CmoCh05G004730 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G004730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein root UVB sensitive 3
Location	Cmo_Chr05: 2209491 .. 2213288 (+)
RNA-Seq Expression	CmoCh05G004730
Synteny	CmoCh05G004730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGCATGGCGATTGGTATGCTTCTTGCTCGTATTACCATGGGATGCCCACTGGCCATCTGGCTTTCTTTTCTATCTCTCACGTTGTTCCATATGTACGGTGAGTTATTTGCTTGAACAAACCCTCGGTTTATAGTATATGTTGACGTGACATTTAGTTTTTAAATTTCTGAATTGGTAAGAGTTCAAATTTTAGACCATCATCTCTTATGAACACATTGTTAACTTTTCTTCATCAAATTTTCTTAATAGTATTTTAGGTTCAAAATGTTTATTCGTCTACATAAAAAGAAAAAAGATGGAAAAATATATATTTATGTAGTCATGGTAGATTTCAAACATGCCTTGGTAGGTCTGTCACAATTTTGTAAAATTCTGCTTGTGAATTTGTGCAGCAAATTACAAGGCTGTTTGCTGCCTTTCCTTGACTTCACTCAACCCTCAGAGGTGTTCAATTGCTTTGCAGCATTTTATTCAGACAGGCCAAGGTGATGCCCGATGTCTTTATTCTTTCCTGTTGTTACTGATCATGATTCATTTCCTGGATGGTTCAGGGCTATTTGTACGTATGTACACTGTAAATTCCACTCACACGCGTTAATATGTGATTTATGCGACAAAACTATTTTTAAATCTACCTCTTTCTGCGATAAATAAAAATTGCTGCACTCTAATCTCTTTGTTTAAATAAAAGTTACCATGCGACTGAACCTGCATTCAGTTCTCTCTCCTCAACAGGTTTCTAAGATGGAGCATGTTTTACCCACATGGGTTTCTTCATGGAGTTTAAGGAGTATTAAGTTAATCCATACACGTGTAAGATTAGGAGAGAGGATCTCTTCACTTCATCACTCAGAAATGTGAGTTTTTACATACCAGCTTTTTGACTTGCTTGATCTTTTTTTTTTTCTTTTCTTATTATTTAGATAAGAAGAAGACATCCATTTGACAAATAAATGACAAAGAAGCAGGTTAAGCCAAAGTGTTATAAAAAAGGGTTTCAAATGGACAAGTTTTGGATGCAATAATTACAAGACTCAATATTGAAAGAACTCCCAAGATTTTAAAATGCTGGCATATGTGGAAGCGAAAATAGAAGTGGTTGTATATGTACTATTGTTTACATTAAAAAATAAATAAATAAACTAGCAACACGATACTCCTTAAATAGATCAATCAAATATGGTTTATCATTAGGATTTAGGCAATATAGTACGTCCGTTGCAAGTGTAAAGAAATTTACTTTTATTTAAAGAACACATGCGATTGGAAGACTGAAGTTTGTCTGGTTATCTGTCATAGTTTTTCTTTCCACAGTTCATAAAACTGATATATAGCTAATAACATTATTTTGGTATAGGAAGGAGCTGTTGCAATTGGCAGGTGCCAATAGTAACAAAGGTTGGAGTACTTTTAAATATTTTCCGAAAGATAGGTTTGAGCTGTATTTTATAACTCCATCTGATCATATGTTATTCGTTTTCCAGTGAAGTACCTTCTAATGGAGAGGAAGTCCATTATCTGTGTTATTGTGCGAAAAGATGCAACTGCTAATGACATCTTCCAATCATTCTTTCATGCACTTGTTACGGCTTATGTTCCTGATCAGGCGTCTAGGCATTTGGAAAGCCTGTCGTGGATGGACAAACATTATGAAGATTTTATTCAAAAGGTTTTTTTTTTTTTTTTTTCTCTTTAATGTTTCTGAACTTCATTAAGTTGCAAATTTTCTCTTCCGTTCTTCTTTTCTTAGCCTTTTCTTTTTGGTTATAAAAAATGATAAATTTTCATTAATTTTTTGAGAAAATGATACGAAAAACTTCCCCAAAAGTAACTCACAAAAAACCACTTCAACAAGACTGCAAGAATTAATTAAAGAACGGTTGAAATTTAGCAAACGGTCCAAATCTAATCTTAATCTCGTCTCTTCTCGCTATAATTTATAAGGTGTCCTTTCATCGAACTCCCAGTAGGCAGCTTTTTGTTTTACTCCCACAACATTTGCCTTTTCCCGGTGGTTCAACTGTTCAACTGTTCTCCCAATTAGCGGAGTATATACATAAAGCCTGTTTAAATTTAAACCTTGAGCCTTTGGCTGAAGGGATGGAGAAAAAGGAGTTGATCCTTTTGTTAGGAATCACGACCCTCCACAATAATATGATATTGTCCACTTTAAACATAAGCTCTCATGACTTTGCTTTAGGCTTCTCCAAAAGGCCTCGTACCAATGGAGATGTATTTCTCACTTATAAACTCATGATCTAGCTGATGTGAGACCCTTCTTCCAACAATCCTCACTCCTTTTAATCATTATTCACATATAGAGGACACTAGTCTGGAAGCAAAACCATCTAGAGCAGAACCATTCTCAAATGGTACCTACATTTGATCCTACCATCCATAGCCATAGCCTAAAAAAGAGAGAAAGTGATAGAGAGAGAATGTCTGCCCGTTCAGAATTCCAGATACATGGATGCATGAATTGCATCGTAGGAAGATATTACTTGCCAACACGTTACGTATGGGAAAAATCATGCTTTTCTTTGAAGCTTGCTATAGTTATCTGTAAATTGGAATAGAGTTGGAACTATATGCCTTGGACTTCTGTACATTCTTTCATATAGAGTACAATTCTCAGCCACATGTGATGATATTTTCATTACTTTACATTCGGTATATTTATAATTTTCATTGCATTTACACCATTCAATTACCTTTTAGCTGAAGCTATCGGGTTGGAAGACAGATCGTCTACTTTCTCCGTCAGTTTGTTGGAGAGCCAACTGGGTCTGCAGTCCCAGAGATGAGAAAATTGACTAAACCTCAGTGGTCACTAACCATAAAAGAGCAGCACAAGGAGGTACCCACTAATATAAACTGTTTCAAATTCAGCCACACTCTGTGGCATATTCACAATATTGGTTGATACTCCCTGCTTGTGAATGGTGCAAATCTGAAAAGTATTGTCAATATGCTGTTTATGGCCTTGATAGTTTTTAAACAGCACCATGCAAATCTGCTTGTGACCTTATAGCTTTTAATGAACCATATAAACCGCACTCATATGATTATGCTTTCTGATATTCTGCCACTGGATTCATTCTGACTTTATAGTTTATGATGAACCTTATAAACAGCACTCATTTGATTATGCTTTCTGATATTCTGCCACTGGATTCATTCTGACCTTATAGTTTTTAATCAACCTTATGAACAACACTAATTTGATTATGATATTTTGCCACTGGATTCATTCTGACCTTATAGTTTATAATGAACCTTATGAACCGCACTCATTTGATTATGCTTTCTGATATTCTGCCACTGGATTCATTTGACCTTATAGTCTTTAATCAACCCTATGAACTACACTCATTTGATTATGATATTCTGCCACTGGATTCATTCTGACCTTATAGTGTATAGTGAACCTTATGAACAACACTCATTTGATTATGCTTTCTGATATTCTGCCACCGGTTGTTTCTTTTTTATAAAACTTGGCTGCAAACTTTTGATGAGTATGCATTAATTCTTCTTGCAATTATGCATTTAAGCTTGCAGTTAAATATAAAACAGGTTAGGAGCTCTCTCTAAGAAGATAAACTCGTTCAAAGTGCTGGGGGCAGTCTCAAGAGCTGATCAATATTCCTACAGAAAATCACGCTTACATTTATGCTCAATCCTGTAGTATTAGAAAACCATGACCAATTTTTATATTCAAGAGTGGCTATCTTTTCCATTTTTACTCATTTCTTTTCGAGTCTGCAGCTTGAAACGGACCGATATTGTTGA

mRNA sequence

ATGGTAGGCATGGCGATTGGTATGCTTCTTGCTCGTATTACCATGGGATGCCCACTGGCCATCTGGCTTTCTTTTCTATCTCTCACGTTGTTCCATATGTACGCAAATTACAAGGCTGTTTGCTGCCTTTCCTTGACTTCACTCAACCCTCAGAGGTGTTCAATTGCTTTGCAGCATTTTATTCAGACAGGCCAAGTGAAGTACCTTCTAATGGAGAGGAAGTCCATTATCTGTGTTATTGTGCGAAAAGATGCAACTGCTAATGACATCTTCCAATCATTCTTTCATGCACTTGTTACGGCTTATGTTCCTGATCAGGCGTCTAGGCATTTGGAAAGCCTGTCGTGGATGGACAAACATTATGAAGATTTTATTCAAAAGTTTGTTGGAGAGCCAACTGGGTCTGCAGTCCCAGAGATGAGAAAATTGACTAAACCTCAGTGGTCACTAACCATAAAAGAGCAGCACAAGGAGCTTGAAACGGACCGATATTGTTGA

Coding sequence (CDS)

ATGGTAGGCATGGCGATTGGTATGCTTCTTGCTCGTATTACCATGGGATGCCCACTGGCCATCTGGCTTTCTTTTCTATCTCTCACGTTGTTCCATATGTACGCAAATTACAAGGCTGTTTGCTGCCTTTCCTTGACTTCACTCAACCCTCAGAGGTGTTCAATTGCTTTGCAGCATTTTATTCAGACAGGCCAAGTGAAGTACCTTCTAATGGAGAGGAAGTCCATTATCTGTGTTATTGTGCGAAAAGATGCAACTGCTAATGACATCTTCCAATCATTCTTTCATGCACTTGTTACGGCTTATGTTCCTGATCAGGCGTCTAGGCATTTGGAAAGCCTGTCGTGGATGGACAAACATTATGAAGATTTTATTCAAAAGTTTGTTGGAGAGCCAACTGGGTCTGCAGTCCCAGAGATGAGAAAATTGACTAAACCTCAGTGGTCACTAACCATAAAAGAGCAGCACAAGGAGCTTGAAACGGACCGATATTGTTGA

Protein sequence

MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQVKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQKFVGEPTGSAVPEMRKLTKPQWSLTIKEQHKELETDRYC

Homology

[Close]

BLAST of CmoCh05G004730 vs. ExPASy Swiss-Prot
Match: Q84JB8 (Protein root UVB sensitive 3 OS=Arabidopsis thaliana OX=3702 GN=RUS3 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-24
Identity = 72/189 (38.10%), Postives = 96/189 (50.79%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           M+GM++GMLLAR T G P+AIWLSFLSLT+FHMYANY+AV CL L SLN +R SI L HF
Sbjct: 220 MMGMSLGMLLARFTSGNPMAIWLSFLSLTVFHMYANYRAVRCLVLNSLNFERSSILLTHF 279

Query: 61  IQTGQV------------------------------------------------------ 120
           IQTGQV                                                      
Sbjct: 280 IQTGQVLSPEQVSSMEGVLPLWATSLRSTNSKPLHKRVQLGVRVSSLPRLDMLQLLNGVG 339

Query: 121 -------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQA-SRHLESLSWMD 128
                  KYLL   K  + VI+ KD+   D+ +S+ HA+V A + +++ S + E  +W+D
Sbjct: 340 ASSYKNAKYLLAHIKGNVSVILHKDSKPADVLKSYIHAIVLANLMEKSTSFYSEGEAWID 399

[Close]

BLAST of CmoCh05G004730 vs. ExPASy Swiss-Prot
Match: Q91W34 (RUS family member 1 OS=Mus musculus OX=10090 GN=Rusf1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.9e-05
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           + G+ + +L+  +   CP      F+ LT  H+YANY+AV  L L +LN  R  + L+HF
Sbjct: 238 LAGLLVSLLMLPLVSDCPSLSLGCFVLLTALHIYANYRAVRALVLETLNESRLQLVLEHF 297

Query: 61  IQTGQV 67
           +Q G+V
Sbjct: 298 LQRGEV 303

[Close]

BLAST of CmoCh05G004730 vs. ExPASy Swiss-Prot
Match: Q5R8F6 (RUS family member 1 OS=Pongo abelii OX=9601 GN=Rusf1 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.9e-05
Identity = 25/66 (37.88%), Postives = 40/66 (60.61%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           +VG+ + +L+  +  GCP      F  LT  H+YANY+AV  L + +LN  R  + L+H+
Sbjct: 240 LVGLLVSLLMLPLVSGCPGFSLGCFFFLTALHIYANYRAVRALVMETLNEGRLRLVLKHY 299

Query: 61  IQTGQV 67
           +Q G+V
Sbjct: 300 LQRGEV 305

[Close]

BLAST of CmoCh05G004730 vs. ExPASy Swiss-Prot
Match: Q96GQ5 (RUS family member 1 OS=Homo sapiens OX=9606 GN=RUSF1 PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-04
Identity = 24/66 (36.36%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           + G+ + +L+  +  GCP      F  LT  H+YANY+AV  L + +LN  R  + L+H+
Sbjct: 240 LAGLLVSLLMLPLVSGCPGFSLGCFFFLTALHIYANYRAVRALVMETLNEGRLRLVLKHY 299

Query: 61  IQTGQV 67
           +Q G+V
Sbjct: 300 LQRGEV 305

[Close]

BLAST of CmoCh05G004730 vs. ExPASy Swiss-Prot
Match: Q499P8 (RUS family member 1 OS=Rattus norvegicus OX=10116 GN=Rusf1 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.1e-04
Identity = 24/66 (36.36%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           + G+ + +L+  +   C       F+ LT  H+YANY+AV  L L +LN  R  + L+HF
Sbjct: 238 LAGLLVSLLMLPLVSDCLSLSLGCFILLTALHIYANYRAVRALVLETLNESRLQLVLKHF 297

Query: 61  IQTGQV 67
           +Q G+V
Sbjct: 298 LQRGEV 303

[Close]

BLAST of CmoCh05G004730 vs. ExPASy TrEMBL
Match: A0A6J1HC09 (protein root UVB sensitive 3 OS=Cucurbita moschata OX=3662 GN=LOC111462628 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.7e-56
Identity = 127/187 (67.91%), Postives = 127/187 (67.91%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF
Sbjct: 218 MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 277

Query: 61  IQTGQ------------------------------------------------------- 120
           IQTGQ                                                       
Sbjct: 278 IQTGQVLSPQQVSKMEHVLPTWVSSWSLRSIKLIHTRVRLGERISSLHHSEMKELLQLAG 337

Query: 121 -----VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKH 128
                VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKH
Sbjct: 338 ANSNKVKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKH 397

[Close]

BLAST of CmoCh05G004730 vs. ExPASy TrEMBL
Match: A0A6J1KD16 (protein root UVB sensitive 3 OS=Cucurbita maxima OX=3661 GN=LOC111492141 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.7e-54
Identity = 124/187 (66.31%), Postives = 126/187 (67.38%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF
Sbjct: 218 MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 277

Query: 61  IQTGQ------------------------------------------------------- 120
           IQTGQ                                                       
Sbjct: 278 IQTGQVLSPQQVSKMEHVLPTWVSSWSLRSIKLIHTRVRLGERISSLSHSEMKELLQLAG 337

Query: 121 -----VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKH 128
                VKYLLMERK+II VIVRKDATA+DIFQSFFHALVTAYVPDQASRHLESLSWMDKH
Sbjct: 338 ANSNKVKYLLMERKAIIRVIVRKDATAHDIFQSFFHALVTAYVPDQASRHLESLSWMDKH 397

[Close]

BLAST of CmoCh05G004730 vs. ExPASy TrEMBL
Match: A0A5A7VCN7 (Protein root UVB sensitive 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00720 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-47
Identity = 112/189 (59.26%), Postives = 119/189 (62.96%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           M+GMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQH+
Sbjct: 223 MIGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHY 282

Query: 61  IQTGQV------------------------------------------------------ 120
           IQT QV                                                      
Sbjct: 283 IQTAQVLSPQQVSKMEHVLPAWASSWSLRSIKLIHTRVRLGVRVSSLHHTEIKELLHLAG 342

Query: 121 --------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMD 128
                   KYLL+ER+  I VIV+KDATANDIFQSF HALV AYVPDQ SRHLES+SWMD
Sbjct: 343 ANNNDKKEKYLLVEREGTISVIVQKDATANDIFQSFVHALVMAYVPDQESRHLESMSWMD 402

[Close]

BLAST of CmoCh05G004730 vs. ExPASy TrEMBL
Match: A0A1S3BCA3 (protein root UVB sensitive 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488468 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-47
Identity = 112/189 (59.26%), Postives = 119/189 (62.96%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           M+GMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQH+
Sbjct: 132 MIGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHY 191

Query: 61  IQTGQV------------------------------------------------------ 120
           IQT QV                                                      
Sbjct: 192 IQTAQVLSPQQVSKMEHVLPAWASSWSLRSIKLIHTRVRLGVRVSSLHHTEIKELLHLAG 251

Query: 121 --------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMD 128
                   KYLL+ER+  I VIV+KDATANDIFQSF HALV AYVPDQ SRHLES+SWMD
Sbjct: 252 ANNNDKKEKYLLVEREGTISVIVQKDATANDIFQSFVHALVMAYVPDQESRHLESMSWMD 311

[Close]

BLAST of CmoCh05G004730 vs. ExPASy TrEMBL
Match: A0A1S3BDL5 (protein root UVB sensitive 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488468 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-47
Identity = 112/189 (59.26%), Postives = 119/189 (62.96%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           M+GMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQH+
Sbjct: 218 MIGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHY 277

Query: 61  IQTGQV------------------------------------------------------ 120
           IQT QV                                                      
Sbjct: 278 IQTAQVLSPQQVSKMEHVLPAWASSWSLRSIKLIHTRVRLGVRVSSLHHTEIKELLHLAG 337

Query: 121 --------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMD 128
                   KYLL+ER+  I VIV+KDATANDIFQSF HALV AYVPDQ SRHLES+SWMD
Sbjct: 338 ANNNDKKEKYLLVEREGTISVIVQKDATANDIFQSFVHALVMAYVPDQESRHLESMSWMD 397

[Close]

BLAST of CmoCh05G004730 vs. NCBI nr
Match: XP_022962049.1 (protein root UVB sensitive 3 [Cucurbita moschata] >XP_022962050.1 protein root UVB sensitive 3 [Cucurbita moschata] >XP_022962051.1 protein root UVB sensitive 3 [Cucurbita moschata] >XP_022962052.1 protein root UVB sensitive 3 [Cucurbita moschata] >XP_022962053.1 protein root UVB sensitive 3 [Cucurbita moschata] >XP_022962054.1 protein root UVB sensitive 3 [Cucurbita moschata] >XP_022962055.1 protein root UVB sensitive 3 [Cucurbita moschata] >XP_022962056.1 protein root UVB sensitive 3 [Cucurbita moschata])

HSP 1 Score: 227.6 bits (579), Expect = 7.6e-56
Identity = 127/187 (67.91%), Postives = 127/187 (67.91%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF
Sbjct: 218 MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 277

Query: 61  IQTGQ------------------------------------------------------- 120
           IQTGQ                                                       
Sbjct: 278 IQTGQVLSPQQVSKMEHVLPTWVSSWSLRSIKLIHTRVRLGERISSLHHSEMKELLQLAG 337

Query: 121 -----VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKH 128
                VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKH
Sbjct: 338 ANSNKVKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKH 397

[Close]

BLAST of CmoCh05G004730 vs. NCBI nr
Match: KAG6598638.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 225.7 bits (574), Expect = 2.9e-55
Identity = 126/187 (67.38%), Postives = 126/187 (67.38%), Query Frame = 0


Query: 1    MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
            MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF
Sbjct: 858  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 917

Query: 61   IQTGQ------------------------------------------------------- 120
            IQTGQ                                                       
Sbjct: 918  IQTGQVLSPQQVSKMEHVLPTWVSSWSLRSIKLIHTRVRLGERISSLHHSEMKELLQLAG 977

Query: 121  -----VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKH 128
                 VKYLLMERKSIICVIVRKDATANDIFQSFFHALV AYVPDQASRHLESLSWMDKH
Sbjct: 978  ANSNKVKYLLMERKSIICVIVRKDATANDIFQSFFHALVAAYVPDQASRHLESLSWMDKH 1037

[Close]

BLAST of CmoCh05G004730 vs. NCBI nr
Match: KAG7029574.1 (Protein root UVB sensitive 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.7 bits (574), Expect = 2.9e-55
Identity = 126/187 (67.38%), Postives = 126/187 (67.38%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF
Sbjct: 218 MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 277

Query: 61  IQTGQ------------------------------------------------------- 120
           IQTGQ                                                       
Sbjct: 278 IQTGQVLSPQQVSKMEHVLPTWVSSWSLRSIKLIHTRVRLGERISSLHHSEMKELLQLAG 337

Query: 121 -----VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKH 128
                VKYLLMERKSIICVIVRKDATANDIFQSFFHALV AYVPDQASRHLESLSWMDKH
Sbjct: 338 ANSNKVKYLLMERKSIICVIVRKDATANDIFQSFFHALVAAYVPDQASRHLESLSWMDKH 397

[Close]

BLAST of CmoCh05G004730 vs. NCBI nr
Match: XP_023546684.1 (protein root UVB sensitive 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546686.1 protein root UVB sensitive 3 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023546687.1 protein root UVB sensitive 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546688.1 protein root UVB sensitive 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546689.1 protein root UVB sensitive 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546690.1 protein root UVB sensitive 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546691.1 protein root UVB sensitive 3 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.7 bits (561), Expect = 9.3e-54
Identity = 123/187 (65.78%), Postives = 126/187 (67.38%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           MVGMAIGMLLARITMGCPLAIW+SFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF
Sbjct: 218 MVGMAIGMLLARITMGCPLAIWVSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 277

Query: 61  IQTGQ------------------------------------------------------- 120
           IQTGQ                                                       
Sbjct: 278 IQTGQVLSPQQVSKMEHVLPTWVSSWSLRSIKLIHTRVRLGERISSLHYSEMKELLQLAG 337

Query: 121 -----VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKH 128
                VKYLLMERK+IICVIVRKDATA+DIFQSFFHALVTAYVPDQASRHLESLSWMDKH
Sbjct: 338 ANSNKVKYLLMERKAIICVIVRKDATAHDIFQSFFHALVTAYVPDQASRHLESLSWMDKH 397

[Close]

BLAST of CmoCh05G004730 vs. NCBI nr
Match: XP_022997148.1 (protein root UVB sensitive 3 [Cucurbita maxima] >XP_022997150.1 protein root UVB sensitive 3 [Cucurbita maxima] >XP_022997151.1 protein root UVB sensitive 3 [Cucurbita maxima] >XP_022997152.1 protein root UVB sensitive 3 [Cucurbita maxima] >XP_022997153.1 protein root UVB sensitive 3 [Cucurbita maxima] >XP_022997154.1 protein root UVB sensitive 3 [Cucurbita maxima] >XP_022997155.1 protein root UVB sensitive 3 [Cucurbita maxima] >XP_022997156.1 protein root UVB sensitive 3 [Cucurbita maxima])

HSP 1 Score: 219.9 bits (559), Expect = 1.6e-53
Identity = 124/187 (66.31%), Postives = 126/187 (67.38%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF
Sbjct: 218 MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 277

Query: 61  IQTGQ------------------------------------------------------- 120
           IQTGQ                                                       
Sbjct: 278 IQTGQVLSPQQVSKMEHVLPTWVSSWSLRSIKLIHTRVRLGERISSLSHSEMKELLQLAG 337

Query: 121 -----VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKH 128
                VKYLLMERK+II VIVRKDATA+DIFQSFFHALVTAYVPDQASRHLESLSWMDKH
Sbjct: 338 ANSNKVKYLLMERKAIIRVIVRKDATAHDIFQSFFHALVTAYVPDQASRHLESLSWMDKH 397

[Close]

BLAST of CmoCh05G004730 vs. TAIR 10
Match: AT1G13770.1 (Protein of unknown function, DUF647 )

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-25
Identity = 72/189 (38.10%), Postives = 96/189 (50.79%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           M+GM++GMLLAR T G P+AIWLSFLSLT+FHMYANY+AV CL L SLN +R SI L HF
Sbjct: 220 MMGMSLGMLLARFTSGNPMAIWLSFLSLTVFHMYANYRAVRCLVLNSLNFERSSILLTHF 279

Query: 61  IQTGQV------------------------------------------------------ 120
           IQTGQV                                                      
Sbjct: 280 IQTGQVLSPEQVSSMEGVLPLWATSLRSTNSKPLHKRVQLGVRVSSLPRLDMLQLLNGVG 339

Query: 121 -------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQA-SRHLESLSWMD 128
                  KYLL   K  + VI+ KD+   D+ +S+ HA+V A + +++ S + E  +W+D
Sbjct: 340 ASSYKNAKYLLAHIKGNVSVILHKDSKPADVLKSYIHAIVLANLMEKSTSFYSEGEAWID 399

[Close]

BLAST of CmoCh05G004730 vs. TAIR 10
Match: AT1G13770.2 (Protein of unknown function, DUF647 )

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-25
Identity = 72/189 (38.10%), Postives = 96/189 (50.79%), Query Frame = 0


Query: 1   MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHF 60
           M+GM++GMLLAR T G P+AIWLSFLSLT+FHMYANY+AV CL L SLN +R SI L HF
Sbjct: 133 MMGMSLGMLLARFTSGNPMAIWLSFLSLTVFHMYANYRAVRCLVLNSLNFERSSILLTHF 192

Query: 61  IQTGQV------------------------------------------------------ 120
           IQTGQV                                                      
Sbjct: 193 IQTGQVLSPEQVSSMEGVLPLWATSLRSTNSKPLHKRVQLGVRVSSLPRLDMLQLLNGVG 252

Query: 121 -------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQA-SRHLESLSWMD 128
                  KYLL   K  + VI+ KD+   D+ +S+ HA+V A + +++ S + E  +W+D
Sbjct: 253 ASSYKNAKYLLAHIKGNVSVILHKDSKPADVLKSYIHAIVLANLMEKSTSFYSEGEAWID 312

The following BLAST results are available for this feature:

BLAST of CmoCh05G004730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84JB8	3.6e-24	38.10	Protein root UVB sensitive 3 OS=Arabidopsis thaliana OX=3702 GN=RUS3 PE=2 SV=1	[more]
Q91W34	2.9e-05	37.88	RUS family member 1 OS=Mus musculus OX=10090 GN=Rusf1 PE=1 SV=1	[more]
Q5R8F6	4.9e-05	37.88	RUS family member 1 OS=Pongo abelii OX=9601 GN=Rusf1 PE=2 SV=1	[more]
Q96GQ5	1.4e-04	36.36	RUS family member 1 OS=Homo sapiens OX=9606 GN=RUSF1 PE=1 SV=2	[more]
Q499P8	4.1e-04	36.36	RUS family member 1 OS=Rattus norvegicus OX=10116 GN=Rusf1 PE=2 SV=1	[more]

BLAST of CmoCh05G004730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HC09	3.7e-56	67.91	protein root UVB sensitive 3 OS=Cucurbita moschata OX=3662 GN=LOC111462628 PE=3 ...	[more]
A0A6J1KD16	7.7e-54	66.31	protein root UVB sensitive 3 OS=Cucurbita maxima OX=3661 GN=LOC111492141 PE=3 SV...	[more]
A0A5A7VCN7	1.8e-47	59.26	Protein root UVB sensitive 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BCA3	1.8e-47	59.26	protein root UVB sensitive 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488468 ...	[more]
A0A1S3BDL5	1.8e-47	59.26	protein root UVB sensitive 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488468 ...	[more]

BLAST of CmoCh05G004730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962049.1	7.6e-56	67.91	protein root UVB sensitive 3 [Cucurbita moschata] >XP_022962050.1 protein root U...	[more]
KAG6598638.1	2.9e-55	67.38	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
KAG7029574.1	2.9e-55	67.38	Protein root UVB sensitive 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023546684.1	9.3e-54	65.78	protein root UVB sensitive 3 isoform X1 [Cucurbita pepo subsp. pepo] >XP_0235466...	[more]
XP_022997148.1	1.6e-53	66.31	protein root UVB sensitive 3 [Cucurbita maxima] >XP_022997150.1 protein root UVB...	[more]

BLAST of CmoCh05G004730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13770.1	2.6e-25	38.10	Protein of unknown function, DUF647	[more]
AT1G13770.2	2.6e-25	38.10	Protein of unknown function, DUF647	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006968	Root UVB sensitive family	PFAM	PF04884	DUF647	coord: 1..64 e-value: 5.5E-12 score: 45.8
IPR006968	Root UVB sensitive family	PANTHER	PTHR12770	RUS1 FAMILY PROTEIN C16ORF58	coord: 1..66 coord: 66..131
None	No IPR available	PANTHER	PTHR12770:SF31	PROTEIN ROOT UVB SENSITIVE 3	coord: 1..66 coord: 66..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G004730.1	CmoCh05G004730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane