CmoCh05G003370 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G003370
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionTranscription initiation factor TFIID subunit 10
LocationCmo_Chr05: 1503643 .. 1506591 (-)
RNA-Seq ExpressionCmoCh05G003370
SyntenyCmoCh05G003370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGCTTCTCAAATCGAGGAGTAATTCGAACGAGCTTCGTTCGAAGAGAGGGAAGACGAAGAAGATGAACCATAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTGTAAGATCTCATTTGGATGCTGCTTAACTCCGAGTTGATTCTTTCCTTCCATGCGTTTTTCTATAAGTTCAAATCACGTCGGTGTTTTCTTTTCGGCTATCATTCACAGATTCCCGACGAGTTGGTGGAACATTACTTAGGAAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGTAGGTACCTTTTCGTTTGTTTTTATTATTTTCGTTCATCAAAACCCTAGGTTTAAAACGCGGTTTTTCGATCGACAGATGAGATGGATTTATCTTTTTTTCCTAATTTTATGATTGGTATTGCTTTATTTTCACAATTTAATCGTACTTGGGAATTTTCTATTCGGTTGGTTGGTTGTTGACTGCTAATATCGATCAAAGTGATGCTTAATCCTGCCGGGGGTTGCAATTAGGGGATTTCTTATTTCGAGTATTTTTCTTTTTTAAAGAGACAATGTTGGTTATTGTTGCTGATTTTTTGTTGTTGGGAAGTTGCCTCTACATTACTTAATCTCTATGAATGAACCGAGTATGAGATTGGAGGACAGTTCCCACCTCATTCCCAATGAAGAAATGGGAATTCTTCGCCCTGGGGTAAATTCTTGATTATTCTTTGTAGGTCGGGCGTGACATGTGCTTACCTGGTTTGTTCTGTAGTAGTGTTATTGAACATGAAGACGGCCTTTTTAGTGTTTATAGTGGTATTCTGGGTAGCGGTCATTGCTTCGGACTTTTGATTTCAATGAATGGTGTTATTAGTGGCTGCATTTCTATGCTGAGAATTGTGCACTGGGGAAGTTCATCTAGTTCTTGAACTTTTTCCTGTTCTATTCCAACTATTCTTCTACTCTTGTTTTCCATTTCATTTCGTAGTTTGTTTTAATCTTCTAAAGTTGGGCGTTTAAAATTTTTCAAAATGGAGAGGATATAAGTCATTTAAGATCTTTGATTATTATGAGATGGATTCTTTAACCTTGGCCTGGTTAAGTGCTTTCTAGGTAAAGAGATTCTCAGTTTTGATTGGCGTTAGTTGCGTTCACCATCGCAAGAAATATTTGTAATTAGAAATTGGCTTTTTATTTGTTGCGTTCACTTTTGCAGGATCAGGCTTGTTGCTGTTGCTACGCAGAAGTTCGTTGCAGATGTTGCAAGTGATGCTCTCCAGTATGCTTGCTTTCTTCTTTCTTATTTTGCATGAGGGGTGCAAGTAAAATATGATCATAACTTGAGTTGCAGACCTTATGATAAAAAAAAAATTAAAAAAAAACTTGAGTTGCAAACTTTACATTTAATTACATTTAACGATTTACTCCAAGTAATCCTCTACAGCTGACATCATCACCTATTAATTTTTCTTCTTCAACCCCCATGACTGCGTTATTATTGTTTGGAAGGCGTTTAATGACTACCATCTCTTTCCCATGCCCTTTTATGTACCTGGGGAGATTTTCTTTGTGGGTTTTCAAATGCTTTTGTAACAGTTGGGGTATTTAGCTGCTTGGGTTGGTAAGAGTTTTTCTAGGTTCATCAACGTCTCTTTGTAGGTTGCGGCAACAGTCTTTTTTGTAATTATCTATAAGGTCTTATTTTACTTAATTGGTTTCTTTAATTTTTCTCCTATTTCATGGGCTCCTTTTTTGTGTACTCTCTTTGAGAAAGTTTAGTTTCCCAATAATAATAATAATAATAATAATAATAAAACTTATTTGGCTGTGCAATGTAGGCATTGTAAGGCGAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGTGCATTTTTTGTAACACAGGGTCTCTTGATTGATAAATTATTTGGCCAGTCTAACATTTTGCTGGTCCAGGATAAGCGCTTAATATTGACCATGGATGATCTCTCGAAGGCTCTTCGTGAGGTAAGCTCAAAATGTTATTTATTTCTCATTCCTTTTTCAATTATTAAGCTCTTGTGCTTGATGGTTATTTCATATATAGGCTTAAGAGATCATTAGTTTGATTCTGGTATGCATTCTTCTTTTTAAAAGGTGCTATAGGTGGGTTCTTTTTAACATATGCTCGATTTTTATTTGTGTAATTAACTCCTGGCAGGCTGTAATCTTGTGAAGAATTTGTGATTTTTTTTTAGTTCTTCAAATTGCATGGTGCATCCTCAACATTATGCAGTTTACACTTGGTGGGGAGTCTTAAAAATGTGCATTTGTAATTGATACCCTTTGATCATAGACATTGGAAGATCTAGTAGTTTCTTATCCAAACTAACCGTCTTGTTGGTACTTGATGAACAGTATGGCGTGAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACCGGAGTGGATTCTACTTCCAGAGAGGAATGAGTTGGAATAACGGTTAAAATGTCTCATCGTTGTGTTCGTGAATATACTGATGCATCATAGTTCAGGTTGGAGTACTCTTGCTGCCTGCCATGCCCAATTATTAGTCATGTTAGTATTGCTATCATTAAGTAGCCGTCTGTGAACTGTCATTGCAGTAGACATGTTAAGCGTTTTCTACATGTCTACTAAATGAAACTGTGCATAACGAAACCCAAAACATCATTCTTGTTCATACAAGGTTATGTTATCATGATGCATTCTCCATGGATTTGCAGCTTGTAAGAACTCTAGTCGATCTTATTTTAACTCTTAGAAGTGAGGATAAGTAACGCGACCATGTCTCGGAGATCTGAATTTTATTATTATGTGTGCAAATCTTTGAGTGGGGTTTGAACGGATCTTCCCAATATGAACGACAAAGTGG

mRNA sequence

AAAGCTTCTCAAATCGAGGAGTAATTCGAACGAGCTTCGTTCGAAGAGAGGGAAGACGAAGAAGATGAACCATAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTATTCCCGACGAGTTGGTGGAACATTACTTAGGAAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTTGCTGTTGCTACGCAGAAGTTCGTTGCAGATGTTGCAAGTGATGCTCTCCAGCATTGTAAGGCGAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGATGATCTCTCGAAGGCTCTTCGTGAGTATGGCGTGAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACCGGAGTGGATTCTACTTCCAGAGAGGAATGAGTTGGAATAACGGTTAAAATGTCTCATCGTTGTGTTCGTGAATATACTGATGCATCATAGTTCAGGTTGGAGTACTCTTGCTGCCTGCCATGCCCAATTATTAGTCATGTTAGTATTGCTATCATTAAGTAGCCGTCTGTGAACTGTCATTGCAGTAGACATGTTAAGCGTTTTCTACATGTCTACTAAATGAAACTGTGCATAACGAAACCCAAAACATCATTCTTGTTCATACAAGGTTATGTTATCATGATGCATTCTCCATGGATTTGCAGCTTGTAAGAACTCTAGTCGATCTTATTTTAACTCTTAGAAGTGAGGATAAGTAACGCGACCATGTCTCGGAGATCTGAATTTTATTATTATGTGTGCAAATCTTTGAGTGGGGTTTGAACGGATCTTCCCAATATGAACGACAAAGTGG

Coding sequence (CDS)

ATGAACCATAGCCAACAAGCGACAGGGAGCAGGCACGACGATGACGCAGCGCTCTCCGAGTTTCTAGCATCTCTAATGGAGTATACTCCCACTATTCCCGACGAGTTGGTGGAACATTACTTAGGAAAGAGTGGATTTCAGTGTCCCGACGTTCGATTGATCAGGCTTGTTGCTGTTGCTACGCAGAAGTTCGTTGCAGATGTTGCAAGTGATGCTCTCCAGCATTGTAAGGCGAGACAGGCAGCAGTAGTGAAAGACAAAAGGGATAAACAACAAAAGGATAAGCGCTTAATATTGACCATGGATGATCTCTCGAAGGCTCTTCGTGAGTATGGCGTGAATGTGAAACATCAAGAATATTTTGCTGATAGCCCTTCAACCGGAGTGGATTCTACTTCCAGAGAGGAATGA

Protein sequence

MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYFADSPSTGVDSTSREE
Homology
[Close]
BLAST of CmoCh05G003370 vs. ExPASy Swiss-Prot
Match: O04173 (Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana OX=3702 GN=TAF10 PE=1 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.1e-58
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTM+DLSKALREYGVNVKH EY
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALREYGVNVKHPEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  +R+E
Sbjct: 121 FADSPSTGMDPATRDE 134

[Close]
BLAST of CmoCh05G003370 vs. ExPASy Swiss-Prot
Match: Q12962 (Transcription initiation factor TFIID subunit 10 OS=Homo sapiens OX=9606 GN=TAF10 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.3e-23
Identity = 51/104 (49.04%), Postives = 74/104 (71.15%), Query Frame = 0 

Query: 18  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 77
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 78  ARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYF 122
            +  A    +   + KD++  LTM+DL+ AL EYG+NVK   YF
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217

[Close]
BLAST of CmoCh05G003370 vs. ExPASy Swiss-Prot
Match: Q8K0H5 (Transcription initiation factor TFIID subunit 10 OS=Mus musculus OX=10090 GN=Taf10 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.3e-23
Identity = 51/104 (49.04%), Postives = 74/104 (71.15%), Query Frame = 0 

Query: 18  LSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCK 77
           L +FL  L +YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++D+A+DALQHCK
Sbjct: 116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCK 175

Query: 78  ARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYF 122
            +  A    +   + KD++  LTM+DL+ AL EYG+NVK   YF
Sbjct: 176 MKGTASGSSR--SKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217

[Close]
BLAST of CmoCh05G003370 vs. ExPASy Swiss-Prot
Match: Q9XZT7 (Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster OX=7227 GN=Taf10b PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.9e-20
Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 0 

Query: 2   NHSQQATG------SRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIR 61
           +H Q + G       R    + LS+F++ L +YTP IPD +  HYL   GFQ  D R++R
Sbjct: 19  SHGQSSGGGGGGDRDRTTPSSHLSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVR 78

Query: 62  LVAVATQKFVADVASDALQHCKAR-QAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVN 121
           L+++A QK+++D+  DALQH KAR            + KD++  LTM+DL  AL +YG+N
Sbjct: 79  LISLAAQKYMSDIIDDALQHSKARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADYGIN 138

[Close]
BLAST of CmoCh05G003370 vs. ExPASy Swiss-Prot
Match: Q9U5W9 (Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster OX=7227 GN=Taf10 PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-18
Identity = 44/114 (38.60%), Postives = 71/114 (62.28%), Query Frame = 0 

Query: 14  DDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVATQKFVADVASDAL 73
           +++ + E +  L +Y+PTIPD L  H L  +GF   D +++RLV+V+ QKF++D+A+DAL
Sbjct: 53  EESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSAQKFISDIANDAL 112

Query: 74  QHCKARQAAV------VKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEYF 122
           QHCK R   +         K  K  KD++  L M+DL  AL ++G+ ++  +YF
Sbjct: 113 QHCKTRTTNIQHSSGHSSSKDKKNPKDRKYTLAMEDLVPALADHGITMRKPQYF 166

[Close]
BLAST of CmoCh05G003370 vs. ExPASy TrEMBL
Match: A0A6J1KB50 (Transcription initiation factor TFIID subunit 10 OS=Cucurbita maxima OX=3661 GN=LOC111492283 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.5e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]
BLAST of CmoCh05G003370 vs. ExPASy TrEMBL
Match: A0A6J1HHI7 (Transcription initiation factor TFIID subunit 10 OS=Cucurbita moschata OX=3662 GN=LOC111462992 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.5e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]
BLAST of CmoCh05G003370 vs. ExPASy TrEMBL
Match: A0A0A0LPV6 (Transcription initiation factor TFIID subunit 10 OS=Cucumis sativus OX=3659 GN=Csa_2G383360 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.7e-68
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]
BLAST of CmoCh05G003370 vs. ExPASy TrEMBL
Match: A0A1S3BD75 (Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC103488368 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.0e-67
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]
BLAST of CmoCh05G003370 vs. ExPASy TrEMBL
Match: A0A6J1BVJ5 (Transcription initiation factor TFIID subunit 10 OS=Momordica charantia OX=3673 GN=LOC111005104 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.0e-65
Identity = 129/136 (94.85%), Postives = 132/136 (97.06%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQ T  RHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQGTEGRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQA++VKDKRDKQQKDKRLILTM+DLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQASIVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVD TSREE
Sbjct: 121 FADSPSTGVDPTSREE 136

[Close]
BLAST of CmoCh05G003370 vs. NCBI nr
Match: KAG6598532.1 (Transcription initiation factor TFIID subunit 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 267.3 bits (682), Expect = 7.2e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 292 MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 351

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY
Sbjct: 352 TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 411

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 412 FADSPSTGVDSTSREE 427

[Close]
BLAST of CmoCh05G003370 vs. NCBI nr
Match: XP_022962589.1 (transcription initiation factor TFIID subunit 10 [Cucurbita moschata] >XP_022997339.1 transcription initiation factor TFIID subunit 10 [Cucurbita maxima] >XP_023547186.1 transcription initiation factor TFIID subunit 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267.3 bits (682), Expect = 7.2e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]
BLAST of CmoCh05G003370 vs. NCBI nr
Match: XP_004138687.1 (transcription initiation factor TFIID subunit 10 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 1.6e-67
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH+QQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHNQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]
BLAST of CmoCh05G003370 vs. NCBI nr
Match: XP_008445293.1 (PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis melo])

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-67
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALREYGVNVKHQEY
Sbjct: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 121 FADSPSTGVDSTSREE 136

[Close]
BLAST of CmoCh05G003370 vs. NCBI nr
Match: XP_038886703.1 (transcription initiation factor TFIID subunit 10 isoform X1 [Benincasa hispida])

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-67
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA
Sbjct: 20  MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 79

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTM+DLSKALREYGVNVKHQEY
Sbjct: 80  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMEDLSKALREYGVNVKHQEY 139

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTGVDSTSREE
Sbjct: 140 FADSPSTGVDSTSREE 155

[Close]
BLAST of CmoCh05G003370 vs. TAIR 10
Match: AT4G31720.2 (TBP-associated factor II 15 )

HSP 1 Score: 224.2 bits (570), Expect = 6.5e-59
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTM+DLSKALREYGVNVKH EY
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALREYGVNVKHPEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  +R+E
Sbjct: 121 FADSPSTGMDPATRDE 134

[Close]
BLAST of CmoCh05G003370 vs. TAIR 10
Match: AT4G31720.1 (TBP-associated factor II 15 )

HSP 1 Score: 224.2 bits (570), Expect = 6.5e-59
Identity = 113/136 (83.09%), Postives = 125/136 (91.91%), Query Frame = 0 

Query: 1   MNHSQQATGSRHDDDAALSEFLASLMEYTPTIPDELVEHYLGKSGFQCPDVRLIRLVAVA 60
           MNH QQ+  ++H+DDAAL+EFLASLM+YTPTIPD+LVEHYL KSGFQCPDVRLIRLVAVA
Sbjct: 1   MNHGQQSGEAKHEDDAALTEFLASLMDYTPTIPDDLVEHYLAKSGFQCPDVRLIRLVAVA 60

Query: 61  TQKFVADVASDALQHCKARQAAVVKDKRDKQQKDKRLILTMDDLSKALREYGVNVKHQEY 120
           TQKFVADVASDALQHCKAR A VVKDK  KQQKDKRL+LTM+DLSKALREYGVNVKH EY
Sbjct: 61  TQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTMEDLSKALREYGVNVKHPEY 120

Query: 121 FADSPSTGVDSTSREE 137
           FADSPSTG+D  +R+E
Sbjct: 121 FADSPSTGMDPATRDE 134

The following BLAST results are available for this feature:
BLAST of CmoCh05G003370 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O041739.1e-5883.09Transcription initiation factor TFIID subunit 10 OS=Arabidopsis thaliana OX=3702... [more]
Q129627.3e-2349.04Transcription initiation factor TFIID subunit 10 OS=Homo sapiens OX=9606 GN=TAF1... [more]
Q8K0H57.3e-2349.04Transcription initiation factor TFIID subunit 10 OS=Mus musculus OX=10090 GN=Taf... [more]
Q9XZT79.9e-2039.68Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster OX=... [more]
Q9U5W97.1e-1838.60Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster OX=7... [more]
BLAST of CmoCh05G003370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KB503.5e-68100.00Transcription initiation factor TFIID subunit 10 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1HHI73.5e-68100.00Transcription initiation factor TFIID subunit 10 OS=Cucurbita moschata OX=3662 G... [more]
A0A0A0LPV67.7e-6899.26Transcription initiation factor TFIID subunit 10 OS=Cucumis sativus OX=3659 GN=C... [more]
A0A1S3BD751.0e-6799.26Transcription initiation factor TFIID subunit 10 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1BVJ58.0e-6594.85Transcription initiation factor TFIID subunit 10 OS=Momordica charantia OX=3673 ... [more]
BLAST of CmoCh05G003370 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598532.17.2e-68100.00Transcription initiation factor TFIID subunit 10, partial [Cucurbita argyrosperm... [more]
XP_022962589.17.2e-68100.00transcription initiation factor TFIID subunit 10 [Cucurbita moschata] >XP_022997... [more]
XP_004138687.11.6e-6799.26transcription initiation factor TFIID subunit 10 [Cucumis sativus][more]
XP_008445293.12.1e-6799.26PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Cucumis ... [more]
XP_038886703.12.1e-6799.26transcription initiation factor TFIID subunit 10 isoform X1 [Benincasa hispida][more]
BLAST of CmoCh05G003370 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G31720.26.5e-5983.09TBP-associated factor II 15 [more]
AT4G31720.16.5e-5983.09TBP-associated factor II 15 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPRINTSPR01443TFIID30KDSUBcoord: 96..118
score: 54.78
coord: 50..72
score: 64.35
coord: 30..46
score: 60.0
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPFAMPF03540TFIID_30kDacoord: 30..79
e-value: 1.0E-24
score: 86.2
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPIRSFPIRSF017246TFIID_TAF10coord: 1..122
e-value: 1.3E-53
score: 180.0
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitPANTHERPTHR21242TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10coord: 5..121
IPR003923Transcription initiation factor TFIID, 23-30kDa subunitCDDcd07982TAF10coord: 16..121
e-value: 8.55403E-57
score: 170.484

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G003370.1CmoCh05G003370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016573 histone acetylation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006413 translational initiation
biological_process GO:0006352 DNA-templated transcription, initiation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000124 SAGA complex
cellular_component GO:0005669 transcription factor TFIID complex
cellular_component GO:0005634 nucleus
molecular_function GO:1990841 promoter-specific chromatin binding
molecular_function GO:0016251 RNA polymerase II general transcription initiation factor activity
molecular_function GO:0003743 translation initiation factor activity