CmoCh05G005290 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G005290
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRNA-binding protein 38-like
LocationCmo_Chr05: 2552550 .. 2554877 (+)
RNA-Seq ExpressionCmoCh05G005290
SyntenyCmoCh05G005290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGACCCTTTTCAGTTCCAGAATTACAATTCCTCTCCCATGGCCGCCGCCATCTCTCCATAAATCCCTTCCCATTTGTCTCATTCATGAACAACATCACCGGCCGCTTCCCTCTCCGCCGTACTCCGCCTTCCTCCTCCTCTTAAACATCCGGCGGCCATGGCTGAAAATTTCTCCAACACTCACCCGCCGCCCTTCGGCGACACCACCTGGACCAAACTCTTCGTCGGAGGCCTCGCCTGGGAGACACAATCCGATGAAATGCGCGCCTTCTTCCAACAATTTGGGGAAATTCTTGAAGCTGTCATAATCCGTGATAAGAACACCGGCAAATCCAAAGGCTACGGATTCGTAAGTGTTCCTTAATTCCTTCGATTTGTCGTTTTTTTTTTTAAATTTAATTTTTTTGTTCCAATTAATTAGGTCACTTTTAGAGATCCTGATTCGGCTAGAAGGGCGTGTGCTAATCCTAATCCGATTATTTGTGGGAGGAGGGCTAATTGTAACATCGCCGCCTTCGGCCGGGCTCGTCCTCCGCCGCCGCCGCCGCTGCTACTTGGAGGTTTCCACCCCGATCGCCTTCCGTACCTGAATTTACTTTCGTTAATTTTTTAATTGGTTGACATTTTAAATCGGTGGAATTGTACAGGACGGAATCAAATTGGGAATCTTCAAACTACAAGTGCGGCTGCAGGGTCTTACGGTGGGTTACTGACGCCGTATCCTCCGCCGCCGTCGCCGCCGCCGCCGCAGATCATGTTCCCAGCATATAGGTACGTTTGCATGGTCCTGCAACACCCAACAGTGTTTTGGACGGCGACAACTTTTTAAGGAAAAACCATTTTGCTGGACAAGAAGTCAAATGTTTATCCAATTTCCGGAAAAAAAAAAAAAAAAAAAGCTTGTTCTTATCCTTTTTATTTTTTATTATTTTATTATTTTTTTAATTTTTTAATTTTTTAATTTTTTAATTTTAATTTTTTGTTGCAGATACCGATCCTACGCCCCAAATTACACACTTCCTTACCATCAAGTAGGCCATTTGCTCTTAATTTTCAGTTTTTTTTTTTTAATTTTTATTTTGGTCCCACAACTTTTTCTATTTTTAATTTTTTTAATATCTATTTTAATTCTTCCACGGTCAATTATTGACATAATTTTCACCCTCATCATTGTACTGACCTAAACAAAGTGAAACTTGGATCTCGACCCAATGAGCATAAGATACTATTTGACTCTAGATAGGTTGACCTAATGTTTAATAGCCAATTCCATGGTTCACATTAAGCTTGATTCATTGGACTAACATGTACTTGTTTTGACAGGCTATTTATAACCCACAACTTCAATCGGCTCAGTTGTACCCGCAGTCGCCATGTTCTTCTTCTTATGGCTATGGCTATGGCTATCCTTCTTCTTCTTCACCGTCACCAAGGGGAGCATTTCCCGTACATGGCTACGGGCATGGCCATGGCCATGGCCATGATCCTTCTTCTCCATTGTCATCCTCACCATCCTACTTCCCCTACTATACAAATTACACCCACATGCAACAGCCGTTATTCTACGCTCACATGCACCAGATCGCCACTCCCACTACTGGTAAATTTATATAATTCTTCGCTCTTTTAATTAATTAATTTGATATCATTATTCCTCGTTTTAATTGCATCACCAATGATAATGATTATGATTACAAATAGTGTCTCTAACACTCACATGGGTTAACCCTCATCCCATGTGATGAATGAGCTGTCCGTGATCAGAAGTTATTAGGTTTAAGTAATGAATCCTTAAAAATTTATAATAATTTTTTTAATTTTTAAATATATTTAAAAAAAATTTATGGTATTTTTAGACACAGATTTACGTATATTGGATCCGAGAAATCTTCTGAACAAATTCTAAATTTTGAATTAGTCGGGTCATTGACCAAACAATCCGAATACAGTTTACAACGTAACCTTTTATTTTCAGTTTTGGCTAAGTTTGGTTGTCGGGTTATTCTTATATATATATATATATATATAATGTATCACTATCATCGGTTACAGACGTCAATAATTCTTAATATAAAAAGCACGATTAAATTGAGTTGTAATTAATATATAAGTCGAAAGTTAGAAAGCTTATGTATAATTTGAATGTTGGTTCAGGTAGACAGAGTCCAACAGAGACAGAAGGAGGGGCCAGTGGCTCTAATACCCCAAATACTTGTTAGAATTATCTTGTTCATATTATATTATTAATTATAATTATAATTATATTGAACCATATTTTTCTATTTTATTATTTTTCTTAAATATCATCATTTTTTTGAGTTCATCTC

mRNA sequence

TCGACCCTTTTCAGTTCCAGAATTACAATTCCTCTCCCATGGCCGCCGCCATCTCTCCATAAATCCCTTCCCATTTGTCTCATTCATGAACAACATCACCGGCCGCTTCCCTCTCCGCCGTACTCCGCCTTCCTCCTCCTCTTAAACATCCGGCGGCCATGGCTGAAAATTTCTCCAACACTCACCCGCCGCCCTTCGGCGACACCACCTGGACCAAACTCTTCGTCGGAGGCCTCGCCTGGGAGACACAATCCGATGAAATGCGCGCCTTCTTCCAACAATTTGGGGAAATTCTTGAAGCTGTCATAATCCGTGATAAGAACACCGGCAAATCCAAAGGCTACGGATTCGTCACTTTTAGAGATCCTGATTCGGCTAGAAGGGCGTGTGCTAATCCTAATCCGATTATTTGTGGGAGGAGGGCTAATTGTAACATCGCCGCCTTCGGCCGGGCTCGTCCTCCGCCGCCGCCGCCGCTGCTACTTGGAGGACGGAATCAAATTGGGAATCTTCAAACTACAAGTGCGGCTGCAGGGTCTTACGGTGGGTTACTGACGCCGTATCCTCCGCCGCCGTCGCCGCCGCCGCCGCAGATCATGTTCCCAGCATATAGATACCGATCCTACGCCCCAAATTACACACTTCCTTACCATCAAGCTATTTATAACCCACAACTTCAATCGGCTCAGTTGTACCCGCAGTCGCCATGTTCTTCTTCTTATGGCTATGGCTATGGCTATCCTTCTTCTTCTTCACCGTCACCAAGGGGAGCATTTCCCGTACATGGCTACGGGCATGGCCATGGCCATGGCCATGATCCTTCTTCTCCATTGTCATCCTCACCATCCTACTTCCCCTACTATACAAATTACACCCACATGCAACAGCCGTTATTCTACGCTCACATGCACCAGATCGCCACTCCCACTACTGGTAGACAGAGTCCAACAGAGACAGAAGGAGGGGCCAGTGGCTCTAATACCCCAAATACTTGTTAGAATTATCTTGTTCATATTATATTATTAATTATAATTATAATTATATTGAACCATATTTTTCTATTTTATTATTTTTCTTAAATATCATCATTTTTTTGAGTTCATCTC

Coding sequence (CDS)

ATGGCTGAAAATTTCTCCAACACTCACCCGCCGCCCTTCGGCGACACCACCTGGACCAAACTCTTCGTCGGAGGCCTCGCCTGGGAGACACAATCCGATGAAATGCGCGCCTTCTTCCAACAATTTGGGGAAATTCTTGAAGCTGTCATAATCCGTGATAAGAACACCGGCAAATCCAAAGGCTACGGATTCGTCACTTTTAGAGATCCTGATTCGGCTAGAAGGGCGTGTGCTAATCCTAATCCGATTATTTGTGGGAGGAGGGCTAATTGTAACATCGCCGCCTTCGGCCGGGCTCGTCCTCCGCCGCCGCCGCCGCTGCTACTTGGAGGACGGAATCAAATTGGGAATCTTCAAACTACAAGTGCGGCTGCAGGGTCTTACGGTGGGTTACTGACGCCGTATCCTCCGCCGCCGTCGCCGCCGCCGCCGCAGATCATGTTCCCAGCATATAGATACCGATCCTACGCCCCAAATTACACACTTCCTTACCATCAAGCTATTTATAACCCACAACTTCAATCGGCTCAGTTGTACCCGCAGTCGCCATGTTCTTCTTCTTATGGCTATGGCTATGGCTATCCTTCTTCTTCTTCACCGTCACCAAGGGGAGCATTTCCCGTACATGGCTACGGGCATGGCCATGGCCATGGCCATGATCCTTCTTCTCCATTGTCATCCTCACCATCCTACTTCCCCTACTATACAAATTACACCCACATGCAACAGCCGTTATTCTACGCTCACATGCACCAGATCGCCACTCCCACTACTGGTAGACAGAGTCCAACAGAGACAGAAGGAGGGGCCAGTGGCTCTAATACCCCAAATACTTGTTAG

Protein sequence

MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTHMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC
Homology
[Close]
BLAST of CmoCh05G005290 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-24
Identity = 81/204 (39.71%), Postives = 106/204 (51.96%), Query Frame = 0 

Query: 15  DTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYGFVTFRDPDSAR 74
           DTT+TK+FVGGL + T    +R +F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 75  RACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYGGLLTP 134
           RAC +PNPII GR+AN N+A  G      P  L  G    +  L  T     +YG  LTP
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLG----AKPRSLQTGFAVGVQQLHPT-LIQRTYG--LTP 147

Query: 135 ---YPPP--------PSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQSP 194
              YPP         P+ P P +  P   Y   +P Y      A Y P       Y  SP
Sbjct: 148 HYIYPPAIVQPSVVIPATPVPSLSSPYLEYTPASPAY------AQYPPATYDQYPYAASP 207

Query: 195 CSSSYGYGYGYPSSSSPSPRGAFP 208
            +++   GYGYP++   +   A P
Sbjct: 208 AAATSFVGYGYPAAVPQALSAAAP 218

[Close]
BLAST of CmoCh05G005290 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 113.6 bits (283), Expect = 3.6e-24
Identity = 80/204 (39.22%), Postives = 105/204 (51.47%), Query Frame = 0 

Query: 15  DTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYGFVTFRDPDSAR 74
           DTT+TK+FVGGL + T    +R +F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 75  RACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYGGLLTP 134
           RAC +PNPII GR+AN N+A  G      P  L  G    +  L  T     +YG  LTP
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLG----AKPRSLQTGFAIGVQQLHPT-LIQRTYG--LTP 149

Query: 135 ---YPPP--------PSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQSP 194
              YPP         P+ P P +  P   Y   +P Y      A Y P       Y  SP
Sbjct: 150 HYIYPPAIVQPSVVIPAAPVPSLSSPYIEYTPASPAY------AQYPPATYDQYPYAASP 209

Query: 195 CSSSYGYGYGYPSSSSPSPRGAFP 208
            +++   GY YP++   +   A P
Sbjct: 210 ATAASFVGYSYPAAVPQALSAAAP 220

[Close]
BLAST of CmoCh05G005290 vs. ExPASy Swiss-Prot
Match: Q6DIV4 (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.4e-22
Identity = 73/189 (38.62%), Postives = 99/189 (52.38%), Query Frame = 0 

Query: 15  DTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYGFVTFRDPDSAR 74
           DTT+TK+FVGGL + T    +R +F+ FG+I EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 75  RACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYGGLLTP 134
           RAC +PNPII GR+AN N+A  G        P  L     IG  Q   A      GL   
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG------AKPRNLQSAFTIGVQQLHPAFIQRPFGLTPQ 126

Query: 135 YPPPPSPPPPQIMFPAYRYRSYAPNYTLPY------HQAIYNPQLQSAQLYPQSPCSSSY 194
           Y  PP+   P ++ P     +  P+   PY       QA  +    + + YP +   ++ 
Sbjct: 127 YIYPPAIVQPSVVIP-----TPIPSLQSPYIDYNAATQAFTHYTTAAYEQYPYAASPATG 184

Query: 195 GYGYGYPSS 198
             GYGY S+
Sbjct: 187 YMGYGYTSA 184

[Close]
BLAST of CmoCh05G005290 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.7e-22
Identity = 76/199 (38.19%), Postives = 106/199 (53.27%), Query Frame = 0 

Query: 15  DTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYGFVTFRDPDSAR 74
           DTT+TK+FVGGL + T    +R +F+ FGEI EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 75  RACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYGGLLTP 134
           RAC +PNPII GR+AN N+A  G A+P    P    G  QI       A      G+ T 
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRVMQPGFTFGVPQI-----HPAFIQRPYGIPTH 126

Query: 135 YPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQSPCSSSYGYGYGY 194
           Y  P +   P ++ P  +  + +   + PY   I       AQ    +  +++  Y   Y
Sbjct: 127 YVYPQAFMQPSVVIPHIQPTATSATASSPY---IDYTGAAYAQYASAATAAAAAAYEQ-Y 186

Query: 195 PSSSSPSPRGAFPVHGYGH 214
           P ++SP+  G     GYG+
Sbjct: 187 PYAASPAATGYVAAAGYGY 195

[Close]
BLAST of CmoCh05G005290 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-21
Identity = 93/265 (35.09%), Postives = 123/265 (46.42%), Query Frame = 0 

Query: 13  FGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYGFVTFRDPDS 72
           FGDT  TK+FVGGLAW+T  + M   F ++G+ILEAVII DK T +SKGYGFVTF+D  +
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 73  ARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTSAAAGSYGGLL 132
           A RAC +  PII GRRANCN+A+             LGGR +     T+       G   
Sbjct: 71  ATRACEDSTPIINGRRANCNLAS-------------LGGRLRKSPTMTSPQQGPKNGNRA 130

Query: 133 TPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQSPCSSSYG--- 192
           T   PP      Q  +P+         +    HQA+      SA + P    +   G   
Sbjct: 131 T---PPHVGNHSQWYYPSGFTNQ---QHQQQNHQAVPFYGYPSAYVAPNMTFNQKVGYVG 190

Query: 193 --YGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTHMQQPLFY 252
             Y  GY +   P P+   P   Y H H +G       ++SP   P+YT Y + Q     
Sbjct: 191 GTYMNGYYAQMQPQPQSQ-PQPQYYHHHMYGGGRVMVGAASP-MVPFYTVYPYHQSQAIG 250

Query: 253 AHMHQIATPTTGRQSP-TETEGGAS 272
                 + P +    P + T GG S
Sbjct: 251 FPQPSFSKPLSFSTPPISGTVGGES 254

[Close]
BLAST of CmoCh05G005290 vs. ExPASy TrEMBL
Match: A0A6J1HBU2 (RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 584.3 bits (1505), Expect = 2.6e-163
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYP 180
           TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYP
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYP 180

Query: 181 QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTH 240
           QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTH
Sbjct: 181 QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTH 240

Query: 241 MQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 280
           MQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC
Sbjct: 241 MQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 279

[Close]
BLAST of CmoCh05G005290 vs. ExPASy TrEMBL
Match: A0A6J1HBJ1 (RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 9.1e-156
Identity = 270/279 (96.77%), Postives = 270/279 (96.77%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYP 180
           TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQ         AQLYP
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQ---------AQLYP 180

Query: 181 QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTH 240
           QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTH
Sbjct: 181 QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTH 240

Query: 241 MQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 280
           MQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC
Sbjct: 241 MQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 270

[Close]
BLAST of CmoCh05G005290 vs. ExPASy TrEMBL
Match: A0A6J1KAW8 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 8.8e-143
Identity = 256/280 (91.43%), Postives = 257/280 (91.79%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVII DKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNL T
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLHT 120

Query: 121 TSAAAGSYGGLLTPYPPPP-SPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 180
           TSAAA S+GGLLTPYPPPP SPPPPQIMFPAYRYRSYAPNYTLPYHQ          QLY
Sbjct: 121 TSAAAASFGGLLTPYPPPPSSPPPPQIMFPAYRYRSYAPNYTLPYHQ---------PQLY 180

Query: 181 PQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYT 240
            QSPCSSSYGY YGYPSSSS SPR AFPVHGYGHGH HG  PSSPLSSSPSYFPYYTNYT
Sbjct: 181 QQSPCSSSYGYAYGYPSSSSQSPRVAFPVHGYGHGHAHG--PSSPLSSSPSYFPYYTNYT 240

Query: 241 HMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 280
           HMQQPLFYAHMH IATP TGRQSPTETEGGASGSNTPNTC
Sbjct: 241 HMQQPLFYAHMHPIATPITGRQSPTETEGGASGSNTPNTC 269

[Close]
BLAST of CmoCh05G005290 vs. ExPASy TrEMBL
Match: A0A1S3BBB0 (RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 4.6e-99
Identity = 208/293 (70.99%), Postives = 224/293 (76.45%), Query Frame = 0 

Query: 2   AENFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 61
           + NF   HPPPF GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII+DK+TGKSK
Sbjct: 4   SNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSK 63

Query: 62  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 121
           GYGFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGNLQ+
Sbjct: 64  GYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSP-SSGGRNQIGNLQS 123

Query: 122 TS-AAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 181
           TS AAAGSYGGL  P+      PPPQ++FP YRYRSYAPNYT+PYHQAIYNPQ+Q  Q+Y
Sbjct: 124 TSPAAAGSYGGLRPPF------PPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMY 183

Query: 182 PQSP-----CSSSYGYGYGYPSSSSPS--PRGAFPVHGYGHGHGHGHDPSSPLSSSPSYF 241
            QSP      SSSY YGYGY SS S S  PR AF V        HGH P      SPSYF
Sbjct: 184 QQSPSPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSV--------HGHPP-----QSPSYF 243

Query: 242 PYYTNYTHMQQP--LFYAHMHQIATP-TTGRQ----SPTETEGGASGSNTPNT 279
           PYYTNYTHMQQ   LFY  M QI TP TTG Q    +PTETE GASGSN+PNT
Sbjct: 244 PYYTNYTHMQQQAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNT 276

[Close]
BLAST of CmoCh05G005290 vs. ExPASy TrEMBL
Match: A0A0A0LLP2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 3.3e-97
Identity = 205/290 (70.69%), Postives = 221/290 (76.21%), Query Frame = 0 

Query: 4   NFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGY 63
           NF   HPPPF GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII+DK+TGKSKGY
Sbjct: 6   NFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGY 65

Query: 64  GFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQTTS 123
           GFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGNLQ+T+
Sbjct: 66  GFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSP-SSGGRNQIGNLQSTA 125

Query: 124 -AAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQ 183
            AAAGSYGGL  P+PPPP      ++FP YRYRSYAPNYT+PYHQAIYNPQ+Q  Q+Y Q
Sbjct: 126 PAAAGSYGGLRPPFPPPP------LIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQ 185

Query: 184 SP-----CSSSYGYGYGYPSSSSPS--PRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPY 243
           SP      SSSY Y YGY SS S S  PR AF V        HGH P      SPSYFPY
Sbjct: 186 SPSPSPSSSSSYYYSYGYSSSPSSSQLPRAAFSV--------HGHPP-----QSPSYFPY 245

Query: 244 YTNYTHMQQP-LFYAHMHQIATP-TTGRQ----SPTETEGGASGSNTPNT 279
           YTNYTHMQQ  L Y  M QI TP TTG Q    +PTETE GASGSN+PNT
Sbjct: 246 YTNYTHMQQQGLVYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNT 275

[Close]
BLAST of CmoCh05G005290 vs. NCBI nr
Match: XP_022961976.1 (RNA-binding protein 38-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 584.3 bits (1505), Expect = 5.4e-163
Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYP 180
           TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYP
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYP 180

Query: 181 QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTH 240
           QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTH
Sbjct: 181 QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTH 240

Query: 241 MQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 280
           MQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC
Sbjct: 241 MQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 279

[Close]
BLAST of CmoCh05G005290 vs. NCBI nr
Match: XP_023546076.1 (RNA-binding protein 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 560.8 bits (1444), Expect = 6.4e-156
Identity = 272/281 (96.80%), Postives = 272/281 (96.80%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVII DKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYP 180
            SAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 
Sbjct: 121 ASAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYQ 180

Query: 181 QSPCSSS--YGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNY 240
            SPCSSS  YGYGYGYPSSSSPSPRGAFPVHGY HGH HGH PSSPLSSSPSYFPYYTNY
Sbjct: 181 PSPCSSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYFPYYTNY 240

Query: 241 THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 280
           THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC
Sbjct: 241 THMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 281

[Close]
BLAST of CmoCh05G005290 vs. NCBI nr
Match: XP_022961977.1 (RNA-binding protein 38-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 559.3 bits (1440), Expect = 1.9e-155
Identity = 270/279 (96.77%), Postives = 270/279 (96.77%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYP 180
           TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQ         AQLYP
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQ---------AQLYP 180

Query: 181 QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTH 240
           QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTH
Sbjct: 181 QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYTH 240

Query: 241 MQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 280
           MQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC
Sbjct: 241 MQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 270

[Close]
BLAST of CmoCh05G005290 vs. NCBI nr
Match: KAG6598692.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 543.9 bits (1400), Expect = 8.1e-151
Identity = 270/289 (93.43%), Postives = 270/289 (93.43%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVII DKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120

Query: 121 TSAAAGSYGGLLT--------PYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQ 180
           TSAAAGSYGGLLT        PYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQ
Sbjct: 121 TSAAAGSYGGLLTPYPPPPSPPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQ 180

Query: 181 LQSAQLY--PQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPS 240
           LQSAQLY   QSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHG      PSSPLSSSPS
Sbjct: 181 LQSAQLYQHQQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHG------PSSPLSSSPS 240

Query: 241 YFPYYTNYTHMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 280
           YFPYYTNYTHMQQPLFYAHMHQIATPT GRQSPTETEGGASGSNTPNTC
Sbjct: 241 YFPYYTNYTHMQQPLFYAHMHQIATPTPGRQSPTETEGGASGSNTPNTC 283

[Close]
BLAST of CmoCh05G005290 vs. NCBI nr
Match: XP_022997239.1 (RNA-binding protein 38-like [Cucurbita maxima])

HSP 1 Score: 516.2 bits (1328), Expect = 1.8e-142
Identity = 256/280 (91.43%), Postives = 257/280 (91.79%), Query Frame = 0 

Query: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 60
           MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVII DKNTGKSK
Sbjct: 1   MAENFSNTHPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 60

Query: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 120
           GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNL T
Sbjct: 61  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLHT 120

Query: 121 TSAAAGSYGGLLTPYPPPP-SPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 180
           TSAAA S+GGLLTPYPPPP SPPPPQIMFPAYRYRSYAPNYTLPYHQ          QLY
Sbjct: 121 TSAAAASFGGLLTPYPPPPSSPPPPQIMFPAYRYRSYAPNYTLPYHQ---------PQLY 180

Query: 181 PQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYFPYYTNYT 240
            QSPCSSSYGY YGYPSSSS SPR AFPVHGYGHGH HG  PSSPLSSSPSYFPYYTNYT
Sbjct: 181 QQSPCSSSYGYAYGYPSSSSQSPRVAFPVHGYGHGHAHG--PSSPLSSSPSYFPYYTNYT 240

Query: 241 HMQQPLFYAHMHQIATPTTGRQSPTETEGGASGSNTPNTC 280
           HMQQPLFYAHMH IATP TGRQSPTETEGGASGSNTPNTC
Sbjct: 241 HMQQPLFYAHMHPIATPITGRQSPTETEGGASGSNTPNTC 269

[Close]
BLAST of CmoCh05G005290 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 201.8 bits (512), Expect = 7.1e-52
Identity = 125/241 (51.87%), Postives = 151/241 (62.66%), Query Frame = 0 

Query: 12  PFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYGFVTFRDPD 71
           PFGDTT+TK+FVGGLAWET +DEMR +F+QFGEILEAVII DKNTGKSKGYGFVTFR+ D
Sbjct: 10  PFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESD 69

Query: 72  SARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGN-LQTTSAAAGSYGG 131
           SA RA A+PNP+I GR+ANCNIA+FGR RP PP      GR Q G+  Q  S    +Y G
Sbjct: 70  SATRAVADPNPVIDGRKANCNIASFGRPRPSPP-----RGRGQTGSPSQYQSGGPSTYTG 129

Query: 132 LLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQSPCSSSYGY 191
           +  P PP  +   PQ+M+P+Y Y +Y P+    YHQA+YN QLQ AQ Y Q      YG 
Sbjct: 130 MAAPLPPAAA---PQLMYPSYGY-TYNPD-QFGYHQALYNTQLQQAQYYQQQ--QQLYGG 189

Query: 192 GYGYPSSSSPSPRGAFPVHGYG--------HGHGHGHDPSSPLS------SSPSYFPYYT 238
           G   PSSS  +   +   +GY           H H   P +P        SSPS+  Y +
Sbjct: 190 GATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVYPS 238

[Close]
BLAST of CmoCh05G005290 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 201.8 bits (512), Expect = 7.1e-52
Identity = 125/241 (51.87%), Postives = 151/241 (62.66%), Query Frame = 0 

Query: 12  PFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYGFVTFRDPD 71
           PFGDTT+TK+FVGGLAWET +DEMR +F+QFGEILEAVII DKNTGKSKGYGFVTFR+ D
Sbjct: 10  PFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESD 69

Query: 72  SARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGN-LQTTSAAAGSYGG 131
           SA RA A+PNP+I GR+ANCNIA+FGR RP PP      GR Q G+  Q  S    +Y G
Sbjct: 70  SATRAVADPNPVIDGRKANCNIASFGRPRPSPP-----RGRGQTGSPSQYQSGGPSTYTG 129

Query: 132 LLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQSPCSSSYGY 191
           +  P PP  +   PQ+M+P+Y Y +Y P+    YHQA+YN QLQ AQ Y Q      YG 
Sbjct: 130 MAAPLPPAAA---PQLMYPSYGY-TYNPD-QFGYHQALYNTQLQQAQYYQQQ--QQLYGG 189

Query: 192 GYGYPSSSSPSPRGAFPVHGYG--------HGHGHGHDPSSPLS------SSPSYFPYYT 238
           G   PSSS  +   +   +GY           H H   P +P        SSPS+  Y +
Sbjct: 190 GATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVYPS 238

[Close]
BLAST of CmoCh05G005290 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 179.1 bits (453), Expect = 4.9e-45
Identity = 122/246 (49.59%), Postives = 141/246 (57.32%), Query Frame = 0 

Query: 6   SNT--HPPPFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYG 65
           SNT  +  PFGDTT TK+FVGGLAWET +DEMR +F QFGEILEAVII DK TGKSKGYG
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 66  FVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGN-LQTTS 125
           FVTFRD DSA RA A+PNP+I GR+ANCNIA+FGR RP  P      GR Q G+  Q   
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTP-----RGRGQGGSPSQYQG 121

Query: 126 AAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLYPQ- 185
               SY G+  P     +    Q+M+P+Y    Y  N    YHQA+YN QLQ AQ Y Q 
Sbjct: 122 GGQSSYTGMAAPVQQAAA---AQLMYPSY---GYTYNSEYGYHQALYNAQLQQAQYYQQQ 181

Query: 186 --------SPCSSS-YGYGYGYPSSSSPSPRGAFPVH-GYGHGHGHGHDPSSPLSSSPSY 238
                   SP SS+     Y Y  + SP P      H  Y H           L S+ SY
Sbjct: 182 MYGGGGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSY 236

[Close]
BLAST of CmoCh05G005290 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-43
Identity = 106/218 (48.62%), Postives = 132/218 (60.55%), Query Frame = 0 

Query: 12  PFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYGFVTFRDPD 71
           PFGDTT+TK+FVGGLAWETQS+ +R  F+Q+GEILEAV+I DKNTG+SKGYGFVTFRDP+
Sbjct: 17  PFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPE 76

Query: 72  SARRACANPNPIICGRRANCNIAAFGRARPPPP-------PPLLLGGRNQIGNLQTTSAA 131
           +ARRACA+P PII GRRANCN+A+ GR RPP P       P  L      IGN+Q     
Sbjct: 77  AARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQ----- 136

Query: 132 AGSYGGLLTPYP---PPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQL--QSAQLY 191
            G  G L+  YP   P P      +++P Y   +Y P Y     Q +Y+P +  Q  Q+Y
Sbjct: 137 -GPRGSLIGNYPYQQPLPYNYQQGVVYP-YGVTAYGPEYMYSQSQGLYSPYMGQQYLQVY 196

Query: 192 PQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGH 218
                 +S  Y YG  S + P+  G   V GY     H
Sbjct: 197 GVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSH 227

[Close]
BLAST of CmoCh05G005290 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-42
Identity = 111/256 (43.36%), Postives = 143/256 (55.86%), Query Frame = 0 

Query: 12  PFGDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSKGYGFVTFRDPD 71
           PFGDTT+TK+FVGGLAWETQS+ +R  F Q+G+ILEAV+I DKNTG+SKGYGFVTFRDP+
Sbjct: 17  PFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPE 76

Query: 72  SARRACANPNPIICGRRANCNIAAFGRARPP--------------PPPPLLLGGRNQIGN 131
           +ARRAC +P PII GRRANCN+A+ GR+RPP              PP P        +G+
Sbjct: 77  AARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSP-------YVGS 136

Query: 132 LQTTSAA-AGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQL--Q 191
           +Q+      GS+     PY  PP+    Q +   Y    Y P+Y     Q  Y P +  Q
Sbjct: 137 VQSPRGLHFGSH-----PYHQPPTYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQ 196

Query: 192 SAQLYPQSPCSSSYGYGYGYPSSSSPSPRGAFPVHGYGHGHGHGHDPS--------SPLS 243
             Q+Y      +S GY YG  S + P        HGY  G G+ H  S        SP+S
Sbjct: 197 YLQVYGVPGAVNSPGYQYGQLSHTIPG------AHGYTAGQGYSHPGSHVLQLGATSPMS 254

The following BLAST results are available for this feature:
BLAST of CmoCh05G005290 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q621761.2e-2439.71RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2[more]
Q9H0Z93.6e-2439.22RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2[more]
Q6DIV44.4e-2238.62RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1[more]
Q76LC69.7e-2238.19RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1[more]
Q9M1S31.7e-2135.09Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S... [more]
BLAST of CmoCh05G005290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HBU22.6e-163100.00RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11146... [more]
A0A6J1HBJ19.1e-15696.77RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11146... [more]
A0A6J1KAW88.8e-14391.43RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=... [more]
A0A1S3BBB04.6e-9970.99RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1[more]
A0A0A0LLP23.3e-9770.69RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV... [more]
BLAST of CmoCh05G005290 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961976.15.4e-163100.00RNA-binding protein 38-like isoform X1 [Cucurbita moschata][more]
XP_023546076.16.4e-15696.80RNA-binding protein 38-like [Cucurbita pepo subsp. pepo][more]
XP_022961977.11.9e-15596.77RNA-binding protein 38-like isoform X2 [Cucurbita moschata][more]
KAG6598692.18.1e-15193.43putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022997239.11.8e-14291.43RNA-binding protein 38-like [Cucurbita maxima][more]
BLAST of CmoCh05G005290 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G78260.17.1e-5251.87RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G78260.27.1e-5251.87RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G22330.14.9e-4549.59RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G76460.12.1e-4348.62RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G20880.12.3e-4243.36RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 20..92
e-value: 4.7E-26
score: 102.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 21..79
e-value: 2.4E-18
score: 65.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 19..96
score: 16.721853
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..102
e-value: 9.8E-26
score: 92.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 255..279
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..226
NoneNo IPR availablePANTHERPTHR11176:SF23RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 10..250
NoneNo IPR availableCDDcd12384RRM_RBM24_RBM38_likecoord: 19..94
e-value: 2.89577E-41
score: 135.05
IPR037366BOULE/DAZ familyPANTHERPTHR11176BOULE-RELATEDcoord: 10..250
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 9..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G005290.1CmoCh05G005290.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding