CmoCh05G012360 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G012360
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	histone H1-like
Location	Cmo_Chr05: 9639902 .. 9641256 (+)
RNA-Seq Expression	CmoCh05G012360
Synteny	CmoCh05G012360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTAAAATTGATTCCTCTTTCTCTCGCTCTTTAGCTAACGTTTCGAGTTCAAGCTATTTATCGATTCCAATAATGTCTTCCGCCGCTGATCCTGTTGCCTCCTCCGATGCTCCCGCCACCGTGGCTGCGGTGGCGCAGCCAGTGGAGAACGATTCGAAGTCGAAGAAAGCTGCGGCTTCTAAAGCTTCGAAGGCTAAGAAACCATCTGGTGCGAAGAGGACCAGATCTTCGCCGACTCATCCTCCTTTCTTTGAGGTATGAGAAATTGATCTCTGTGTTGATCGGTAATGTTTGTTTATTCTATTTCTACGTTCTGATCTGATCGAATTTTGAAATTGTTCTACAGATGATTAGTGAAGCGATTGTGTCGCTGAAGGAGAGGACCGGCTCGAGTCAGTACGCCATTACGAAATTCAGCGAAGAGAAGCACAAAAAATTGCCGTCCAATTTCAGGAAGCTCTTGCTCGTTCATCTGAAGAAGCTAGTCGCCGCTGATAAACTCGTTAAGGTCAAGAACTCCTACAAACTTCCATCAGCGCGCTCGAAAGCAGCAGCAGCGCCAGTTGTCGCCAAGAAGCCAGCGAGCTCTAAACTCAAGGCGGCTGTGAGCGTAAAGAAGGCCGCCGTCGCTAAACCGAAGGCTAAAACTGCTGTGAAACCTAAGCCAAAGGCCGTTGCGAAGCCAAAGTCAGCCGCTAAATCGAAGGTCGTCGCGAAACCAAAGGCCGTCGCTCCAGCCAAGCGTAAGGCGGCAGAAAAGGTTAAGAAGGTCGCTCCGAAGCCTAAGCCAGCTGCAAAGCCCGCTAAAGTTGCGAAAACACTGTCACGAACTTCGCCAGGAAAGAAAGCTGCACCGGCGGCGAAGGCGAAGAAGGTAGCGGCGAAGAAGCCAAAGACTGTAAAGTCTCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGAATTGTTAGGGTTTTTGATTAAATTCTAGGGTTTGTTTGTTACTTACTACTAGTTCGTAGCGATGTAAATTAGGAACATGAGATGCAATCGTTGCTATACACTATTTTTATTGAAATTTCCAGTTTGATAAATTCAAGGGTTTATCAAATCAATCTTCCGATCTGTTCTCCAAATACAGTGATTATCTCTCTTCTTCCATACTTGTTTACCTTGGGATTCTGATTGGTTTCTTGTAGAGATGAGCGTTAAAGCTTCGAAGGTTAGCTTCAATGGCGGATTTCCCGTATTTTGAAGCGTTTGTTCTTCTGTGTAACGCCGTTTTGATATCTGGATGGCTCACGTGCGTCGCACGCGATTACAATCCACGTGTATCGCATTCAATTACAAGCCACCGAAATTTTAG

mRNA sequence

TCTCTCTCTAAAATTGATTCCTCTTTCTCTCGCTCTTTAGCTAACGTTTCGAGTTCAAGCTATTTATCGATTCCAATAATGTCTTCCGCCGCTGATCCTGTTGCCTCCTCCGATGCTCCCGCCACCGTGGCTGCGGTGGCGCAGCCAGTGGAGAACGATTCGAAGTCGAAGAAAGCTGCGGCTTCTAAAGCTTCGAAGGCTAAGAAACCATCTGGTGCGAAGAGGACCAGATCTTCGCCGACTCATCCTCCTTTCTTTGAGATGATTAGTGAAGCGATTGTGTCGCTGAAGGAGAGGACCGGCTCGAGTCAGTACGCCATTACGAAATTCAGCGAAGAGAAGCACAAAAAATTGCCGTCCAATTTCAGGAAGCTCTTGCTCGTTCATCTGAAGAAGCTAGTCGCCGCTGATAAACTCGTTAAGGTCAAGAACTCCTACAAACTTCCATCAGCGCGCTCGAAAGCAGCAGCAGCGCCAGTTGTCGCCAAGAAGCCAGCGAGCTCTAAACTCAAGGCGGCTGTGAGCGTAAAGAAGGCCGCCGTCGCTAAACCGAAGGCTAAAACTGCTGTGAAACCTAAGCCAAAGGCCGTTGCGAAGCCAAAGTCAGCCGCTAAATCGAAGGTCGTCGCGAAACCAAAGGCCGTCGCTCCAGCCAAGCGTAAGGCGGCAGAAAAGGTTAAGAAGGTCGCTCCGAAGCCTAAGCCAGCTGCAAAGCCCGCTAAAGTTGCGAAAACACTGTCACGAACTTCGCCAGGAAAGAAAGCTGCACCGGCGGCGAAGGCGAAGAAGGTAGCGGCGAAGAAGCCAAAGACTGTAAAGTCTCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGAATTGTTAGGGTTTTTGATTAAATTCTAGGGTTTGTTTGTTACTTACTACTAGTTCGTAGCGATGTAAATTAGGAACATGAGATGCAATCGTTGCTATACACTATTTTTATTGAAATTTCCAGTTTGATAAATTCAAGGGTTTATCAAATCAATCTTCCGATCTGTTCTCCAAATACAGTGATTATCTCTCTTCTTCCATACTTGTTTACCTTGGGATTCTGATTGGTTTCTTGTAGAGATGAGCGTTAAAGCTTCGAAGGTTAGCTTCAATGGCGGATTTCCCGTATTTTGAAGCGTTTGTTCTTCTGTGTAACGCCGTTTTGATATCTGGATGGCTCACGTGCGTCGCACGCGATTACAATCCACGTGTATCGCATTCAATTACAAGCCACCGAAATTTTAG

Coding sequence (CDS)

ATGTCTTCCGCCGCTGATCCTGTTGCCTCCTCCGATGCTCCCGCCACCGTGGCTGCGGTGGCGCAGCCAGTGGAGAACGATTCGAAGTCGAAGAAAGCTGCGGCTTCTAAAGCTTCGAAGGCTAAGAAACCATCTGGTGCGAAGAGGACCAGATCTTCGCCGACTCATCCTCCTTTCTTTGAGATGATTAGTGAAGCGATTGTGTCGCTGAAGGAGAGGACCGGCTCGAGTCAGTACGCCATTACGAAATTCAGCGAAGAGAAGCACAAAAAATTGCCGTCCAATTTCAGGAAGCTCTTGCTCGTTCATCTGAAGAAGCTAGTCGCCGCTGATAAACTCGTTAAGGTCAAGAACTCCTACAAACTTCCATCAGCGCGCTCGAAAGCAGCAGCAGCGCCAGTTGTCGCCAAGAAGCCAGCGAGCTCTAAACTCAAGGCGGCTGTGAGCGTAAAGAAGGCCGCCGTCGCTAAACCGAAGGCTAAAACTGCTGTGAAACCTAAGCCAAAGGCCGTTGCGAAGCCAAAGTCAGCCGCTAAATCGAAGGTCGTCGCGAAACCAAAGGCCGTCGCTCCAGCCAAGCGTAAGGCGGCAGAAAAGGTTAAGAAGGTCGCTCCGAAGCCTAAGCCAGCTGCAAAGCCCGCTAAAGTTGCGAAAACACTGTCACGAACTTCGCCAGGAAAGAAAGCTGCACCGGCGGCGAAGGCGAAGAAGGTAGCGGCGAAGAAGCCAAAGACTGTAAAGTCTCCGGCGAGGAAAGTCCAGGCAAGGAAAGTCAAGAAATGA

Protein sequence

MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK

Homology

[Close]

BLAST of CmoCh05G012360 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.5e-40
Identity = 147/280 (52.50%), Postives = 171/280 (61.07%), Query Frame = 0


Query: 8   VASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFFEMISEAI 67
           V    AP TV   A P      +K   A K +KAKKP+  ++  ++PTHPP+FEMI +AI
Sbjct: 13  VEEQAAPETVKDEANP-----PAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAI 72

Query: 68  VSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARS 127
           V+LKERTGSSQ+AITKF EEK K LPSNF+KLLL  LKK VA++KLVKVKNSYKLPS   
Sbjct: 73  VTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYKLPSGSK 132

Query: 128 KAAAAPVVAKKPASS--------------KLKAAVSVKKAAVAKP--KAKTAVKPKPKAV 187
            AAAA    KKPA++              K K A   K AA AKP  KAK A K KP A 
Sbjct: 133 PAAAAVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAK 192

Query: 188 AKPKSAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKP--------AKVAKTLSRT 247
           AKP + AK    AKPKA A AK KAA K K    K K A KP        AKVAKT +RT
Sbjct: 193 AKPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPAKTKAAVKPNLKAKTTTAKVAKTATRT 252

Query: 248 SPGKKAAP-AAKAKKVAAKK--PKTVKSPARKVQARKVKK 261
           +P +KAAP A  AKK   KK   K VKSPA+K   ++ +K
Sbjct: 253 TPSRKAAPKATPAKKEPVKKAPAKNVKSPAKKATPKRGRK 287

[Close]

BLAST of CmoCh05G012360 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.7e-36
Identity = 140/248 (56.45%), Postives = 155/248 (62.50%), Query Frame = 0


Query: 11  SDAPATVAAVAQPVENDSK-SKKAAASKASKAKKP-SGAKRTRSSPT--HPPFFEMISEA 70
           +D P +   V +  E  SK   KAAA K  K KK    AK+ +S  T  HP FFEMIS+A
Sbjct: 2   ADTPVSAPVVPEVTERKSKRGTKAAAVKVPKEKKKVIAAKKPKSKGTSSHPSFFEMISDA 61

Query: 71  IVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSAR 130
           I +LKERTGSSQYAI KF E+KHK+LPSNFRKLLL HLKKLVA+ KLVKVKNS+KLPSAR
Sbjct: 62  ISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFKLPSAR 121

Query: 131 SKAAAAPVVAKKPASSKLKAAVSVKKAAV-AKPKAKTAVKPKPKAVAKPKSAAKSKVVAK 190
             AA AP +AKKP   K K A   K A + AKPKAK  V  K KA    K+ AK    AK
Sbjct: 122 --AAPAPALAKKPTIPKPKVAAKPKTAKIGAKPKAKAKVAAKTKATT--KTVAKKIPAAK 181

Query: 191 PKAVAPAKRKAAEKVKKVAPKPKP-AAKPAKVAKTLSRTSPGKKAAPAAKAKKVAAKKPK 250
           PKA             K A KPK  AAKPAKVAKT +  SPGKK       K V  KK K
Sbjct: 182 PKA-------------KTAGKPKTVAAKPAKVAKTAAVASPGKK-------KAVPVKKVK 225

Query: 251 TVKSPARK 253
           TVKSPA K
Sbjct: 242 TVKSPAGK 225

[Close]

BLAST of CmoCh05G012360 vs. ExPASy Swiss-Prot
Match: P26569 (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.5e-32
Identity = 140/268 (52.24%), Postives = 168/268 (62.69%), Query Frame = 0


Query: 8   VASSDAPATV-AAVAQPVENDSKSKKAAASKASKAK-KPSGAKRTRSSPTHPPFFEMISE 67
           V S  A  TV +   +P     KSKK   +KA+K   K +   + +++ +HP + EMI +
Sbjct: 12  VDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKD 71

Query: 68  AIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSA 127
           AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LVA++KLVKVK S+K+PSA
Sbjct: 72  AIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSA 131

Query: 128 RSKAA---AAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKSKV 187
           RS A    AAPV  K    +K K  V+   AAVA  KAK A K   K  A  K  AK+KV
Sbjct: 132 RSAATPKPAAPVKKKATVVAKPKGKVA---AAVAPAKAKAAAKGTKKPAA--KVVAKAKV 191

Query: 188 VAKPKA-VAPAKRK-----AAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKK-AAPAAK- 247
            AKPKA V  AK K     A  K K VA KPK   +PAK ++T +RTSPGKK AAPA K 
Sbjct: 192 TAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKV 251

Query: 248 --AKKVAAKKPKTVKSPARKVQARKVKK 261
              KK  AK  K VKSPA++   RK KK
Sbjct: 252 AVTKKAPAKSVK-VKSPAKRASTRKAKK 273

[Close]

BLAST of CmoCh05G012360 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-31
Identity = 132/256 (51.56%), Postives = 152/256 (59.38%), Query Frame = 0


Query: 11  SDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSL 70
           ++ PA +   A     D+ +  AA + A+KAKK +  K+ R+SPTH P+ EM+SEAI SL
Sbjct: 6   TETPAPLVDAAPEAPADAPAAPAADANAAKAKKATAPKK-RASPTHLPYAEMVSEAITSL 65

Query: 71  KERTGSSQYAITKFSEEKHK-KLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSKA 130
           KERTGSS YAI KF E+KHK KLP NFRKLL V LKKLVA  KL KVKNSYKL SA    
Sbjct: 66  KERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLSSATKPN 125

Query: 131 AAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKSKVVAKPKAV 190
                  KKP +       + K  A AKPKAKT  K KP    KPK AAK K V KPK  
Sbjct: 126 PKPKAAPKKPKTG------AKKPKAAAKPKAKTPAKAKP--ATKPKPAAKPKAVVKPKTP 185

Query: 191 APAKRKAAEKV--KKVAPKPKPAAKP---AKVAKTLSRTSPGKKAAPAAKAKKVAAKKPK 250
           A  K K A K   K    KPKP AK    AK AKT ++ +PGKK APA KA    +KK  
Sbjct: 186 AKPKAKPAAKAKPKTAGAKPKPLAKKAGRAKAAKTSAKDTPGKK-APAKKA--APSKKAA 245

Query: 251 TVKSPARKVQARKVKK 261
           T   P RK  +RK KK
Sbjct: 246 T---PVRKAPSRKAKK 246

[Close]

BLAST of CmoCh05G012360 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.7e-31
Identity = 126/261 (48.28%), Postives = 159/261 (60.92%), Query Frame = 0


Query: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60
           + +  +P+ +   P T+     P + + K++     KA K  KP  A + R+  +HP + 
Sbjct: 10  VETVPEPIVTE--PTTITEPEVPEKEEPKAEVEKTKKA-KGSKPKKASKPRNPASHPTYE 69

Query: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120
           EMI +AIVSLKE+ GSSQYAI KF EEK K+LP+NF+KLLL +LKK VA+ KL+KVK S+
Sbjct: 70  EMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSF 129

Query: 121 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKS 180
           KL    S AA  P VAK  A +  KA  SVK    AKPKAK  VKPK  + AK  +A   
Sbjct: 130 KL----SAAAKKPAVAKPKAKTAAKAK-SVKAKPAAKPKAKAVVKPKVASKAKAVAAKPK 189

Query: 181 KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAK--AKKV 240
           K  AKPK VA   +  A K K V  KPK   KPAKVAKT  +T+PGKK A   K  AKKV
Sbjct: 190 KAAAKPKTVAAKTKPTAAKPKAVV-KPKSKVKPAKVAKTSVKTTPGKKVAAVKKVAAKKV 249

Query: 241 AAK--KPKTVKSPARKVQARK 258
             K  K K+VKSP +KV  ++
Sbjct: 250 PVKSVKAKSVKSPVKKVSVKR 261

[Close]

BLAST of CmoCh05G012360 vs. ExPASy TrEMBL
Match: A0A6J1G2W2 (histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.8e-113
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60
           MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120
           EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKS 180
           KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKS
Sbjct: 121 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKS 180

Query: 181 KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA 240
           KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA
Sbjct: 181 KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA 240

Query: 241 KKPKTVKSPARKVQARKVKK 261
           KKPKTVKSPARKVQARKVKK
Sbjct: 241 KKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of CmoCh05G012360 vs. ExPASy TrEMBL
Match: A0A6J1KEC3 (histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 5.4e-110
Identity = 253/260 (97.31%), Postives = 255/260 (98.08%), Query Frame = 0


Query: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60
           MSSAADPVASSDAPATVA VA PVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF
Sbjct: 1   MSSAADPVASSDAPATVAVVAPPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120
           EMISEAIVSLKERTGSSQYAITKFSEEKHK+LPSNFRKLLLVHLKKLVAADKLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKS 180
           KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPK VAKPK+AAKS
Sbjct: 121 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVAKPKAAAKS 180

Query: 181 KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA 240
           KVV KPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSR SPGKKAAPAAKAKKVAA
Sbjct: 181 KVVGKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRASPGKKAAPAAKAKKVAA 240

Query: 241 KKPKTVKSPARKVQARKVKK 261
           KKPKTVKSPARKVQARKVKK
Sbjct: 241 KKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of CmoCh05G012360 vs. ExPASy TrEMBL
Match: A0A5D3D4H1 (Histone H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001600 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 7.3e-91
Identity = 227/267 (85.02%), Postives = 234/267 (87.64%), Query Frame = 0


Query: 1   MSSAADPVASSDAPATV-AAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPF 60
           MSSAADPV SSDAPA   AAVAQP ENDSKSKKAAASKASKAKKPSGAK+ RSSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  FEMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNS 120
            +MISEAIVSLKERTGSSQYAITKF+EEKHK+LPSNFRKLLLVHLKKLVAADKLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARS----KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVA--K 180
           YKLPSARS     AAAAPV  KKP SSKLKA  S+KK AVAKPKAKTA KPKPKAVA  K
Sbjct: 121 YKLPSARSIQAKAAAAAPVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKPKPKAVAKPK 180

Query: 181 PKSAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAA 240
           PK+  KSK VAKPK    AK KAAEKVKKVAPKPK  AK  KVAKTLSRTSPGK+AAPAA
Sbjct: 181 PKTVTKSKTVAKPKTA--AKTKAAEKVKKVAPKPKAGAKATKVAKTLSRTSPGKRAAPAA 240

Query: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 261
           KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of CmoCh05G012360 vs. ExPASy TrEMBL
Match: A0A1S3C278 (histone H1-like OS=Cucumis melo OX=3656 GN=LOC103496189 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 6.2e-90
Identity = 226/267 (84.64%), Postives = 233/267 (87.27%), Query Frame = 0


Query: 1   MSSAADPVASSDAPATV-AAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPF 60
           MSSAADPV SSDAPA   AAVAQP ENDSKSKKAAASKASKAKKPSGAK+ RSSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  FEMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNS 120
            +MISEAIVSLKERTGSSQYAITKF+EEKHK+LPSNFRKLLLVHLKKLVAADKLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARS----KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVA--K 180
           YKLPSARS     AAAAPV  KKP SSKLKA  S+KK AVAKPKAKTA K KPKAVA  K
Sbjct: 121 YKLPSARSIQAKAAAAAPVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKSKPKAVAKPK 180

Query: 181 PKSAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAA 240
           PK+  KSK VAKPK    AK KAAEKVKKVAPKPK  AK  KVAKTLSRTSPGK+AAPAA
Sbjct: 181 PKTVTKSKTVAKPKTA--AKTKAAEKVKKVAPKPKAGAKATKVAKTLSRTSPGKRAAPAA 240

Query: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 261
           KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of CmoCh05G012360 vs. ExPASy TrEMBL
Match: A0A6J1CNP7 (histone H1-like OS=Momordica charantia OX=3673 GN=LOC111012938 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 1.1e-86
Identity = 221/264 (83.71%), Postives = 234/264 (88.64%), Query Frame = 0


Query: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60
           M+SAADP+  SDAPA  AA    V ND+K KKAA+SKASKAKKPSGAKR +SSPTHPPFF
Sbjct: 1   MASAADPIVPSDAPAADAAEVLTVANDAKPKKAASSKASKAKKPSGAKRPKSSPTHPPFF 60

Query: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120
           +MISEAIVSLKERTGSSQYAITKFSEEKHK+LPSNFRKLLLVHLKKLVAADKLVKVKNSY
Sbjct: 61  QMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARS--KAAAAPVVAKKPASSKLKAAVSV-KKAAVAKPKAKTAVKPKPKAVAKPKSA 180
           KLPSARS    AAAPV AKKPASSKLKAA SV KKAAV KPKAKTAVKPKPKAV KPK+ 
Sbjct: 121 KLPSARSIQAKAAAPVAAKKPASSKLKAAASVKKKAAVVKPKAKTAVKPKPKAVVKPKTI 180

Query: 181 AKSKVVAKPK-AVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAK 240
           +KSKVVAKPK A A AK KAA KV K A K KPAA+PAKVAKTL++TSPGK+AAPAAKAK
Sbjct: 181 SKSKVVAKPKAAAAAAKPKAAAKV-KAAAKAKPAARPAKVAKTLTQTSPGKRAAPAAKAK 240

Query: 241 KVAAKKPKTVKSPARKVQARKVKK 261
           KVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 KVAAKKPKTVKSPARKVQARKVKK 263

[Close]

BLAST of CmoCh05G012360 vs. NCBI nr
Match: XP_022946127.1 (histone H1-like [Cucurbita moschata] >KAG7030316.1 Histone H1.2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 418.7 bits (1075), Expect = 3.7e-113
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60
           MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120
           EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKS 180
           KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKS
Sbjct: 121 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKS 180

Query: 181 KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA 240
           KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA
Sbjct: 181 KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA 240

Query: 241 KKPKTVKSPARKVQARKVKK 261
           KKPKTVKSPARKVQARKVKK
Sbjct: 241 KKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of CmoCh05G012360 vs. NCBI nr
Match: KAG6599320.1 (Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 416.0 bits (1068), Expect = 2.4e-112
Identity = 258/260 (99.23%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60
           MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120
           EMISEAIVSLKERTGSSQYAITKFSEEKHK+LPSNFRKLLLVHLKKLVAADKLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKS 180
           KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPK+AAKS
Sbjct: 121 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKAAAKS 180

Query: 181 KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA 240
           KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA
Sbjct: 181 KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA 240

Query: 241 KKPKTVKSPARKVQARKVKK 261
           KKPKTVKSPARKVQARKVKK
Sbjct: 241 KKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of CmoCh05G012360 vs. NCBI nr
Match: XP_023521173.1 (histone H1-like [Cucurbita pepo subsp. pepo] >XP_023521452.1 histone H1-like [Cucurbita pepo subsp. pepo] >XP_023547297.1 histone H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 411.4 bits (1056), Expect = 5.9e-111
Identity = 255/260 (98.08%), Postives = 257/260 (98.85%), Query Frame = 0


Query: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60
           MSSAADPVASSDAPATVA VAQP ENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF
Sbjct: 1   MSSAADPVASSDAPATVAVVAQPAENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120
           EMISEAIVSLKERTGSSQYAITKFSEEKHK+LPSNFRKLLLVHLKKLVAADKLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKS 180
           KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPK VAKPK+AAKS
Sbjct: 121 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVAKPKAAAKS 180

Query: 181 KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA 240
           KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA
Sbjct: 181 KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA 240

Query: 241 KKPKTVKSPARKVQARKVKK 261
           KKPKTVKSPARKVQARKVKK
Sbjct: 241 KKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of CmoCh05G012360 vs. NCBI nr
Match: XP_022999095.1 (histone H1-like [Cucurbita maxima])

HSP 1 Score: 407.1 bits (1045), Expect = 1.1e-109
Identity = 253/260 (97.31%), Postives = 255/260 (98.08%), Query Frame = 0


Query: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60
           MSSAADPVASSDAPATVA VA PVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF
Sbjct: 1   MSSAADPVASSDAPATVAVVAPPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120
           EMISEAIVSLKERTGSSQYAITKFSEEKHK+LPSNFRKLLLVHLKKLVAADKLVKVKNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKS 180
           KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPK VAKPK+AAKS
Sbjct: 121 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKVVAKPKAAAKS 180

Query: 181 KVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAA 240
           KVV KPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSR SPGKKAAPAAKAKKVAA
Sbjct: 181 KVVGKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRASPGKKAAPAAKAKKVAA 240

Query: 241 KKPKTVKSPARKVQARKVKK 261
           KKPKTVKSPARKVQARKVKK
Sbjct: 241 KKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of CmoCh05G012360 vs. NCBI nr
Match: KAA0063593.1 (histone H1-like [Cucumis melo var. makuwa] >TYK18434.1 histone H1-like [Cucumis melo var. makuwa])

HSP 1 Score: 343.6 bits (880), Expect = 1.5e-90
Identity = 227/267 (85.02%), Postives = 234/267 (87.64%), Query Frame = 0


Query: 1   MSSAADPVASSDAPATV-AAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPF 60
           MSSAADPV SSDAPA   AAVAQP ENDSKSKKAAASKASKAKKPSGAK+ RSSPTHPPF
Sbjct: 1   MSSAADPVVSSDAPAAADAAVAQPAENDSKSKKAAASKASKAKKPSGAKKARSSPTHPPF 60

Query: 61  FEMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNS 120
            +MISEAIVSLKERTGSSQYAITKF+EEKHK+LPSNFRKLLLVHLKKLVAADKLVKVKNS
Sbjct: 61  LQMISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNS 120

Query: 121 YKLPSARS----KAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVA--K 180
           YKLPSARS     AAAAPV  KKP SSKLKA  S+KK AVAKPKAKTA KPKPKAVA  K
Sbjct: 121 YKLPSARSIQAKAAAAAPVATKKPVSSKLKAVASIKKPAVAKPKAKTAAKPKPKAVAKPK 180

Query: 181 PKSAAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAA 240
           PK+  KSK VAKPK    AK KAAEKVKKVAPKPK  AK  KVAKTLSRTSPGK+AAPAA
Sbjct: 181 PKTVTKSKTVAKPKTA--AKTKAAEKVKKVAPKPKAGAKATKVAKTLSRTSPGKRAAPAA 240

Query: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 261
           KAKKVAAKKPKTVKSPARKVQARKVKK
Sbjct: 241 KAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of CmoCh05G012360 vs. TAIR 10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-33
Identity = 140/268 (52.24%), Postives = 168/268 (62.69%), Query Frame = 0


Query: 8   VASSDAPATV-AAVAQPVENDSKSKKAAASKASKAK-KPSGAKRTRSSPTHPPFFEMISE 67
           V S  A  TV +   +P     KSKK   +KA+K   K +   + +++ +HP + EMI +
Sbjct: 12  VDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKD 71

Query: 68  AIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSA 127
           AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LVA++KLVKVK S+K+PSA
Sbjct: 72  AIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSA 131

Query: 128 RSKAA---AAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKSKV 187
           RS A    AAPV  K    +K K  V+   AAVA  KAK A K   K  A  K  AK+KV
Sbjct: 132 RSAATPKPAAPVKKKATVVAKPKGKVA---AAVAPAKAKAAAKGTKKPAA--KVVAKAKV 191

Query: 188 VAKPKA-VAPAKRK-----AAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKK-AAPAAK- 247
            AKPKA V  AK K     A  K K VA KPK   +PAK ++T +RTSPGKK AAPA K 
Sbjct: 192 TAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKV 251

Query: 248 --AKKVAAKKPKTVKSPARKVQARKVKK 261
              KK  AK  K VKSPA++   RK KK
Sbjct: 252 AVTKKAPAKSVK-VKSPAKRASTRKAKK 273

[Close]

BLAST of CmoCh05G012360 vs. TAIR 10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 136.3 bits (342), Expect = 3.4e-32
Identity = 136/264 (51.52%), Postives = 161/264 (60.98%), Query Frame = 0


Query: 10  SSDAPATVAAV-AQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFFEMISEAIV 69
           ++DAP T AAV  +P     K+K     K  K    +  KRT SS  HP + EMI +AIV
Sbjct: 17  AADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSS--HPTYEEMIKDAIV 76

Query: 70  SLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSK 129
           +LKERTGSSQYAI KF EEK K+LP  FRKLLL++LK+LVA+ KLVKVK S+KLPSA +K
Sbjct: 77  TLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKLPSASAK 136

Query: 130 AAAAPVVAKKPASSKLK-AAVSVKKAAVAKPKAKTAVKPKPKAVAKPKSAAKSKVVAKPK 189
           A++    A+K A +K K A V+V K   AK K   A K K     KPK+AA  KV AK K
Sbjct: 137 ASSPKAAAEKSAPAKKKPATVAVTK---AKRKVAAASKAKKTIAVKPKTAAAKKVTAKAK 196

Query: 190 A-VAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAK-------AKKVA 249
           A   P    AA K K V  KPK  A+PAK AKT   TSP KKA  A K        KK  
Sbjct: 197 AKPVPRATAAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATKKKTP 256

Query: 250 AK---KPKTVKSPARKVQARKVKK 261
            K   KPKTVKSPA++  +R VKK
Sbjct: 257 VKKVVKPKTVKSPAKRASSR-VKK 274

[Close]

BLAST of CmoCh05G012360 vs. TAIR 10
Match: AT2G30620.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 105.5 bits (262), Expect = 6.4e-23
Identity = 102/202 (50.50%), Postives = 126/202 (62.38%), Query Frame = 0


Query: 8   VASSDAPATV-AAVAQPVENDSKSKKAAASKASKAK-KPSGAKRTRSSPTHPPFFEMISE 67
           V S  A  TV +   +P     KSKK   +KA+K   K +   + +++ +HP + EMI +
Sbjct: 12  VDSGAADTTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKD 71

Query: 68  AIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSA 127
           AIV+LKERTGSSQYAI KF EEKHK LP  FRKLLLV+LK+LVA++KLVKVK S+K+PSA
Sbjct: 72  AIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSA 131

Query: 128 RSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKA-KTAVKPKP-KAVAKP--KSAAKSK 187
           RS  AA P    KPA     A V  K   VAKPKA +T+ +  P K VA P  K A   K
Sbjct: 132 RS--AATP----KPA-----APVKKKATVVAKPKASRTSTRTSPGKKVAAPAKKVAVTKK 191

Query: 188 VVAKP-KAVAPAKRKAAEKVKK 203
             AK  K  +PAKR +  K KK
Sbjct: 192 APAKSVKVKSPAKRASTRKAKK 202

[Close]

BLAST of CmoCh05G012360 vs. TAIR 10
Match: AT2G18050.1 (histone H1-3 )

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-09
Identity = 63/164 (38.41%), Postives = 87/164 (53.05%), Query Frame = 0


Query: 37  KASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYAITKFSEEKHKK-LPSN 96
           K   AKKP   K T    THPP+F+MI EA++ LKE+ GSS YAI K  EEKHK  LP +
Sbjct: 9   KTPAAKKPRKPKTT----THPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPES 68

Query: 97  FRKLLLVHLKKLVAADKLVKVKNSYKLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAV 156
           FRK L + LK  VA  KLVK++ SYKL            +  +    K K  +  +   +
Sbjct: 69  FRKTLSLQLKNSVAKGKLVKIRASYKLSDTTK-------MITRQQDKKNKKNMKQEDKEI 128

Query: 157 AKPKAKTAVKPKPK-AVAKPKSAAKSKVVAKPKAV--APAKRKA 197
            K    ++ +PK   +V K +   K K   +PK++  +  K+KA
Sbjct: 129 TKRTRSSSTRPKKTVSVNKQEKKRKVKKARQPKSIKSSVGKKKA 161

[Close]

BLAST of CmoCh05G012360 vs. TAIR 10
Match: AT2G18050.2 (histone H1-3 )

HSP 1 Score: 45.4 bits (106), Expect = 7.9e-05
Identity = 51/139 (36.69%), Postives = 73/139 (52.52%), Query Frame = 0


Query: 62  MISEAIVSLKERTGSSQYAITKFSEEKHKK-LPSNFRKLLLVHLKKLVAADKLVKVKNSY 121
           MI EA++ LKE+ GSS YAI K  EEKHK  LP +FRK L + LK  VA  KLVK++ SY
Sbjct: 1   MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASY 60

Query: 122 KLPSARSKAAAAPVVAKKPASSKLKAAVSVKKAAVAKPKAKTAVKPKPK-AVAKPKSAAK 181
           KL            +  +    K K  +  +   + K    ++ +PK   +V K +   K
Sbjct: 61  KLSDTTK-------MITRQQDKKNKKNMKQEDKEITKRTRSSSTRPKKTVSVNKQEKKRK 120

Query: 182 SKVVAKPKAV--APAKRKA 197
            K   +PK++  +  K+KA
Sbjct: 121 VKKARQPKSIKSSVGKKKA 132

The following BLAST results are available for this feature:

BLAST of CmoCh05G012360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P37218	1.5e-40	52.50	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
Q9M5W4	1.7e-36	56.45	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
P26569	2.5e-32	52.24	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
P23444	1.3e-31	51.56	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
P08283	3.7e-31	48.28	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of CmoCh05G012360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2W2	1.8e-113	100.00	histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1	[more]
A0A6J1KEC3	5.4e-110	97.31	histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1	[more]
A0A5D3D4H1	7.3e-91	85.02	Histone H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G0016...	[more]
A0A1S3C278	6.2e-90	84.64	histone H1-like OS=Cucumis melo OX=3656 GN=LOC103496189 PE=3 SV=1	[more]
A0A6J1CNP7	1.1e-86	83.71	histone H1-like OS=Momordica charantia OX=3673 GN=LOC111012938 PE=3 SV=1	[more]

BLAST of CmoCh05G012360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946127.1	3.7e-113	100.00	histone H1-like [Cucurbita moschata] >KAG7030316.1 Histone H1.2 [Cucurbita argyr...	[more]
KAG6599320.1	2.4e-112	99.23	Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023521173.1	5.9e-111	98.08	histone H1-like [Cucurbita pepo subsp. pepo] >XP_023521452.1 histone H1-like [Cu...	[more]
XP_022999095.1	1.1e-109	97.31	histone H1-like [Cucurbita maxima]	[more]
KAA0063593.1	1.5e-90	85.02	histone H1-like [Cucumis melo var. makuwa] >TYK18434.1 histone H1-like [Cucumis ...	[more]

BLAST of CmoCh05G012360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30620.1	1.8e-33	52.24	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	3.4e-32	51.52	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.2	6.4e-23	50.50	winged-helix DNA-binding transcription factor family protein	[more]
AT2G18050.1	1.1e-09	38.41	histone H1-3	[more]
AT2G18050.2	7.9e-05	36.69	histone H1-3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 197..216 score: 25.0 coord: 69..86 score: 38.89 coord: 42..63 score: 40.4 coord: 145..159 score: 42.22 coord: 175..192 score: 39.51
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 53..119 e-value: 6.9E-31 score: 118.6
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 56..122 e-value: 1.7E-15 score: 57.1
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 55..124 score: 27.852556
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 53..127 e-value: 9.37715E-13 score: 60.7127
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 50..141 e-value: 4.2E-20 score: 73.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..260
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..260
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 3..260
None	No IPR available	PANTHER	PTHR11467:SF128	SUBFAMILY NOT NAMED	coord: 3..260
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 52..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G012360.1	CmoCh05G012360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008168	methyltransferase activity