CmoCh05G010430 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G010430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Low temperature and salt responsive protein family
Location	Cmo_Chr05: 8438524 .. 8439275 (-)
RNA-Seq Expression	CmoCh05G010430
Synteny	CmoCh05G010430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAACGGATGTGAGATCTGCTGCGAGATTCTCATCGCCATCCTCATTCCTCCTCTAGGAGTTTGCCTAAAGCACGGCTGTTGCACGGTAATCTTACTTCTTCTTCAATCTCTCTGTAATTTCCCCCAATCTGAACTCCTGGTGACCTAAAACAGCCGACTTAACTGCTCTCTGATCTAAATCAGATGACGTCGATCTGGATTAGGTTTTGGTTTTCGGTCTAATTTTGTGTGGAAATGGTATAATTGCAGGTGGAATTTTGTCTGTGTTTGATTTTGACTCTTCTCGGTTACATTCCGGGGATCATCTACGCACTCTACGCCATCGTCTACGTCGATCGCGACCAGTTCTTCGACGAGTACAGGCGTCCGCTCTATTCTCAGGCGTCGGCGGTATAGAAACCGGTTTGAATCTCTTCAACTCTGTGTTTAGCCTTTTTCGAATAAGGTTGTTAAACTTTTGGATTGGATTTCATCTACATAGATTTGTTCAACTTTCTGTTTCTTGATTCGGTTGGATTTAGATTTTGTTGAGACACTGTATGGATGTGTGGTCATGAACTTAGACCTAAGATGTTTGGAATAATTTGGATGGCGATGAATGTTGAAACAAATCGGGACTGATGAAATGTCGGCAATGGCGTTTTGAGGTGCCTTTGCGTAGAAATAAATAGTTGAGGCGTCCTTAAAACCTTCATAATTTTGAAATTGCTTTAAAAAATAAAATAAAATAAGAAATTACAAAAGAAG

mRNA sequence

ATGGCGAACGGATGTGAGATCTGCTGCGAGATTCTCATCGCCATCCTCATTCCTCCTCTAGGAGTTTGCCTAAAGCACGGCTGTTGCACGGTAATCTTACTTCTTCTTCAATCTCTCTGTAATTTCCCCCAATCTGAACTCCTGGTGGAATTTTGTCTGTGTTTGATTTTGACTCTTCTCGGTTACATTCCGGGGATCATCTACGCACTCTACGCCATCGTCTACGTCGATCGCGACCAGTTCTTCGACGAGTACAGGCGTCCGCTCTATTCTCAGGCGTCGGCGGTATAGAAACCGGTTTGAATCTCTTCAACTCTGTGTTTAGCCTTTTTCGAATAAGGTTGTTAAACTTTTGGATTGGATTTCATCTACATAGATTTGTTCAACTTTCTGTTTCTTGATTCGGTTGGATTTAGATTTTGTTGAGACACTGTATGGATGTGTGGTCATGAACTTAGACCTAAGATGTTTGGAATAATTTGGATGGCGATGAATGTTGAAACAAATCGGGACTGATGAAATGTCGGCAATGGCGTTTTGAGGTGCCTTTGCGTAGAAATAAATAGTTGAGGCGTCCTTAAAACCTTCATAATTTTGAAATTGCTTTAAAAAATAAAATAAAATAAGAAATTACAAAAGAAG

Coding sequence (CDS)

ATGGCGAACGGATGTGAGATCTGCTGCGAGATTCTCATCGCCATCCTCATTCCTCCTCTAGGAGTTTGCCTAAAGCACGGCTGTTGCACGGTAATCTTACTTCTTCTTCAATCTCTCTGTAATTTCCCCCAATCTGAACTCCTGGTGGAATTTTGTCTGTGTTTGATTTTGACTCTTCTCGGTTACATTCCGGGGATCATCTACGCACTCTACGCCATCGTCTACGTCGATCGCGACCAGTTCTTCGACGAGTACAGGCGTCCGCTCTATTCTCAGGCGTCGGCGGTATAG

Protein sequence

MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLLGYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV

Homology

[Close]

BLAST of CmoCh05G010430 vs. ExPASy Swiss-Prot
Match: O82232 (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.9e-24
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          MA+ CE+CCEI IAIL+PP+GVCL+HGCCT                  VEF +CLILT L
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCT------------------VEFFICLILTCL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLY 91
          GY+PGIIYA+YAI ++ RD++FDEYRRP+Y
Sbjct: 61 GYLPGIIYAIYAICFLHRDEYFDEYRRPIY 72

[Close]

BLAST of CmoCh05G010430 vs. ExPASy Swiss-Prot
Match: Q9SUI0 (UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.7e-22
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          M + CEI CEI+IAIL+PPLGVC + GCCT                  VEF +CL+LT+L
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCT------------------VEFLICLVLTIL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYS 92
          GY+PGIIYA+Y IV+  R+++FDEYRRP+YS
Sbjct: 61 GYVPGIIYAIYVIVFQHREEYFDEYRRPIYS 73

[Close]

BLAST of CmoCh05G010430 vs. ExPASy Swiss-Prot
Match: Q9M095 (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana OX=3702 GN=At4g30650 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.0e-16
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          MA+  E+ CEILIAIL+PPLGVCLK GCCT                  VEF +CL+LT+L
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCT------------------VEFLICLVLTIL 60

Query: 61 GYIPGIIYALYAIVYVDRD 80
          GYIPGIIYALY IV+ +R+
Sbjct: 61 GYIPGIIYALYVIVFQNRE 61

[Close]

BLAST of CmoCh05G010430 vs. ExPASy Swiss-Prot
Match: Q9LRI7 (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-12
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 1  MANG-CEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTL 60
          MA+G C    EIL+AI++PPLGV L+ GCC+                  +EFC+CL+LT+
Sbjct: 1  MASGRCCTFLEILLAIILPPLGVFLRFGCCS------------------MEFCICLLLTI 60

Query: 61 LGYIPGIIYALYAIVYVDRDQFFDEY 86
          LGY+PGIIYA+Y +V +D DQ+  EY
Sbjct: 61 LGYVPGIIYAVYVLVALDSDQYQREY 68

[Close]

BLAST of CmoCh05G010430 vs. ExPASy Swiss-Prot
Match: A2Y075 (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-07
Identity = 35/70 (50.00%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 4  GCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLLGYI 63
          G   C +ILIAI++PPLGV LK GC                     EF +CL+LT LGYI
Sbjct: 3  GTANCIDILIAIILPPLGVFLKFGCGH-------------------EFWICLLLTFLGYI 53

Query: 64 PGIIYALYAI 74
          PGIIYA+YAI
Sbjct: 63 PGIIYAIYAI 53

[Close]

BLAST of CmoCh05G010430 vs. ExPASy TrEMBL
Match: A0A6J1KI35 (UPF0057 membrane protein At2g24040-like OS=Cucurbita maxima OX=3661 GN=LOC111494032 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.4e-33
Identity = 78/96 (81.25%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          MANGCEICCEILIAILIPPLGVCLKHGCCT                  VEFCLCLILTLL
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCT------------------VEFCLCLILTLL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV 97
          GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV
Sbjct: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV 78

[Close]

BLAST of CmoCh05G010430 vs. ExPASy TrEMBL
Match: A0A6J1G463 (UPF0057 membrane protein At2g24040-like OS=Cucurbita moschata OX=3662 GN=LOC111450578 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.4e-33
Identity = 78/96 (81.25%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          MANGCEICCEILIAILIPPLGVCLKHGCCT                  VEFCLCLILTLL
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCT------------------VEFCLCLILTLL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV 97
          GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV
Sbjct: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV 78

[Close]

BLAST of CmoCh05G010430 vs. ExPASy TrEMBL
Match: A0A6J1DV17 (UPF0057 membrane protein At2g24040-like OS=Momordica charantia OX=3673 GN=LOC111024708 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.3e-31
Identity = 73/96 (76.04%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          MANGCEICCEILIAILIPPLGVCLKHGCCT                  VEFCLCLILTLL
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCT------------------VEFCLCLILTLL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV 97
          GY+PGIIYALYAIV+VDRDQFFDEYRRPLY+  SAV
Sbjct: 61 GYVPGIIYALYAIVFVDRDQFFDEYRRPLYAPVSAV 78

[Close]

BLAST of CmoCh05G010430 vs. ExPASy TrEMBL
Match: A0A5A7UJR3 (UPF0057 membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold323G00760 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.0e-29
Identity = 70/95 (73.68%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          M NGCEICCEILIAILIPPLGVCLK GCCT                  VEFCLCLILTLL
Sbjct: 1  MVNGCEICCEILIAILIPPLGVCLKFGCCT------------------VEFCLCLILTLL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASA 96
          GY+PGIIYA+YAI +VDRDQFFDEYRRPLYS ASA
Sbjct: 61 GYVPGIIYAVYAIAFVDRDQFFDEYRRPLYSSASA 77

[Close]

BLAST of CmoCh05G010430 vs. ExPASy TrEMBL
Match: A0A1S3BTY7 (UPF0057 membrane protein At4g30660 OS=Cucumis melo OX=3656 GN=LOC103493660 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.0e-29
Identity = 70/95 (73.68%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          M NGCEICCEILIAILIPPLGVCLK GCCT                  VEFCLCLILTLL
Sbjct: 1  MVNGCEICCEILIAILIPPLGVCLKFGCCT------------------VEFCLCLILTLL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASA 96
          GY+PGIIYA+YAI +VDRDQFFDEYRRPLYS ASA
Sbjct: 61 GYVPGIIYAVYAIAFVDRDQFFDEYRRPLYSSASA 77

[Close]

BLAST of CmoCh05G010430 vs. NCBI nr
Match: XP_022946545.1 (UPF0057 membrane protein At2g24040-like [Cucurbita moschata] >XP_022999789.1 UPF0057 membrane protein At2g24040-like [Cucurbita maxima] >XP_023523032.1 UPF0057 membrane protein At2g24040-like [Cucurbita pepo subsp. pepo] >XP_023546587.1 UPF0057 membrane protein At2g24040-like [Cucurbita pepo subsp. pepo] >KAG6599143.1 UPF0057 membrane protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030086.1 UPF0057 membrane protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150.2 bits (378), Expect = 9.0e-33
Identity = 78/96 (81.25%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          MANGCEICCEILIAILIPPLGVCLKHGCCT                  VEFCLCLILTLL
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCT------------------VEFCLCLILTLL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV 97
          GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV
Sbjct: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV 78

[Close]

BLAST of CmoCh05G010430 vs. NCBI nr
Match: XP_022158160.1 (UPF0057 membrane protein At2g24040-like [Momordica charantia])

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-30
Identity = 73/96 (76.04%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          MANGCEICCEILIAILIPPLGVCLKHGCCT                  VEFCLCLILTLL
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCT------------------VEFCLCLILTLL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV 97
          GY+PGIIYALYAIV+VDRDQFFDEYRRPLY+  SAV
Sbjct: 61 GYVPGIIYALYAIVFVDRDQFFDEYRRPLYAPVSAV 78

[Close]

BLAST of CmoCh05G010430 vs. NCBI nr
Match: XP_038890692.1 (UPF0057 membrane protein At4g30660-like [Benincasa hispida])

HSP 1 Score: 140.2 bits (352), Expect = 9.3e-30
Identity = 73/96 (76.04%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          MANGCEICCEILIAILIPPLGVCLK GCCT                  VEFCLCLILTLL
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKFGCCT------------------VEFCLCLILTLL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASAV 97
          GYIPGIIYALYAIV+VDRDQFFDEYRRPLY+ AS V
Sbjct: 61 GYIPGIIYALYAIVFVDRDQFFDEYRRPLYAPASTV 78

[Close]

BLAST of CmoCh05G010430 vs. NCBI nr
Match: XP_008452728.1 (PREDICTED: UPF0057 membrane protein At4g30660 [Cucumis melo] >KAA0056112.1 UPF0057 membrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-28
Identity = 70/95 (73.68%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          M NGCEICCEILIAILIPPLGVCLK GCCT                  VEFCLCLILTLL
Sbjct: 1  MVNGCEICCEILIAILIPPLGVCLKFGCCT------------------VEFCLCLILTLL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASA 96
          GY+PGIIYA+YAI +VDRDQFFDEYRRPLYS ASA
Sbjct: 61 GYVPGIIYAVYAIAFVDRDQFFDEYRRPLYSSASA 77

[Close]

BLAST of CmoCh05G010430 vs. NCBI nr
Match: XP_011648896.1 (UPF0057 membrane protein At4g30660 [Cucumis sativus] >KGN61055.1 hypothetical protein Csa_021360 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-28
Identity = 69/95 (72.63%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          M NGCEICCEILIAILIPPLGVCLK GCCT                  VEFCLCLILTLL
Sbjct: 1  MVNGCEICCEILIAILIPPLGVCLKFGCCT------------------VEFCLCLILTLL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYSQASA 96
          GY+PGIIYA+YAI +VDRDQFFDEYRRPLYS  SA
Sbjct: 61 GYVPGIIYAVYAIAFVDRDQFFDEYRRPLYSSVSA 77

[Close]

BLAST of CmoCh05G010430 vs. TAIR 10
Match: AT4G28088.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 129.4 bits (324), Expect = 1.5e-30
Identity = 65/90 (72.22%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          MANGCEICCEI+IAILIPPLGVCL+HGCCT                   EF +CLILTLL
Sbjct: 1  MANGCEICCEIMIAILIPPLGVCLRHGCCT------------------TEFMICLILTLL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLY 91
          GY+PGIIYALYAIVYVDRDQFFDEYRRPL+
Sbjct: 61 GYVPGIIYALYAIVYVDRDQFFDEYRRPLF 72

[Close]

BLAST of CmoCh05G010430 vs. TAIR 10
Match: AT2G24040.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-25
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          MA+ CE+CCEI IAIL+PP+GVCL+HGCCT                  VEF +CLILT L
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCT------------------VEFFICLILTCL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLY 91
          GY+PGIIYA+YAI ++ RD++FDEYRRP+Y
Sbjct: 61 GYLPGIIYAIYAICFLHRDEYFDEYRRPIY 72

[Close]

BLAST of CmoCh05G010430 vs. TAIR 10
Match: AT4G30660.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 104.0 bits (258), Expect = 6.9e-23
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          M + CEI CEI+IAIL+PPLGVC + GCCT                  VEF +CL+LT+L
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCT------------------VEFLICLVLTIL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYS 92
          GY+PGIIYA+Y IV+  R+++FDEYRRP+YS
Sbjct: 61 GYVPGIIYAIYVIVFQHREEYFDEYRRPIYS 73

[Close]

BLAST of CmoCh05G010430 vs. TAIR 10
Match: AT4G30660.2 (Low temperature and salt responsive protein family )

HSP 1 Score: 104.0 bits (258), Expect = 6.9e-23
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          M + CEI CEI+IAIL+PPLGVC + GCCT                  VEF +CL+LT+L
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCT------------------VEFLICLVLTIL 60

Query: 61 GYIPGIIYALYAIVYVDRDQFFDEYRRPLYS 92
          GY+PGIIYA+Y IV+  R+++FDEYRRP+YS
Sbjct: 61 GYVPGIIYAIYVIVFQHREEYFDEYRRPIYS 73

[Close]

BLAST of CmoCh05G010430 vs. TAIR 10
Match: AT4G30650.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 84.3 bits (207), Expect = 5.7e-17
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVILLLLQSLCNFPQSELLVEFCLCLILTLL 60
          MA+  E+ CEILIAIL+PPLGVCLK GCCT                  VEF +CL+LT+L
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCT------------------VEFLICLVLTIL 60

Query: 61 GYIPGIIYALYAIVYVDRD 80
          GYIPGIIYALY IV+ +R+
Sbjct: 61 GYIPGIIYALYVIVFQNRE 61

The following BLAST results are available for this feature:

BLAST of CmoCh05G010430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82232	7.9e-24	58.89	UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 ...	[more]
Q9SUI0	9.7e-22	54.95	UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 ...	[more]
Q9M095	8.0e-16	56.96	UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana OX=3702 GN=At4g30650 ...	[more]
Q9LRI7	1.1e-12	47.67	Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 S...	[more]
A2Y075	1.8e-07	50.00	Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 S...	[more]

BLAST of CmoCh05G010430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KI35	4.4e-33	81.25	UPF0057 membrane protein At2g24040-like OS=Cucurbita maxima OX=3661 GN=LOC111494...	[more]
A0A6J1G463	4.4e-33	81.25	UPF0057 membrane protein At2g24040-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1DV17	5.3e-31	76.04	UPF0057 membrane protein At2g24040-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5A7UJR3	5.0e-29	73.68	UPF0057 membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A1S3BTY7	5.0e-29	73.68	UPF0057 membrane protein At4g30660 OS=Cucumis melo OX=3656 GN=LOC103493660 PE=3 ...	[more]

BLAST of CmoCh05G010430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946545.1	9.0e-33	81.25	UPF0057 membrane protein At2g24040-like [Cucurbita moschata] >XP_022999789.1 UPF...	[more]
XP_022158160.1	1.1e-30	76.04	UPF0057 membrane protein At2g24040-like [Momordica charantia]	[more]
XP_038890692.1	9.3e-30	76.04	UPF0057 membrane protein At4g30660-like [Benincasa hispida]	[more]
XP_008452728.1	1.0e-28	73.68	PREDICTED: UPF0057 membrane protein At4g30660 [Cucumis melo] >KAA0056112.1 UPF00...	[more]
XP_011648896.1	3.0e-28	72.63	UPF0057 membrane protein At4g30660 [Cucumis sativus] >KGN61055.1 hypothetical pr...	[more]

BLAST of CmoCh05G010430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28088.1	1.5e-30	72.22	Low temperature and salt responsive protein family	[more]
AT2G24040.1	5.6e-25	58.89	Low temperature and salt responsive protein family	[more]
AT4G30660.1	6.9e-23	54.95	Low temperature and salt responsive protein family	[more]
AT4G30660.2	6.9e-23	54.95	Low temperature and salt responsive protein family	[more]
AT4G30650.1	5.7e-17	56.96	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 8..43 e-value: 4.5E-5 score: 23.5 coord: 47..74 e-value: 3.1E-7 score: 30.5
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..36
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 42..92
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 12..27
None	No IPR available	PANTHER	PTHR21659:SF93	BNAA03G50460D PROTEIN	coord: 42..92
None	No IPR available	PANTHER	PTHR21659:SF93	BNAA03G50460D PROTEIN	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G010430.1	CmoCh05G010430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane