CmoCh06G000070 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000070
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	zinc-finger homeodomain protein 4-like
Location	Cmo_Chr06: 34618 .. 35451 (+)
RNA-Seq Expression	CmoCh06G000070
Synteny	CmoCh06G000070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAGACTACTGAACATCCTCCCATTCCCATCCCTTTAAATGCTCGCTATGGCGGCCACCACCACCATGACCCCTCTGCCACCTGCAACCACATCATTGCCGCCGCATCTGCGGTCAATGGCGGCAATCCACTCCCACCCTTCCACATGGAAATAGATCTCCACCGTAATAACAACAACAACAGCAACAATAACAAGAAGCATGTCAAATACAAAGAGTGCCTCAAAAACCATGCTGCCTCCATGGGAGGAAATGCCACGGATGGCTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCACTCACATGCTCCGCGTGCAACTGCCATAGAAACTTCCATCGAAAAGAGATCGACCACCCCCTCCTCGGCCGCAAGCTTCTCGTTGGGGGTAAGAACATGATCGCCATGCCTGAGACCACCACGTTCGCCTACCCAACTGCGGCGGGGGCGGCATTCCTATCATCCAGAGCAATGACAGCACAACCCCACCACATGATAATGCCGTACAACATGCTTGGCGGGGGCGGTGAGGAGCAGGAGGAGGCAGCAGGGGTGAGGGCGTACTCGGGGCAAATGACGAACAAGAAGCGATTCCGAACGAAGTTCACGGGGGAGCAGAAGGAGAGGATGCTGAGGTTTGCAGAGAAAATTGGATGGAAGATTCAGAAGGAAGAGGAGAGTGTGGCGCAACAATTGTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGGCACCAAGGAAACTACTTCCCCTTCCTCTTCCCATTCTCCCACTCCCTTGGATTAA

mRNA sequence

ATGGAGCAGACTACTGAACATCCTCCCATTCCCATCCCTTTAAATGCTCGCTATGGCGGCCACCACCACCATGACCCCTCTGCCACCTGCAACCACATCATTGCCGCCGCATCTGCGGTCAATGGCGGCAATCCACTCCCACCCTTCCACATGGAAATAGATCTCCACCGTAATAACAACAACAACAGCAACAATAACAAGAAGCATGTCAAATACAAAGAGTGCCTCAAAAACCATGCTGCCTCCATGGGAGGAAATGCCACGGATGGCTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCACTCACATGCTCCGCGTGCAACTGCCATAGAAACTTCCATCGAAAAGAGATCGACCACCCCCTCCTCGGCCGCAAGCTTCTCGTTGGGGGTAAGAACATGATCGCCATGCCTGAGACCACCACGTTCGCCTACCCAACTGCGGCGGGGGCGGCATTCCTATCATCCAGAGCAATGACAGCACAACCCCACCACATGATAATGCCGTACAACATGCTTGGCGGGGGCGGTGAGGAGCAGGAGGAGGCAGCAGGGGTGAGGGCGTACTCGGGGCAAATGACGAACAAGAAGCGATTCCGAACGAAGTTCACGGGGGAGCAGAAGGAGAGGATGCTGAGGTTTGCAGAGAAAATTGGATGGAAGATTCAGAAGGAAGAGGAGAGTGTGGCGCAACAATTGTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGGCACCAAGGAAACTACTTCCCCTTCCTCTTCCCATTCTCCCACTCCCTTGGATTAA

Coding sequence (CDS)

ATGGAGCAGACTACTGAACATCCTCCCATTCCCATCCCTTTAAATGCTCGCTATGGCGGCCACCACCACCATGACCCCTCTGCCACCTGCAACCACATCATTGCCGCCGCATCTGCGGTCAATGGCGGCAATCCACTCCCACCCTTCCACATGGAAATAGATCTCCACCGTAATAACAACAACAACAGCAACAATAACAAGAAGCATGTCAAATACAAAGAGTGCCTCAAAAACCATGCTGCCTCCATGGGAGGAAATGCCACGGATGGCTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCACTCACATGCTCCGCGTGCAACTGCCATAGAAACTTCCATCGAAAAGAGATCGACCACCCCCTCCTCGGCCGCAAGCTTCTCGTTGGGGGTAAGAACATGATCGCCATGCCTGAGACCACCACGTTCGCCTACCCAACTGCGGCGGGGGCGGCATTCCTATCATCCAGAGCAATGACAGCACAACCCCACCACATGATAATGCCGTACAACATGCTTGGCGGGGGCGGTGAGGAGCAGGAGGAGGCAGCAGGGGTGAGGGCGTACTCGGGGCAAATGACGAACAAGAAGCGATTCCGAACGAAGTTCACGGGGGAGCAGAAGGAGAGGATGCTGAGGTTTGCAGAGAAAATTGGATGGAAGATTCAGAAGGAAGAGGAGAGTGTGGCGCAACAATTGTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGGCACCAAGGAAACTACTTCCCCTTCCTCTTCCCATTCTCCCACTCCCTTGGATTAA

Protein sequence

MEQTTEHPPIPIPLNARYGGHHHHDPSATCNHIIAAASAVNGGNPLPPFHMEIDLHRNNNNNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQPHHMIMPYNMLGGGGEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKIGWKIQKEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTKETTSPSSSHSPTPLD

Homology

[Close]

BLAST of CmoCh06G000070 vs. ExPASy Swiss-Prot
Match: Q9M9S0 (Zinc-finger homeodomain protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZHD4 PE=1 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.3e-55
Identity = 134/291 (46.05%), Postives = 165/291 (56.70%), Query Frame = 0


Query: 6   EHPPIPIPLNARYGGH-------HHHDPSATCNHIIAAASAVNGGNPL---PPFHMEIDL 65
           E   +PIPLN  +GG        HHHD     +H   +A   +  N     PP  +  + 
Sbjct: 7   EDHDMPIPLNTTFGGGGSHGHMIHHHD-----HHAANSAPPTHNNNNTTQPPPMPLHGNG 66

Query: 66  HRNNNNNSNNNKKH------------VKYKECLKNHAASMGGNATDGCGEFMPSGEEGSI 125
           H NN ++ ++   H            +KYKECLKNHAA+MGGNATDGCGEFMPSGE+GSI
Sbjct: 67  HGNNYDHHHHQDPHHVGYNAIIKKPMIKYKECLKNHAAAMGGNATDGCGEFMPSGEDGSI 126

Query: 126 EALTCSACNCHRNFHRKEIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAM 185
           EALTCSACNCHRNFHRKE++  L             A   +    +P          +  
Sbjct: 127 EALTCSACNCHRNFHRKEVEGEL------------AATAMSPYHQHPPHRKLMLNHQKIR 186

Query: 186 TAQPHHMIMP-----YNMLGGGGEEQE--EAAGVRAYSGQMTN-----KKRFRTKFTGEQ 245
           +A PH MIMP     Y  +    E ++  E  GV   S  + N     KKRFRTKFT EQ
Sbjct: 187 SAMPHQMIMPIGVSNYRYMHNNSESEDFMEEDGVTTASRSLPNLPYNQKKRFRTKFTPEQ 246

Query: 246 KERMLRFAEKIGWKIQKEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTK 263
           KE+ML FAEK+GWKIQ++E+ V Q+ CEEIGVKRRVLKVWMHNNK +   K
Sbjct: 247 KEKMLSFAEKVGWKIQRQEDCVVQRFCEEIGVKRRVLKVWMHNNKIHFSKK 280

[Close]

BLAST of CmoCh06G000070 vs. ExPASy Swiss-Prot
Match: O64722 (Zinc-finger homeodomain protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZHD3 PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.1e-52
Identity = 125/286 (43.71%), Postives = 154/286 (53.85%), Query Frame = 0


Query: 11  PIPLNARYG---------GHHHHDPSA-------TCNHIIAAASAVN-GGNPLPPFHMEI 70
           PIP+N  YG          HHHH  SA       T N ++ ++++   G N     H  +
Sbjct: 9   PIPINTSYGNSGGGHGNMNHHHHANSAPSSLNITTSNPLLVSSNSNGLGKNHDHSHHHHV 68

Query: 71  DLHRNNNNNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNC 130
             +    N        +KYKECLKNHAA+MGGNA DGCGEFMPSGEEGSIEALTCS CNC
Sbjct: 69  GYNIMVTNIKKEKPVVIKYKECLKNHAATMGGNAIDGCGEFMPSGEEGSIEALTCSVCNC 128

Query: 131 HRNFHRKEIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQ-PHHMIM 190
           HRNFHR+E +          G +     P       P          + + +  P  MIM
Sbjct: 129 HRNFHRRETE----------GEEKTFFSPYLNHHQPPPQQRKLMFHHKMIKSPLPQQMIM 188

Query: 191 PYNMLGGGGEEQEEAAGVRAYSGQMT----------------NKKRFRTKFTGEQKERML 250
           P  +   G   + E        G +T                 KKRFRTKFT EQKE+M+
Sbjct: 189 PIGVTTAGSNSESEDLMEEEGGGSLTFRQPPPPPSPYSYGHNQKKRFRTKFTQEQKEKMI 248

Query: 251 RFAEKIGWKIQKEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTK 263
            FAE++GWKIQ++EESV QQLC+EIG++RRVLKVWMHNNK NL  K
Sbjct: 249 SFAERVGWKIQRQEESVVQQLCQEIGIRRRVLKVWMHNNKQNLSKK 284

[Close]

BLAST of CmoCh06G000070 vs. ExPASy Swiss-Prot
Match: Q53N87 (Zinc-finger homeodomain protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=ZHD4 PE=2 SV=2)

HSP 1 Score: 201.4 bits (511), Expect = 1.3e-50
Identity = 117/244 (47.95%), Postives = 145/244 (59.43%), Query Frame = 0


Query: 70  VKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEID------ 129
           VKY+ECLKNHAA++GGNATDGCGEFMPSGEEGS+EAL CSAC CHRNFHRKE D      
Sbjct: 143 VKYRECLKNHAAAIGGNATDGCGEFMPSGEEGSLEALKCSACGCHRNFHRKEADDLDADS 202

Query: 130 ------------HPLLGRKL-----LVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQ 189
                       H LLG  L       GG  ++A  +          GAA+ ++RA+   
Sbjct: 203 CAAALRAAAGRHHHLLGPALPHHHHKNGGGLLVAGGD--------PYGAAYAAARALPPP 262

Query: 190 P----------HHMIMPYNMLGGGGEEQEEAAG-----VRAYSGQMTNKKRFRTKFTGEQ 249
           P          H +IMP NM+     ++ + +G      R      ++KKRFRTKFT EQ
Sbjct: 263 PPPPPHGHHHHHQIIMPLNMIHTSESDEMDVSGGGGGVGRGGGSSSSSKKRFRTKFTAEQ 322

Query: 250 KERMLRFAEKIGWKIQKEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTKETTSPSSSH 276
           K RML FAE++GW++QK ++++    C+EIGVKRRVLKVWMHNNKHNL  K    P  S 
Sbjct: 323 KARMLEFAERVGWRLQKLDDAMVHHFCQEIGVKRRVLKVWMHNNKHNLAKK----PLPSS 374

[Close]

BLAST of CmoCh06G000070 vs. ExPASy Swiss-Prot
Match: Q2QW44 (Zinc-finger homeodomain protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ZHD3 PE=3 SV=3)

HSP 1 Score: 178.7 bits (452), Expect = 9.0e-44
Identity = 117/275 (42.55%), Postives = 152/275 (55.27%), Query Frame = 0


Query: 10  IPIPLNAR-------YGGHHHHDPSATCNHIIAAASAVNGGN---PLPPFHMEIDLHRNN 69
           +P+P++A        +  HHHH               +NG +   P PP   E    +  
Sbjct: 10  LPLPMHAAASPYLGLHHDHHHHHGGG------GGGGGMNGRHMSPPTPPAAAEES--KAV 69

Query: 70  NNNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHR 129
              S++     +Y+ECLKNHAA++GG+ATDGCGEFMP GEEGS++AL CSAC CHRNFHR
Sbjct: 70  VVVSSSATAAARYRECLKNHAAAIGGSATDGCGEFMPGGEEGSLDALRCSACGCHRNFHR 129

Query: 130 KEID-----------HPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSR-AMTAQP 189
           KE+D           H LLG    VG             A+P   G        A    P
Sbjct: 130 KELDAAAAPPLHHHHHQLLG----VG-------------AHPRGHGHHHHHLLVAALPPP 189

Query: 190 HHMIMPYNMLGGGGEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKIGWKIQ 249
             M+MP + +     E ++AA      G    +KRFRTKFT EQK RML FAE++GW++Q
Sbjct: 190 TRMVMPLSAM--HTSESDDAAA--RPGGGAAARKRFRTKFTAEQKARMLGFAEEVGWRLQ 249

Query: 250 KEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTK 263
           K E++V Q+ C+E+GVKRRVLKVWMHNNKH L  +
Sbjct: 250 KLEDAVVQRFCQEVGVKRRVLKVWMHNNKHTLARR 255

[Close]

BLAST of CmoCh06G000070 vs. ExPASy Swiss-Prot
Match: A2Z259 (Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=ZHD1 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.2e-42
Identity = 98/223 (43.95%), Postives = 128/223 (57.40%), Query Frame = 0


Query: 71  KYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDHPLLGRK 130
           +Y+ECLKNHA  +GG+A DGCGEFM +GEEG+I+AL C+ACNCHRNFHRKE    L G  
Sbjct: 56  RYRECLKNHAVGIGGHAVDGCGEFMAAGEEGTIDALRCAACNCHRNFHRKE-SESLAGEG 115

Query: 131 LLVGGKNMIAMPETTTFA----YPTAAG-----------AAFLSSRAMTAQPHHMIMPYN 190
                  ++    T        Y T AG           AA  ++ A    P   +   +
Sbjct: 116 SPFSPAAVVPYGATPHHQFSPYYRTPAGYLHHHQHHMAAAAAAAAAAAGGHPQRPLALPS 175

Query: 191 MLGGGGEEQEEAAGV----------------RAYSGQMTNKKRFRTKFTGEQKERMLRFA 250
               G ++ ++ +G+                   SG  + KKRFRTKFT EQK++ML FA
Sbjct: 176 TSHSGRDDGDDLSGMVGPMSAVGPLSGMSLGAGPSGSGSGKKRFRTKFTQEQKDKMLAFA 235

Query: 251 EKIGWKIQKEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTK 263
           E++GW+IQK +E+  QQ C+E+GVKR VLKVWMHNNKH LG K
Sbjct: 236 ERVGWRIQKHDEAAVQQFCDEVGVKRHVLKVWMHNNKHTLGKK 277

[Close]

BLAST of CmoCh06G000070 vs. ExPASy TrEMBL
Match: A0A6J1G0F8 (zinc-finger homeodomain protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111449538 PE=4 SV=1)

HSP 1 Score: 569.3 bits (1466), Expect = 8.7e-159
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MEQTTEHPPIPIPLNARYGGHHHHDPSATCNHIIAAASAVNGGNPLPPFHMEIDLHRNNN 60
           MEQTTEHPPIPIPLNARYGGHHHHDPSATCNHIIAAASAVNGGNPLPPFHMEIDLHRNNN
Sbjct: 1   MEQTTEHPPIPIPLNARYGGHHHHDPSATCNHIIAAASAVNGGNPLPPFHMEIDLHRNNN 60

Query: 61  NNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRK 120
           NNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRK
Sbjct: 61  NNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRK 120

Query: 121 EIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQPHHMIMPYNMLGGG 180
           EIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQPHHMIMPYNMLGGG
Sbjct: 121 EIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQPHHMIMPYNMLGGG 180

Query: 181 GEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKIGWKIQKEEESVAQQLCEE 240
           GEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKIGWKIQKEEESVAQQLCEE
Sbjct: 181 GEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKIGWKIQKEEESVAQQLCEE 240

Query: 241 IGVKRRVLKVWMHNNKHNLGTKETTSPSSSHSPTPLD 278
           IGVKRRVLKVWMHNNKHNLGTKETTSPSSSHSPTPLD
Sbjct: 241 IGVKRRVLKVWMHNNKHNLGTKETTSPSSSHSPTPLD 277

[Close]

BLAST of CmoCh06G000070 vs. ExPASy TrEMBL
Match: A0A6J1I8M3 (zinc-finger homeodomain protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470175 PE=4 SV=1)

HSP 1 Score: 528.9 bits (1361), Expect = 1.3e-146
Identity = 262/279 (93.91%), Postives = 265/279 (94.98%), Query Frame = 0


Query: 1   MEQTTEHPPIPIPLNARYGGHHHHDPSATCNHIIAAASAVNGGNPLPPFHMEIDLHRNNN 60
           MEQTT+HPPIPIPLNARYGGHHHHDPSATCNHIIAA SAVNGGNPLPPFHMEIDLHR  N
Sbjct: 7   MEQTTQHPPIPIPLNARYGGHHHHDPSATCNHIIAATSAVNGGNPLPPFHMEIDLHR--N 66

Query: 61  NNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRK 120
           NNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRK
Sbjct: 67  NNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRK 126

Query: 121 EIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQPHHMIMPYNML--G 180
           EIDHPLLG KLLVGGKNMIAMP+TTTFAYPTAAGA FLSSRAMT QPHHMIM YNML  G
Sbjct: 127 EIDHPLLGHKLLVGGKNMIAMPKTTTFAYPTAAGAGFLSSRAMTVQPHHMIMSYNMLGGG 186

Query: 181 GGGEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKIGWKIQKEEESVAQQLC 240
           GGGEEQEEAAGVRAYSGQM NKKRFRTKFTGEQKERMLRFAEK+GWKI KEEESV QQLC
Sbjct: 187 GGGEEQEEAAGVRAYSGQMMNKKRFRTKFTGEQKERMLRFAEKVGWKILKEEESVVQQLC 246

Query: 241 EEIGVKRRVLKVWMHNNKHNLGTKETTSPSSSHSPTPLD 278
           EEIGVKRRVLKVWMHNNKHNLGTKETTSP  SHSPTPLD
Sbjct: 247 EEIGVKRRVLKVWMHNNKHNLGTKETTSP--SHSPTPLD 281

[Close]

BLAST of CmoCh06G000070 vs. ExPASy TrEMBL
Match: A0A6J1I6X8 (zinc-finger homeodomain protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470175 PE=4 SV=1)

HSP 1 Score: 528.9 bits (1361), Expect = 1.3e-146
Identity = 262/279 (93.91%), Postives = 265/279 (94.98%), Query Frame = 0


Query: 1   MEQTTEHPPIPIPLNARYGGHHHHDPSATCNHIIAAASAVNGGNPLPPFHMEIDLHRNNN 60
           MEQTT+HPPIPIPLNARYGGHHHHDPSATCNHIIAA SAVNGGNPLPPFHMEIDLHR  N
Sbjct: 8   MEQTTQHPPIPIPLNARYGGHHHHDPSATCNHIIAATSAVNGGNPLPPFHMEIDLHR--N 67

Query: 61  NNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRK 120
           NNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRK
Sbjct: 68  NNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRK 127

Query: 121 EIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQPHHMIMPYNML--G 180
           EIDHPLLG KLLVGGKNMIAMP+TTTFAYPTAAGA FLSSRAMT QPHHMIM YNML  G
Sbjct: 128 EIDHPLLGHKLLVGGKNMIAMPKTTTFAYPTAAGAGFLSSRAMTVQPHHMIMSYNMLGGG 187

Query: 181 GGGEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKIGWKIQKEEESVAQQLC 240
           GGGEEQEEAAGVRAYSGQM NKKRFRTKFTGEQKERMLRFAEK+GWKI KEEESV QQLC
Sbjct: 188 GGGEEQEEAAGVRAYSGQMMNKKRFRTKFTGEQKERMLRFAEKVGWKILKEEESVVQQLC 247

Query: 241 EEIGVKRRVLKVWMHNNKHNLGTKETTSPSSSHSPTPLD 278
           EEIGVKRRVLKVWMHNNKHNLGTKETTSP  SHSPTPLD
Sbjct: 248 EEIGVKRRVLKVWMHNNKHNLGTKETTSP--SHSPTPLD 282

[Close]

BLAST of CmoCh06G000070 vs. ExPASy TrEMBL
Match: A0A345BTG5 (ZFP2 OS=Cucurbita pepo OX=3663 PE=2 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 7.7e-115
Identity = 226/300 (75.33%), Postives = 240/300 (80.00%), Query Frame = 0


Query: 1   MEQTT-EHP-PIPIPLNARYGGH--------HHHDPSATCNHIIAAASAVNGGNPLPPFH 60
           ME TT +HP PIPIPLN+RYGGH        HHHDPSA CNHIIAA  AVNGG+PLP   
Sbjct: 1   MELTTQDHPIPIPIPLNSRYGGHDLDHDHVIHHHDPSAACNHIIAA--AVNGGSPLPSSQ 60

Query: 61  MEIDLHRNNNNNSNNN----KKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEAL 120
           ME++LH N+NNN+NNN    KK VKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEAL
Sbjct: 61  MEVELHHNHNNNNNNNNTNTKKQVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEAL 120

Query: 121 TCSACNCHRNFHRKEID--------HPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFL 180
           TCSACNCHRNFHRKEI+        HP LGRKLLVGGKNMIA PE   FAYP+ AG AF+
Sbjct: 121 TCSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAPPEAAAFAYPSVAGPAFI 180

Query: 181 SSRAMTAQPHHMIMPYNMLGGGG--EEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERML 240
           SSR   AQPHHMIM YNMLGGGG   E EE    RAYSG M NKKRFRTKFT EQKE+ML
Sbjct: 181 SSR---AQPHHMIMSYNMLGGGGGQSESEEHEEARAYSGPMMNKKRFRTKFTAEQKEKML 240

Query: 241 RFAEKIGWKIQKEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTKETTSPSSSHSPTPL 277
           RFAEK+GWKIQK+EESV QQ CEEIGVKRRVLKVWMHNNKHNLG K+T SP   HSPTPL
Sbjct: 241 RFAEKVGWKIQKQEESVVQQFCEEIGVKRRVLKVWMHNNKHNLGKKDTISP--PHSPTPL 293

[Close]

BLAST of CmoCh06G000070 vs. ExPASy TrEMBL
Match: A0A6J1F3N8 (zinc-finger homeodomain protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111439781 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.3e-114
Identity = 225/299 (75.25%), Postives = 241/299 (80.60%), Query Frame = 0


Query: 1   MEQTT-EHP-PIPIPLNARYGGH--------HHHDPSATCNHIIAAASAVNGGNPLPPFH 60
           ME TT +HP PIPIPLN+RYGGH        HHHDPSA CNHIIAA  AVNGG+PLP   
Sbjct: 1   MELTTQDHPIPIPIPLNSRYGGHDHDHDHVIHHHDPSAACNHIIAA--AVNGGSPLPSSQ 60

Query: 61  MEIDLHRNNNNNSNNN---KKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALT 120
           ME++LH N+NN++NNN   KK VKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALT
Sbjct: 61  MEVELHHNHNNSNNNNNNTKKQVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALT 120

Query: 121 CSACNCHRNFHRKEID--------HPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLS 180
           CSACNCHRNFHRKEI+        HP LGRKLLVGGKNMIA PE   FAYP+AAG AF+S
Sbjct: 121 CSACNCHRNFHRKEIEGEPYDWLHHPRLGRKLLVGGKNMIAPPEAAAFAYPSAAGPAFIS 180

Query: 181 SRAMTAQPHHMIMPYNMLGGGG--EEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLR 240
           SR   AQPHHMIM YNMLGGGG   E EE    RAYSG M NKKRFRTKFT EQKE+MLR
Sbjct: 181 SR---AQPHHMIMSYNMLGGGGGQSESEEHEEARAYSGPMMNKKRFRTKFTAEQKEKMLR 240

Query: 241 FAEKIGWKIQKEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTKETTSPSSSHSPTPL 277
           FAEK+GWK+QK+EESV QQ CEEIGVKRRVLKVWMHNNKHNLG K+T SP   HSPTPL
Sbjct: 241 FAEKVGWKLQKQEESVVQQFCEEIGVKRRVLKVWMHNNKHNLGKKDTISP--PHSPTPL 292

[Close]

BLAST of CmoCh06G000070 vs. TAIR 10
Match: AT1G14440.1 (homeobox protein 31 )

HSP 1 Score: 218.0 bits (554), Expect = 9.5e-57
Identity = 134/291 (46.05%), Postives = 165/291 (56.70%), Query Frame = 0


Query: 6   EHPPIPIPLNARYGGH-------HHHDPSATCNHIIAAASAVNGGNPL---PPFHMEIDL 65
           E   +PIPLN  +GG        HHHD     +H   +A   +  N     PP  +  + 
Sbjct: 7   EDHDMPIPLNTTFGGGGSHGHMIHHHD-----HHAANSAPPTHNNNNTTQPPPMPLHGNG 66

Query: 66  HRNNNNNSNNNKKH------------VKYKECLKNHAASMGGNATDGCGEFMPSGEEGSI 125
           H NN ++ ++   H            +KYKECLKNHAA+MGGNATDGCGEFMPSGE+GSI
Sbjct: 67  HGNNYDHHHHQDPHHVGYNAIIKKPMIKYKECLKNHAAAMGGNATDGCGEFMPSGEDGSI 126

Query: 126 EALTCSACNCHRNFHRKEIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAM 185
           EALTCSACNCHRNFHRKE++  L             A   +    +P          +  
Sbjct: 127 EALTCSACNCHRNFHRKEVEGEL------------AATAMSPYHQHPPHRKLMLNHQKIR 186

Query: 186 TAQPHHMIMP-----YNMLGGGGEEQE--EAAGVRAYSGQMTN-----KKRFRTKFTGEQ 245
           +A PH MIMP     Y  +    E ++  E  GV   S  + N     KKRFRTKFT EQ
Sbjct: 187 SAMPHQMIMPIGVSNYRYMHNNSESEDFMEEDGVTTASRSLPNLPYNQKKRFRTKFTPEQ 246

Query: 246 KERMLRFAEKIGWKIQKEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTK 263
           KE+ML FAEK+GWKIQ++E+ V Q+ CEEIGVKRRVLKVWMHNNK +   K
Sbjct: 247 KEKMLSFAEKVGWKIQRQEDCVVQRFCEEIGVKRRVLKVWMHNNKIHFSKK 280

[Close]

BLAST of CmoCh06G000070 vs. TAIR 10
Match: AT1G14440.2 (homeobox protein 31 )

HSP 1 Score: 218.0 bits (554), Expect = 9.5e-57
Identity = 134/291 (46.05%), Postives = 165/291 (56.70%), Query Frame = 0


Query: 6   EHPPIPIPLNARYGGH-------HHHDPSATCNHIIAAASAVNGGNPL---PPFHMEIDL 65
           E   +PIPLN  +GG        HHHD     +H   +A   +  N     PP  +  + 
Sbjct: 7   EDHDMPIPLNTTFGGGGSHGHMIHHHD-----HHAANSAPPTHNNNNTTQPPPMPLHGNG 66

Query: 66  HRNNNNNSNNNKKH------------VKYKECLKNHAASMGGNATDGCGEFMPSGEEGSI 125
           H NN ++ ++   H            +KYKECLKNHAA+MGGNATDGCGEFMPSGE+GSI
Sbjct: 67  HGNNYDHHHHQDPHHVGYNAIIKKPMIKYKECLKNHAAAMGGNATDGCGEFMPSGEDGSI 126

Query: 126 EALTCSACNCHRNFHRKEIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAM 185
           EALTCSACNCHRNFHRKE++  L             A   +    +P          +  
Sbjct: 127 EALTCSACNCHRNFHRKEVEGEL------------AATAMSPYHQHPPHRKLMLNHQKIR 186

Query: 186 TAQPHHMIMP-----YNMLGGGGEEQE--EAAGVRAYSGQMTN-----KKRFRTKFTGEQ 245
           +A PH MIMP     Y  +    E ++  E  GV   S  + N     KKRFRTKFT EQ
Sbjct: 187 SAMPHQMIMPIGVSNYRYMHNNSESEDFMEEDGVTTASRSLPNLPYNQKKRFRTKFTPEQ 246

Query: 246 KERMLRFAEKIGWKIQKEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTK 263
           KE+ML FAEK+GWKIQ++E+ V Q+ CEEIGVKRRVLKVWMHNNK +   K
Sbjct: 247 KEKMLSFAEKVGWKIQRQEDCVVQRFCEEIGVKRRVLKVWMHNNKIHFSKK 280

[Close]

BLAST of CmoCh06G000070 vs. TAIR 10
Match: AT2G02540.1 (homeobox protein 21 )

HSP 1 Score: 206.8 bits (525), Expect = 2.2e-53
Identity = 125/286 (43.71%), Postives = 154/286 (53.85%), Query Frame = 0


Query: 11  PIPLNARYG---------GHHHHDPSA-------TCNHIIAAASAVN-GGNPLPPFHMEI 70
           PIP+N  YG          HHHH  SA       T N ++ ++++   G N     H  +
Sbjct: 9   PIPINTSYGNSGGGHGNMNHHHHANSAPSSLNITTSNPLLVSSNSNGLGKNHDHSHHHHV 68

Query: 71  DLHRNNNNNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNC 130
             +    N        +KYKECLKNHAA+MGGNA DGCGEFMPSGEEGSIEALTCS CNC
Sbjct: 69  GYNIMVTNIKKEKPVVIKYKECLKNHAATMGGNAIDGCGEFMPSGEEGSIEALTCSVCNC 128

Query: 131 HRNFHRKEIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQ-PHHMIM 190
           HRNFHR+E +          G +     P       P          + + +  P  MIM
Sbjct: 129 HRNFHRRETE----------GEEKTFFSPYLNHHQPPPQQRKLMFHHKMIKSPLPQQMIM 188

Query: 191 PYNMLGGGGEEQEEAAGVRAYSGQMT----------------NKKRFRTKFTGEQKERML 250
           P  +   G   + E        G +T                 KKRFRTKFT EQKE+M+
Sbjct: 189 PIGVTTAGSNSESEDLMEEEGGGSLTFRQPPPPPSPYSYGHNQKKRFRTKFTQEQKEKMI 248

Query: 251 RFAEKIGWKIQKEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTK 263
            FAE++GWKIQ++EESV QQLC+EIG++RRVLKVWMHNNK NL  K
Sbjct: 249 SFAERVGWKIQRQEESVVQQLCQEIGIRRRVLKVWMHNNKQNLSKK 284

[Close]

BLAST of CmoCh06G000070 vs. TAIR 10
Match: AT1G75240.1 (homeobox protein 33 )

HSP 1 Score: 172.9 bits (437), Expect = 3.5e-43
Identity = 106/248 (42.74%), Postives = 143/248 (57.66%), Query Frame = 0


Query: 67  KKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDHPL 126
           K  V+Y+ECLKNHAAS+GG+  DGCGEFMPSGEEG+IEAL C+AC+CHRNFHRKE+D   
Sbjct: 71  KPTVRYRECLKNHAASVGGSVHDGCGEFMPSGEEGTIEALRCAACDCHRNFHRKEMDG-- 130

Query: 127 LGRKLLVGGKNMIAMPETTTFAYPTAAGAA---------FLSSRAMTAQP------HH-- 186
                 VG  ++I+      + +    G            L+   +   P      HH  
Sbjct: 131 ------VGSSDLISHHRHHHYHHNQYGGGGGRRPPPPNMMLNPLMLPPPPNYQPIHHHKY 190

Query: 187 ---------MIMPYNML---GGGGEE----------QEEAAGVRAYSGQM-----TNKKR 246
                    M+ P ++    GGGG E          Q    G  A +GQM     ++KKR
Sbjct: 191 GMSPPGGGGMVTPMSVAYGGGGGGAESSSEDLNLYGQSSGEGAGAAAGQMAFSMSSSKKR 250

Query: 247 FRTKFTGEQKERMLRFAEKIGWKIQKEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTK 271
           FRTKFT +QKERM+ FAEK+GW++ K++E   ++ C EIGVKR+V KVWMHNNK+N   K
Sbjct: 251 FRTKFTTDQKERMMDFAEKLGWRMNKQDEEELKRFCGEIGVKRQVFKVWMHNNKNN--AK 308

[Close]

BLAST of CmoCh06G000070 vs. TAIR 10
Match: AT4G24660.1 (homeobox protein 22 )

HSP 1 Score: 166.0 bits (419), Expect = 4.3e-41
Identity = 92/197 (46.70%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 70  VKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDHPLLGR 129
           ++Y+ECLKNHA ++GG+A DGC EFMPSGE+G+++AL C+AC CHRNFHRKE +      
Sbjct: 47  IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETES----- 106

Query: 130 KLLVGGKNMIAMPETTTFAYP----TAAGAAFLSSRAMTAQPHHMIMPYNMLGGGGEEQE 189
              +GG+   A    T +  P       G   L+S A          PY      G+E++
Sbjct: 107 ---IGGR---AHRVPTYYNRPPQPHQPPGYLHLTSPA---------APYRPPAASGDEED 166

Query: 190 EAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKIGWKIQKEEESVAQQLCEEIGVKR 249
            +    + SG  T  KRFRTKFT EQKE+ML FAE++GW+IQK ++   +Q C E GV+R
Sbjct: 167 TSN--PSSSGGTT--KRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRR 219

Query: 250 RVLKVWMHNNKHNLGTK 263
           +VLK+WMHNNK++LG K
Sbjct: 227 QVLKIWMHNNKNSLGKK 219

The following BLAST results are available for this feature:

BLAST of CmoCh06G000070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9S0	1.3e-55	46.05	Zinc-finger homeodomain protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZHD4 PE=1 S...	[more]
O64722	3.1e-52	43.71	Zinc-finger homeodomain protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZHD3 PE=1 S...	[more]
Q53N87	1.3e-50	47.95	Zinc-finger homeodomain protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=ZH...	[more]
Q2QW44	9.0e-44	42.55	Zinc-finger homeodomain protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ZH...	[more]
A2Z259	2.2e-42	43.95	Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=ZHD1...	[more]

BLAST of CmoCh06G000070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G0F8	8.7e-159	100.00	zinc-finger homeodomain protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1I8M3	1.3e-146	93.91	zinc-finger homeodomain protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1I6X8	1.3e-146	93.91	zinc-finger homeodomain protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A345BTG5	7.7e-115	75.33	ZFP2 OS=Cucurbita pepo OX=3663 PE=2 SV=1	[more]
A0A6J1F3N8	1.3e-114	75.25	zinc-finger homeodomain protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of CmoCh06G000070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14440.1	9.5e-57	46.05	homeobox protein 31	[more]
AT1G14440.2	9.5e-57	46.05	homeobox protein 31	[more]
AT2G02540.1	2.2e-53	43.71	homeobox protein 21	[more]
AT1G75240.1	3.5e-43	42.74	homeobox protein 33	[more]
AT4G24660.1	4.3e-41	46.70	homeobox protein 22	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006455	Homeodomain, ZF-HD class	TIGRFAM	TIGR01565	TIGR01565	coord: 200..256 e-value: 5.3E-25 score: 85.1
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PFAM	PF04770	ZF-HD_dimer	coord: 70..122 e-value: 2.6E-29 score: 101.4
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	TIGRFAM	TIGR01566	TIGR01566	coord: 71..122 e-value: 6.0E-32 score: 107.8
IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	PROSITE	PS51523	ZF_HD_DIMER	coord: 72..121 score: 27.400723
None	No IPR available	GENE3D	1.10.10.60		coord: 186..261 e-value: 1.4E-31 score: 110.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR31948	ZINC-FINGER HOMEODOMAIN PROTEIN 2	coord: 49..262
None	No IPR available	PANTHER	PTHR31948:SF61	ZINC-FINGER HOMEODOMAIN PROTEIN 4	coord: 49..262
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 198..262 score: 8.794472
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 193..259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000070.1	CmoCh06G000070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0003677	DNA binding