CmoCh05G004930 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G004930
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RNA pseudouridine synthase 3, mitochondrial
Location	Cmo_Chr05: 2324426 .. 2332346 (-)
RNA-Seq Expression	CmoCh05G004930
Synteny	CmoCh05G004930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAGTTAGGGGACGGGAGTGAGCTCTGAAGCGCAGCATCATCTTCCATCACGAGCGAAACTGGAGACGTTGGGTATCCATATTTGATTTATAGCTTGAAGGCAGGCAAACCGACGCCCCACCTCTCGTCTGCCCTCCTCTCGCCCAGTGGTACTCTCACATCGACTTCCGTCGGTGGAGAAATAGGAGGGAGCAGTCAAAGGGGCACTTAATTTTGTTTACACTTTCCCCCTTCCATTAACGGGCGGAACTGAGCTGCGAGCATATTTGTCGGCGTTCTCTCAATCGCTGATCATCTACGGAGGTAATTTATGGGTTGTTTTTCGTCTCTGTTATTGATTAGAATCAAAATTTCCCTGTTTAGTACCATAATTTAGAGGTTGTGTCCCCAGTATTCGTTTCTGTCTCGCTCAGGACTCATCCATCAATTTTAGGATCAAACTACTAGCTGTCTAATCTTGCATAATTGATTGCCTGGTCTGCGCTAAAACTTGGCACACTTTCTCAGTCATTAAAATGATAATTGACTTCTCTGTCCGTTTTGATCAATGTTGTTGTGATTTACAAATGGCTGTGCTAAGCTTGATAGAAATTTAGCATATAAAAAAAGAAGTAAAGCTTCGAATCAGGCTGATTAGAGTACTTCATATTTGCAACAAGTAGAGATTGAATGAAAATCTCCGAGGTTGAAAATAAGGGTCACTATTGAAATTGAAATTAACACACTTGTACACAGGGAAATCGATTAAGCTACAAAAACAACCACCACTCAAGGGCTGTTTTGCTTGAAAGATTGCAGGATTATGCGGCAGAGCATACGACGACATCTTTTACTTGCAACCAGATACTACTCTAGAATTTCTCCTCCTCCACCTGCTTATGCCAGGCCTGTCATTAGAGTTTCCAACAACGTAGCGCAGTTGGGTAGTCCTAAAGAAGGCTCAAAGCCCCGGCAGCTCCTATCGCTGCCCCCATTTCCTGGCTACCCTTTGCCCAGGAAGAATCAGATTGGTTTCTCTGGGGAGTCAACTCACGTCACTGCCATAACATGGGTCAAGCATTACTTTGATGAAATTGAAGATTCTGTAATTCAGTCCCATTTCAGAAAAGGTCTTGTAAGTAAGAACACTTACTCCTCTTTTAGCCAATTGGTCTCGTTCTTTTGTCTTTTTCCTGCTATATTTATAGTTTTGTTGGCTTTTTGTAACTTTTGTAATGTCGAGAATCTCCGTCATACTTTTGAGCTGTAAGATCAGTGCTAACTTGTAAGTTGTAAATACTAATGGGAACTTAAACTCTTCTTGCTTGTTTAAAATAGTTGAGTTCCATATATAAACTTACATTGCCACTGTGGGAAAAAGTACATTGGACTTGTTTTGTTTTGGAGTTTCAGTTGGTGTCCGCGGAAAAACTGAAGTAATGACTTGCGTGTATATATGTTTAAGGATATACCACAACTTCAATGTTACTTATGAAATTGAACTCTCTCTCTCTCTCTCTCTCTCTCTTAGAAAAGCGATCGGTGGTTATCTATCCAATTCTGGGTTTAAATTTATCTTCCTTTTTCCAGGTCCAGGTGCAATGTCCACAATCAGGTGGCTTGGATGGAGAAGGAAATTTGAAACCTATGAGAAAGGTGTTGTTTCTTGAATAAATAGCCTATTATCTTATGGTTCATTTTTTAGAAGCTCCTGATATGTTGTTAGTGCGTATGTATTATCTGGTTTCATTTACTTACTGAAGTCATTCTTTGTTGGTCTATAAGGCTATTAACTCATTACCATATGACTTTCAGATTAGGAGTAATGAGATTATGGAAACTGGGGCACGAGTCCATATACCTGTGTCCGTTGCAGAGATGAGGGTTTCTAGGAGATTTGACACTATTCCAAGTGGCACATTGCACCCAAACGCGGATGAAATCAAGTATTTGCAAAGACTTGTCAAGTACAAGGCAAGTATTGAGTTTAACTTGCATTCTCCTCTTTGCTGTTTGCTGCAATTTATGTATCTCCCAGTGTTTTATCCATTGACGTACAAGAAGCAGTTGCTATATACTTGGTATGGGAAGATCCACATAGATATACTCATTTTCTTATGTACAATCAACAATGAACCTTGGTTGAGATTGATGAATGATTAATTCCCTTCTCTCTATTGCTTCATTTTATCCTGGCATGTGATTTCTGTTGTATGCTAAACATGATTTCATTTGATTGTTTATTTTGTAAATTTCAGGATTCTGCTATTCTCGTGTTAAATAAACCCCCCAGACTACCCGTCAAGGTTTACCTCGTAATCTCTTATAGTTTTCTATTTTATTTCTGGTGATCGGTGGGAAGGTGGGGTGGGAGGTAAAGTAGGTGCTCTGATATTTTGAAACAATTATGGTTTTGACAGGGGAATCTTCCAGTTCATAATAGTATGGATGCGTTGGCGGCTGCTGCATTATCTTATGATTATGATGACGGTCCCAAGTTGGTAAGCTTCTTATTCTCGTTCAAGTAACTTATGTAGATATTGTTATTAAAAGACTCTGTAATGAGAATGAAAACAGCTAAGTAATTATGTTAATGTGTCATTGATGGATACTTATGGGAATAAGAAACGAAACTTTTCATTGATGAACTGAAAACGACTAATACTCAAAGGTACAAACTCCACATATGAGTGAAAGAAAGAAAACAAAAAAATCATAAAAAGTAAGTAATCTAATGAGCATAACAAAATAGTTGTCAACCAAAGAAATCCCAAATACAGCTCTAGAAACAAAATCAAGACTAAAAACTGACAACAACAACACTTGAAGGCAGCGGCAAGAAACCAAAAGGCCGAGAATACCAGGAACCCGAATCCAAGAAGGAAAACAACCAGGAGGCAAACAAAGAGTCTGAAACTACGAGACAAGCAAAGATAAAACTCTACACTGCACTGGACACATTAAGCACTCTTCCAGAAGGAAACAAAACCGTGATATGCCAAGGGTAGGGACAAAATCAAACCTGAACACGGTTGTCATCAGCAAGAGTAGGCCGCAAGAAGTAGAAATATAGAGATTCAAATTTTCTTGGAACTGAGGAAGGATGAAGTGAAAACTCGTTGTCATAGTCCCGAAGTAAGGAAACTAGAGCTTTTGAAAAGCAATTTTCAGAAAAATCATTCAAGGTGTTATTTGTGTTGGGCAAGATGAACTCCACACTACTCACACTAACCTCTGAATCGGCATCCCAATCATCATTACCGAAAAGGAGAATTAAGAAGCTAAAGATCTGCATGAAATGTGTTATGGGAATAAGATGGGTTGATGCCGCTGCCATGGCGTTGTAATTCAATTGGAAATCTTCGTAATGTACGATAAAAGTACTTGCTACTTATAGCAATTACTGAGGTATGTATTTCCTAGACATGGGATAAATTTCGATAGATAAAGCTCCTATTTAGTGGGTTTTTCTCCATTTCGTATAGCCCGAAGCTTGGGTTTTCATTGAAAAGTTTATCCCAACTGAAGCAAGTTACACAGAAATTAAGTTTCCTCTTTATTCATTTCAAGAATTGTTTATTCCTTCAAAATAAGGACGTAGAAGCTAATGTTATTTCTTATTTTTCATCCTGTTTCATTTTTGGTTGCGTTGCTCTATATTTAATGCTCTTCCTCTGTCTATTCTTATGGATGTACATTTAGGTTCACCGTTTGGATAGAGAGAGCAGCGGGATTATCTTGATGGGGAGAACAAAGGAAAGTGTAGCCCACCTTCAATGGCTATTTAGCAATATAAGAAATGCGAAATCTTCATGTAAGGTGCTTAATAAAAAATGCATTGAAGCTTAAACGAAAACAAAGAAGAGGTTTATCTTTAAGATGTTTACCTAGTATAACTACAGCTAAGAAATGTTCTAAAATTTCTAACTTTTAATAGTTTACAATATGCTCAACAATGATTTCAGGCTTGGGACGAGGCGTGTAATGCAACATATCAAAAGTATTGGGCATTAGTAATTGGTTGTCCCAGAGAAAGAGAAGGCCTAATCTCGGCTCCCTTGTCAAAGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGGATCAATGTTAATGATTCTCAGTCTCTTCAGGTGGAGTAATGCACTCTGGAATTGTTAATAATTAGAGATCAGTATTTTCTAATAAGTTGATAATTAGACTACAATCATGTGGTTGGCAGTTGGCTTATGTGTGGATCGCTACGCCTTTAGAAACTGTTCAACATATCTTCAAGAACTTGAGAATATGGCTCAAACAAGTTTTTCAAGGATCATTTCATGTCGTTTTACTTGTGTTATAATTGTTTGTAGGTGCTTCTTGATGATGGGAAGACCGAGAGGGTTGTCTTGGCAAACAAAACATCCTTGGAAGCTTCTCAGGAGGCAATCACTGAATATCGTGTGCTTGGTCCCACAATAAATGGTTGTTCATGGATTGAACTATGCCCACGTACGAGCCGAAAGCATCAGGTACTTCAAGCTCTCTCGCTTTTCTACGAACAGGCTCATTCAAATTTATGCACGAAAATCTTAGGGATAGCTATCCTTTTGATCCATAGGTTTTTAGTCTGGTTTTGTTTTGGTCTCTCGGTTTCAAAATGTTACACTTTTACTCCTTAGTTATTGAACTTAATTTTGATCTTTGATGTTAACTTCTAGTTAATTCATTACTCATTGACACGAAAAGACCGAAATGAGTATTTAATGAAAGGAGATAAAAGTGTAAATATGGTACCAAAGGACCAAATGGAAACAAAAACTCAAAGATAAAAATGTAACATTTTGTAATCTAGAAACCGAACGAAAATTACTCGGGTAAAAGTGAACCATTTTGAAATTCAAACGAATAGAAATGATATTTTTTTCAAATCTTTTAACTGTATGATTTGCCATCTTTCAGCTACGGATCCATTGTGCTGAAGCTCTGGGCACACCTATTGTTGGCGACTACAAATACGGTTGGTTTGTACATCGGACGTGGAAACAAATGCCCCGGGTCGACATCGAGCCAATAAGTGGGAAGCCATACAAGTTGCGAAGGCCGAAAGGGTTGGATGTGCAAAAGGGGAGTGTTTTATCCAAGGTGCCCTTGTTACATCTTCATTGCAGAGAGCTTGTTCTTCCCAATTTAGCGAAGTTCCTTAATGTTTTGGATGACAAAAGGTCGATCAGCCACCACCGGGTATCTTACTTCAACTCAGATCTCTTACGTTTTGTAGCAAGAATGCCTTCCCATATGAGAATTAGCTGGAATTTGATGTCTTCCTATTTAGTATGAGTAACTTAGAGTTATCATAGGTGGATCGTAATAGGATTATTTATTCATTTGTTGTGTTTTATTTTTCGGTTAAATTATATATTTAGCGAGTGAACTTCTCTTAATCACTTTCTCACGAGACTTAGTACAATTTGAGACAGGAATGTTTGGGATGTCCTAACTATGAGGTTGGCACGTGAGTTGATTCTCGATAAGTATGTCCGAGTGAAGGTTGATGACATCCTAAGAGATGGTTTGACGAAGAGAAAAAAATCGTTATGGGATTTAAGTTACCCTTAAGGCTAAGCCGTGAATGAGTATAAATTATTACTCCATATAGTTCGAATAGTACGACATGACACAATACAGGAACAATGCACTATGTTCATGTCTCCATTATCTTGGGAATATGATGAACTATGAATCAAAATTGTAAATTATCCTATTTATTGATAATTACATTATTTATATCTTAAAAATTTATAATTAATTTAATTAAATCAAGTTGATAAGATCGAGGTGTTTCTTTATTTTTCTAAAAAATATAATTTTATTTGGATGATTTTGAGAAAAAAAATTATAATAACTAATAAATAATCTAAATTAATTCCCTAACATTATATTATTTAGGAAAAATATATCATAAAAGTATAATATAAACTTACTATATATACTTTTAAGATATAAATTTATTAATTTTAAAAATTTAATTGATAAAATAGTAAAGTTTAGGAAATATAAATGGATAATTGTTGGTATTATTATTTATTTATATATTAAAAATTAAATTGAATTTTATTATTATTTGAGAAAAGGGGAAGGAAACAAAAATTAGGCCCACGGAATCGAAGCGTTTTGAAAAATCGTAGCTTTTTGAAAAAATCGGAGCTTTTTACAGCGCACGAGGAAAGACTACGTCAAAGCTTTCAAATAGCGAAGCATTTCCATCCAACAGAACAGGCAGTTTTACCATTTTACCCTTACCCGTTGATCTCAACGGTCATCTTCCCCTCCATATATATTTCCTTGGTGCTGAATCCACCGGATTCTCCCAAACCCTTCTGGACCCACTGTTTTCCCTTTTGACCATCAAATCCCCTCCCCTGTTTTGACCCAACCCCACCGCCAGATCCGCTTCAGCCGCAACCTTCTCCATCTCGGTTCCTCTCCTTTCTGCAACCAACTACTTCTCCCCAACCCTAACAATCGACATTCATCGCCACTCTTCCATGGAGTTTGAGATCGTCTTTGACTGTCCATTCTGAGAGAGATTGACAATGGCGGAATTTGTCCTCTGCTGTAGCGATGTGCAGGATTTTGCATTCGTCTCAAAACGCTGAACCCGACGGACGATAGTTTTTGTATACGTATATATTTGTTTAGTATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTATTGCTGGGTACATTCCCACCAATATATTATTTATATATATACATTTTTAATATTCGTAGACTCCAGCGATTTGATGTTTATATGTCTGTGTATCTATAAGTCGTTTTCGTGGACCATTCTTGTCAAAGGTTGGTGAAAATGAGGTTGTCGGCAATGTCATTTACGTTTCTTTTTACTACCCTTGTGGAAATTGACTGCTTTGATTTTCACTGTGGTTCTTGCTTGGGTATTGGTGGTTTGTGATTCGTTGTTGGGTTCTTTTATCGATTAAGGGTTTCGAGAAGTCTCGATTTGGATCTGAGAATTTATTGATATATGACGTGTAATACTGGAAATATGATTGGTTGGCTGGTGAGTCCTAATTTCTACTTTGAGGCTCTTACTACACATCTCCTGTGATGTTGTAGATTATTCACAATGTATCACTCTCTTTTATACTTCTTTAATACTTTTTTGTAGTTAATAAGTGATGGTTCATTTGAAATTTAACTAAATTTCCCTTATGAATTGCATTATACTCTGGGGCTACTCCTGTACATCTCCTATGACGTTGTGTATTATTCACAATTCTGAAGTTTTTATGTTTTTTTTTTCTTTAACTAAAATGTAATTGATGCATGAACTTCATGTCTAGTCACAAGGTTAACTTATAACAGGAATGCCTCGCCTGCATTTTCTGTTGATGCTAATTTTGCTATTCTTTTGTAGGTGTATTCCTTTTAGGTATAGAAGTTCCGATGGCAGCAGTGATGAAATTTCAGATAAAGTAGTGGAGGTGCTTATGATTGACACACCTAGTGGACCGGGCCTTTTGTTCCCAAAGGTATAAGTTGTCCCCCTAACACCACACCCGAACATGTTATTTATTCCAAAATGAGGTTGCTTGCAACTTTTCAAATTTAATGAAAAGTGCTTGTTTGTTGTTAAAAAAAGAAAAAAAATGAGAATACATATATTTGATTTGAGTTTTTTACATATATAGTATCATAGTTTGCAAAATTTTCTATGTTGGGAACTTAAGGTTGAACTTCTGCTTTTTTGCTTCTCTCATATGAAGTATACAAGCTTATTTTATCTCTAATATCAGCATTTTCTTTAAAAGGGAGGCTGGGAGAATGATGAGACGGTGGAGGAGGCTGCTGTAAGGGAAGCTATTGAAGAAGCGGGTGTTCGTGGTCAACTTATGGTGAAATAG

mRNA sequence

AGGAGTTAGGGGACGGGAGTGAGCTCTGAAGCGCAGCATCATCTTCCATCACGAGCGAAACTGGAGACGTTGGGTATCCATATTTGATTTATAGCTTGAAGGCAGGCAAACCGACGCCCCACCTCTCGTCTGCCCTCCTCTCGCCCAGTGGTACTCTCACATCGACTTCCGTCGGTGGAGAAATAGGAGGGAGCAGTCAAAGGGGCACTTAATTTTGTTTACACTTTCCCCCTTCCATTAACGGGCGGAACTGAGCTGCGAGCATATTTGTCGGCGTTCTCTCAATCGCTGATCATCTACGGAGGGAAATCGATTAAGCTACAAAAACAACCACCACTCAAGGGCTGTTTTGCTTGAAAGATTGCAGGATTATGCGGCAGAGCATACGACGACATCTTTTACTTGCAACCAGATACTACTCTAGAATTTCTCCTCCTCCACCTGCTTATGCCAGGCCTGTCATTAGAGTTTCCAACAACGTAGCGCAGTTGGGTAGTCCTAAAGAAGGCTCAAAGCCCCGGCAGCTCCTATCGCTGCCCCCATTTCCTGGCTACCCTTTGCCCAGGAAGAATCAGATTGGTTTCTCTGGGGAGTCAACTCACGTCACTGCCATAACATGGGTCAAGCATTACTTTGATGAAATTGAAGATTCTGTAATTCAGTCCCATTTCAGAAAAGGTCTTGTCCAGGTGCAATGTCCACAATCAGGTGGCTTGGATGGAGAAGGAAATTTGAAACCTATGAGAAAGATTAGGAGTAATGAGATTATGGAAACTGGGGCACGAGTCCATATACCTGTGTCCGTTGCAGAGATGAGGGTTTCTAGGAGATTTGACACTATTCCAAGTGGCACATTGCACCCAAACGCGGATGAAATCAAGTATTTGCAAAGACTTGTCAATGTTTTATCCATTGACGTACAAGAAGCAGTTGCTATATACTTGGATTCTGCTATTCTCGTGTTAAATAAACCCCCCAGACTACCCGTCAAGGGGAATCTTCCAGTTCATAATAGTATGGATGCGTTGGCGGCTGCTGCATTATCTTATGATTATGATGACGGTCCCAAGTTGGCTTGGGACGAGGCGTGTAATGCAACATATCAAAAGTATTGGGCATTAGTAATTGGTTGTCCCAGAGAAAGAGAAGGCCTAATCTCGGCTCCCTTGTCAAAGGTGCTTCTTGATGATGGGAAGACCGAGAGGGTTGTCTTGGCAAACAAAACATCCTTGGAAGCTTCTCAGGAGGCAATCACTGAATATCGTGTGCTTGGTCCCACAATAAATGGTTGTTCATGGATTGAACTATGCCCACGTACGAGCCGAAAGCATCAGCTACGGATCCATTGTGCTGAAGCTCTGGGCACACCTATTGTTGGCGACTACAAATACGGTTGGTTTGTACATCGGACGTGGAAACAAATGCCCCGGGTCGACATCGAGCCAATAAGTGGGAAGCCATACAAGTTGCGAAGGCCGAAAGGGTTGGATGTGCAAAAGGGGAGTGTTTTATCCAAGGTGCCCTTGTTACATCTTCATTGCAGAGAGCTTGTTCTTCCCAATTTAGCGAAGTTCCTTAATGTTTTGGATGACAAAAGGTCGATCAGCCACCACCGGCGATGTGCAGGATTTTGCATTCGTCTCAAAACGCTGAACCCGACGGACGATAGTTTTTGTATACGTATATATTTGTTTAGTATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTATTGCTGGGTGTATTCCTTTTAGGTATAGAAGTTCCGATGGCAGCAGTGATGAAATTTCAGATAAAGTAGTGGAGGTGCTTATGATTGACACACCTAGTGGACCGGGCCTTTTGTTCCCAAAGGGAGGCTGGGAGAATGATGAGACGGTGGAGGAGGCTGCTGTAAGGGAAGCTATTGAAGAAGCGGGTGTTCGTGGTCAACTTATGGTGAAATAG

Coding sequence (CDS)

ATGCGGCAGAGCATACGACGACATCTTTTACTTGCAACCAGATACTACTCTAGAATTTCTCCTCCTCCACCTGCTTATGCCAGGCCTGTCATTAGAGTTTCCAACAACGTAGCGCAGTTGGGTAGTCCTAAAGAAGGCTCAAAGCCCCGGCAGCTCCTATCGCTGCCCCCATTTCCTGGCTACCCTTTGCCCAGGAAGAATCAGATTGGTTTCTCTGGGGAGTCAACTCACGTCACTGCCATAACATGGGTCAAGCATTACTTTGATGAAATTGAAGATTCTGTAATTCAGTCCCATTTCAGAAAAGGTCTTGTCCAGGTGCAATGTCCACAATCAGGTGGCTTGGATGGAGAAGGAAATTTGAAACCTATGAGAAAGATTAGGAGTAATGAGATTATGGAAACTGGGGCACGAGTCCATATACCTGTGTCCGTTGCAGAGATGAGGGTTTCTAGGAGATTTGACACTATTCCAAGTGGCACATTGCACCCAAACGCGGATGAAATCAAGTATTTGCAAAGACTTGTCAATGTTTTATCCATTGACGTACAAGAAGCAGTTGCTATATACTTGGATTCTGCTATTCTCGTGTTAAATAAACCCCCCAGACTACCCGTCAAGGGGAATCTTCCAGTTCATAATAGTATGGATGCGTTGGCGGCTGCTGCATTATCTTATGATTATGATGACGGTCCCAAGTTGGCTTGGGACGAGGCGTGTAATGCAACATATCAAAAGTATTGGGCATTAGTAATTGGTTGTCCCAGAGAAAGAGAAGGCCTAATCTCGGCTCCCTTGTCAAAGGTGCTTCTTGATGATGGGAAGACCGAGAGGGTTGTCTTGGCAAACAAAACATCCTTGGAAGCTTCTCAGGAGGCAATCACTGAATATCGTGTGCTTGGTCCCACAATAAATGGTTGTTCATGGATTGAACTATGCCCACGTACGAGCCGAAAGCATCAGCTACGGATCCATTGTGCTGAAGCTCTGGGCACACCTATTGTTGGCGACTACAAATACGGTTGGTTTGTACATCGGACGTGGAAACAAATGCCCCGGGTCGACATCGAGCCAATAAGTGGGAAGCCATACAAGTTGCGAAGGCCGAAAGGGTTGGATGTGCAAAAGGGGAGTGTTTTATCCAAGGTGCCCTTGTTACATCTTCATTGCAGAGAGCTTGTTCTTCCCAATTTAGCGAAGTTCCTTAATGTTTTGGATGACAAAAGGTCGATCAGCCACCACCGGCGATGTGCAGGATTTTGCATTCGTCTCAAAACGCTGAACCCGACGGACGATAGTTTTTGTATACGTATATATTTGTTTAGTATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTATTGCTGGGTGTATTCCTTTTAGGTATAGAAGTTCCGATGGCAGCAGTGATGAAATTTCAGATAAAGTAGTGGAGGTGCTTATGATTGACACACCTAGTGGACCGGGCCTTTTGTTCCCAAAGGGAGGCTGGGAGAATGATGAGACGGTGGAGGAGGCTGCTGTAAGGGAAGCTATTGAAGAAGCGGGTGTTCGTGGTCAACTTATGGTGAAATAG

Protein sequence

MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPGYPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGNLKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLSIDVQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKLAWDEACNATYQKYWALVIGCPREREGLISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLSKVPLLHLHCRELVLPNLAKFLNVLDDKRSISHHRRCAGFCIRLKTLNPTDDSFCIRIYLFSMSDLVARTGRHQQRYDAGCRLIAGCIPFRYRSSDGSSDEISDKVVEVLMIDTPSGPGLLFPKGGWENDETVEEAAVREAIEEAGVRGQLMVK

Homology

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BLAST of CmoCh05G004930 vs. ExPASy Swiss-Prot
Match: Q5XET6 (RNA pseudouridine synthase 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g78910 PE=2 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 4.9e-155
Identity = 276/451 (61.20%), Postives = 335/451 (74.28%), Query Frame = 0


Query: 8   HLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPGYPLPRKN 67
           +L +  R YSR++PPP +    VIRV+NNVA LG PK+G  PRQL+SLPPFPG+PLP KN
Sbjct: 12  YLTVLIRRYSRVAPPPSS----VIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKN 71

Query: 68  --QIGFSGES-THVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQC--PQSGGLDGEGNLK 127
               G  G+S  HVTAI+WVK+YF+EI D  IQ+HF KGLVQ++    +    + E    
Sbjct: 72  AGADGDDGDSGGHVTAISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRDASREKEDGAI 131

Query: 128 PMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLSID 187
           PMRKI+ NE+M+ G ++ +PVS+AEMR+S+R+DTIPSGTL+PNADEI YLQRLV      
Sbjct: 132 PMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRLVR----- 191

Query: 188 VQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL-------- 247
                  + DSAI+VLNKPP+LPVKGN+P+HNSMDALAAAALS+  D+GP+L        
Sbjct: 192 -------FKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRET 251

Query: 248 -------------------------------AWDEACNATYQKYWALVIGCPREREGLIS 307
                                          AW++AC A YQ+YWALVIG P+E+EGLIS
Sbjct: 252 SGLLVMGRTKESIDYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLIS 311

Query: 308 APLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLR 367
           APLSKVLLDDGKT+RVVLA  +  EASQ+AITEY+VLGP INGCSW+EL P TSRKHQLR
Sbjct: 312 APLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLR 371

Query: 368 IHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLSKV 415
           +HCAEALGTPIVGDYKYGWFVH+ WKQMP+VDIEP +GKPYKLRRP+GLDVQKGSVLSKV
Sbjct: 372 VHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKV 431

[Close]

BLAST of CmoCh05G004930 vs. ExPASy Swiss-Prot
Match: Q0J4D4 (RNA pseudouridine synthase 3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0520100 PE=2 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 3.0e-136
Identity = 248/450 (55.11%), Postives = 313/450 (69.56%), Query Frame = 0


Query: 6   RRHLLLATRYYSRISPPPPAYARP-VIRV-SNNVAQLGSPKEGSKPRQLLSLPPFP---- 65
           RR +  A R+ SR++PP PA A P V+RV  +NVA+LG PK G +PRQLLSLPPFP    
Sbjct: 5   RRRVGAAVRWLSRLAPPAPAEADPVVVRVDGSNVARLGKPKPGPRPRQLLSLPPFPGGGD 64

Query: 66  GYPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEG 125
           G PLP +     +     VTA++WVKHY  ++   V+Q+HF K LV  +C      D E 
Sbjct: 65  GDPLPGRK----AAAPRRVTAVSWVKHYLADVPQEVVQAHFNKRLVYSECS-----DHEV 124

Query: 126 NLKP-------MRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYL 185
           +++        ++KI+ N++ME G R+H+PVSVAE  + +R++TIP+ TLHPN DEI+YL
Sbjct: 125 SVETIKSQKHHLKKIKHNDVMEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYL 184

Query: 186 QRLVNVLSIDVQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGP 245
           +RLV            I+ DSAILVLNKPP++P+KGNLPVHNSMD LAAAALSY  ++GP
Sbjct: 185 RRLV------------IHKDSAILVLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGP 244

Query: 246 KL---------------------------------------AWDEACNATYQKYWALVIG 305
           KL                                        W+ AC A  Q+YWALVIG
Sbjct: 245 KLVHRLDRESSGLLLFGRTKESFTRLHWLFTSVNLAKTNSQVWNAACEAYMQRYWALVIG 304

Query: 306 CPREREGLISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELC 365
            P+EREG+ISAPLSKVLLDDGK ERV+LA+ + ++ +QEA+T YRV+GPTI+GCSWIEL 
Sbjct: 305 TPKEREGIISAPLSKVLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGPTIHGCSWIELR 364

Query: 366 PRTSRKHQLRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLD 404
           P T RKHQLR+HCAEALGTPIVGDYKYGWFVH+ WKQ P+ D EP +G+PYKLRRP+GL+
Sbjct: 365 PLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLE 424

[Close]

BLAST of CmoCh05G004930 vs. ExPASy Swiss-Prot
Match: Q9LT72 (RNA pseudouridine synthase 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g19440 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.6e-52
Identity = 127/370 (34.32%), Postives = 194/370 (52.43%), Query Frame = 0


Query: 72  SGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDG-EGNLKPMRKIRSN 131
           S +++  TA+ W+     ++  +++Q  FR  L QV+   S  +DG E     ++++ + 
Sbjct: 84  STDNSKTTALRWILRCRPDLPRTLVQKLFR--LRQVRREMSMSVDGDELQRSQLKRVAAK 143

Query: 132 EIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLSIDVQEAVAIY 191
           E +  G R+++P+SV     + +       +   + +E K++  LV            +Y
Sbjct: 144 ESLNVGDRIYLPLSVD--NDTPQTPPAKKESFQCSDEERKFVCSLV------------LY 203

Query: 192 LDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKLA--WDEACN------- 251
            D AI+VLNKP  L V+G   +  S+D LAA+ L +D  + P+L    D  C+       
Sbjct: 204 KDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLAR 263

Query: 252 -----------------------------ATYQKYWALVIGCPREREGLISAPLSKVLLD 311
                                        +  +KY ALVIGCP  + G ISAPL KV++D
Sbjct: 264 TQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVD 323

Query: 312 DGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGT 371
           DGK+ER+ + +   L ++Q AITEYRV+  + +G +W+EL P T RKHQLR+HCAE LGT
Sbjct: 324 DGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGT 383

Query: 372 PIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLSKVPLLHLHCRE 403
           PIVGDYKYGW  H+  +     +  P      +   P GLD+  G V SK P LHLH ++
Sbjct: 384 PIVGDYKYGWQAHKAREPFVSSENNPTK----QSSSPFGLDLDGGDVSSKQPHLHLHSKQ 433

[Close]

BLAST of CmoCh05G004930 vs. ExPASy Swiss-Prot
Match: Q9LHK1 (Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NUDT16 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.4e-31
Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 443 MSDLVARTGRHQQRYDAGCRLIAGCIPFRYRSSDGSSDEISDKVVEVLMIDTPSGPGLLF 502
           M DLVARTGR QQRY+ G RL+AGCIPFRY +SD   +  S KV++VLMI + SGPGLLF
Sbjct: 1   MCDLVARTGRLQQRYEDGSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLLF 60

Query: 503 PKGGWENDETVEEAAVREAIEEAGVRGQLM 533
           PKGGWENDETV EAA REA+EEAGVRG LM
Sbjct: 61  PKGGWENDETVREAAAREAVEEAGVRGILM 90

[Close]

BLAST of CmoCh05G004930 vs. ExPASy Swiss-Prot
Match: Q69K07 (RNA pseudouridine synthase 4, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0103500 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-29
Identity = 97/316 (30.70%), Postives = 149/316 (47.15%), Query Frame = 0


Query: 53  LSLPPF-------PGYPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLV 112
           L LPPF           + R    G  GE    TAI WV+    ++  S++Q  FR   V
Sbjct: 53  LQLPPFAPLDAAAAARAISRGGGEGGDGEQ-GATAIKWVRRCCPDLPTSLVQKLFRLRKV 112

Query: 113 Q--VQCPQSGGLDGEGNLKPMRKIRSNEIMETGARVHIPVSVAEMRV---SRRFDTIPSG 172
           +  V   +    D       +R++ + + +  G  + +PV++ E  V   +++FD     
Sbjct: 113 KKNVVTAEISSADASAEQHRLRRVSAKDQLMPGDILFLPVNLKESSVAEKTKKFD----- 172

Query: 173 TLHPNADEIKYLQRLVNVLSIDVQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALA 232
               N +EI +L+ L             IY D AI+V+NKPP +PV+G + + NS+D L 
Sbjct: 173 ----NRNEINFLRGL------------EIYKDEAIIVVNKPPGMPVQGGVGIKNSIDVL- 232

Query: 233 AAALSYDYDDGPKLA--WDEAC---------------------------------NATYQ 292
           A+    +  + P+L    D  C                                 +   +
Sbjct: 233 ASMFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTADALADGTQHVLQR 292

Query: 293 KYWALVIGCPREREGLISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTIN 322
           KY ALVIG PR  +GL+SAPL+K+LL DGK+ER+ +   ++  + Q+A+TEYRV+     
Sbjct: 293 KYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAASVQDALTEYRVIESCPQ 345

[Close]

BLAST of CmoCh05G004930 vs. ExPASy TrEMBL
Match: A0A6J1HAX8 (RNA pseudouridine synthase 3, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462419 PE=4 SV=1)

HSP 1 Score: 800.0 bits (2065), Expect = 5.8e-228
Identity = 401/454 (88.33%), Postives = 401/454 (88.33%), Query Frame = 0


Query: 1   MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60
           MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG
Sbjct: 1   MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60

Query: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120
           YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN
Sbjct: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120

Query: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLS 180
           LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLV    
Sbjct: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVK--- 180

Query: 181 IDVQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL------ 240
                    Y DSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL      
Sbjct: 181 ---------YKDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDR 240

Query: 241 ---------------------------------AWDEACNATYQKYWALVIGCPREREGL 300
                                            AWDEACNATYQKYWALVIGCPREREGL
Sbjct: 241 ESSGIILMGRTKESVAHLQWLFSNIRNAKSSCKAWDEACNATYQKYWALVIGCPREREGL 300

Query: 301 ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360
           ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ
Sbjct: 301 ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360

Query: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 416
           LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS
Sbjct: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 420

[Close]

BLAST of CmoCh05G004930 vs. ExPASy TrEMBL
Match: A0A6J1K8P8 (RNA pseudouridine synthase 3, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111492130 PE=4 SV=1)

HSP 1 Score: 794.7 bits (2051), Expect = 2.5e-226
Identity = 398/454 (87.67%), Postives = 398/454 (87.67%), Query Frame = 0


Query: 1   MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60
           MRQSIRRHLLLA RYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG
Sbjct: 1   MRQSIRRHLLLAARYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60

Query: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120
           YPLPRKNQIGFSGESTHVTAITWVKHYFDEI DSVIQSHFRKGLVQVQCPQSGGLDGEGN
Sbjct: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIHDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120

Query: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLS 180
           LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLV    
Sbjct: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVK--- 180

Query: 181 IDVQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL------ 240
                    Y DSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL      
Sbjct: 181 ---------YKDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDR 240

Query: 241 ---------------------------------AWDEACNATYQKYWALVIGCPREREGL 300
                                            AWDEACNATYQKYWALVIGCPREREGL
Sbjct: 241 ESSGIILMGRTKESVAHLQWLFSNIRNAKSSCKAWDEACNATYQKYWALVIGCPREREGL 300

Query: 301 ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360
           ISAPLSKVLLDDGKTERVVLANKTS EASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ
Sbjct: 301 ISAPLSKVLLDDGKTERVVLANKTSFEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360

Query: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 416
           LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS
Sbjct: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 420

[Close]

BLAST of CmoCh05G004930 vs. ExPASy TrEMBL
Match: A0A6J1BS40 (RNA pseudouridine synthase 3, mitochondrial isoform X3 OS=Momordica charantia OX=3673 GN=LOC111004890 PE=4 SV=1)

HSP 1 Score: 745.7 bits (1924), Expect = 1.3e-211
Identity = 368/453 (81.24%), Postives = 389/453 (85.87%), Query Frame = 0


Query: 1   MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60
           M+QSIRRHLLLA RYYSRISPPPPAYA+PVIRVSNN+AQLGSPKEG KPRQLLSLPPFPG
Sbjct: 1   MQQSIRRHLLLAARYYSRISPPPPAYAKPVIRVSNNIAQLGSPKEGPKPRQLLSLPPFPG 60

Query: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120
           YPLPRKN IG SG STHVTAI WVKHYFDEI DSVIQSHFRKGL+QV+CPQSGG +G+GN
Sbjct: 61  YPLPRKNHIGISGGSTHVTAINWVKHYFDEIHDSVIQSHFRKGLIQVECPQSGGSNGKGN 120

Query: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLS 180
           LKPMRKI+SNEIMETGARVHIPVSVAEM++SRRFDTIPSGTL+PNADEIKYLQRLV    
Sbjct: 121 LKPMRKIKSNEIMETGARVHIPVSVAEMKISRRFDTIPSGTLYPNADEIKYLQRLVK--- 180

Query: 181 IDVQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL------ 240
                    Y DSAI+VLNKPP+LPVKGNLPVHNSMDALAAAALSYDYD+GPKL      
Sbjct: 181 ---------YKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDR 240

Query: 241 ---------------------------------AWDEACNATYQKYWALVIGCPREREGL 300
                                            AWDEACNATYQKYWALVIGCPREREGL
Sbjct: 241 ESSGILLMGRTKESVAHLQWLFSNIRNAKSSCKAWDEACNATYQKYWALVIGCPREREGL 300

Query: 301 ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360
           ISAPLSKVLLDDGKTERVVLA+KTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ
Sbjct: 301 ISAPLSKVLLDDGKTERVVLASKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360

Query: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 415
           LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVD+E ISGKPYKLRRP+GLDVQKGSVLS
Sbjct: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDVEQISGKPYKLRRPEGLDVQKGSVLS 420

[Close]

BLAST of CmoCh05G004930 vs. ExPASy TrEMBL
Match: A0A0A0LQ04 (PseudoU_synth_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G402020 PE=4 SV=1)

HSP 1 Score: 714.9 bits (1844), Expect = 2.5e-202
Identity = 352/447 (78.75%), Postives = 377/447 (84.34%), Query Frame = 0


Query: 1   MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60
           M++S+RRHLLLATR YSRISPPPPAYA+P+IRVSNN+AQLGSPKEG K RQLLSLPPFPG
Sbjct: 73  MQRSMRRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPG 132

Query: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120
           YPLP KNQ+G SGESTHVTAI WVK+YFDEI+DS IQSHFRKGLVQV+CPQ GGLD +GN
Sbjct: 133 YPLPGKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLGGLDEKGN 192

Query: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLS 180
           LKPMRKIRS EIMETGAR+H+PVSVAEM+V+RRFDTIPSGTL+PNADEIKYLQRLV    
Sbjct: 193 LKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVK--- 252

Query: 181 IDVQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL------ 240
                    Y DSAI+VLNKPP+LPVKG LPVHNSMDALA AALSYDYDDGPKL      
Sbjct: 253 ---------YKDSAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDR 312

Query: 241 ---------------------------------AWDEACNATYQKYWALVIGCPREREGL 300
                                            AW+EACNATYQKYWALVIGCPREREG+
Sbjct: 313 ESSGILLMGRTKESVDHLQWLFSNIRNAKFTCKAWEEACNATYQKYWALVIGCPREREGV 372

Query: 301 ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360
           ISAPLSKVLLDDGKTERVVLANK S+EASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ
Sbjct: 373 ISAPLSKVLLDDGKTERVVLANKASIEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 432

Query: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 409
           LRIHCAEALGTPIVGDYKYGWFVHR WKQMPRVD+EPISG+PYKLRRP+GLDVQKGSVLS
Sbjct: 433 LRIHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDVEPISGRPYKLRRPEGLDVQKGSVLS 492

[Close]

BLAST of CmoCh05G004930 vs. ExPASy TrEMBL
Match: A0A1S3B3J4 (RNA pseudouridine synthase 3, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485411 PE=4 SV=1)

HSP 1 Score: 714.1 bits (1842), Expect = 4.2e-202
Identity = 356/452 (78.76%), Postives = 377/452 (83.41%), Query Frame = 0


Query: 1   MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60
           M++SIRRHLLLATRYYSRISPPPPAYA+P+IRVSNN+AQLGSPKEG K RQLLSLPPFPG
Sbjct: 1   MQRSIRRHLLLATRYYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPG 60

Query: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120
           +PLP KNQ+G SGESTHVTAI WVK+YFDEI+DS IQS FRKGLVQV+CPQ GG D  GN
Sbjct: 61  HPLPGKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSLFRKGLVQVECPQLGGFDENGN 120

Query: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLS 180
           LKPMRKIRS EIME GAR+H+PVSVAEM+VSRRFDTIPSGTL+PNADEIKYLQRLV    
Sbjct: 121 LKPMRKIRSGEIMEIGARIHLPVSVAEMKVSRRFDTIPSGTLYPNADEIKYLQRLVK--- 180

Query: 181 IDVQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL------ 240
                    Y DSAI+VLNKPP+LPVKG LPVHNSMDALAAAALSYDYD GPKL      
Sbjct: 181 ---------YKDSAIIVLNKPPKLPVKGTLPVHNSMDALAAAALSYDYDYGPKLVHRLDR 240

Query: 241 ---------------------------------AWDEACNATYQKYWALVIGCPREREGL 300
                                            AW+EACNATYQKYWALVIG PREREGL
Sbjct: 241 ESSGILLMGRTKESVDHLQWLFSNIRNGKFTCKAWEEACNATYQKYWALVIGRPREREGL 300

Query: 301 ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360
           ISAPLSKVLLDDGKTERVVLANK SLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ
Sbjct: 301 ISAPLSKVLLDDGKTERVVLANKASLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360

Query: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 414
           LRIHCAEALGTPIVGDYKYGWFVHR WKQMPRVD+EPISG+PYKLRRP+GLDVQKGSVLS
Sbjct: 361 LRIHCAEALGTPIVGDYKYGWFVHRRWKQMPRVDVEPISGRPYKLRRPEGLDVQKGSVLS 420

[Close]

BLAST of CmoCh05G004930 vs. NCBI nr
Match: KAG6598656.1 (RNA pseudouridine synthase 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 951.8 bits (2459), Expect = 2.5e-273
Identity = 484/571 (84.76%), Postives = 485/571 (84.94%), Query Frame = 0


Query: 1   MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60
           MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG
Sbjct: 56  MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 115

Query: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120
           YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN
Sbjct: 116 YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN 175

Query: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLS 180
           LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLV    
Sbjct: 176 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVK--- 235

Query: 181 IDVQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL------ 240
                    Y DSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL      
Sbjct: 236 ---------YKDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDR 295

Query: 241 ---------------------------------AWDEACNATYQKYWALVIGCPREREGL 300
                                            AWDEACNATYQKYWALVIGCPREREGL
Sbjct: 296 ESSGIILMGRTKESVAHLQWLFSNIRNAKSSCKAWDEACNATYQKYWALVIGCPREREGL 355

Query: 301 ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360
           ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ
Sbjct: 356 ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 415

Query: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 420
           LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS
Sbjct: 416 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 475

Query: 421 KVPLLHLHCRELVLPNLAKFLNVLDDKRSISHHRRCAGFCIRLKTLNPTDDSFCIRIYLF 480
           KVPLLHLHCRELVLPNLAKFLNVLDDK                                 
Sbjct: 476 KVPLLHLHCRELVLPNLAKFLNVLDDK--------------------------------- 535

Query: 481 SMSDLVARTGRHQQRYDAGCRLIAGCIPFRYRSSDGSSDEISDKVVEVLMIDTPSGPGLL 533
           SMSDLVARTGRHQQRYDAGCRLIAGCIPFRYRSSDGSSDE+SDKVVEVLMIDTPSGPGLL
Sbjct: 536 SMSDLVARTGRHQQRYDAGCRLIAGCIPFRYRSSDGSSDEVSDKVVEVLMIDTPSGPGLL 581

[Close]

BLAST of CmoCh05G004930 vs. NCBI nr
Match: XP_022961737.1 (RNA pseudouridine synthase 3, mitochondrial [Cucurbita moschata] >XP_022961738.1 RNA pseudouridine synthase 3, mitochondrial [Cucurbita moschata])

HSP 1 Score: 800.0 bits (2065), Expect = 1.2e-227
Identity = 401/454 (88.33%), Postives = 401/454 (88.33%), Query Frame = 0


Query: 1   MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60
           MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG
Sbjct: 1   MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60

Query: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120
           YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN
Sbjct: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120

Query: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLS 180
           LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLV    
Sbjct: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVK--- 180

Query: 181 IDVQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL------ 240
                    Y DSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL      
Sbjct: 181 ---------YKDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDR 240

Query: 241 ---------------------------------AWDEACNATYQKYWALVIGCPREREGL 300
                                            AWDEACNATYQKYWALVIGCPREREGL
Sbjct: 241 ESSGIILMGRTKESVAHLQWLFSNIRNAKSSCKAWDEACNATYQKYWALVIGCPREREGL 300

Query: 301 ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360
           ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ
Sbjct: 301 ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360

Query: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 416
           LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS
Sbjct: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 420

[Close]

BLAST of CmoCh05G004930 vs. NCBI nr
Match: XP_022997125.1 (RNA pseudouridine synthase 3, mitochondrial [Cucurbita maxima] >XP_022997126.1 RNA pseudouridine synthase 3, mitochondrial [Cucurbita maxima])

HSP 1 Score: 794.7 bits (2051), Expect = 5.1e-226
Identity = 398/454 (87.67%), Postives = 398/454 (87.67%), Query Frame = 0


Query: 1   MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60
           MRQSIRRHLLLA RYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG
Sbjct: 1   MRQSIRRHLLLAARYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60

Query: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120
           YPLPRKNQIGFSGESTHVTAITWVKHYFDEI DSVIQSHFRKGLVQVQCPQSGGLDGEGN
Sbjct: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIHDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120

Query: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLS 180
           LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLV    
Sbjct: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVK--- 180

Query: 181 IDVQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL------ 240
                    Y DSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL      
Sbjct: 181 ---------YKDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDR 240

Query: 241 ---------------------------------AWDEACNATYQKYWALVIGCPREREGL 300
                                            AWDEACNATYQKYWALVIGCPREREGL
Sbjct: 241 ESSGIILMGRTKESVAHLQWLFSNIRNAKSSCKAWDEACNATYQKYWALVIGCPREREGL 300

Query: 301 ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360
           ISAPLSKVLLDDGKTERVVLANKTS EASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ
Sbjct: 301 ISAPLSKVLLDDGKTERVVLANKTSFEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360

Query: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 416
           LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS
Sbjct: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 420

[Close]

BLAST of CmoCh05G004930 vs. NCBI nr
Match: XP_023545207.1 (RNA pseudouridine synthase 3, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023545209.1 RNA pseudouridine synthase 3, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 784.3 bits (2024), Expect = 6.9e-223
Identity = 395/454 (87.00%), Postives = 395/454 (87.00%), Query Frame = 0


Query: 1   MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60
           M QSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGS KEGSKPRQLLSLPPFPG
Sbjct: 1   MWQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSRKEGSKPRQLLSLPPFPG 60

Query: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120
           YPLPRKNQIGFSGESTHVTAITWVKHYFDEI DSVIQSHFRKGLVQVQCPQSGGLDGEGN
Sbjct: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIHDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120

Query: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLS 180
           LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLV    
Sbjct: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVK--- 180

Query: 181 IDVQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL------ 240
                    Y DSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL      
Sbjct: 181 ---------YKDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDR 240

Query: 241 ---------------------------------AWDEACNATYQKYWALVIGCPREREGL 300
                                            AW EACNATYQKYWALVIGCPREREGL
Sbjct: 241 ESSGIILMGRTKESVAHLQWLFSNIRNAKSSCKAWGEACNATYQKYWALVIGCPREREGL 300

Query: 301 ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360
           ISAPLSKVLLDDGKTERVVLANKTSLEA QEAITEYRVLGPTINGCSWIELCPRTSRKHQ
Sbjct: 301 ISAPLSKVLLDDGKTERVVLANKTSLEAFQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360

Query: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 416
           LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS
Sbjct: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 420

[Close]

BLAST of CmoCh05G004930 vs. NCBI nr
Match: XP_022131827.1 (RNA pseudouridine synthase 3, mitochondrial isoform X3 [Momordica charantia])

HSP 1 Score: 745.7 bits (1924), Expect = 2.7e-211
Identity = 368/453 (81.24%), Postives = 389/453 (85.87%), Query Frame = 0


Query: 1   MRQSIRRHLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPG 60
           M+QSIRRHLLLA RYYSRISPPPPAYA+PVIRVSNN+AQLGSPKEG KPRQLLSLPPFPG
Sbjct: 1   MQQSIRRHLLLAARYYSRISPPPPAYAKPVIRVSNNIAQLGSPKEGPKPRQLLSLPPFPG 60

Query: 61  YPLPRKNQIGFSGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDGEGN 120
           YPLPRKN IG SG STHVTAI WVKHYFDEI DSVIQSHFRKGL+QV+CPQSGG +G+GN
Sbjct: 61  YPLPRKNHIGISGGSTHVTAINWVKHYFDEIHDSVIQSHFRKGLIQVECPQSGGSNGKGN 120

Query: 121 LKPMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLS 180
           LKPMRKI+SNEIMETGARVHIPVSVAEM++SRRFDTIPSGTL+PNADEIKYLQRLV    
Sbjct: 121 LKPMRKIKSNEIMETGARVHIPVSVAEMKISRRFDTIPSGTLYPNADEIKYLQRLVK--- 180

Query: 181 IDVQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL------ 240
                    Y DSAI+VLNKPP+LPVKGNLPVHNSMDALAAAALSYDYD+GPKL      
Sbjct: 181 ---------YKDSAIIVLNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDR 240

Query: 241 ---------------------------------AWDEACNATYQKYWALVIGCPREREGL 300
                                            AWDEACNATYQKYWALVIGCPREREGL
Sbjct: 241 ESSGILLMGRTKESVAHLQWLFSNIRNAKSSCKAWDEACNATYQKYWALVIGCPREREGL 300

Query: 301 ISAPLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360
           ISAPLSKVLLDDGKTERVVLA+KTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ
Sbjct: 301 ISAPLSKVLLDDGKTERVVLASKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQ 360

Query: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLS 415
           LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVD+E ISGKPYKLRRP+GLDVQKGSVLS
Sbjct: 361 LRIHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDVEQISGKPYKLRRPEGLDVQKGSVLS 420

[Close]

BLAST of CmoCh05G004930 vs. TAIR 10
Match: AT1G78910.1 (Pseudouridine synthase family protein )

HSP 1 Score: 549.3 bits (1414), Expect = 3.5e-156
Identity = 276/451 (61.20%), Postives = 335/451 (74.28%), Query Frame = 0


Query: 8   HLLLATRYYSRISPPPPAYARPVIRVSNNVAQLGSPKEGSKPRQLLSLPPFPGYPLPRKN 67
           +L +  R YSR++PPP +    VIRV+NNVA LG PK+G  PRQL+SLPPFPG+PLP KN
Sbjct: 12  YLTVLIRRYSRVAPPPSS----VIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKN 71

Query: 68  --QIGFSGES-THVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQC--PQSGGLDGEGNLK 127
               G  G+S  HVTAI+WVK+YF+EI D  IQ+HF KGLVQ++    +    + E    
Sbjct: 72  AGADGDDGDSGGHVTAISWVKYYFEEIYDKAIQTHFTKGLVQMEFRGRRDASREKEDGAI 131

Query: 128 PMRKIRSNEIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLSID 187
           PMRKI+ NE+M+ G ++ +PVS+AEMR+S+R+DTIPSGTL+PNADEI YLQRLV      
Sbjct: 132 PMRKIKHNEVMQIGDKIWLPVSIAEMRISKRYDTIPSGTLYPNADEIAYLQRLVR----- 191

Query: 188 VQEAVAIYLDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKL-------- 247
                  + DSAI+VLNKPP+LPVKGN+P+HNSMDALAAAALS+  D+GP+L        
Sbjct: 192 -------FKDSAIIVLNKPPKLPVKGNVPIHNSMDALAAAALSFGNDEGPRLVHRLDRET 251

Query: 248 -------------------------------AWDEACNATYQKYWALVIGCPREREGLIS 307
                                          AW++AC A YQ+YWALVIG P+E+EGLIS
Sbjct: 252 SGLLVMGRTKESIDYLHSVFSDYKGRNSSCKAWNKACEAMYQQYWALVIGSPKEKEGLIS 311

Query: 308 APLSKVLLDDGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLR 367
           APLSKVLLDDGKT+RVVLA  +  EASQ+AITEY+VLGP INGCSW+EL P TSRKHQLR
Sbjct: 312 APLSKVLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLR 371

Query: 368 IHCAEALGTPIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLSKV 415
           +HCAEALGTPIVGDYKYGWFVH+ WKQMP+VDIEP +GKPYKLRRP+GLDVQKGSVLSKV
Sbjct: 372 VHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVLSKV 431

[Close]

BLAST of CmoCh05G004930 vs. TAIR 10
Match: AT3G19440.1 (Pseudouridine synthase family protein )

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-53
Identity = 127/370 (34.32%), Postives = 194/370 (52.43%), Query Frame = 0


Query: 72  SGESTHVTAITWVKHYFDEIEDSVIQSHFRKGLVQVQCPQSGGLDG-EGNLKPMRKIRSN 131
           S +++  TA+ W+     ++  +++Q  FR  L QV+   S  +DG E     ++++ + 
Sbjct: 84  STDNSKTTALRWILRCRPDLPRTLVQKLFR--LRQVRREMSMSVDGDELQRSQLKRVAAK 143

Query: 132 EIMETGARVHIPVSVAEMRVSRRFDTIPSGTLHPNADEIKYLQRLVNVLSIDVQEAVAIY 191
           E +  G R+++P+SV     + +       +   + +E K++  LV            +Y
Sbjct: 144 ESLNVGDRIYLPLSVD--NDTPQTPPAKKESFQCSDEERKFVCSLV------------LY 203

Query: 192 LDSAILVLNKPPRLPVKGNLPVHNSMDALAAAALSYDYDDGPKLA--WDEACN------- 251
            D AI+VLNKP  L V+G   +  S+D LAA+ L +D  + P+L    D  C+       
Sbjct: 204 KDPAIIVLNKPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLAR 263

Query: 252 -----------------------------ATYQKYWALVIGCPREREGLISAPLSKVLLD 311
                                        +  +KY ALVIGCP  + G ISAPL KV++D
Sbjct: 264 TQTAATVLHSIFREKTTGASAYGVKKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVD 323

Query: 312 DGKTERVVLANKTSLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGT 371
           DGK+ER+ + +   L ++Q AITEYRV+  + +G +W+EL P T RKHQLR+HCAE LGT
Sbjct: 324 DGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGT 383

Query: 372 PIVGDYKYGWFVHRTWKQMPRVDIEPISGKPYKLRRPKGLDVQKGSVLSKVPLLHLHCRE 403
           PIVGDYKYGW  H+  +     +  P      +   P GLD+  G V SK P LHLH ++
Sbjct: 384 PIVGDYKYGWQAHKAREPFVSSENNPTK----QSSSPFGLDLDGGDVSSKQPHLHLHSKQ 433

[Close]

BLAST of CmoCh05G004930 vs. TAIR 10
Match: AT3G12600.1 (nudix hydrolase homolog 16 )

HSP 1 Score: 137.5 bits (345), Expect = 3.1e-32
Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 443 MSDLVARTGRHQQRYDAGCRLIAGCIPFRYRSSDGSSDEISDKVVEVLMIDTPSGPGLLF 502
           M DLVARTGR QQRY+ G RL+AGCIPFRY +SD   +  S KV++VLMI + SGPGLLF
Sbjct: 1   MCDLVARTGRLQQRYEDGSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLLF 60

Query: 503 PKGGWENDETVEEAAVREAIEEAGVRGQLM 533
           PKGGWENDETV EAA REA+EEAGVRG LM
Sbjct: 61  PKGGWENDETVREAAAREAVEEAGVRGILM 90

[Close]

BLAST of CmoCh05G004930 vs. TAIR 10
Match: AT3G12600.2 (nudix hydrolase homolog 16 )

HSP 1 Score: 120.2 bits (300), Expect = 5.2e-27
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 454 QQRYDAGCRLIAGCIPFRYRSSDGSSDEISDKVVEVLMIDTPSGPGLLFPKGGWENDETV 513
           +QRY+ G RL+AGCIPFRY +SD   +  S KV++VLMI + SGPGLLFPKGGWENDETV
Sbjct: 3   EQRYEDGSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISSSSGPGLLFPKGGWENDETV 62

Query: 514 EEAAVREAIEEAGVRGQLM 533
            EAA REA+EEAGVRG LM
Sbjct: 63  REAAAREAVEEAGVRGILM 81

[Close]

BLAST of CmoCh05G004930 vs. TAIR 10
Match: AT1G18300.1 (nudix hydrolase homolog 4 )

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-21
Identity = 48/90 (53.33%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 446 LVARTGRHQQRYD-AGCRLIAGCIPFRYRSSDGSSDEISDKVVEVLMIDTPSGPGLLFPK 505
           LV+RTGR  QRYD AG R + GC+P+RY+  + +   +  +V++VL++    G G+LFPK
Sbjct: 43  LVSRTGRDLQRYDHAGYRQVVGCVPYRYKKQEVNG--VETQVIQVLLVSAQKGKGMLFPK 102

Query: 506 GGWENDETVEEAAVREAIEEAGVRGQLMVK 535
           GGWE DE++EEAA+RE IEEAGV G+L  K
Sbjct: 103 GGWETDESMEEAALRETIEEAGVTGELEEK 130

The following BLAST results are available for this feature:

BLAST of CmoCh05G004930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XET6	4.9e-155	61.20	RNA pseudouridine synthase 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q0J4D4	3.0e-136	55.11	RNA pseudouridine synthase 3, mitochondrial OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9LT72	1.6e-52	34.32	RNA pseudouridine synthase 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q9LHK1	4.4e-31	73.33	Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NUDT16 PE=2...	[more]
Q69K07	1.1e-29	30.70	RNA pseudouridine synthase 4, mitochondrial OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of CmoCh05G004930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAX8	5.8e-228	88.33	RNA pseudouridine synthase 3, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1K8P8	2.5e-226	87.67	RNA pseudouridine synthase 3, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1BS40	1.3e-211	81.24	RNA pseudouridine synthase 3, mitochondrial isoform X3 OS=Momordica charantia OX...	[more]
A0A0A0LQ04	2.5e-202	78.75	PseudoU_synth_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G40...	[more]
A0A1S3B3J4	4.2e-202	78.76	RNA pseudouridine synthase 3, mitochondrial isoform X1 OS=Cucumis melo OX=3656 G...	[more]

BLAST of CmoCh05G004930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598656.1	2.5e-273	84.76	RNA pseudouridine synthase 3, mitochondrial, partial [Cucurbita argyrosperma sub...	[more]
XP_022961737.1	1.2e-227	88.33	RNA pseudouridine synthase 3, mitochondrial [Cucurbita moschata] >XP_022961738.1...	[more]
XP_022997125.1	5.1e-226	87.67	RNA pseudouridine synthase 3, mitochondrial [Cucurbita maxima] >XP_022997126.1 R...	[more]
XP_023545207.1	6.9e-223	87.00	RNA pseudouridine synthase 3, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023...	[more]
XP_022131827.1	2.7e-211	81.24	RNA pseudouridine synthase 3, mitochondrial isoform X3 [Momordica charantia]	[more]

BLAST of CmoCh05G004930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78910.1	3.5e-156	61.20	Pseudouridine synthase family protein	[more]
AT3G19440.1	1.1e-53	34.32	Pseudouridine synthase family protein	[more]
AT3G12600.1	3.1e-32	73.33	nudix hydrolase homolog 16	[more]
AT3G12600.2	5.2e-27	70.89	nudix hydrolase homolog 16	[more]
AT1G18300.1	1.1e-21	53.33	nudix hydrolase homolog 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 447..533 e-value: 6.7E-15 score: 57.0
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 233..401 e-value: 3.7E-27 score: 97.3
None	No IPR available	PANTHER	PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	coord: 240..412 coord: 6..234
None	No IPR available	PANTHER	PTHR21600:SF53	RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL	coord: 240..412 coord: 6..234
IPR006145	Pseudouridine synthase, RsuA/RluA-like	PFAM	PF00849	PseudoU_synth_2	coord: 245..327 e-value: 1.4E-9 score: 38.2
IPR006145	Pseudouridine synthase, RsuA/RluA-like	CDD	cd02869	PseudoU_synth_RluA_like	coord: 195..341 e-value: 1.10042E-25 score: 102.03
IPR000086	NUDIX hydrolase domain	PFAM	PF00293	NUDIX	coord: 489..529 e-value: 2.2E-7 score: 31.0
IPR000086	NUDIX hydrolase domain	PROSITE	PS51462	NUDIX	coord: 460..534 score: 9.659925
IPR020084	NUDIX hydrolase, conserved site	PROSITE	PS00893	NUDIX_BOX	coord: 505..526
IPR015797	NUDIX hydrolase-like domain superfamily	SUPERFAMILY	55811	Nudix	coord: 441..530
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 184..399

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G004930.1	CmoCh05G004930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding