CmoCh05G003590 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G003590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Poly(A)-specific ribonuclease
Location	Cmo_Chr05: 1626213 .. 1627037 (+)
RNA-Seq Expression	CmoCh05G003590
Synteny	CmoCh05G003590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATTTTACCGAAAGGCGATTCCATTCAAATCCGTGAGGTTTGGAACGATAATTTGGAGGAGGAGTTTGCGCTAATCCGTGAGATTGTTGATAAATTTAACTACATAGCCATGGATACTGAGTTTCCTGGAGTGGTGCTTCGCCCGTTGGGTGCCTTCAAGAATATCAATGATTACAACTACCAGACTCTTAAGGATAATGTTGACATGTTGAAGTTGATTCAATTGGGTCTTACGTTCTCTGACGAGAATGGAAATCTCCCGACTTGTGGAACCGATAGCTTTTGTATTTGGCAGTTCAATTTCCGCGAGTTCAATATTGTTAGTGATATTTTTGCTAGTGATTCAATTGAGCTTCTGCGCCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGCAGATGTGAACTGGGTTACGTTCCACAGTGGGTATGATTTCGGTTACTTGCTGAAATTGCTCACTTGCCGAGGCTTACCAGAAAAGCAGGACGGATTCTTTGACCTGATCAATGTCTATTTCCCAGTGGTTTATGATATCAAGCATTTGATGAAGTTCTGCAACAGTCTTCATGGTGGGCTGAACAAGCTTGCGGAGTTATTAGAAGTGGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTCTACTTTTAGGAAGTTAAGGAATACCTTTTTCAATGGATCTATACAGAAATACGCAGGTGTTTTGTATGGTCTCGGTGTTGAAAATGGACAGCGTACTAATTGA

mRNA sequence

ATGTCGATTTTACCGAAAGGCGATTCCATTCAAATCCGTGAGGTTTGGAACGATAATTTGGAGGAGGAGTTTGCGCTAATCCGTGAGATTGTTGATAAATTTAACTACATAGCCATGGATACTGAGTTTCCTGGAGTGGTGCTTCGCCCGTTGGGTGCCTTCAAGAATATCAATGATTACAACTACCAGACTCTTAAGGATAATGTTGACATGTTGAAGTTGATTCAATTGGGTCTTACGTTCTCTGACGAGAATGGAAATCTCCCGACTTGTGGAACCGATAGCTTTTGTATTTGGCAGTTCAATTTCCGCGAGTTCAATATTGTTAGTGATATTTTTGCTAGTGATTCAATTGAGCTTCTGCGCCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGCAGATGTGAACTGGGTTACGTTCCACAGTGGGTATGATTTCGGTTACTTGCTGAAATTGCTCACTTGCCGAGGCTTACCAGAAAAGCAGGACGGATTCTTTGACCTGATCAATGTCTATTTCCCAGTGGTTTATGATATCAAGCATTTGATGAAGTTCTGCAACAGTCTTCATGGTGGGCTGAACAAGCTTGCGGAGTTATTAGAAGTGGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTCTACTTTTAGGAAGTTAAGGAATACCTTTTTCAATGGATCTATACAGAAATACGCAGGTGTTTTGTATGGTCTCGGTGTTGAAAATGGACAGCGTACTAATTGA

Coding sequence (CDS)

ATGTCGATTTTACCGAAAGGCGATTCCATTCAAATCCGTGAGGTTTGGAACGATAATTTGGAGGAGGAGTTTGCGCTAATCCGTGAGATTGTTGATAAATTTAACTACATAGCCATGGATACTGAGTTTCCTGGAGTGGTGCTTCGCCCGTTGGGTGCCTTCAAGAATATCAATGATTACAACTACCAGACTCTTAAGGATAATGTTGACATGTTGAAGTTGATTCAATTGGGTCTTACGTTCTCTGACGAGAATGGAAATCTCCCGACTTGTGGAACCGATAGCTTTTGTATTTGGCAGTTCAATTTCCGCGAGTTCAATATTGTTAGTGATATTTTTGCTAGTGATTCAATTGAGCTTCTGCGCCAGTGTGGTATTGATTTTCAGAAGAACAATGAAGAGGGTATCGATGTCAATCGTTTTGGTGAGCTTCTAATGTCTTCTGGGGTTGTGTTAAACGCAGATGTGAACTGGGTTACGTTCCACAGTGGGTATGATTTCGGTTACTTGCTGAAATTGCTCACTTGCCGAGGCTTACCAGAAAAGCAGGACGGATTCTTTGACCTGATCAATGTCTATTTCCCAGTGGTTTATGATATCAAGCATTTGATGAAGTTCTGCAACAGTCTTCATGGTGGGCTGAACAAGCTTGCGGAGTTATTAGAAGTGGAGAGGATTGGAGTTTGTCATCAAGCAGGATCAGATAGTCTGCTTACTGCCTCTACTTTTAGGAAGTTAAGGAATACCTTTTTCAATGGATCTATACAGAAATACGCAGGTGTTTTGTATGGTCTCGGTGTTGAAAATGGACAGCGTACTAATTGA

Protein sequence

MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIELLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLPEKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTASTFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN

Homology

[Close]

BLAST of CmoCh05G003590 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 447.2 bits (1149), Expect = 1.3e-124
Identity = 208/272 (76.47%), Postives = 241/272 (88.60%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWNDNLE E ALIRE+VD F ++AMDTEFPG+V RP+G FK   +Y
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDS-FCIWQFNFREFNIVSDIFASDSIE 120
           +Y+TLK NV++LK+IQLGLTFSDE GNLPTCGTD+ +CIWQFNFREF++ SDI+A+DSIE
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGL 180
           LLRQ GIDF KNNE GID  RF ELLMSSG+VLN +V+WVTFHSGYDFGYLLKLLTC+ L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 181 PEKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           PE Q GFF++I+VYFP VYDIKHLMKFCNSLHGGLNKLAELL+VER+G+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

Query: 241 ASTFRKLRNTFFNGSIQKYAGVLYGLGVENGQ 272
           + TFRKL+  FF GS++KY+GVLYGLGVENGQ
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQ 272

[Close]

BLAST of CmoCh05G003590 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 5.6e-123
Identity = 204/271 (75.28%), Postives = 235/271 (86.72%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWNDNL+EE  LIR++VD F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           +Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTD +CIWQFNFREF++ SDIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           L+Q GID  KN  +GID  RF ELLMSSG+VLN +V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q  FF LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQ 272
            TFRKL+  FF G + KY+GVLYGLGVENGQ
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271

[Close]

BLAST of CmoCh05G003590 vs. ExPASy Swiss-Prot
Match: Q9LEU4 (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 2.0e-120
Identity = 203/268 (75.75%), Postives = 231/268 (86.19%), Query Frame = 0


Query: 6   KGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDYNYQTL 65
           K DSI IREVW+ NL EEFALIREIVDKF+YIAMDTEFPGVVL+P+  FK  ND NY+TL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 66  KDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIELLRQCG 125
           K+NVD+LKLIQ+GLTFSDENGNLPTCGTD FCIWQFNFREFNI  DI+AS+SIELLRQCG
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 126 IDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLPEKQDG 185
           IDF+KN E+GIDV RFGEL+MSSG+VLN  ++WVTFH GYDFGYL+KLLTC+ LP KQ  
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 186 FFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTASTFRK 245
           FF L+ VYFP VYDIKHLM FCN L GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

Query: 246 LRNTFFNGSIQKYAGVLYGLGVENGQRT 274
           L+  +F GS +KY GVLYGLGVE+G  T
Sbjct: 246 LKERYFPGSTEKYTGVLYGLGVEDGTTT 273

[Close]

BLAST of CmoCh05G003590 vs. ExPASy Swiss-Prot
Match: Q9S9P2 (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=CAF1-2 PE=1 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 3.7e-98
Identity = 170/264 (64.39%), Postives = 207/264 (78.41%), Query Frame = 0


Query: 8   DSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNIN------DYN 67
           D+I+IREVWN NLE+E ALI + +D F Y+AMDTEFPG+V + + A  N N      +YN
Sbjct: 12  DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN 71

Query: 68  YQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIELL 127
           Y TLK NV+MLKLIQLGLT SDE GNLPTCGT+  CIWQFNFREFN++SD+FA DSIELL
Sbjct: 72  YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131

Query: 128 RQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLPE 187
           R+  ID +KNNE G+D  RF ELLM SGVVLN  ++WVTFH GYDFGYLLKLL+ + LPE
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191

Query: 188 KQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTAS 247
           +   FFD +  +FPVVYDIK+LM FC +L+GGL K+AELL V+R+G+ HQAGSDSLLT  
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251

Query: 248 TFRKLRNTFFNGSIQKYAGVLYGL 266
           TF K++  FF GS+ KY+G L+GL
Sbjct: 252 TFIKMKEFFFTGSLLKYSGFLFGL 275

[Close]

BLAST of CmoCh05G003590 vs. ExPASy Swiss-Prot
Match: Q3ZC01 (CCR4-NOT transcription complex subunit 7 OS=Bos taurus OX=9913 GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 2.4e-81
Identity = 152/269 (56.51%), Postives = 195/269 (72.49%), Query Frame = 0


Query: 9   SIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDYNYQTLKDN 68
           S +I EVW  NL+EE   IR+++ K+NY+AMDTEFPGVV RP+G F++  DY YQ L+ N
Sbjct: 9   SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68

Query: 69  VDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIELLRQCGIDF 128
           VD+LK+IQLGLTF +E G  P  GT +   WQFNF+ FN+  D++A DSIELL   GI F
Sbjct: 69  VDLLKIIQLGLTFMNEQGEYPP-GTST---WQFNFK-FNLTEDMYAQDSIELLTTSGIQF 128

Query: 129 QKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLPEKQDGFFD 188
           +K+ EEGI+   F ELLM+SGVVL   V W++FHSGYDFGYL+K+LT   LPE++  FF+
Sbjct: 129 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 188

Query: 189 LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTASTFRKLRN 248
           ++ ++FPV+YD+K+LMK C +L GGL ++AE LE+ERIG  HQAGSDSLLT   F K+R 
Sbjct: 189 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 248

Query: 249 TFFNGSIQ--KYAGVLYGLG-----VENG 271
            FF   I   KY G LYGLG     V+NG
Sbjct: 249 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272

[Close]

BLAST of CmoCh05G003590 vs. ExPASy TrEMBL
Match: A0A6J1HCG0 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111462726 PE=3 SV=1)

HSP 1 Score: 571.2 bits (1471), Expect = 2.3e-159
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY
Sbjct: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
           STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN
Sbjct: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of CmoCh05G003590 vs. ExPASy TrEMBL
Match: A0A6J1KC39 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111491945 PE=3 SV=1)

HSP 1 Score: 565.8 bits (1457), Expect = 9.5e-158
Identity = 271/274 (98.91%), Postives = 272/274 (99.27%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY
Sbjct: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NYQTLKDNVDMLKLIQLGLTFSDENGN PTCGTD+FCIWQFNFREFNI SDIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNFPTCGTDNFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
           STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN
Sbjct: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of CmoCh05G003590 vs. ExPASy TrEMBL
Match: A0A5A7V9Q6 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002070 PE=3 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 1.6e-149
Identity = 258/274 (94.16%), Postives = 264/274 (96.35%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWN NLEEEFALIR IVDKFNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 61  MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 120

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDE+GNLPTCGTD FCIWQFNFREFNI SDIFASDSIEL
Sbjct: 121 NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 180

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 181 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 240

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
             Q GFF+LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 241 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 300

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
            TFRKLR+TFFNGSIQKYAGVLYGLGVENGQRTN
Sbjct: 301 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 334

[Close]

BLAST of CmoCh05G003590 vs. ExPASy TrEMBL
Match: A0A1S3BD45 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103488344 PE=3 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 1.6e-149
Identity = 258/274 (94.16%), Postives = 264/274 (96.35%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWN NLEEEFALIR IVDKFNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDE+GNLPTCGTD FCIWQFNFREFNI SDIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
             Q GFF+LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
            TFRKLR+TFFNGSIQKYAGVLYGLGVENGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of CmoCh05G003590 vs. ExPASy TrEMBL
Match: A0A0A0LMH2 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G382610 PE=3 SV=1)

HSP 1 Score: 537.3 bits (1383), Expect = 3.6e-149
Identity = 257/274 (93.80%), Postives = 264/274 (96.35%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWN NLEEEFALIR IVDKFNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDE+GNLPTCGTD FCIWQFNFREFNI SDIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
             Q GFF+LINVYFPV+YDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVLYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
            TFRKLR+TFFNGSIQKYAGVLYGLGVENGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of CmoCh05G003590 vs. NCBI nr
Match: XP_022962201.1 (probable CCR4-associated factor 1 homolog 7 [Cucurbita moschata] >XP_022962202.1 probable CCR4-associated factor 1 homolog 7 [Cucurbita moschata] >XP_023545657.1 probable CCR4-associated factor 1 homolog 7 [Cucurbita pepo subsp. pepo] >XP_023545658.1 probable CCR4-associated factor 1 homolog 7 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 571.2 bits (1471), Expect = 4.7e-159
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY
Sbjct: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
           STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN
Sbjct: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of CmoCh05G003590 vs. NCBI nr
Match: XP_022996818.1 (probable CCR4-associated factor 1 homolog 7 [Cucurbita maxima] >XP_022996819.1 probable CCR4-associated factor 1 homolog 7 [Cucurbita maxima])

HSP 1 Score: 565.8 bits (1457), Expect = 2.0e-157
Identity = 271/274 (98.91%), Postives = 272/274 (99.27%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY
Sbjct: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NYQTLKDNVDMLKLIQLGLTFSDENGN PTCGTD+FCIWQFNFREFNI SDIFASDSIEL
Sbjct: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNFPTCGTDNFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
           STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN
Sbjct: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of CmoCh05G003590 vs. NCBI nr
Match: XP_038885551.1 (probable CCR4-associated factor 1 homolog 7 [Benincasa hispida])

HSP 1 Score: 542.0 bits (1395), Expect = 3.0e-150
Identity = 259/274 (94.53%), Postives = 266/274 (97.08%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWN NLEEEFALIREIVD+FNYIAMDTEFPGVVLRPLGAFKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIREIVDEFNYIAMDTEFPGVVLRPLGAFKNINDF 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NY+TLKDNVDMLKLIQLGLTFSDENGNLPTCGTD FCIWQFNFREFNI +DIFASDSIEL
Sbjct: 61  NYRTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGNDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNNDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
             Q GFF+LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
            TFRKLR+TFFNGSIQKYAGVLYGLGV+NGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVDNGQRTN 274

[Close]

BLAST of CmoCh05G003590 vs. NCBI nr
Match: XP_008445259.1 (PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis melo])

HSP 1 Score: 538.5 bits (1386), Expect = 3.4e-149
Identity = 258/274 (94.16%), Postives = 264/274 (96.35%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWN NLEEEFALIR IVDKFNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 1   MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDE+GNLPTCGTD FCIWQFNFREFNI SDIFASDSIEL
Sbjct: 61  NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
             Q GFF+LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 181 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
            TFRKLR+TFFNGSIQKYAGVLYGLGVENGQRTN
Sbjct: 241 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 274

[Close]

BLAST of CmoCh05G003590 vs. NCBI nr
Match: KAA0064893.1 (putative CCR4-associated factor 1-like protein 7 [Cucumis melo var. makuwa])

HSP 1 Score: 538.5 bits (1386), Expect = 3.4e-149
Identity = 258/274 (94.16%), Postives = 264/274 (96.35%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MSILPKGDSIQIREVWN NLEEEFALIR IVDKFNYIAMDTEFPGVVLRPLG FKNIND+
Sbjct: 61  MSILPKGDSIQIREVWNANLEEEFALIRAIVDKFNYIAMDTEFPGVVLRPLGTFKNINDF 120

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           NY+TLKDNV+MLKLIQLGLTFSDE+GNLPTCGTD FCIWQFNFREFNI SDIFASDSIEL
Sbjct: 121 NYRTLKDNVEMLKLIQLGLTFSDEDGNLPTCGTDKFCIWQFNFREFNIGSDIFASDSIEL 180

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLN DVNWVTFHSGYDFGYLLKLLTCRGLP
Sbjct: 181 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNDDVNWVTFHSGYDFGYLLKLLTCRGLP 240

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
             Q GFF+LINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA
Sbjct: 241 NDQAGFFELINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 300

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQRTN 275
            TFRKLR+TFFNGSIQKYAGVLYGLGVENGQRTN
Sbjct: 301 CTFRKLRDTFFNGSIQKYAGVLYGLGVENGQRTN 334

[Close]

BLAST of CmoCh05G003590 vs. TAIR 10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 447.2 bits (1149), Expect = 9.5e-126
Identity = 208/272 (76.47%), Postives = 241/272 (88.60%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWNDNLE E ALIRE+VD F ++AMDTEFPG+V RP+G FK   +Y
Sbjct: 1   MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDS-FCIWQFNFREFNIVSDIFASDSIE 120
           +Y+TLK NV++LK+IQLGLTFSDE GNLPTCGTD+ +CIWQFNFREF++ SDI+A+DSIE
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120

Query: 121 LLRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGL 180
           LLRQ GIDF KNNE GID  RF ELLMSSG+VLN +V+WVTFHSGYDFGYLLKLLTC+ L
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180

Query: 181 PEKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLT 240
           PE Q GFF++I+VYFP VYDIKHLMKFCNSLHGGLNKLAELL+VER+G+CHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240

Query: 241 ASTFRKLRNTFFNGSIQKYAGVLYGLGVENGQ 272
           + TFRKL+  FF GS++KY+GVLYGLGVENGQ
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQ 272

[Close]

BLAST of CmoCh05G003590 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 441.8 bits (1135), Expect = 4.0e-124
Identity = 204/271 (75.28%), Postives = 235/271 (86.72%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWNDNL+EE  LIR++VD F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           +Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTD +CIWQFNFREF++ SDIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           L+Q GID  KN  +GID  RF ELLMSSG+VLN +V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q  FF LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQ 272
            TFRKL+  FF G + KY+GVLYGLGVENGQ
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271

[Close]

BLAST of CmoCh05G003590 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 441.8 bits (1135), Expect = 4.0e-124
Identity = 204/271 (75.28%), Postives = 235/271 (86.72%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWNDNL+EE  LIR++VD F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           +Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTD +CIWQFNFREF++ SDIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           L+Q GID  KN  +GID  RF ELLMSSG+VLN +V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q  FF LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVENGQ 272
            TFRKL+  FF G + KY+GVLYGLGVENGQ
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271

[Close]

BLAST of CmoCh05G003590 vs. TAIR 10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 438.0 bits (1125), Expect = 5.8e-123
Identity = 202/269 (75.09%), Postives = 233/269 (86.62%), Query Frame = 0


Query: 1   MSILPKGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDY 60
           MS+  K DSIQIREVWNDNL+EE  LIR++VD F Y+AMDTEFPG+V+RP+G FK+  DY
Sbjct: 1   MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60

Query: 61  NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIEL 120
           +Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTD +CIWQFNFREF++ SDIFA DSIEL
Sbjct: 61  HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120

Query: 121 LRQCGIDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLP 180
           L+Q GID  KN  +GID  RF ELLMSSG+VLN +V+WVTFHSGYDFGYLLKLLTC+ LP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180

Query: 181 EKQDGFFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTA 240
           + Q  FF LINVYFP VYDIKHLMKFCNSLHGGLNKLAELLEVER+G+CHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240

Query: 241 STFRKLRNTFFNGSIQKYAGVLYGLGVEN 270
            TFRKL+  FF G + KY+GVLYGLGVEN
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVEN 269

[Close]

BLAST of CmoCh05G003590 vs. TAIR 10
Match: AT5G10960.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 433.3 bits (1113), Expect = 1.4e-121
Identity = 203/268 (75.75%), Postives = 231/268 (86.19%), Query Frame = 0


Query: 6   KGDSIQIREVWNDNLEEEFALIREIVDKFNYIAMDTEFPGVVLRPLGAFKNINDYNYQTL 65
           K DSI IREVW+ NL EEFALIREIVDKF+YIAMDTEFPGVVL+P+  FK  ND NY+TL
Sbjct: 6   KEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTL 65

Query: 66  KDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNIVSDIFASDSIELLRQCG 125
           K+NVD+LKLIQ+GLTFSDENGNLPTCGTD FCIWQFNFREFNI  DI+AS+SIELLRQCG
Sbjct: 66  KENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCG 125

Query: 126 IDFQKNNEEGIDVNRFGELLMSSGVVLNADVNWVTFHSGYDFGYLLKLLTCRGLPEKQDG 185
           IDF+KN E+GIDV RFGEL+MSSG+VLN  ++WVTFH GYDFGYL+KLLTC+ LP KQ  
Sbjct: 126 IDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQAD 185

Query: 186 FFDLINVYFPVVYDIKHLMKFCNSLHGGLNKLAELLEVERIGVCHQAGSDSLLTASTFRK 245
           FF L+ VYFP VYDIKHLM FCN L GGLN+LAEL+ VER+G+CHQAGSDSLLT  +FRK
Sbjct: 186 FFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTLGSFRK 245

Query: 246 LRNTFFNGSIQKYAGVLYGLGVENGQRT 274
           L+  +F GS +KY GVLYGLGVE+G  T
Sbjct: 246 LKERYFPGSTEKYTGVLYGLGVEDGTTT 273

The following BLAST results are available for this feature:

BLAST of CmoCh05G003590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKZ2	1.3e-124	76.47	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SAI2	5.6e-123	75.28	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LEU4	2.0e-120	75.75	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9S9P2	3.7e-98	64.39	Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q3ZC01	2.4e-81	56.51	CCR4-NOT transcription complex subunit 7 OS=Bos taurus OX=9913 GN=CNOT7 PE=2 SV=...	[more]

BLAST of CmoCh05G003590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HCG0	2.3e-159	100.00	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111462726 PE=3...	[more]
A0A6J1KC39	9.5e-158	98.91	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111491945 PE=3 S...	[more]
A0A5A7V9Q6	1.6e-149	94.16	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A1S3BD45	1.6e-149	94.16	Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103488344 PE=3 SV=1	[more]
A0A0A0LMH2	3.6e-149	93.80	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G382610 PE=3 SV...	[more]

BLAST of CmoCh05G003590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962201.1	4.7e-159	100.00	probable CCR4-associated factor 1 homolog 7 [Cucurbita moschata] >XP_022962202.1...	[more]
XP_022996818.1	2.0e-157	98.91	probable CCR4-associated factor 1 homolog 7 [Cucurbita maxima] >XP_022996819.1 p...	[more]
XP_038885551.1	3.0e-150	94.53	probable CCR4-associated factor 1 homolog 7 [Benincasa hispida]	[more]
XP_008445259.1	3.4e-149	94.16	PREDICTED: probable CCR4-associated factor 1 homolog 7 [Cucumis melo]	[more]
KAA0064893.1	3.4e-149	94.16	putative CCR4-associated factor 1-like protein 7 [Cucumis melo var. makuwa]	[more]

BLAST of CmoCh05G003590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32070.1	9.5e-126	76.47	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	4.0e-124	75.28	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	4.0e-124	75.28	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.3	5.8e-123	75.09	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G10960.1	1.4e-121	75.75	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 161..242 e-value: 1.3E-5 score: 24.7
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 15..136 e-value: 1.3E-11 score: 44.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..269 e-value: 5.7E-100 score: 335.9
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 1..274
None	No IPR available	PANTHER	PTHR10797:SF68	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED	coord: 1..274
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 12..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G003590.1	CmoCh05G003590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity