CmoCh05G012520 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G012520
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	VQ domain-containing protein
Location	Cmo_Chr05: 9722390 .. 9722779 (+)
RNA-Seq Expression	CmoCh05G012520
Synteny	CmoCh05G012520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGTGTGGAGAGAATGAATGGAAGGACCAAAAGCAGAGTCAAAATCCCACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGATCAAAGCAAGCAATGCACATGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCACCTCCAATTCTCCCACTCGCCGGAGCAACCACAAACCACCGCCCCACGCCGCCCAAACTCCATCCACTTCAACGTTGCATGCAAATCCTCAAATGGAAGCCTTGAAGTTGTCGGACAACATGTCGTCGCTCCTCGAGTTTGATGATGAAGCTTGTTTTGTAACACTTGATAATGTTCTCACCAACAACTTCATGGGATTTCAAGCTTCTTGCTTGTTTCAATAG

mRNA sequence

ATGGGGAAGTGTGGAGAGAATGAATGGAAGGACCAAAAGCAGAGTCAAAATCCCACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGATCAAAGCAAGCAATGCACATGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCACCTCCAATTCTCCCACTCGCCGGAGCAACCACAAACCACCGCCCCACGCCGCCCAAACTCCATCCACTTCAACGTTGCATGCAAATCCTCAAATGGAAGCCTTGAAGTTGTCGGACAACATGTCGTCGCTCCTCGAGTTTGATGATGAAGCTTGTTTTGTAACACTTGATAATGTTCTCACCAACAACTTCATGGGATTTCAAGCTTCTTGCTTGTTTCAATAG

Coding sequence (CDS)

ATGGGGAAGTGTGGAGAGAATGAATGGAAGGACCAAAAGCAGAGTCAAAATCCCACAAAAGTTCAAAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGATCAAAGCAAGCAATGCACATGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCACCTCCAATTCTCCCACTCGCCGGAGCAACCACAAACCACCGCCCCACGCCGCCCAAACTCCATCCACTTCAACGTTGCATGCAAATCCTCAAATGGAAGCCTTGAAGTTGTCGGACAACATGTCGTCGCTCCTCGAGTTTGATGATGAAGCTTGTTTTGTAACACTTGATAATGTTCTCACCAACAACTTCATGGGATTTCAAGCTTCTTGCTTGTTTCAATAG

Protein sequence

MGKCGENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSNSPTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVTLDNVLTNNFMGFQASCLFQ

Homology

[Close]

BLAST of CmoCh05G012520 vs. ExPASy TrEMBL
Match: A0A0A0LIA7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.5e-32
Identity = 86/139 (61.87%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 1   MGKCGENEW------KDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTG 60
           MGKCGEN++      + Q Q+QNPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FTSNSPTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSD--NMSSLLEFDDEACFVTL- 120
           F SN+PTRR N K     A+TPS        +ME LK SD  +M SLL+FD + CF T  
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 -DNVLTNNFMGFQASCLFQ 130
            +N+L NN M FQ+SC FQ
Sbjct: 121 NNNILPNNIMEFQSSCFFQ 139

[Close]

BLAST of CmoCh05G012520 vs. ExPASy TrEMBL
Match: A0A5A7V7M1 (VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00880 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 9.7e-12
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 35  MMIKASNAHEFRAIVQQLTGFTSNS-PTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLS 94
           MMIKAS+A EFRAIVQQLTGF SNS PTRR N K     A+TPS S  HA+ +ME LK S
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPS-SMFHADREMEVLKFS 60

Query: 95  -DNMSSLLEFDDEACFV 110
            D+M+SLL+FDD+ C +
Sbjct: 61  DDHMASLLQFDDQGCLL 76

[Close]

BLAST of CmoCh05G012520 vs. ExPASy TrEMBL
Match: A0A6J1A533 (uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC110414990 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 54/123 (43.90%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 14  QSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSNSPTRRSNHKP---PP 73
           +S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG   NS     ++ P   P 
Sbjct: 30  KSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTG--RNSDVGEPSNVPTTLPE 89

Query: 74  HAAQTPSTSTLHANPQMEALK-----LSDNMSSLLEFDDEACFVTLDNVLTNNFMGFQAS 129
            A Q  S   + + P     K       D+MSS LEFD+      L   +  N  GFQ+ 
Sbjct: 90  EANQVHSPFHVDSPPAKVDDKSLLDTFQDDMSS-LEFDEG----FLWRAVPENLFGFQSP 145

[Close]

BLAST of CmoCh05G012520 vs. ExPASy TrEMBL
Match: A0A7N2L612 (VQ domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-08
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 11 DQKQSQNP---TKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSNSPTRRSNHK 70
          +Q + QNP   TKV+R+P+K+KYISSPM++KA NA EFRAIVQ+LTG       + S  +
Sbjct: 14 EQPKRQNPSPTTKVKREPMKIKYISSPMLVKARNASEFRAIVQELTG-------QHSEDR 73

Query: 71 PPPHAAQTPSTSTLHANPQMEALK 92
            PH + T  T+  HA PQ++ +K
Sbjct: 74 SDPHQSYTMITN--HAEPQIKMVK 88

[Close]

BLAST of CmoCh05G012520 vs. ExPASy TrEMBL
Match: A0A7N2L6S4 (VQ domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-08
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 11 DQKQSQNP---TKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSNSPTRRSNHK 70
          +Q + QNP   TKV+R+P+K+KYISSPM++KA NA EFRAIVQ+LTG       + S  +
Sbjct: 14 EQPKRQNPSPTTKVKREPMKIKYISSPMLVKARNASEFRAIVQELTG-------QHSEDR 73

Query: 71 PPPHAAQTPSTSTLHANPQMEALK 92
            PH + T  T+  HA PQ++ +K
Sbjct: 74 SDPHQSYTMITN--HAQPQIKMVK 88

[Close]

BLAST of CmoCh05G012520 vs. NCBI nr
Match: KAG6599333.1 (hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255.8 bits (652), Expect = 2.0e-64
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MGKCGENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSNSP 60
           MGKCGENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTS+SP
Sbjct: 1   MGKCGENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHSP 60

Query: 61  TRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVTLDNVLTNNFM 120
           TRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVTLDNVLTNNFM
Sbjct: 61  TRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVTLDNVLTNNFM 120

Query: 121 GFQASCLFQ 130
           GFQASCLFQ
Sbjct: 121 GFQASCLFQ 129

[Close]

BLAST of CmoCh05G012520 vs. NCBI nr
Match: KGN60779.1 (hypothetical protein Csa_019238 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-31
Identity = 86/139 (61.87%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 1   MGKCGENEW------KDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTG 60
           MGKCGEN++      + Q Q+QNPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FTSNSPTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSD--NMSSLLEFDDEACFVTL- 120
           F SN+PTRR N K     A+TPS        +ME LK SD  +M SLL+FD + CF T  
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 -DNVLTNNFMGFQASCLFQ 130
            +N+L NN M FQ+SC FQ
Sbjct: 121 NNNILPNNIMEFQSSCFFQ 139

[Close]

BLAST of CmoCh05G012520 vs. NCBI nr
Match: KAA0063578.1 (hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-11
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 0


Query: 35  MMIKASNAHEFRAIVQQLTGFTSNS-PTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLS 94
           MMIKAS+A EFRAIVQQLTGF SNS PTRR N K     A+TPS S  HA+ +ME LK S
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPS-SMFHADREMEVLKFS 60

Query: 95  -DNMSSLLEFDDEACFV 110
            D+M+SLL+FDD+ C +
Sbjct: 61  DDHMASLLQFDDQGCLL 76

[Close]

BLAST of CmoCh05G012520 vs. NCBI nr
Match: XP_021282108.1 (uncharacterized protein LOC110414990 [Herrania umbratica])

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-08
Identity = 54/123 (43.90%), Postives = 70/123 (56.91%), Query Frame = 0


Query: 14  QSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSNSPTRRSNHKP---PP 73
           +S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG   NS     ++ P   P 
Sbjct: 30  KSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTG--RNSDVGEPSNVPTTLPE 89

Query: 74  HAAQTPSTSTLHANPQMEALK-----LSDNMSSLLEFDDEACFVTLDNVLTNNFMGFQAS 129
            A Q  S   + + P     K       D+MSS LEFD+      L   +  N  GFQ+ 
Sbjct: 90  EANQVHSPFHVDSPPAKVDDKSLLDTFQDDMSS-LEFDEG----FLWRAVPENLFGFQSP 145

[Close]

BLAST of CmoCh05G012520 vs. NCBI nr
Match: KAF3969568.1 (hypothetical protein CMV_006648 [Castanea mollissima])

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-07
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 11 DQKQSQNP---TKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSNSPTRRSNHK 70
          +Q + QNP   TKV+R+P+K+KYISSPM++KA NA EFRAIVQ+LTG       + S  +
Sbjct: 14 EQPKRQNPSPTTKVKREPMKIKYISSPMLVKARNASEFRAIVQELTG-------QHSEDR 73

Query: 71 PPPHAAQTPSTSTLHANPQMEALK 92
            PH + T  T+  HA PQ++ ++
Sbjct: 74 SDPHQSYTMITN--HAEPQIKMVE 88

The following BLAST results are available for this feature:

BLAST of CmoCh05G012520 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh05G012520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIA7	6.5e-32	61.87	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=...	[more]
A0A5A7V7M1	9.7e-12	63.64	VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A6J1A533	1.3e-08	43.90	uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A7N2L612	2.9e-08	48.81	VQ domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2L6S4	2.9e-08	48.81	VQ domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CmoCh05G012520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599333.1	2.0e-64	99.22	hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN60779.1	1.3e-31	61.87	hypothetical protein Csa_019238 [Cucumis sativus]	[more]
KAA0063578.1	2.0e-11	63.64	hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa]	[more]
XP_021282108.1	2.7e-08	43.90	uncharacterized protein LOC110414990 [Herrania umbratica]	[more]
KAF3969568.1	1.8e-07	47.62	hypothetical protein CMV_006648 [Castanea mollissima]	[more]

BLAST of CmoCh05G012520 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 31..58 e-value: 6.1E-10 score: 38.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..84
None	No IPR available	PANTHER	PTHR33624:SF17	VQ MOTIF PROTEIN	coord: 5..125
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 5..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G012520.1	CmoCh05G012520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity