CmoCh05G003710 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G003710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Flotillin-like
Location	Cmo_Chr05: 1676358 .. 1676647 (-)
RNA-Seq Expression	CmoCh05G003710
Synteny	CmoCh05G003710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCTGATAAGCTCCCCTCCGTCTTCACCATCGGCCTCCGCTCCGAAGACATGGATAGCCTCCTCAAGAATGCCAAGTTCTCTATTGAGGACGAGACCCGAGTGATTTAGGCTTCCATGACCACGGAAGGCATTTTAGAAGGCACCAAACAGTTTAAGCACGACGTGTTTGGAAAGATTTAGATGGAACTTGATCAATTTGGGGTTGTGGTTTATAACAGTTGATGGACGCGACAGGGCATGAATACTTCTCGTATTTGGGCCAGAAGCCGCCGAGGCTGAGATGA

mRNA sequence

ATGAGAGCTGATAAGCTCCCCTCCGTCTTCACCATCGGCCTCCGCTCCGAAGACATGGATAGCCTCCTCAAGAATGCCAAGTTCTCTATTGAGGACGAGACCCGAGCTTCCATGACCACGGAAGGCATTTTAGAAGGCACCAAACAGTTTAAGCACGACTTGATGGACGCGACAGGGCATGAATACTTCTCGTATTTGGGCCAGAAGCCGCCGAGGCTGAGATGA

Coding sequence (CDS)

ATGAGAGCTGATAAGCTCCCCTCCGTCTTCACCATCGGCCTCCGCTCCGAAGACATGGATAGCCTCCTCAAGAATGCCAAGTTCTCTATTGAGGACGAGACCCGAGCTTCCATGACCACGGAAGGCATTTTAGAAGGCACCAAACAGTTTAAGCACGACTTGATGGACGCGACAGGGCATGAATACTTCTCGTATTTGGGCCAGAAGCCGCCGAGGCTGAGATGA

Protein sequence

MRADKLPSVFTIGLRSEDMDSLLKNAKFSIEDETRASMTTEGILEGTKQFKHDLMDATGHEYFSYLGQKPPRLR

Homology

[Close]

BLAST of CmoCh05G003710 vs. ExPASy Swiss-Prot
Match: D2XNQ9 (Flotillin-like protein 2 OS=Medicago truncatula OX=3880 GN=FLOT2 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-09
Identity = 44/107 (41.12%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG R +D +SLLK AK                   IE ETR   ASMT E +  
Sbjct: 63  LPAVFTIGPRVDDQESLLKYAKLISPHDRHSNHVNELVQGIIEGETRVLAASMTMEEVFR 122

Query: 66  GTKQFKHD-----------------------LMDATGHEYFSYLGQK 70
           GTKQFK +                       L+D  GHEYFSYLGQK
Sbjct: 123 GTKQFKQEVFDKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQK 169

[Close]

BLAST of CmoCh05G003710 vs. ExPASy Swiss-Prot
Match: D2XNR0 (Flotillin-like protein 3 OS=Medicago truncatula OX=3880 GN=FLOT3 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-09
Identity = 44/107 (41.12%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG R +D +SLLK AK                   IE ETR   ASMT E +  
Sbjct: 61  LPAVFTIGPRVDDQESLLKYAKLISPHDRHSNHVNELVQGIIEGETRVLAASMTMEEVFR 120

Query: 66  GTKQFKHD-----------------------LMDATGHEYFSYLGQK 70
           GTKQFK +                       L+D  GHEYFSYLGQK
Sbjct: 121 GTKQFKQEVFDKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQK 167

[Close]

BLAST of CmoCh05G003710 vs. ExPASy Swiss-Prot
Match: D2XNR2 (Flotillin-like protein 6 OS=Medicago truncatula OX=3880 GN=FLOT6 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.3e-09
Identity = 44/107 (41.12%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG R +D +SLLK AK                   IE ETR   ASMT E +  
Sbjct: 63  LPAVFTIGPRVDDKESLLKYAKLISPHARHSNHVNELVQGIIEGETRVLAASMTMEEVFR 122

Query: 66  GTKQFKHD-----------------------LMDATGHEYFSYLGQK 70
           GTKQFK +                       L+D  GHEYFSYLGQK
Sbjct: 123 GTKQFKQEVFDKVQLELNQFGLLIYNANVKQLVDVRGHEYFSYLGQK 169

[Close]

BLAST of CmoCh05G003710 vs. ExPASy Swiss-Prot
Match: D2XNQ8 (Flotillin-like protein 1 OS=Medicago truncatula OX=3880 GN=FLOT1 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-08
Identity = 43/107 (40.19%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG R +D +SLLK AK                   IE ETR   ASMT E +  
Sbjct: 61  LPAVFTIGPRVDDYESLLKYAKLISPHDKLSNHVNELVQGIIEGETRVLVASMTMEEVFR 120

Query: 66  GTKQFKHD-----------------------LMDATGHEYFSYLGQK 70
           GTK+FK +                       L+D  GHEYFSYLGQK
Sbjct: 121 GTKEFKQEVFDKVQLELNQFGLWIYNANVKQLVDVPGHEYFSYLGQK 167

[Close]

BLAST of CmoCh05G003710 vs. ExPASy Swiss-Prot
Match: D2XNR1 (Flotillin-like protein 4 OS=Medicago truncatula OX=3880 GN=FLOT4 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-08
Identity = 43/107 (40.19%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG R +D +SLLK AK                   IE ETR   ASMT E +  
Sbjct: 61  LPAVFTIGPRVDDKESLLKYAKLISPHDKLSNHVKELVQGIIEGETRVLAASMTMEEVFR 120

Query: 66  GTKQFKHD-----------------------LMDATGHEYFSYLGQK 70
           GTK+FK +                       L+D  GHEYFSYLGQK
Sbjct: 121 GTKEFKQEVFGKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQK 167

[Close]

BLAST of CmoCh05G003710 vs. ExPASy TrEMBL
Match: A0A540KIM0 (Flotillin-like OS=Malus baccata OX=106549 GN=C1H46_040612 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09
Identity = 43/84 (51.19%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG R +D+ SL K AK                   IE ETR   ASMT E +L 
Sbjct: 61  LPAVFTIGPRIDDIHSLHKYAKLISRNDKLSSHVKELVQGIIEGETRVLAASMTMEEVLR 120

Query: 66  GTKQFKHDLMDATGHEYFSYLGQK 70
           GTK+FK +L+D  GHEYFSYLGQK
Sbjct: 121 GTKEFKQELVDVPGHEYFSYLGQK 144

[Close]

BLAST of CmoCh05G003710 vs. ExPASy TrEMBL
Match: A0A072TR33 (Flotillin-like OS=Medicago truncatula OX=3880 GN=MTR_8g063830 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 43/85 (50.59%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG R +D +SLLK AK                   IE ETR   ASMT E +  
Sbjct: 50  LPAVFTIGPRVDDHESLLKYAKLISQHDRHSNHVNELVQGIIESETRVLAASMTMEEVFR 109

Query: 66  GTKQF-KHDLMDATGHEYFSYLGQK 70
           GTK+F K  L+D  GHEYFSYLGQK
Sbjct: 110 GTKEFIKEQLVDVPGHEYFSYLGQK 134

[Close]

BLAST of CmoCh05G003710 vs. ExPASy TrEMBL
Match: A0A0A0LM23 (Flotillin-like OS=Cucumis sativus OX=3659 GN=Csa_2G382440 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.4e-08
Identity = 47/107 (43.93%), Postives = 52/107 (48.60%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG RS+DMDSLLK AK                   IE ETR   ASMT E I  
Sbjct: 61  LPAVFTIGPRSDDMDSLLKYAKLISPHDKLSNHVKELVQGVIEGETRVLAASMTMEEIFR 120

Query: 66  GTKQFKHD-----------------------LMDATGHEYFSYLGQK 70
           GTK+FK +                       L+D  GHEYFSYLGQK
Sbjct: 121 GTKEFKQEVFGKVQLELDQFGLLIYNANVKQLVDVRGHEYFSYLGQK 167

[Close]

BLAST of CmoCh05G003710 vs. ExPASy TrEMBL
Match: A0A7I8JAA5 (Flotillin-like OS=Spirodela intermedia OX=51605 GN=SI7747_10013423 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.3e-08
Identity = 45/97 (46.39%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNA-------KFSIEDETR---ASMTTEGILEGTKQFKHD-- 65
           LP+VFTIG RS+DM+SLLK A       K S   ETR   ASMT E I +GTK FK +  
Sbjct: 63  LPAVFTIGPRSDDMESLLKYAKLISPHDKLSNHGETRVLAASMTMEEIFKGTKSFKEEVF 122

Query: 66  ---------------------LMDATGHEYFSYLGQK 70
                                L+D  GHEYFSYLGQK
Sbjct: 123 GKVQLELNQFGLLIYNANVKQLVDVRGHEYFSYLGQK 159

[Close]

BLAST of CmoCh05G003710 vs. ExPASy TrEMBL
Match: A0A396GP39 (Flotillin-like OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0364981 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 43/89 (48.31%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 6  LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
          LP+VFTIG R +D +SLLK AK                   IE ETR   ASMT E +  
Sbjct: 10 LPAVFTIGPRVDDHESLLKYAKLISQHDRHSNHVNELVQGIIESETRVLAASMTMEEVFR 69

Query: 66 GTKQ-----FKHDLMDATGHEYFSYLGQK 70
          GTK+     FK  L+D  GHEYFSYLGQK
Sbjct: 70 GTKEFIKEVFKKQLVDVPGHEYFSYLGQK 98

[Close]

BLAST of CmoCh05G003710 vs. NCBI nr
Match: TQD73862.1 (hypothetical protein C1H46_040612 [Malus baccata])

HSP 1 Score: 71.2 bits (173), Expect = 4.1e-09
Identity = 43/84 (51.19%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG R +D+ SL K AK                   IE ETR   ASMT E +L 
Sbjct: 61  LPAVFTIGPRIDDIHSLHKYAKLISRNDKLSSHVKELVQGIIEGETRVLAASMTMEEVLR 120

Query: 66  GTKQFKHDLMDATGHEYFSYLGQK 70
           GTK+FK +L+D  GHEYFSYLGQK
Sbjct: 121 GTKEFKQELVDVPGHEYFSYLGQK 144

[Close]

BLAST of CmoCh05G003710 vs. NCBI nr
Match: KAG5539365.1 (hypothetical protein RHGRI_019797 [Rhododendron griersonianum])

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-08
Identity = 42/84 (50.00%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG R +  ++LLK AK                   IE ETR   ASMT E I +
Sbjct: 31  LPAVFTIGPRIDSDEALLKFAKLISPHDKQSNHVVELVQGVIEGETRDLAASMTMEEIFK 90

Query: 66  GTKQFKHDLMDATGHEYFSYLGQK 70
           GTK+FK +L+D  GHEYFSYLGQK
Sbjct: 91  GTKEFKKELVDVPGHEYFSYLGQK 114

[Close]

BLAST of CmoCh05G003710 vs. NCBI nr
Match: KEH19959.1 (SPFH/band 7/PHB domain membrane-associated family protein [Medicago truncatula])

HSP 1 Score: 67.4 bits (163), Expect = 5.9e-08
Identity = 43/85 (50.59%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG R +D +SLLK AK                   IE ETR   ASMT E +  
Sbjct: 50  LPAVFTIGPRVDDHESLLKYAKLISQHDRHSNHVNELVQGIIESETRVLAASMTMEEVFR 109

Query: 66  GTKQF-KHDLMDATGHEYFSYLGQK 70
           GTK+F K  L+D  GHEYFSYLGQK
Sbjct: 110 GTKEFIKEQLVDVPGHEYFSYLGQK 134

[Close]

BLAST of CmoCh05G003710 vs. NCBI nr
Match: XP_011649835.2 (LOW QUALITY PROTEIN: flotillin-like protein 4 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 47/107 (43.93%), Postives = 52/107 (48.60%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG RS+DMDSLLK AK                   IE ETR   ASMT E I  
Sbjct: 61  LPAVFTIGPRSDDMDSLLKYAKLISPHDKLSNHVKELVQGVIEGETRVLAASMTMEEIFR 120

Query: 66  GTKQFKHD-----------------------LMDATGHEYFSYLGQK 70
           GTK+FK +                       L+D  GHEYFSYLGQK
Sbjct: 121 GTKEFKQEVFGKVQLELDQFGLLIYNANVKQLVDVRGHEYFSYLGQK 167

[Close]

BLAST of CmoCh05G003710 vs. NCBI nr
Match: KGN62970.1 (hypothetical protein Csa_022496 [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 47/107 (43.93%), Postives = 52/107 (48.60%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG RS+DMDSLLK AK                   IE ETR   ASMT E I  
Sbjct: 61  LPAVFTIGPRSDDMDSLLKYAKLISPHDKLSNHVKELVQGVIEGETRVLAASMTMEEIFR 120

Query: 66  GTKQFKHD-----------------------LMDATGHEYFSYLGQK 70
           GTK+FK +                       L+D  GHEYFSYLGQK
Sbjct: 121 GTKEFKQEVFGKVQLELDQFGLLIYNANVKQLVDVRGHEYFSYLGQK 167

[Close]

BLAST of CmoCh05G003710 vs. TAIR 10
Match: AT5G25250.1 (SPFH/Band 7/PHB domain-containing membrane-associated protein family )

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-08
Identity = 41/107 (38.32%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG R +D D+L+  A+                   IE ETR   ASMT E I +
Sbjct: 61  LPAVFTIGPRVDDDDALILYARLISPHDKDSNHVHELVEGVIEGETRVLAASMTMEEIFK 120

Query: 66  GTKQFKHD-----------------------LMDATGHEYFSYLGQK 70
           GTK+FK +                       L+D  GHEYFSYLGQK
Sbjct: 121 GTKEFKKEVFDKVQLELNQFGLVIYNANVKQLVDVPGHEYFSYLGQK 167

[Close]

BLAST of CmoCh05G003710 vs. TAIR 10
Match: AT5G25260.1 (SPFH/Band 7/PHB domain-containing membrane-associated protein family )

HSP 1 Score: 54.3 bits (129), Expect = 4.8e-08
Identity = 40/107 (37.38%), Postives = 50/107 (46.73%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKF-----------------SIEDETR---ASMTTEGILE 65
           LP+VFTIG R +D ++L+  A+                   IE ETR   ASMT E I +
Sbjct: 61  LPAVFTIGPRVDDTEALILYARLISPHDKQSNHVNELVEGVIEGETRVLAASMTMEEIFK 120

Query: 66  GTKQFKHD-----------------------LMDATGHEYFSYLGQK 70
           GTK+FK +                       L+D  GHEYFSYLGQK
Sbjct: 121 GTKEFKKEVFDKVQLELDQFGLVIYNANVKQLVDVPGHEYFSYLGQK 167

[Close]

BLAST of CmoCh05G003710 vs. TAIR 10
Match: AT5G64870.1 (SPFH/Band 7/PHB domain-containing membrane-associated protein family )

HSP 1 Score: 51.6 bits (122), Expect = 3.1e-07
Identity = 39/107 (36.45%), Postives = 48/107 (44.86%), Query Frame = 0


Query: 6   LPSVFTIGLRSEDMDSLLKNAKFS-----------------IEDETR---ASMTTEGILE 65
           +P+VFTIG R +D  +LL  A                    IE ETR   ASMT E + +
Sbjct: 62  IPAVFTIGPRVDDPHALLLYAMLMSQHDKHSNHVNELVQGVIEGETRVLVASMTMEEVFK 121

Query: 66  GTKQFKHD-----------------------LMDATGHEYFSYLGQK 70
           GTK+FK +                       L+D  GHEYFSYLGQK
Sbjct: 122 GTKEFKKEVFDKVQLELNQFGLVIYNANVKQLVDVPGHEYFSYLGQK 168

The following BLAST results are available for this feature:

BLAST of CmoCh05G003710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
D2XNQ9	5.6e-09	41.12	Flotillin-like protein 2 OS=Medicago truncatula OX=3880 GN=FLOT2 PE=2 SV=1	[more]
D2XNR0	5.6e-09	41.12	Flotillin-like protein 3 OS=Medicago truncatula OX=3880 GN=FLOT3 PE=2 SV=1	[more]
D2XNR2	7.3e-09	41.12	Flotillin-like protein 6 OS=Medicago truncatula OX=3880 GN=FLOT6 PE=2 SV=1	[more]
D2XNQ8	1.6e-08	40.19	Flotillin-like protein 1 OS=Medicago truncatula OX=3880 GN=FLOT1 PE=2 SV=1	[more]
D2XNR1	1.6e-08	40.19	Flotillin-like protein 4 OS=Medicago truncatula OX=3880 GN=FLOT4 PE=2 SV=1	[more]

BLAST of CmoCh05G003710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A540KIM0	2.0e-09	51.19	Flotillin-like OS=Malus baccata OX=106549 GN=C1H46_040612 PE=3 SV=1	[more]
A0A072TR33	2.9e-08	50.59	Flotillin-like OS=Medicago truncatula OX=3880 GN=MTR_8g063830 PE=3 SV=1	[more]
A0A0A0LM23	6.4e-08	43.93	Flotillin-like OS=Cucumis sativus OX=3659 GN=Csa_2G382440 PE=3 SV=1	[more]
A0A7I8JAA5	8.3e-08	46.39	Flotillin-like OS=Spirodela intermedia OX=51605 GN=SI7747_10013423 PE=3 SV=1	[more]
A0A396GP39	1.1e-07	48.31	Flotillin-like OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr8g0364981 PE=3 SV=1	[more]

BLAST of CmoCh05G003710 vs. NCBI nr


Match Name	E-value	Identity	Description
TQD73862.1	4.1e-09	51.19	hypothetical protein C1H46_040612 [Malus baccata]	[more]
KAG5539365.1	2.7e-08	50.00	hypothetical protein RHGRI_019797 [Rhododendron griersonianum]	[more]
KEH19959.1	5.9e-08	50.59	SPFH/band 7/PHB domain membrane-associated family protein [Medicago truncatula]	[more]
XP_011649835.2	1.3e-07	43.93	LOW QUALITY PROTEIN: flotillin-like protein 4 [Cucumis sativus]	[more]
KGN62970.1	1.3e-07	43.93	hypothetical protein Csa_022496 [Cucumis sativus]	[more]

BLAST of CmoCh05G003710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25250.1	2.8e-08	38.32	SPFH/Band 7/PHB domain-containing membrane-associated protein family	[more]
AT5G25260.1	4.8e-08	37.38	SPFH/Band 7/PHB domain-containing membrane-associated protein family	[more]
AT5G64870.1	3.1e-07	36.45	SPFH/Band 7/PHB domain-containing membrane-associated protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G003710.1	CmoCh05G003710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane