CmoCh05G008030 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G008030
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRNA-binding protein 42-like
LocationCmo_Chr05: 4715788 .. 4723574 (+)
RNA-Seq ExpressionCmoCh05G008030
SyntenyCmoCh05G008030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGCCAAGCCCTAATTTTGAAGCCATTTCAAGTTCTTACTGCTCTTGGCCATGGCGGGACCTTCCTCGACTCCTTCAGCACCTTCTTCCTCATCAGGTTCCCAATTTACGTATTCAAACGGTTCCTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCGGCACCGGCAGGCCCCCAGTATCCGTCTCCCTATGTCGCTGCTCCAGGTCCTCCAGCAGTTCCGCTCCCCGTCACATCTGTTTATCCGGCTCCTGCTCCCGCTGCCTATACTCTCCCTCAATACCAGCAGGTCGCATAACATGCATACGATTTTAATTTTTACTGCGGAGTTCTGGTTTTGTTCTATTTTTGCTATGGTTTAGGGAAAATTGTTATGGAGCTTGACGTTTCTGATGGATAAGGGAATATTTTTTGGTTCAATTTATGGCTTTAGCATGCTTGTAACATTTCCCCCCCTGTTTTACCTACTATGAACAGGCTCAACAATTGTTTCAAAGGGATGCCCAAACGATAACACCGGAAGCTCTCGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAGGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGAGTGGCCTGAAAGTATGCATTATTTACGTTCTTTAATTTCACGTATTTGCAATCATTGGGCTTGCTGTGATCTCTAGGAATAATTTTAATTGTTATGGGCCTCTGATATCAGCTTGAACCGATGGATGTTTCTTTTAGTTACTACACGTATTACATAGAAACCTCGGCAAATTTCAAGCAAGGACTGGATACTTGGCTTTGGACTTAAAATAATTTCTGTAATGCACCACGAGTGGTTTGGGTTTTCCTTTATGTAATTTTATGAATCAATAAAATAGTTTCTTGTTCCTCTCTGGAGAAAAGTATAACAAAATTAAATACAATAAAACAAAAGATCTTTTTGGCTACATGACTTTGAATATTTCTTTAGGAGGTAATGAGCCTGGAGAAATAAGGTTTTTGCTGTTATAATGGAAATAAGGGAGATAGATGGTTTTCCAAGAAGCCTAAGGAGCCAATGGAAAAGAATAAAGAGGCTGAAACAAAGGTTTGAAGAATTCACCAATAAGATAATTGGTGATGGGAGGGACATCGAATTGCAAAGGTAGCAAGGCTTATGTTTATACCTAGGAAGTATAAACACTCCATTTTTTTTTGCAGAGTCTCGGACATCTATCATACATGGGCATGCTCGAACACACACCTGACATTTGAAAAAGTCTAATTGATAAGTGCTATAGATGTTGGATTTACAAAACTAGAGGTACTTCTAGGATACTTGCAAATATTCACAAATAAGGCTAACTTATCAAATAGATTCCAACCAAGAGCTTAGTTAGAAGATGAAACTCTTGGATCTAACATAGAATCTAGGATGGTTACTCCTAGACGACTCACCCTATAATTAGATTGATTGAAGCTAATCCAAAGAATTGATTGAACTTCAAACACAAAGCAAGATTTGAAAAAACCAGCACCAAGATGGATTTGAGAAACACAAGTTTCTTTGTTTGGTTGCAAAAAAGTCTAACAAATACAAAGTATTACATGCCCTTAAATAAGCCCAAATGGCCGTTCAAGTTCCCAAGAATCAAGTCCTTCAAATACAAATAAATGATAATTGGAGAAAATAAAACCTAGGAAATGAAGCTCAATTGCACAACAATTGAGAAGTCTAAATGTGGAACAAAAAAATGTAGTAATGTTTTAAATTTTCTTCAATATCTATGGTAGGATCCACTTGACTTGATGAGAACGTTTGACAAGTTTTAACATCATAAACTCTCAGGAGGTGCAATTTGGAAAGGCATCTCTTCACAGGTTCTACGTAGTTTTTTTGTCCATCGTGCCATCTTCCAAACTACACTACTTTTGCATGCCATCTTTACTTCATTCACTTTTTGACTTGTTGAAATAACGTTATGAAGAAATCAGGGTTCAACATTCGTTCTCTCCTTGTGCATTAGCTAGTTTTTGAAGATACAATGTAGAAGCCTTTTGATTTTTTTTTTTTTTGCCTTGTTCATTGTAATAGCTCCTTCAGGTACAAGTAATGGATCGAAGGTTGGATTCACATCACCAATTATTCAATATTTTAATTTCTTGATATAGTTCGAAAAAGAAAGTATAACAAAGTACAACATTTGTTGGATTTGAAAGCCCAATACCCACTAGAAAATGAAGGTGCCCACTTAAAAAAAATACCTAAATTTAATATGTCAAAAATAAGAGAGCAATTCCACTGTTTGATCCTATTTTCAAGTTTATTCCATAAACCTTATTGAAACTCAATCGTTTTTGGCTCAGTGTGGGAGACCCCGATTATTAGGGGGGGAAAAATCAACTGTTTTTTGCTCCAGTGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGTGGACTAGTTTCGCAGTCATCATCTCTCTATTTTTTAATGCCATAGGAAGGATTTATTCATGATTTCTTTTGGAGAGGAGTAGCGAAAGAATATGAAAACATTCTAGTAACTTGGAAAAACATCAACCTACTTGCGAGATGGGGGTGGAAATTCATGGAAGAAAATAATGCCCTATGGAAGGATGTAATTGCCAACAATTACTCTGGAGTAATAGATTCCAAAGCCGAATAGCCATGGGCCAAGCAAAGGTCCTTGGAAGGAGGTAATTGCCAACAATTATGGTTGGGTTGTTCCTTTTAGGAATTTGACCGTTGATGAGATTCTTGAGTGGATCAAGCTCTACAGCCTTGTTTATATACAATGACCTTCGAATGTAGAAGATTCTCTCTCTTGGACCCTCAAAAGAGATGGTTGATTTTCGGTTAATTCCTTAACTTTTGAGCTAAGCACTCATCAGGCCCTGTTGATGTTAATCCATCAAAGGTGATTTGGGTGGCTAAAGTCCCTAAGAGGAAGTGAAAGCCTTCATATGGGTCTTTGTCCGAAGGAATTTAAACACAAGGGATGTCTACAAAGAAGACGACTGAATAATCCGTGCCCCCAAATTGGTGCATGATGTGCAGATCAAATGAAGAAAATCGGCATCATCTTTTCTTCCTGTTCTCTTGGGCAAACTCCTTACGGGTTAGATTATTGAATTTTTTGGGGAGCTGGTGTGTCCTGAAAGAAATGATGGGGCCTGTTTTTGCTTATTTTTGGCAGTCCTTTCGAGGATAAAGGTCGTACTTTATGGTTCATGGTGACTTTGTGGAAACTGTGGCATGAGAGGAACTAGAAGGGCTTTGTAGAGAAGACGACTAACCTTTACAAGCTTTGTGACCCCATCAAACTCTTTGCATCCATCTGTGTTCTCTTTCAAAGTCTTTTTGTAATTATGATCTTGTGCATATTTCAGCTGATTGGGAGTCCTTTTTTGTGACCCTTTGCCCTAGTAGGGATAATTCATCTACCTTTTGTACTACTTCCTCCCAATCAATATATTTTTTGTTTCTTATTAAAAAAAAGGAGAAGAAAATACACCCTTATTGGATAATGAATATTATTGGTTGTCAATCACTGTTTCGATGAATTTAATTTTGTTTTGATGTTGACTCTTAGATATTATATTTACTTTTATATTATTAAGAATTTTGAAATATTAGTGGTCATAGGCTTGTGTGTATGCACATAATTACAAAGAAAAAAAAAACTATCATAACCCCAATATATCATGTCCTAGTTTTTTATCATGTTGCCGTGTTAGTCATTTTATTGGTGACATATTTCATGTTTCTTAAATAGTTACTGATCTGCCGTACTCTTGATTCTTATATTTTTCCACCGATTTTGATGGATTTCCTTTTCCTGTTGGCTTTGTAGAAATAATGACTACTATAGAGGAGAAATTGAATTAGTGCATGTAATGTTCCTATGCTGTACTCTCTAACTTTTTAAATTTGTATCTATTACTTTCATGTTCCTATGCTGTACTCTTGATTCTTATATTTTTCCACCGATTTTGATGGATTTCCTTTTCCTGTTGGCTTTGTAGAAATAATGACTACTATAGAGTAGAAATTGAATTAGTGCATGTAATGTTCCTATGCTGTACTCTCTAACTTTTTAAATTTGTATCTATTGCTTTCATCTTTAGCTGGAAGTATCTCTTACTGAGGAAAATTTTCTGTTGTTGCAGATGATTACCGTCTATTTTGTGGAGATCTTGGCAATGAAGTGAATGATGATGTTCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCTAGAGTAAGTTTATTGAGTCCAATATTCTACCTAATTCATTTTTATTTTCAATTTTTGTTCTTGGCATTCTGCATGATGGTTAGTTTCCTTGAAAGTGTTTGGTCCGTTTAAAAGGTCGCAATGCATCTATAGGTATGTCTTGTTTGTACATTTACATGTGATTCTGATTGCATTTGAGGCTTCTGATATGTCCACAGGAATCTGTTCCTTGAATTGTAATATATTTTTTATATTTTTTAAGGTTTAAGTTCTATTTTGGTCGAAAAAGCTTTTATATTATTTTGTTTGGCTTCTAAACTTGTAAATATTCTGTTTTGGTCACTAAGCTATCAACTTTATCCCTGAAACTATGCATAATAAACTAATTTAGTCATTTCTGTTAATTCTTTTTGTGGATCATTTGGAGTTTGCTAACCTTCTTTGTGTAACCCCAAAAACATACCTTGTAGACAGACACTCACCAGATTTAGGAACAAAAGATGTGTCGAATCAAGTTTCTGTTAAATGATTTTTATAAATTAAAGCAAAACTAATGACTGATAAAATATATTTTTTTATGAAAAGCTGACGGACAAAAATAGAATCATCTGGAAGACTAAAATGAAAGAAGTATAATATCTCCAGAAATAAAATAGTATTAAAACCTGTTTTTATGTTTCTTAAAAATTATTTATGAGGTTAAGAATTTTCTTTAAGAAAGATGCGATCATCTGATTGGGAGATATGCAGCTGGAACCTCTTTATGGAGCTTGTATCCCTTAGAATTTACCAAGTTCATAGACTAGCTTGAGTTGTAACATGGTTGGGTCATTTAAACTTGCCAGAGACAGGTTAGCTCTCGAGCTTTTAAAAGTGGTTATTCTTTTCCTTGGTATTTTCACTCTCTTACTGCTTGTGGGAGTATGAGGAAAGTCCCTTAAAATTTTGTGCACGAAACTATCCATGAAATTTTCAACAGAGGGACTTGAAGACTGTGTGAGCTCTTGACTTTTAGTAATGATTGGAGATATTTTTCTTTTGGTATTCACTCACGAATCTTGAAGATTCGCTGTTAAAGTGATCGGCCCTGTGATTTCCCTCCTTTGTGGTCATTGTATAGTCATGCCATTAAACATAGGCTTTACACCCATTTCATCTGGTATTGGGTCTTGTCATGGAAGATTTATTTTATTTGTGTTATTGTTGCTCATGCATATTTTATGGTTGAACTCGTAATTTAATTCTCACCAACATTTGTAGTTTTTGAACCATTGTCAACTTCAAGGACATTGCCCAACTGTTTATAAGGATTTCTATTGCATAATTTTTTGGAAGTGGTTTGGACCAATTGATGCACTTTTATAAGAAACAATCTCAACTTTGTATCTTGAAAAATATACTATTTCATGACTTTGCGGATTGACCTGAAATATTTTGATACTCTATTTATGGTTTATTTTCTACTTACCAATTGATCTATATGCATATAATTTTTGTTTAGGTTGTTCGAGATAAGCGAACTGGTAAGACCAAGGGTTATGGGTTTGTTAGCTTCTCCAATCCTACGGACCTTGCTGCAGCACTTAAGGAAATGAATGGTAATATGCTGATTTCAGTTTTATATGGGTTCTGCAGTTCTTTCATCTCTCTGTTGGACTTGTGCTTCCTGTTCAATTCTCATGACATGTACTGTGTAATATAATAAAACCTTCCTCGTTGGTGGAACGCTATAGGATAACGAGTTTAATTAGGTTGTCATTTAACTTTTTCTTTTTACGAGAAACAAATTTTTTTACTGAAATAATGAAAATGACTAATGCTCAAAAGTTACAGTTCTTTTTTGTTTTACTTCTCTCTCTCAAAAACATTTTGAAGAAAGTTGTAAGAAATTAAAATGTAGGTTTTGAGAAAACAAGTGTTTTTCTGCATTCACAATTTGGTCAGGATTTTGAAGTATTTCTAAAATGTACGATACCGAATTACTTTCTAAAAGAACTATACAAATTAAAGGATAATTTTTAGATAGACCCAATTTTTTGTTCTTATGATCGCCTCCTGTGGAGGAAATTTCCTATGAACTAGACCCATCTGTATGAACTAGCGTGGTCAAGAATCTTATGGTCTAATCCTCAAGCTTATGTGTCTTCTAGGGTGTGTGGTAATGGTTGGGTAGTTTGACATTCTTAAATGCCTTGTGTTCTCTTCAAAATCTCTGAAACTATTCTTATGTGCTTAGACCCTTCTTGATTGCAGGCAAGTATGTCGGAAATAGGCCGATAAAATTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTATGATGCCCTGGAAAGACACAAGGTAAATAACGTTCGGTGTTCGTATGCACCGTTACTTCTTGCTTATTTTTAAAGTTCGACGTTTCAGTTTTTTTGATAAACTAATTTGATGACAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAGAGGTCGTTCACATTCTTGCGTCTTTGTTTACTCCTCGAGTATAATCGTCGATCACTCAAGTGATCGGTACCGGATGTCTAACCAGTGTTTCAGGAATGCCGTGAAGTTAGTATCTGAGTGAGCTTTCTGTTCTCTGCTGCTGCAACTCTTTTTAAATGAAGTGATTGTGCACTGGAGAAGATGTTTACTTGGAAGGAATCGATCTTGTAAAGTGTTGTGCATTCTCCATTCTCTTTGGCTATTTAATGAAGGAATGGAAATCAACAGTCTTTCACTGTTCTTGACCATTGATCTGACATTACATCTTATTTCAAACGACGCTTAAATGTGATTCAGAAAGAAGAACGATTCCCCTTTGTTTGAGCAGAAGAATATAATATCCTCAACGAATTGAAG

mRNA sequence

CTGCCAAGCCCTAATTTTGAAGCCATTTCAAGTTCTTACTGCTCTTGGCCATGGCGGGACCTTCCTCGACTCCTTCAGCACCTTCTTCCTCATCAGGTTCCCAATTTACGTATTCAAACGGTTCCTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCGGCACCGGCAGGCCCCCAGTATCCGTCTCCCTATGTCGCTGCTCCAGGTCCTCCAGCAGTTCCGCTCCCCGTCACATCTGTTTATCCGGCTCCTGCTCCCGCTGCCTATACTCTCCCTCAATACCAGCAGGCTCAACAATTGTTTCAAAGGGATGCCCAAACGATAACACCGGAAGCTCTCGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAGGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGAGATCTTGGCAATGAAGTGAATGATGATGTTCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCTAGAGTTGTTCGAGATAAGCGAACTGGTAAGACCAAGGGTTATGGGTTTGTTAGCTTCTCCAATCCTACGGACCTTGCTGCAGCACTTAAGGAAATGAATGGCAAGTATGTCGGAAATAGGCCGATAAAATTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTATGATGCCCTGGAAAGACACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAGAGGTCGTTCACATTCTTGCGTCTTTGTTTACTCCTCGAGTATAATCGTCGATCACTCAAGTGATCGGTACCGGATGTCTAACCAGTGTTTCAGGAATGCCGTGAAGTTAGTATCTGAGTGAGCTTTCTGTTCTCTGCTGCTGCAACTCTTTTTAAATGAAGTGATTGTGCACTGGAGAAGATGTTTACTTGGAAGGAATCGATCTTGTAAAGTGTTGTGCATTCTCCATTCTCTTTGGCTATTTAATGAAGGAATGGAAATCAACAGTCTTTCACTGTTCTTGACCATTGATCTGACATTACATCTTATTTCAAACGACGCTTAAATGTGATTCAGAAAGAAGAACGATTCCCCTTTGTTTGAGCAGAAGAATATAATATCCTCAACGAATTGAAG

Coding sequence (CDS)

ATGGCGGGACCTTCCTCGACTCCTTCAGCACCTTCTTCCTCATCAGGTTCCCAATTTACGTATTCAAACGGTTCCTACTTTCCTTTACCTTTCCATCTCCAGCAGTCTGCTCCGGCACCGGCAGGCCCCCAGTATCCGTCTCCCTATGTCGCTGCTCCAGGTCCTCCAGCAGTTCCGCTCCCCGTCACATCTGTTTATCCGGCTCCTGCTCCCGCTGCCTATACTCTCCCTCAATACCAGCAGGCTCAACAATTGTTTCAAAGGGATGCCCAAACGATAACACCGGAAGCTCTCGAGAGTGTTAAAGCTGCGCTTGCAAGTAGTGAGATCGAGCATAAAGCAGAAACAAAAAAGAAAGCTATTCCTCGCAAGGCTGCCGGGCAATCTTGGGAGGATCCAACACTTGCTGAGTGGCCTGAAAATGATTACCGTCTATTTTGTGGAGATCTTGGCAATGAAGTGAATGATGATGTTCTCTCTAAAGCATTCTCACGATTTCCTTCATTTAACATGGCTAGAGTTGTTCGAGATAAGCGAACTGGTAAGACCAAGGGTTATGGGTTTGTTAGCTTCTCCAATCCTACGGACCTTGCTGCAGCACTTAAGGAAATGAATGGCAAGTATGTCGGAAATAGGCCGATAAAATTAAGAAAGAGCAATTGGAAGGAGAGGACAGACTATGATGCCCTGGAAAGACACAAGAACCACACTCAAAAGAAATCAAAGCTTCCAAAGAAGAGTATCTTGCACAAGTAG

Protein sequence

MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLPKKSILHK
Homology
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BLAST of CmoCh05G008030 vs. ExPASy Swiss-Prot
Match: Q66KL9 (RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.4e-40
Identity = 101/227 (44.49%), Postives = 130/227 (57.27%), Query Frame = 0 

Query: 38  PAPAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEA 97
           PAP GP  P P    P  P +   V       AP  YT P  ++ ++      + + P  
Sbjct: 173 PAPVGPLPPPPRPVVPSAPKMNPTVIQA----APTVYTAPPVRKPEE------EIVEPPI 232

Query: 98  LESVKAALASSE------------------IEHKAETKKKAIPRK-------AAGQSWED 157
           L   K  L+  E                  +E   E KKK  P K       AAG SWED
Sbjct: 233 LPDEKETLSFEEAVIGPSMPEMEPVQPEVVLEPVQEDKKKTKPEKLKRCIRTAAGTSWED 292

Query: 158 PTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFS 217
            +L EW  +D+R+FCGDLGNEVNDD+L++AFSR+PSF  A+V+RDKRTGKTKGYGFVSF 
Sbjct: 293 QSLLEWESDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFK 352

Query: 218 NPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQK 240
           +P D   A++EMNGKYVG+RPIKLRKS WK+R + D + + +   +K
Sbjct: 353 DPNDYVRAMREMNGKYVGSRPIKLRKSQWKDR-NMDVVRKKQREKKK 388

[Close]
BLAST of CmoCh05G008030 vs. ExPASy Swiss-Prot
Match: Q0P5L0 (RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.4e-40
Identity = 100/207 (48.31%), Postives = 131/207 (63.29%), Query Frame = 0 

Query: 39  APAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAYTLPQYQQAQQLFQ-----RDAQTI 98
           APAGP    P  + P   A+PLP     P P      L    +  +L       R  +  
Sbjct: 241 APAGPAVIGP--SLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPE 300

Query: 99  TPEALESVKAALASSEIEHKAETKK-KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGN 158
            P  L +++     SE + K + +K K   R AAG SWEDP+L EW  +D+R+FCGDLGN
Sbjct: 301 PPPGLMALEVPEPLSEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGN 360

Query: 159 EVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNR 218
           EVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG+R
Sbjct: 361 EVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSR 420

Query: 219 PIKLRKSNWKERTDYDALERHKNHTQK 240
           PIKLRKS WK+R + D + + +   +K
Sbjct: 421 PIKLRKSMWKDR-NLDVVRKKQKEKKK 444

[Close]
BLAST of CmoCh05G008030 vs. ExPASy Swiss-Prot
Match: Q9BTD8 (RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 9.3e-40
Identity = 103/209 (49.28%), Postives = 128/209 (61.24%), Query Frame = 0 

Query: 39  APAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAY-TLPQYQQAQQLFQRDAQTITPEA 98
           APAGP    P  + P   A+PLP     P P       LP  +  + L  R      P  
Sbjct: 273 APAGPAVIGP--SLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP--RPPR 332

Query: 99  LESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDL 158
            E     +A    E   E KKK  P K       AAG SWEDP+L EW  +D+R+FCGDL
Sbjct: 333 PEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDL 392

Query: 159 GNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVG 218
           GNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG
Sbjct: 393 GNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVG 452

Query: 219 NRPIKLRKSNWKERTDYDALERHKNHTQK 240
           +RPIKLRKS WK+R + D + + +   +K
Sbjct: 453 SRPIKLRKSMWKDR-NLDVVRKKQKEKKK 476

[Close]
BLAST of CmoCh05G008030 vs. ExPASy Swiss-Prot
Match: Q91V81 (RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 9.3e-40
Identity = 103/209 (49.28%), Postives = 128/209 (61.24%), Query Frame = 0 

Query: 39  APAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAY-TLPQYQQAQQLFQRDAQTITPEA 98
           APAGP    P  + P   A+PLP     P P       LP  +  + L  R      P  
Sbjct: 271 APAGPAVIGP--SLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP--RPPR 330

Query: 99  LESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDL 158
            E     +A    E   E KKK  P K       AAG SWEDP+L EW  +D+R+FCGDL
Sbjct: 331 PEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDL 390

Query: 159 GNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVG 218
           GNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG
Sbjct: 391 GNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVG 450

Query: 219 NRPIKLRKSNWKERTDYDALERHKNHTQK 240
           +RPIKLRKS WK+R + D + + +   +K
Sbjct: 451 SRPIKLRKSMWKDR-NLDVVRKKQKEKKK 474

[Close]
BLAST of CmoCh05G008030 vs. ExPASy Swiss-Prot
Match: Q6AXT7 (RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 9.3e-40
Identity = 103/209 (49.28%), Postives = 128/209 (61.24%), Query Frame = 0 

Query: 39  APAGPQYPSPYVAAPGPPAVPLPVTSVYPAPAPAAY-TLPQYQQAQQLFQRDAQTITPEA 98
           APAGP    P  + P   A+PLP     P P       LP  +  + L  R      P  
Sbjct: 271 APAGPAVIGP--SLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP--RPPR 330

Query: 99  LESVKAALASSEIEHKAETKKKAIPRK-------AAGQSWEDPTLAEWPENDYRLFCGDL 158
            E     +A    E   E KKK  P K       AAG SWEDP+L EW  +D+R+FCGDL
Sbjct: 331 PEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDL 390

Query: 159 GNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVG 218
           GNEVNDD+L++AFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P+D   A++EMNGKYVG
Sbjct: 391 GNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVG 450

Query: 219 NRPIKLRKSNWKERTDYDALERHKNHTQK 240
           +RPIKLRKS WK+R + D + + +   +K
Sbjct: 451 SRPIKLRKSMWKDR-NLDVVRKKQKEKKK 474

[Close]
BLAST of CmoCh05G008030 vs. ExPASy TrEMBL
Match: A0A6J1ET57 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 1.8e-134
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0 

Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 252
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]
BLAST of CmoCh05G008030 vs. ExPASy TrEMBL
Match: A0A6J1KCL6 (RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111492062 PE=4 SV=1)

HSP 1 Score: 483.4 bits (1243), Expect = 5.7e-133
Identity = 249/251 (99.20%), Postives = 249/251 (99.20%), Query Frame = 0 

Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSS PSAPSSSSGSQFTYSNGSYFPLPFHLQQSA APAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSATAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 252
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]
BLAST of CmoCh05G008030 vs. ExPASy TrEMBL
Match: A0A1S4DU47 (LOW QUALITY PROTEIN: RNA-binding protein 42 OS=Cucumis melo OX=3656 GN=LOC103485881 PE=4 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 5.7e-125
Identity = 238/253 (94.07%), Postives = 240/253 (94.86%), Query Frame = 0 

Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSS PS+ SSSS SQFTYSNGSYFPLPFHLQQSAPAPA PQYPSPYVA PGPP VPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYPSPYVAPPGPPPVPL 60

Query: 61  PVTSVYPAPA--PAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PV  VYPAPA  PA YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 252
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]
BLAST of CmoCh05G008030 vs. ExPASy TrEMBL
Match: A0A0A0LH39 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075290 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 4.8e-124
Identity = 237/253 (93.68%), Postives = 239/253 (94.47%), Query Frame = 0 

Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSS PS+ SSSS SQFTYSNGSYFPLPFHLQQSAPAPA PQY SPYVA PGPP VPL
Sbjct: 1   MAGPSSAPSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYSSPYVAPPGPPPVPL 60

Query: 61  PVTSVYPAPA--PAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PV  VYPAPA  PA YTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVAPVYPAPAPPPAVYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL RHKNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRHKNHTQ 240

Query: 241 KKSKLPKKSILHK 252
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]
BLAST of CmoCh05G008030 vs. ExPASy TrEMBL
Match: A0A6J1FBP0 (RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 4.1e-123
Identity = 235/253 (92.89%), Postives = 239/253 (94.47%), Query Frame = 0 

Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGP S PSA SSSSG+QFTYSNGSYFPLPFHLQQSAPA   PQYP+PYVAAP PPAVPL
Sbjct: 1   MAGPFSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQYPTPYVAAPAPPAVPL 60

Query: 61  PVTSVY--PAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120
           PV SVY  PAPAPAAY LPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK
Sbjct: 61  PVASVYPTPAPAPAAYNLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKK 120

Query: 121 KAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180
           KAIPRKAAGQSWEDPTL EWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK
Sbjct: 121 KAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDK 180

Query: 181 RTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQ 240
           RTGKTKGYGFVSFSNPTDLA ALKEMNGKYVGNRPIKLRKSNWKERTDY+AL R+KNHTQ
Sbjct: 181 RTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKNHTQ 240

Query: 241 KKSKLPKKSILHK 252
           KKSKLPKKSILHK
Sbjct: 241 KKSKLPKKSILHK 253

[Close]
BLAST of CmoCh05G008030 vs. NCBI nr
Match: XP_022929768.1 (RNA-binding protein 42-like [Cucurbita moschata])

HSP 1 Score: 488.4 bits (1256), Expect = 3.7e-134
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0 

Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 252
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]
BLAST of CmoCh05G008030 vs. NCBI nr
Match: XP_023545858.1 (RNA-binding protein 42-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 486.5 bits (1251), Expect = 1.4e-133
Identity = 250/251 (99.60%), Postives = 250/251 (99.60%), Query Frame = 0 

Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSS PSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 252
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]
BLAST of CmoCh05G008030 vs. NCBI nr
Match: KAG7029895.1 (RNA-binding protein 42 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 485.3 bits (1248), Expect = 3.1e-133
Identity = 249/251 (99.20%), Postives = 250/251 (99.60%), Query Frame = 0 

Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSS PSAPSSSSGSQFTYSNGSYFPLPFHLQQ+APAPAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQTAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 252
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]
BLAST of CmoCh05G008030 vs. NCBI nr
Match: KAG6598941.1 (RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 485.0 bits (1247), Expect = 4.0e-133
Identity = 249/251 (99.20%), Postives = 249/251 (99.20%), Query Frame = 0 

Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           M GPSS PSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MGGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 252
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]
BLAST of CmoCh05G008030 vs. NCBI nr
Match: XP_022997003.1 (RNA-binding protein 42-like [Cucurbita maxima])

HSP 1 Score: 483.4 bits (1243), Expect = 1.2e-132
Identity = 249/251 (99.20%), Postives = 249/251 (99.20%), Query Frame = 0 

Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           MAGPSS PSAPSSSSGSQFTYSNGSYFPLPFHLQQSA APAGPQYPSPYVAAPGPPAVPL
Sbjct: 1   MAGPSSAPSAPSSSSGSQFTYSNGSYFPLPFHLQQSATAPAGPQYPSPYVAAPGPPAVPL 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA
Sbjct: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT
Sbjct: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK
Sbjct: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240

Query: 241 SKLPKKSILHK 252
           SKLPKKSILHK
Sbjct: 241 SKLPKKSILHK 251

[Close]
BLAST of CmoCh05G008030 vs. TAIR 10
Match: AT3G04500.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 338.6 bits (867), Expect = 4.4e-93
Identity = 182/251 (72.51%), Postives = 202/251 (80.48%), Query Frame = 0 

Query: 1   MAGPSSTPSAPSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPGPPAVPL 60
           M+ P S+ S+ SSSS SQ+TY+  SY+  P+   Q   A   P  P+P  + PG    P 
Sbjct: 1   MSIPPSSGSS-SSSSSSQYTYAANSYYSAPYQPPQPYAAAPSPAVPAPVASIPGATVYPQ 60

Query: 61  PVTSVYPAPAPAAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKA 120
           PV      P PA Y  PQYQQA QLFQRDAQTITPEALE+VKAALASSE EHKAETKK+A
Sbjct: 61  PV-----GPVPAVYAYPQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRA 120

Query: 121 IPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRT 180
           IPRKAAGQSWEDPTL+EWPENDYRLFCGDLGNEVNDDVLSKAF+RFP+FNMA+V+RDKRT
Sbjct: 121 IPRKAAGQSWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRT 180

Query: 181 GKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKK 240
           GKTKGYGFVSF NP DLAAALKEMNGKYVGNRPIKLRKS+WKERTD +A ER K+H+ KK
Sbjct: 181 GKTKGYGFVSFLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNKK 240

Query: 241 SKLPKKSILHK 252
            K  KKSILHK
Sbjct: 241 QKTVKKSILHK 245

[Close]
BLAST of CmoCh05G008030 vs. TAIR 10
Match: AT3G14100.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 75.9 bits (185), Expect = 5.3e-14
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 143 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALK 202
           + +F GDL  EV D  L ++FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 144 FNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203

Query: 203 EMNGKYVGNRPIKLRKSNW 222
           EMNGK++ +R I   + NW
Sbjct: 204 EMNGKWLSSRQI---RCNW 219

[Close]
BLAST of CmoCh05G008030 vs. TAIR 10
Match: AT1G17370.1 (oligouridylate binding protein 1B )

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-13
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 143 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALK 202
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 203 EMNGKYVGNRPIKLRKSNW 222
           E+ GK++G+R I   + NW
Sbjct: 199 EITGKWLGSRQI---RCNW 214

[Close]
BLAST of CmoCh05G008030 vs. TAIR 10
Match: AT1G17370.2 (oligouridylate binding protein 1B )

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-13
Identity = 34/79 (43.04%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 143 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAALK 202
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 203 EMNGKYVGNRPIKLRKSNW 222
           E+ GK++G+R I   + NW
Sbjct: 199 EITGKWLGSRQI---RCNW 214

[Close]
BLAST of CmoCh05G008030 vs. TAIR 10
Match: AT3G19130.1 (RNA-binding protein 47B )

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 142 DYRLFCGDLGNEVNDDVLSKAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAAA 201
           D  +F GDL  +V D +L + FS R+PS   A+VV D  TG++KGYGFV F +  + + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260

Query: 202 LKEMNGKYVGNRPIKL 217
           L EMNG Y  NR +++
Sbjct: 261 LTEMNGAYCSNRQMRV 276

The following BLAST results are available for this feature:
BLAST of CmoCh05G008030 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q66KL91.4e-4044.49RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1[more]
Q0P5L05.4e-4048.31RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1[more]
Q9BTD89.3e-4049.28RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1[more]
Q91V819.3e-4049.28RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=2[more]
Q6AXT79.3e-4049.28RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=2[more]
BLAST of CmoCh05G008030 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ET571.8e-134100.00RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111436257 PE=4 S... [more]
A0A6J1KCL65.7e-13399.20RNA-binding protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111492062 PE=4 SV=... [more]
A0A1S4DU475.7e-12594.07LOW QUALITY PROTEIN: RNA-binding protein 42 OS=Cucumis melo OX=3656 GN=LOC103485... [more]
A0A0A0LH394.8e-12493.68RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075290 PE=4 SV... [more]
A0A6J1FBP04.1e-12392.89RNA-binding protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111443965 PE=4 S... [more]
BLAST of CmoCh05G008030 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929768.13.7e-134100.00RNA-binding protein 42-like [Cucurbita moschata][more]
XP_023545858.11.4e-13399.60RNA-binding protein 42-like [Cucurbita pepo subsp. pepo][more]
KAG7029895.13.1e-13399.20RNA-binding protein 42 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6598941.14.0e-13399.20RNA-binding protein 42, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022997003.11.2e-13299.20RNA-binding protein 42-like [Cucurbita maxima][more]
BLAST of CmoCh05G008030 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G04500.14.4e-9372.51RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G14100.15.3e-1445.57RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G17370.12.0e-1343.04oligouridylate binding protein 1B [more]
AT1G17370.22.0e-1343.04oligouridylate binding protein 1B [more]
AT3G19130.14.5e-1346.05RNA-binding protein 47B [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 144..217
e-value: 5.1E-21
score: 85.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 145..215
e-value: 8.0E-19
score: 67.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 143..221
score: 16.346634
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 78..217
e-value: 3.6E-24
score: 87.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 226..251
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..251
NoneNo IPR availablePANTHERPTHR47640:SF11RNA-BINDING PROTEIN 42-LIKEcoord: 37..251
NoneNo IPR availablePANTHERPTHR47640TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATEDcoord: 37..251
IPR034215RBM42, RNA recognition motifCDDcd12383RRM_RBM42coord: 137..219
e-value: 5.84954E-59
score: 179.726
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 126..223

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G008030.1CmoCh05G008030.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0017069 snRNA binding
molecular_function GO:0003676 nucleic acid binding