121 TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLF 180

Query: 181 ASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEH 240
           ASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEH
Sbjct: 181 ASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEH 240

Query: 241 PFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND 286
           PFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND
Sbjct: 241 PFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND 285

[Close]

BLAST of CmoCh06G000280 vs. ExPASy TrEMBL
Match: A0A6J1I541 (transcription factor MYBC1-like OS=Cucurbita maxima OX=3661 GN=LOC111469997 PE=4 SV=1)

HSP 1 Score: 574.7 bits (1480), Expect = 2.1e-160
Identity = 282/288 (97.92%), Postives = 283/288 (98.26%), Query Frame = 0


Query: 1   MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSI---NNNNHHPPPP 60
           MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSI   NNNNHHPPPP
Sbjct: 1   MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNNNNHHPPPP 60

Query: 61  PPPVPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNA 120
           PPPVPIQPSSADFGDSGDFVSGAGAG+EPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNA
Sbjct: 61  PPPVPIQPSSADFGDSGDFVSGAGAGEEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNA 120

Query: 121 VPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATD 180
           VPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGI GGSGGGVSGGAGLVSPVSDPATD
Sbjct: 121 VPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGIPGGSGGGVSGGAGLVSPVSDPATD 180

Query: 181 HLFASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQ 240
           HLFASSPVPPHFLHSSR NSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQ
Sbjct: 181 HLFASSPVPPHFLHSSRTNSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQ 240

Query: 241 FEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND 286
           FEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND
Sbjct: 241 FEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND 288

[Close]

BLAST of CmoCh06G000280 vs. ExPASy TrEMBL
Match: A0A5A7UK93 (Transcription factor PCL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006440 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 5.6e-137
Identity = 250/289 (86.51%), Postives = 263/289 (91.00%), Query Frame = 0


Query: 1   MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNHHPPPPPPP 60
           M+EDDSNWFSKW+QELPSPDELMPLSQTLITPDLALAFDI N  + +N+++  PPPPPPP
Sbjct: 1   MKEDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDITN-SNPLNDSHPPPPPPPPP 60

Query: 61  VPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPK 120
           V IQPSSADF DSGD   G+GAGDEPARTLKRPRLVWTPQLHKRFVDAV HLGIKNAVPK
Sbjct: 61  VIIQPSSADFADSGDL--GSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPK 120

Query: 121 TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLF 180
           TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGG +GGAGLVSP SDPATDHLF
Sbjct: 121 TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGANGGAGLVSPASDPATDHLF 180

Query: 181 ASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQM--AAAAAAQYHRQVAHFGS--PPNG 240
           ASSPVPPHFLHS+R NSDHFLPFVPVGALQHHH    AAAAAAQYHRQVAHFGS  P NG
Sbjct: 181 ASSPVPPHFLHSARGNSDHFLPFVPVGALQHHHHQMAAAAAAAQYHRQVAHFGSSPPTNG 240

Query: 241 QFEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND 286
           QFE+ FLARPVHR+G PV+TP TNYSEDLDS NGTGGRKVLTLFPTGND
Sbjct: 241 QFENTFLARPVHRVGAPVSTPVTNYSEDLDSGNGTGGRKVLTLFPTGND 286

[Close]

BLAST of CmoCh06G000280 vs. ExPASy TrEMBL
Match: A0A1S3B723 (transcription factor PCL1-like OS=Cucumis melo OX=3656 GN=LOC103486866 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 5.6e-137
Identity = 250/289 (86.51%), Postives = 263/289 (91.00%), Query Frame = 0


Query: 1   MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNHHPPPPPPP 60
           M+EDDSNWFSKW+QELPSPDELMPLSQTLITPDLALAFDI N  + +N+++  PPPPPPP
Sbjct: 1   MKEDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDITN-SNPLNDSHPPPPPPPPP 60

Query: 61  VPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPK 120
           V IQPSSADF DSGD   G+GAGDEPARTLKRPRLVWTPQLHKRFVDAV HLGIKNAVPK
Sbjct: 61  VIIQPSSADFADSGDL--GSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPK 120

Query: 121 TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLF 180
           TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGG +GGAGLVSP SDPATDHLF
Sbjct: 121 TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGANGGAGLVSPASDPATDHLF 180

Query: 181 ASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQM--AAAAAAQYHRQVAHFGS--PPNG 240
           ASSPVPPHFLHS+R NSDHFLPFVPVGALQHHH    AAAAAAQYHRQVAHFGS  P NG
Sbjct: 181 ASSPVPPHFLHSARGNSDHFLPFVPVGALQHHHHQMAAAAAAAQYHRQVAHFGSSPPTNG 240

Query: 241 QFEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND 286
           QFE+ FLARPVHR+G PV+TP TNYSEDLDS NGTGGRKVLTLFPTGND
Sbjct: 241 QFENTFLARPVHRVGAPVSTPVTNYSEDLDSGNGTGGRKVLTLFPTGND 286

[Close]

BLAST of CmoCh06G000280 vs. ExPASy TrEMBL
Match: A0A0A0LC84 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G817730 PE=4 SV=1)

HSP 1 Score: 488.8 bits (1257), Expect = 1.5e-134
Identity = 247/289 (85.47%), Postives = 260/289 (89.97%), Query Frame = 0


Query: 1   MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNHHPPPPPPP 60
           M+EDDSNWFSKW+QELPSPDELMPLSQTLITPDLALAFDI N +   N+++  PPPPPPP
Sbjct: 1   MKEDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDITNSNPP-NDSHPPPPPPPPP 60

Query: 61  VPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPK 120
           V IQP+SADF DSGD   G+GAGDEPARTLKRPRLVWTPQLHKRFVDAV HLGIKNAVPK
Sbjct: 61  VLIQPTSADFADSGDL--GSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPK 120

Query: 121 TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLF 180
           TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGG +GGAGLVS  SDPATDHLF
Sbjct: 121 TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGANGGAGLVSTASDPATDHLF 180

Query: 181 ASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQM--AAAAAAQYHRQVAHFGS--PPNG 240
           ASSPVPPHFLHS+R NSDHFLPFVPVGALQHHH    AAAAAAQYHRQVAHFGS  P NG
Sbjct: 181 ASSPVPPHFLHSARGNSDHFLPFVPVGALQHHHHQMAAAAAAAQYHRQVAHFGSSPPTNG 240

Query: 241 QFEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND 286
           QFE+ FLARPVHR+G P +TP TNYSEDLDS NGTGGRKVLTLFPTGND
Sbjct: 241 QFENTFLARPVHRVGAPASTPVTNYSEDLDSGNGTGGRKVLTLFPTGND 286

[Close]

BLAST of CmoCh06G000280 vs. TAIR 10
Match: AT3G10760.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 344.4 bits (882), Expect = 9.0e-95
Identity = 201/346 (58.09%), Postives = 230/346 (66.47%), Query Frame = 0


Query: 1   MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNN------HHP 60
           MREDDS+WF++W++ELPSP+ELMP+SQ+LI+PDLALAFDIR P+    N+N      HH 
Sbjct: 1   MREDDSDWFARWEEELPSPEELMPISQSLISPDLALAFDIRTPNHGNGNSNQPHHHHHHQ 60

Query: 61  PPPPPPVPIQ------PSSADF-GDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVD 120
             PP P  +Q       SSA+F  DS D  SG  AGDEPARTLKRPRLVWTPQLHKRFVD
Sbjct: 61  TTPPTPSQLQLPSSQANSSAEFAADSADLGSGGAAGDEPARTLKRPRLVWTPQLHKRFVD 120

Query: 121 AVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGL 180
           AV HLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG+S G G G       
Sbjct: 121 AVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGAG------- 180

Query: 181 VSPVSDPATDHLFASSPVPPHFLHSSRA-NSDHFLP-FVPVGALQHHHQMAAAAAA---- 240
               SDPATD LFASSPVP HFLH +R  +SDHF+P FVP+  LQ   QMAAAAAA    
Sbjct: 181 ----SDPATDRLFASSPVPAHFLHPNRVPSSDHFMPSFVPIATLQQQQQMAAAAAAAAAA 240

Query: 241 -------QYHRQV--AHFGSPPNGQFEHP--------------------------FLA-- 286
                  Q+HRQ+  AHFGSP NG F  P                          FLA  
Sbjct: 241 NPHLQPPQFHRQIAAAHFGSPTNGGFSSPTSNGQFGSPTSNGFGSPTTNGKFDPSFLAVR 300

[Close]

BLAST of CmoCh06G000280 vs. TAIR 10
Match: AT5G05090.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 287.7 bits (735), Expect = 1.0e-77
Identity = 171/297 (57.58%), Postives = 205/297 (69.02%), Query Frame = 0


Query: 1   MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNHHPPPPPPP 60
           MRE+DSNWF+KW++ELPSP+EL+PLSQ+LITPDLA+AFD+       NNN++   P P  
Sbjct: 1   MREEDSNWFAKWEEELPSPEELIPLSQSLITPDLAIAFDLHR-----NNNSNSGQPLPQT 60

Query: 61  VPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPK 120
            P QP+S+        ++G   GDEPARTLKRPRLVWTPQLHKRFVDAV HLGIKNAVPK
Sbjct: 61  TPPQPNSS------AEIAGDSTGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPK 120

Query: 121 TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLF 180
           TIMQLMSVDGLTRENVASHLQKYRLYLKRM+  SGG GGG SG            +DHLF
Sbjct: 121 TIMQLMSVDGLTRENVASHLQKYRLYLKRMK--SGGGGGG-SGD-----------SDHLF 180

Query: 181 ASSPVPPHFLH-SSRANSDHFLP-FVPVGALQHHHQMAAAAAAQYHRQVA--HFGSPPNG 240
           ASSPVPPHFLH +SR +SD F+P FVP+   Q H  +AA  +   HRQ++  +F SP   
Sbjct: 181 ASSPVPPHFLHPTSRQSSDLFIPSFVPISTQQQH--IAAPPSQFLHRQISAVNFTSPTKA 240

Query: 241 QFEHPFLARPVHRIGTPVTTPAT--------NYSEDLDSSNGTGGRKVLTLFPTGND 286
             +  FLAR    +  PV  P++        NY++DL S    G + VLTLFPT +D
Sbjct: 241 TDQAMFLARQQSELQQPVFKPSSLHLHSQVANYTQDLKS----GAKTVLTLFPTRDD 266

[Close]

BLAST of CmoCh06G000280 vs. TAIR 10
Match: AT2G40970.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 237.3 bits (604), Expect = 1.6e-62
Identity = 134/216 (62.04%), Postives = 158/216 (73.15%), Query Frame = 0


Query: 1   MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNN----HH--- 60
           MRED+ NWF +W++ELPSP+EL+P+SQTLITP LALAF I +P+  + +      +H   
Sbjct: 1   MREDNPNWFLRWEEELPSPEELIPISQTLITPHLALAFQIGSPNHHLGSKRTTAIYHQKL 60

Query: 61  -----PPPPPPPVPIQPSSADF--GDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFV 120
                P  P P  P    ++DF  GDS D  SG+  G EPARTLKRPRLVWTPQLHKRFV
Sbjct: 61  QSSTTPTTPTPTPPPMMMNSDFGGGDSTDLGSGS-IGGEPARTLKRPRLVWTPQLHKRFV 120

Query: 121 DAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAG 180
           DAVGHLGIKNAVPKTIMQLMSV+GLTRENVASHLQKYRLYL+RMQ   GG+G G++GG  
Sbjct: 121 DAVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKYRLYLRRMQ---GGNGNGITGGHV 180

Query: 181 LVSPVSDPATDHLFASSPVPPHFLHSSRANSDHFLP 203
           +   VSD ATD LFASSPVP HFL     + D+ +P
Sbjct: 181 I---VSDSATDRLFASSPVPAHFL-----SPDYLMP 204

[Close]

BLAST of CmoCh06G000280 vs. TAIR 10
Match: AT3G46640.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-37
Identity = 100/225 (44.44%), Postives = 121/225 (53.78%), Query Frame = 0


Query: 5   DSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDI------------------------ 64
           D +  S+W+  LPS ++L  LS +LI P+LA+AF I                        
Sbjct: 15  DGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLSSLRG 74

Query: 65  --RNPDSSINNNNHH------PPPPPPPVPIQPSSADFGDSGDFV----------SGAGA 124
               P++S +NNN           P      Q +S   GD G  V            +G 
Sbjct: 75  GSSGPNTSSSNNNVEEEDRVGSSSPGSDSKKQKTSNGDGDDGGGVDPDSAMAAEEGDSGT 134

Query: 125 GDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQK 184
            D   +TLKRPRLVWTPQLHKRFVD V HLGIKNAVPKTIMQLM+V+GLTRENVASHLQK
Sbjct: 135 EDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQK 194

Query: 185 YRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLFASSPVPP 188
           YRLYLKRMQG++                    A+D LF+S+PVPP
Sbjct: 195 YRLYLKRMQGLTN---------------EGPSASDKLFSSTPVPP 224

[Close]

BLAST of CmoCh06G000280 vs. TAIR 10
Match: AT3G46640.2 (Homeodomain-like superfamily protein )

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-37
Identity = 100/225 (44.44%), Postives = 121/225 (53.78%), Query Frame = 0


Query: 5   DSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDI------------------------ 64
           D +  S+W+  LPS ++L  LS +LI P+LA+AF I                        
Sbjct: 15  DGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLSSLRG 74

Query: 65  --RNPDSSINNNNHH------PPPPPPPVPIQPSSADFGDSGDFV----------SGAGA 124
               P++S +NNN           P      Q +S   GD G  V            +G 
Sbjct: 75  GSSGPNTSSSNNNVEEEDRVGSSSPGSDSKKQKTSNGDGDDGGGVDPDSAMAAEEGDSGT 134

Query: 125 GDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQK 184
            D   +TLKRPRLVWTPQLHKRFVD V HLGIKNAVPKTIMQLM+V+GLTRENVASHLQK
Sbjct: 135 EDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQK 194

Query: 185 YRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLFASSPVPP 188
           YRLYLKRMQG++                    A+D LF+S+PVPP
Sbjct: 195 YRLYLKRMQGLTN---------------EGPSASDKLFSSTPVPP 224

The following BLAST results are available for this feature:

BLAST of CmoCh06G000280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22210	2.2e-61	62.04	Transcription factor MYBC1 OS=Arabidopsis thaliana OX=3702 GN=MYBC1 PE=1 SV=1	[more]
Q9SNB4	3.2e-36	44.44	Transcription factor LUX OS=Arabidopsis thaliana OX=3702 GN=LUX PE=1 SV=1	[more]
Q94DH3	1.9e-33	43.40	Transcription factor PCL1 OS=Oryza sativa subsp. japonica OX=39947 GN=PCL1 PE=2 ...	[more]
Q9LTH4	3.6e-32	38.03	Transcription factor BOA OS=Arabidopsis thaliana OX=3702 GN=BOA PE=2 SV=1	[more]
Q940D0	1.1e-20	61.33	Two-component response regulator ARR1 OS=Arabidopsis thaliana OX=3702 GN=ARR1 PE...	[more]

BLAST of CmoCh06G000280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H3F6	1.6e-163	100.00	transcription factor MYBC1-like OS=Cucurbita moschata OX=3662 GN=LOC111459631 PE...	[more]
A0A6J1I541	2.1e-160	97.92	transcription factor MYBC1-like OS=Cucurbita maxima OX=3661 GN=LOC111469997 PE=4...	[more]
A0A5A7UK93	5.6e-137	86.51	Transcription factor PCL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B723	5.6e-137	86.51	transcription factor PCL1-like OS=Cucumis melo OX=3656 GN=LOC103486866 PE=4 SV=1	[more]
A0A0A0LC84	1.5e-134	85.47	HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G81773...	[more]

BLAST of CmoCh06G000280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10760.1	9.0e-95	58.09	Homeodomain-like superfamily protein	[more]
AT5G05090.1	1.0e-77	57.58	Homeodomain-like superfamily protein	[more]
AT2G40970.1	1.6e-62	62.04	Homeodomain-like superfamily protein	[more]
AT3G46640.1	2.3e-37	44.44	Homeodomain-like superfamily protein	[more]
AT3G46640.2	2.3e-37	44.44	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 96..144 e-value: 1.5E-7 score: 31.5
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 97..148 score: 10.851604
None	No IPR available	GENE3D	1.10.10.60		coord: 89..151 e-value: 1.7E-31 score: 110.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..87
None	No IPR available	PANTHER	PTHR31442:SF31	HOMEODOMAIN-LIKE PROTEIN-RELATED	coord: 1..285
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 93..145 e-value: 5.5E-24 score: 82.2
IPR044841	Transcription factor LUX/BOA-like	PANTHER	PTHR31442	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 1..285
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 89..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000280.1	CmoCh06G000280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity