CmoCh05G006170 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCATGTCCAATCGGGTGCGAGAAAGCTTTGCTCTGTGTTGACGACGAAGCTGGTGCACTATGGCTTCGCTCCGAGCATTTGGAGTAATCCTTCAAAAATTATCCCCAAATTCGGTCACTTACAACTGCCCCCGTCTCTTCCATCTTCATAGTATCACTCTCTCTCTCTCGCTCTGCACGTATTGAATCAGAGTCCATGGCCATTTGAGCTGATTCCTGATTTTTTTTTTTTTTTTTGAAAATTTAGGAAATGGCTTGTGTTCGTTATCATCATTGGCTGCCGAAGCATCGAGTTCAGAAAGTAAGATGAAATGTCGTGGCAATCAAATGCGAAGGATATGGATGTCTCCGGTCTGTATGGGTAGGCGTTCCAGCAAAATTGCTGGTAGGAAGGTACATTCCTTTCAATATCTTATGTGATATTGCTTTCAAATCTTATGTATGTTTTGTTGGTGCTATTGACTTTATAGATAAGTTTATTAGATTGCTTAACTACATGTAGGGAGCTCAAGATGCAAAGAAGGCAAAGCTTTACTCTAGGATTGGGAAGGAGGTTGTTTCTGCGTAAGTAGCTATTTTTTCTCCTTTTGTGAATGATTTTCATTGTGCTAATAGCTTATGCTGTAGAATAATTCTCTTTATTGTTCTTGACAAATGTTTGGTGATGGCATTCAAAATAGTTAAGAGATTTGTGGTTGTACTGTTGTACCGTGTTTGAATCTGTGCCATGTAAATTGTTAGCCAATATGGCAACATGAGCCTCTAGGAGCTTGAACTTGGCTCTTTTTCATTGCCTCACTCATGACATGATACATTGATCTGTTTGCATCTTCTTCACTATATAGTGTTAAAAAGGGAGGAACGAGCCCCATATCCAATACCCTTTTGGCAGCCCTTCTTGAGAAAGCCAAGGAGCTTGATGTTCCAAAAGAAATTCTTGATCGCAACATTAAAAGGGCTTCCGAGAAAGGACAAGAGGCTTACATTGAGAAAATTTACGAGGTTTTTAATTAGCCAGTGATATTATCTTCATACTTTGTGTTGAAAAGAAGTGATTATTAGCTGTAAAATGCCGCATCTCTACAGGTATATGGTTTTGGTGGTGCTAGTATGGTTGTTGAGGTCTCAACAGATAAGATAAACCGCTCAGTTGCAGCGGTTAGAGAAGTAGTGAAGGACTATGGTGGAAAGATGGCAGATCCAGGATCTGTTATGTTCAAGTTCAGACGTGCTCGAGTTGTGAATGTTAAGGCCTCTGATGTTGACAAAGACCAGCTTCTCACCATATCTCTAGATGCTGGCGCGGAAGATGTTATTGAACCTCCAGAATATGAAGATGATACAGAAGAAGAGAGGTCGGAAAGGTAGCGTCTCTACACGTTATCAGTAGTTTTGTTTGCTTCTTCAATACATAACGGTTGTTGTTATGCTTTTAGCAATAATGAAACTTGAAATTTAGTATTATTAAAGAGCAATAGACATCCATCTCAGATAGCAAAGCTTTTTTAATATATCCAATATTAGGATTATTTTGAAAGAAATTTTATCTCCGTTTGTTTTTCCTGCAGATATTACAAGATTGTGACTTCCACCGAGAACTACTCGGGAATACTATCCAAGTTACGAGAAGAAAACATAAAGTTCGAACCCGACAGTGGTTCTGAGCTACTTCCTATAAGCTCGATTGAGGTATGTATTTTAACGTATATGTGGTTTCTTCATGTCACATCACTTTAAATTGCTTCAAGTTTTTTCTTATCCTTAATTTACAGTTTGTTGGAAGGCTATTAATACTTTAAAATTGCAAATTTCAACTTGACATGAATTTTTTTAACAAGAGACAACAACTTGAAATGAATTAGAGATAAGAAGAAAACAAAGTCTTGAATTAGTTCTTCAGTCAATTATTTGTTACTGTTGATAAAGTTTTTGAAGCTCAAAATTTAGAATTTCTGTGCATGTGCATGACACTTCGAGGAAATAGGGGTCTCTATTATGGAATAAACAAGAGGACAAAGATCAAAACCTTAGCAGTCATAGTGGTATCTATGATAATGGGATTGAATCTTTATTATTACTTCTTTTTATAAGAAACAAATTATTTCATTGATAAAAGGAAATTAACAAAAGATGTAGGATCCTATCTATAGGAAGATAACAAAAACTTTTCCTATGGGATATAAGAGATGCAAGACTACAACTATGAAAAGGCGGAAACAATTTCCTCCAATATAGAACTAAAAAAGTAGTAGAGTCAATAAAAGATTTGATGCCCTATTGTTTGTCTGAGAAGATATGAGAGTTTCTCTCTAACCACATAGTCCGAAAATGAGCACGGATAACACGGAGCCATAAGATCTTTTTCTTGTTCTTGAAAATATAGCCGGTGAAAGTGAGAGATAGGAAGGAAGAGATGTACCCCGGCAGAACTATAAACCATCCAAAAGCACGAGTGTTAAAATTCCAAAAAGCTGTAGCATGGGTATAAGTGCTGGACTGGTGAATGGTAGTCTCTTAGGCCCTTTTACAAATGATGCAACAGTTAGGGGAGATGGTAATCCAGAGGGATCTTCGTGGAGCTTGTCACAGGATACATAAGTGACTAAGCTCCCATATAATGAATTTGATCTTTTTTGGAAATTTTCCCTTCCAAATAGATTGATATAATTGTTCTTTGTCACTAGTTCTAGCTGTAGCAAGAGCCCTTGTCAATGACTTTGAGGTGAACATACCATCTTTATCAATGTTCTAAACCAAAGTGTGAGCTTTCTTGTTGAGTGTGAGTGCAAATAAAGAGGAGAAGCCCTCATTTAGAATTGACTGACCCATCAAACAATCTGTCCAAAGCAGAGTATTGTCTCCCCTACCAACTTTACCAGATATGCGTTCAGAAACTAGATTCTTTGATTTCTCAATGCCCTTCTACGAGCTGAATAATAGGATTGACTTTTAATGCTGTTGGAACTTCTTATATTATAAATTGGTGTAATAAGTAAAGGATAAGAGAATGGGACAAAACTAAGTAAGGTCAAATCCCTTAAAATCAAATAAAAGGGGAAGATAGGGTGGTCAATGTTCCGACAATGGTTTGCTAAAGGAAGCGGATTTATAAACTTGATTTAGACTTGTCATTGTTGAAAGTATTAATGAGAAACATTGCATTGGAGACTACTTGTTCACAAAGATTGTTTCTGAGTTAATGAGTCGATCTTGATTTTTCTTCGAGGCCCTTTACTAAGAGTTATTATCTACTTTGGATAGAATACCAAAAGAGTGTTAGCTAGTCAATTCTACTTAAGAAAGAAAGAATAGCTCAATAATTACTATAGACCGGCTAAGCCCATTGAGTGCTGTTTCATAGACCTCAATCTTGCCTACAGATGATAAAGATAATCTAGTGCTGCCCATCTTTATTCAAGATAAGATAAAAATATAGCCTACAAAAAGGAATGACATACTTCCTTGCACAAAAACTTTGAAAGGCACCATGAAAATGGATTTCACCCATTTGATAGGTCAACACATACAATGGCTAGAAGAGAAACAAATTTCATTGATGAATTTAATAAAAGGAGCTAATAGACTCCCAACCACCTATCGATGTATTACAAGAAAGATCTCCAATTTGATATAAGAGAAGAGAAGATAGACTATAATTGCTAAAAGGAAATTTATATACATCAACTTGGAGTCTATAAGGAAACTTCACATCTAATATCGGAAGACATTGATCTAGATACGACGGTATGAAAAAGACCTCAGCTGTTCAATGGGAATCTAATCGGACGATTTTTTGAAACCTCAAAAATACACTAGTCAAGTTCTGAAATATAAGTTCAAGAAGTCAAAACCCAATCCAGATTTTGTTTTTTTCTTTTGGTTTTTTGGCGTCCGTGGGTGGGGGATTACTAAATTATACACAAAATCTCCTTCTTTCAAATAAATAGTGTTTTTTTCAGTAGGGGCTCAATGCTCTGCCAAGTTGTGACATTATTGAGTTTCAGGTGGATGATGAAGCTATGGACTTGAATAAAGAACTAATGGACAAGTTGCTTGAACTCGATGATGTCGATGCTGTTTATACAGACCAGAAGTGAATATTTTTTCTTCTGTAATATCCTGTCAACATGGAGAGAGGTACTTTACTCTCCCATATATTGGATCTGTGGTTGCGATCTTAATTCGGTCTAGTCACCTTGAAAGCTGATAGATCTTTCTCAGATGAGAGTTATCTTAAGTTTGTAAGGGCTATGAACTTTTTTTTTTACTGCATTATGAGGCAGGGATTTCCTTTTACTTCCCCTCTAGTTTCAAGACCTTAGAAATCATTGTAGAATAATACTCGTACAAGAGTGATAACGATGTCAATTATTCAAATTTTATCTTTTTCATAAATTTTAGGTGGGTGAGGGGATGATTCTTCTGATATAAAGTATAATTCAAGGATTGTTTCTTGGTTCTATTGGAAAATGATCTTACTCCACGAGGTGAATAATTGTAGTCGTGCATCATCATTGATTATATGGAAAATAAAATCACGCACTCTTGAAGTCAGAAAAGTTATATGATATTTGATATGATTCCCATGACTTATACTTACTATTTCTAATGGCTTGCGATTATTGCTGTCTCTTTTACTGTTTGGCCAATCTATGGATGTGAAGTGATGTGAAGTTTCAATATATTTATAATCTGAAAAACAGATGCGTTCCCCGCCTGTCCTCCC CCATGTCCAATCGGGTGCGAGAAAGCTTTGCTCTGTGTTGACGACGAAGCTGGTGCACTATGGCTTCGCTCCGAGCATTTGGAGTAATCCTTCAAAAATTATCCCCAAATTCGGTCACTTACAACTGCCCCCGTCTCTTCCATCTTCATAGAAATGGCTTGTGTTCGTTATCATCATTGGCTGCCGAAGCATCGAGTTCAGAAAGTAAGATGAAATGTCGTGGCAATCAAATGCGAAGGATATGGATGTCTCCGGTCTGTATGGGTAGGCGTTCCAGCAAAATTGCTGGTAGGAAGGGAGCTCAAGATGCAAAGAAGGCAAAGCTTTACTCTAGGATTGGGAAGGAGGTTGTTTCTGCTGTTAAAAAGGGAGGAACGAGCCCCATATCCAATACCCTTTTGGCAGCCCTTCTTGAGAAAGCCAAGGAGCTTGATGTTCCAAAAGAAATTCTTGATCGCAACATTAAAAGGGCTTCCGAGAAAGGACAAGAGGCTTACATTGAGAAAATTTACGAGGTATATGGTTTTGGTGGTGCTAGTATGGTTGTTGAGGTCTCAACAGATAAGATAAACCGCTCAGTTGCAGCGGTTAGAGAAGTAGTGAAGGACTATGGTGGAAAGATGGCAGATCCAGGATCTGTTATGTTCAAGTTCAGACGTGCTCGAGTTGTGAATGTTAAGGCCTCTGATGTTGACAAAGACCAGCTTCTCACCATATCTCTAGATGCTGGCGCGGAAGATGTTATTGAACCTCCAGAATATGAAGATGATACAGAAGAAGAGAGGTCGGAAAGATATTACAAGATTGTGACTTCCACCGAGAACTACTCGGGAATACTATCCAAGTTACGAGAAGAAAACATAAAGTTCGAACCCGACAGTGGTTCTGAGCTACTTCCTATAAGCTCGATTGAGGTGGATGATGAAGCTATGGACTTGAATAAAGAACTAATGGACAAGTTGCTTGAACTCGATGATGTCGATGCTGTTTATACAGACCAGAAGTGAATATTTTTTCTTCTGTAATATCCTGTCAACATGGAGAGAGGTACTTTACTCTCCCATATATTGGATCTGTGGTTGCGATCTTAATTCGGTCTAGTCACCTTGAAAGCTGATAGATCTTTCTCAGATGAGAGTTATCTTAAGTTTGTAAGGGCTATGAACTTTTTTTTTTACTGCATTATGAGGCAGGGATTTCCTTTTACTTCCCCTCTAGTTTCAAGACCTTAGAAATCATTGTAGAATAATACTCGTACAAGAGTGATAACGATGTCAATTATTCAAATTTTATCTTTTTCATAAATTTTAGGTGGGTGAGGGGATGATTCTTCTGATATAAAGTATAATTCAAGGATTGTTTCTTGGTTCTATTGGAAAATGATCTTACTCCACGAGGTGAATAATTGTAGTCGTGCATCATCATTGATTATATGGAAAATAAAATCACGCACTCTTGAAGTCAGAAAAGTTATATGATATTTGATATGATTCCCATGACTTATACTTACTATTTCTAATGGCTTGCGATTATTGCTGTCTCTTTTACTGTTTGGCCAATCTATGGATGTGAAGTGATGTGAAGTTTCAATATATTTATAATCTGAAAAACAGATGCGTTCCCCGCCTGTCCTCCC ATGGCTTCGCTCCGAGCATTTGGAGTAATCCTTCAAAAATTATCCCCAAATTCGGTCACTTACAACTGCCCCCGTCTCTTCCATCTTCATAGAAATGGCTTGTGTTCGTTATCATCATTGGCTGCCGAAGCATCGAGTTCAGAAAGTAAGATGAAATGTCGTGGCAATCAAATGCGAAGGATATGGATGTCTCCGGTCTGTATGGGTAGGCGTTCCAGCAAAATTGCTGGTAGGAAGGGAGCTCAAGATGCAAAGAAGGCAAAGCTTTACTCTAGGATTGGGAAGGAGGTTGTTTCTGCTGTTAAAAAGGGAGGAACGAGCCCCATATCCAATACCCTTTTGGCAGCCCTTCTTGAGAAAGCCAAGGAGCTTGATGTTCCAAAAGAAATTCTTGATCGCAACATTAAAAGGGCTTCCGAGAAAGGACAAGAGGCTTACATTGAGAAAATTTACGAGGTATATGGTTTTGGTGGTGCTAGTATGGTTGTTGAGGTCTCAACAGATAAGATAAACCGCTCAGTTGCAGCGGTTAGAGAAGTAGTGAAGGACTATGGTGGAAAGATGGCAGATCCAGGATCTGTTATGTTCAAGTTCAGACGTGCTCGAGTTGTGAATGTTAAGGCCTCTGATGTTGACAAAGACCAGCTTCTCACCATATCTCTAGATGCTGGCGCGGAAGATGTTATTGAACCTCCAGAATATGAAGATGATACAGAAGAAGAGAGGTCGGAAAGATATTACAAGATTGTGACTTCCACCGAGAACTACTCGGGAATACTATCCAAGTTACGAGAAGAAAACATAAAGTTCGAACCCGACAGTGGTTCTGAGCTACTTCCTATAAGCTCGATTGAGGTGGATGATGAAGCTATGGACTTGAATAAAGAACTAATGGACAAGTTGCTTGAACTCGATGATGTCGATGCTGTTTATACAGACCAGAAGTGA MASLRAFGVILQKLSPNSVTYNCPRLFHLHRNGLCSLSSLAAEASSSESKMKCRGNQMRRIWMSPVCMGRRSSKIAGRKGAQDAKKAKLYSRIGKEVVSAVKKGGTSPISNTLLAALLEKAKELDVPKEILDRNIKRASEKGQEAYIEKIYEVYGFGGASMVVEVSTDKINRSVAAVREVVKDYGGKMADPGSVMFKFRRARVVNVKASDVDKDQLLTISLDAGAEDVIEPPEYEDDTEEERSERYYKIVTSTENYSGILSKLREENIKFEPDSGSELLPISSIEVDDEAMDLNKELMDKLLELDDVDAVYTDQK Homology
BLAST of CmoCh05G006170 vs. ExPASy Swiss-Prot
Match: O82314 (Probable transcriptional regulatory protein At2g25830 OS=Arabidopsis thaliana OX=3702 GN=At2g25830 PE=2 SV=2) HSP 1 Score: 407.9 bits (1047), Expect = 1.0e-112 Identity = 217/294 (73.81%), Postives = 252/294 (85.71%), Query Frame = 0
BLAST of CmoCh05G006170 vs. ExPASy Swiss-Prot
Match: Q9Z7Y0 (Probable transcriptional regulatory protein CPn_0573/CP_0176/CPj0573/CpB0595 OS=Chlamydia pneumoniae OX=83558 GN=CPn_0573 PE=3 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 4.0e-32 Identity = 81/234 (34.62%), Postives = 136/234 (58.12%), Query Frame = 0
BLAST of CmoCh05G006170 vs. ExPASy Swiss-Prot
Match: Q9PJT5 (Probable transcriptional regulatory protein TC_0742 OS=Chlamydia muridarum (strain MoPn / Nigg) OX=243161 GN=TC_0742 PE=3 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 8.9e-32 Identity = 83/234 (35.47%), Postives = 132/234 (56.41%), Query Frame = 0
BLAST of CmoCh05G006170 vs. ExPASy Swiss-Prot
Match: Q6MBJ7 (Probable transcriptional regulatory protein pc1328 OS=Protochlamydia amoebophila (strain UWE25) OX=264201 GN=pc1328 PE=3 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 2.2e-30 Identity = 87/243 (35.80%), Postives = 132/243 (54.32%), Query Frame = 0
BLAST of CmoCh05G006170 vs. ExPASy Swiss-Prot
Match: Q3KLP1 (Probable transcriptional regulatory protein CTA_0499 OS=Chlamydia trachomatis serovar A (strain ATCC VR-571B / DSM 19440 / HAR-13) OX=315277 GN=CTA_0499 PE=3 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 2.9e-30 Identity = 81/234 (34.62%), Postives = 129/234 (55.13%), Query Frame = 0
BLAST of CmoCh05G006170 vs. ExPASy TrEMBL
Match: A0A6J1HCH3 (probable transcriptional regulatory protein At2g25830 OS=Cucurbita moschata OX=3662 GN=LOC111462375 PE=3 SV=1) HSP 1 Score: 598.2 bits (1541), Expect = 2.0e-167 Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
BLAST of CmoCh05G006170 vs. ExPASy TrEMBL
Match: A0A6J1KC61 (probable transcriptional regulatory protein At2g25830 OS=Cucurbita maxima OX=3661 GN=LOC111492519 PE=3 SV=1) HSP 1 Score: 594.0 bits (1530), Expect = 3.8e-166 Identity = 312/315 (99.05%), Postives = 315/315 (100.00%), Query Frame = 0
BLAST of CmoCh05G006170 vs. ExPASy TrEMBL
Match: A0A6J1BRW8 (probable transcriptional regulatory protein At2g25830 OS=Momordica charantia OX=3673 GN=LOC111004995 PE=3 SV=1) HSP 1 Score: 546.6 bits (1407), Expect = 6.9e-152 Identity = 288/320 (90.00%), Postives = 303/320 (94.69%), Query Frame = 0
BLAST of CmoCh05G006170 vs. ExPASy TrEMBL
Match: A0A1S3BBQ3 (probable transcriptional regulatory protein At2g25830 OS=Cucumis melo OX=3656 GN=LOC103488183 PE=3 SV=1) HSP 1 Score: 509.2 bits (1310), Expect = 1.2e-140 Identity = 273/320 (85.31%), Postives = 288/320 (90.00%), Query Frame = 0
BLAST of CmoCh05G006170 vs. ExPASy TrEMBL
Match: A0A0A0LLJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G373580 PE=3 SV=1) HSP 1 Score: 505.8 bits (1301), Expect = 1.3e-139 Identity = 267/320 (83.44%), Postives = 288/320 (90.00%), Query Frame = 0
BLAST of CmoCh05G006170 vs. NCBI nr
Match: XP_022961678.1 (probable transcriptional regulatory protein At2g25830 [Cucurbita moschata]) HSP 1 Score: 598.2 bits (1541), Expect = 4.1e-167 Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
BLAST of CmoCh05G006170 vs. NCBI nr
Match: KAG6598777.1 (putative transcriptional regulatory protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029716.1 putative transcriptional regulatory protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 595.1 bits (1533), Expect = 3.5e-166 Identity = 313/315 (99.37%), Postives = 315/315 (100.00%), Query Frame = 0
BLAST of CmoCh05G006170 vs. NCBI nr
Match: XP_022997654.1 (probable transcriptional regulatory protein At2g25830 [Cucurbita maxima]) HSP 1 Score: 594.0 bits (1530), Expect = 7.7e-166 Identity = 312/315 (99.05%), Postives = 315/315 (100.00%), Query Frame = 0
BLAST of CmoCh05G006170 vs. NCBI nr
Match: XP_023545627.1 (probable transcriptional regulatory protein At2g25830 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 593.2 bits (1528), Expect = 1.3e-165 Identity = 312/315 (99.05%), Postives = 314/315 (99.68%), Query Frame = 0
BLAST of CmoCh05G006170 vs. NCBI nr
Match: XP_038885422.1 (probable transcriptional regulatory protein At2g25830 [Benincasa hispida] >XP_038885423.1 probable transcriptional regulatory protein At2g25830 [Benincasa hispida] >XP_038885424.1 probable transcriptional regulatory protein At2g25830 [Benincasa hispida] >XP_038885425.1 probable transcriptional regulatory protein At2g25830 [Benincasa hispida] >XP_038885427.1 probable transcriptional regulatory protein At2g25830 [Benincasa hispida] >XP_038885428.1 probable transcriptional regulatory protein At2g25830 [Benincasa hispida] >XP_038885429.1 probable transcriptional regulatory protein At2g25830 [Benincasa hispida]) HSP 1 Score: 555.8 bits (1431), Expect = 2.3e-154 Identity = 293/320 (91.56%), Postives = 304/320 (95.00%), Query Frame = 0
BLAST of CmoCh05G006170 vs. TAIR 10
Match: AT2G25830.1 (YebC-related ) HSP 1 Score: 407.9 bits (1047), Expect = 7.3e-114 Identity = 217/294 (73.81%), Postives = 252/294 (85.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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