CmoCh05G002640 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G002640
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionSm protein F
LocationCmo_Chr05: 1131687 .. 1134927 (+)
RNA-Seq ExpressionCmoCh05G002640
SyntenyCmoCh05G002640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACAAGCCCTAGAGCGAGAGCGCCATTTTCTTCGACTCCTTGTTCTTTTGAGCTCCACAGATTTCAAACAAGCCCTTGCTCGCCATTTCGGAACCATGGTAACTAAGAATTTTCTTTTTTCCTTGCTTTTCGGTTCTGTATAATGTTTTCGTTGTTCTTTTTACCCTTTTTTTCCCCTTCGATTCGATGTGGAATGAGTGTTAATGTAGCCGTATGTTGTATCAGATAGTTGGCTGAAGTTTTCGATTTATTTTACTGATTCTTCTGTTATGTAGATTCTTGGCCGTTTATTTATTTTTTCCTCCATTTTGCCTTGATTCGTAAATGACGCTTAATTCTATGATATGATTGTTTGGACGTTGTAGAGCATCCCAGTTAACCCGAAGCCGTTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGGATGGAGTACAAAGGTTTGGTTCTATCTGCTGCTTGTTTTCCTCGTTTCTCTTGCCTGCTGATGTTTGTACTCACTTTCGTTTACATTTCAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTACAGGTGTGTTTCTACTTGCATTGACATTAATTTAGTTAGTTCTTTTCGATTACGATCATATTCTCGTTGTTTTTATGTCTCCCTCTGCTGCGGAGCTTTGTTTACCAAGAGTCCGTATACTATTTTGACTGTAGTGAATTTACTCGATATGAGAAGGGAACTTAGTCTAATCGTCTTTTTACTTGAAACATTGTTCAAACGTTGCACTAACTGTTTCAATGCCGTTCATCTCTGAATCTAACTTGATGTGTTCTGCTCATATTGAAAGTTCCCCCTTACAACTATTTATCATTGGCTTTCTCTGGAAAACTAGTTTGAAAACAGCGTTGGCCATTTTTGTTTTCATAATTTTTTGTAAGAAATGCTTTGGAATAATTTGTAAATTTTATTATTTATTGTGCATGTCGAAACTGGTATACATAGTCAAGTGGTTTAGGCATCTCTACTTCGTTTAAGAGGTCGTTGGTTTCACTCCTCACTCCCACATTTGATTTAATATTCTCGAAAGGGAAATTAAGTTACAACTTTTTAAATGCAGCTTGCCAATACTGAGGAATATATCGACGGACAATGTACTGGGAGTTTGGGAGAAATATTGATCAGGTAACCTTTTTTTTGTGATTGGAAATCACAATATCTAGTGCATCAATGCTTATTTGTTGATTGTAATGTGATTGGAGTGTTGTTTGAAATATCATTAGACTAATAAGTGTATATTAGTGATTGAATAGAGAAGTTGTGGTGATTCGATATAAATAGTATGGGATGGAAAGGAGAGTAGAGAATTTTTTAGTGGTTTAGGCTTCAGTGAGTATAGTCACGAGAGGGAAGGTTCCAAGTACCTCAAATATTTTGTTATCTTGGTGTTCTGTTATGTTTTATATTTCAGTATATTTGGTTATATCAAATCTACTCCAGAGAAATTCGATAATGGCCATGGGGTCAGATGAAAATTTATGTGAACAGATGTTGATGTTTTTATGTGAAGAGAATCGTTCCCTGAAGTAATTGGCAGAGGTAATGGATTCAATGTTCCAATCTTTTCGAGATAGAGTGGCACAGAATTTTAGTGAAATGAAAGCGGAGATTATAGAAATAAGAAAAGAGATCAGATGGGCAAAAACAAAGAGGTAGACATTCATATTGGAATCAGATTTCTCATCTCGCAAGGATACAAAAAAGGTTGATGATGAAGAGAGTGAGACGGCCACAAAAACATGGAACAAACCTCAGAATCCTCACATGAGGAACAAGAGTGAGAATGAGAAGTCGATGAAGAAAAAAGTAAGAATGGATTAAGGATTAATGGAGCTTGTATGGAAGCAAAGGGGAGTGTGCAAAAGAGCTGTAGAAGGAACCAAAAATACGCCTACCAAAAAACACTTAATGTATGGTTTAGATCGAGGGGAGGTTAACCAATAAACAATTGCTATTTCTATGGCTGGAGATTAGTTTGATGTTTGAAAACCTTTGAGTGGGTTGGGAAGGCATTCAAGTTAAGAAAGGAAGGATTTCTGGAGAGATTGTCAGCAATTGCTACTTCTATGGCCAGAGATAAACGCTTGGGGAGGCGCTAACGCAATCATCATGAAGAGAGGTGTTTGAGGGATCAGAGAGGAACTGCTGTGCAAAAAATAGAAATAACAAAAGTCGTGCAAGAGAGGCCAATGCTGGTGGAAAATGCAGGAGCTGTTGATGGAGATGGGGTCGTGGAGAAGGCATCAACACAAATTTCGTCAAGATGTATTCGTGGATATGAAGTTGTCTAGTCACGCGAATTGTTAGAAGAAAAAAAAGGTCCATTTCTTCGTAACTACAAAAATAAGGCTCATGCTATACAAGTTGAATTTTGGGGTGTGTTAACTTCTATATTTGAACTCAAGAACTGACCCACTACTAAAAGGAAAACCCTAGGAGCCATAGGTCCACATGCTCTCTTTTCACCTGCGTTGTCGCACATCCTTATTTCTATTCCCAACACTGCCGATTGTTGCCTGTGATATCTCCTCTACATGCCACTGCTTTCCGCACAAGGTCATCAAAGCACAACCAGTTGGGTGTTTGAAAGGGGAACGGATTTAGCCTTGAGAATGAGTATGCCGAGGAGAGATGTTCCAAATGCCTCGTAACTTTGGTTATCTTTTACAATTTAGTATACTTGTTTTTATCATAATATGAATGGCTGTTTATGACATAAATGACTCGAGCGAGAAAATGTAACAGACAACATGTAGAATAAGGTCGTACGCATGCATTTTTCTTTCTACGAGGACTATTAAGGATATGTTAGTAAGTTATTTGTGCTTATCGATGAATTCTTGCACAGATTCTCATATCGAACATGGCAATGTTCCTACTTTTTCGTGACAGGTGTAACAACGTTCTTTACCTTCGCGGAGTACCGGAGGATGAAGAGATAGAAGATGCCGAGCGTGACTAGCATGTAAATTTTTAGCAGCTTTTTGATGGCGTAGCAGTAGTGAAGTTTTATGATGTTATTGATACTATTTATGGCATCTCAAGGGACAGGAACACTCCAATTTGGTGGATTTCAAAACCTGCAACAATCGGTTTGCTATCATACAAGGATGTTTTTATTTTTAAAATTGACCATTATTCTTGATCCATAAAATTTTTAAAAAATATCTCAAAATTTCTTAACCCTCAATTCACG

mRNA sequence

AAACAAGCCCTAGAGCGAGAGCGCCATTTTCTTCGACTCCTTGTTCTTTTGAGCTCCACAGATTTCAAACAAGCCCTTGCTCGCCATTTCGGAACCATGAGCATCCCAGTTAACCCGAAGCCGTTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGGATGGAGTACAAAGGTTTGGTTCTATCTGCTGCTTGTTTTCCTCGTTTCTCTTGCCTGCTGATGTTTGTACTCACTTTCGTTTACATTTCAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTACAGCTTGCCAATACTGAGGAATATATCGACGGACAATGTACTGGGAGTTTGGGAGAAATATTGATCAGGTGTAACAACGTTCTTTACCTTCGCGGAGTACCGGAGGATGAAGAGATAGAAGATGCCGAGCGTGACTAGCATGTAAATTTTTAGCAGCTTTTTGATGGCGTAGCAGTAGTGAAGTTTTATGATGTTATTGATACTATTTATGGCATCTCAAGGGACAGGAACACTCCAATTTGGTGGATTTCAAAACCTGCAACAATCGGTTTGCTATCATACAAGGATGTTTTTATTTTTAAAATTGACCATTATTCTTGATCCATAAAATTTTTAAAAAATATCTCAAAATTTCTTAACCCTCAATTCACG

Coding sequence (CDS)

ATGAGCATCCCAGTTAACCCGAAGCCGTTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGGATGGAGTACAAAGGTTTGGTTCTATCTGCTGCTTGTTTTCCTCGTTTCTCTTGCCTGCTGATGTTTGTACTCACTTTCGTTTACATTTCAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTACAGCTTGCCAATACTGAGGAATATATCGACGGACAATGTACTGGGAGTTTGGGAGAAATATTGATCAGGTGTAACAACGTTCTTTACCTTCGCGGAGTACCGGAGGATGAAGAGATAGAAGATGCCGAGCGTGACTAG

Protein sequence

MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Homology
[Close]
BLAST of CmoCh05G002640 vs. ExPASy Swiss-Prot
Match: Q9SUM2 (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At4g30220 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.2e-36
Identity = 76/112 (67.86%), Postives = 83/112 (74.11%), Query Frame = 0 

Query: 2   SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVS 61
           +IPVNPKPFLNNLTGKTV+VKLKWGMEYK                          GFL S
Sbjct: 3   TIPVNPKPFLNNLTGKTVIVKLKWGMEYK--------------------------GFLAS 62

Query: 62  VDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 114
           VDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++D
Sbjct: 63  VDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQD 88

[Close]
BLAST of CmoCh05G002640 vs. ExPASy Swiss-Prot
Match: Q3T0Z8 (Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2)

HSP 1 Score: 128.3 bits (321), Expect = 5.7e-29
Identity = 64/106 (60.38%), Postives = 73/106 (68.87%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MS+P+NPKPFLN LTGK V+VKLKWGMEYK                          G+LV
Sbjct: 1   MSLPLNPKPFLNGLTGKPVMVKLKWGMEYK--------------------------GYLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE 107
           SVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Sbjct: 61  SVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of CmoCh05G002640 vs. ExPASy Swiss-Prot
Match: P62306 (Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.7e-29
Identity = 64/106 (60.38%), Postives = 73/106 (68.87%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MS+P+NPKPFLN LTGK V+VKLKWGMEYK                          G+LV
Sbjct: 1   MSLPLNPKPFLNGLTGKPVMVKLKWGMEYK--------------------------GYLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE 107
           SVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Sbjct: 61  SVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of CmoCh05G002640 vs. ExPASy Swiss-Prot
Match: P62307 (Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.7e-29
Identity = 64/106 (60.38%), Postives = 73/106 (68.87%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MS+P+NPKPFLN LTGK V+VKLKWGMEYK                          G+LV
Sbjct: 1   MSLPLNPKPFLNGLTGKPVMVKLKWGMEYK--------------------------GYLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE 107
           SVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Sbjct: 61  SVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of CmoCh05G002640 vs. ExPASy Swiss-Prot
Match: P62321 (Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.7e-29
Identity = 64/106 (60.38%), Postives = 73/106 (68.87%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MS+P+NPKPFLN LTGK V+VKLKWGMEYK                          G+LV
Sbjct: 1   MSLPLNPKPFLNGLTGKPVMVKLKWGMEYK--------------------------GYLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE 107
           SVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Sbjct: 61  SVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEE 80

[Close]
BLAST of CmoCh05G002640 vs. ExPASy TrEMBL
Match: A0A6J1KQT2 (Sm protein F OS=Cucurbita maxima OX=3661 GN=LOC111496373 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.1e-38
Identity = 87/113 (76.99%), Postives = 87/113 (76.99%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLV
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK--------------------------GFLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 114
           SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Sbjct: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]
BLAST of CmoCh05G002640 vs. ExPASy TrEMBL
Match: A0A6J1HD26 (Sm protein F OS=Cucurbita moschata OX=3662 GN=LOC111462396 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.1e-38
Identity = 87/113 (76.99%), Postives = 87/113 (76.99%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLV
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK--------------------------GFLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 114
           SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Sbjct: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]
BLAST of CmoCh05G002640 vs. ExPASy TrEMBL
Match: A0A6J1GJI4 (Sm protein F OS=Cucurbita moschata OX=3662 GN=LOC111454427 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.3e-38
Identity = 86/113 (76.11%), Postives = 87/113 (76.99%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLV
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK--------------------------GFLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 114
           SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE+EDAERD
Sbjct: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD 87

[Close]
BLAST of CmoCh05G002640 vs. ExPASy TrEMBL
Match: A0A1S3CKH5 (Sm protein F OS=Cucumis melo OX=3656 GN=LOC103501840 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.9e-37
Identity = 86/113 (76.11%), Postives = 86/113 (76.11%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLV
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK--------------------------GFLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 114
           SVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Sbjct: 61  SVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]
BLAST of CmoCh05G002640 vs. ExPASy TrEMBL
Match: A0A5D3DWN8 (Sm protein F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00490 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.9e-37
Identity = 86/113 (76.11%), Postives = 86/113 (76.11%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLV
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK--------------------------GFLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 114
           SVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Sbjct: 61  SVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]
BLAST of CmoCh05G002640 vs. NCBI nr
Match: XP_022961705.1 (probable small nuclear ribonucleoprotein F [Cucurbita moschata] >XP_022996693.1 probable small nuclear ribonucleoprotein F [Cucurbita maxima] >XP_023002564.1 probable small nuclear ribonucleoprotein F [Cucurbita maxima] >XP_023546841.1 probable small nuclear ribonucleoprotein F [Cucurbita pepo subsp. pepo] >KAG7029399.1 putative small nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.5 bits (423), Expect = 6.4e-38
Identity = 87/113 (76.99%), Postives = 87/113 (76.99%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLV
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK--------------------------GFLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 114
           SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Sbjct: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]
BLAST of CmoCh05G002640 vs. NCBI nr
Match: XP_022951684.1 (probable small nuclear ribonucleoprotein F [Cucurbita moschata] >XP_023538350.1 probable small nuclear ribonucleoprotein F [Cucurbita pepo subsp. pepo] >XP_023538351.1 probable small nuclear ribonucleoprotein F [Cucurbita pepo subsp. pepo] >KAG6585581.1 putative small nuclear ribonucleoprotein F, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020496.1 putative small nuclear ribonucleoprotein F [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37
Identity = 86/113 (76.11%), Postives = 87/113 (76.99%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLV
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK--------------------------GFLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 114
           SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE+EDAERD
Sbjct: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD 87

[Close]
BLAST of CmoCh05G002640 vs. NCBI nr
Match: KAG6598461.1 (Inositol-pentakisphosphate 2-kinase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.6 bits (418), Expect = 2.4e-37
Identity = 86/112 (76.79%), Postives = 86/112 (76.79%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLV
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK--------------------------GFLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 113
           SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAER
Sbjct: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAER 86

[Close]
BLAST of CmoCh05G002640 vs. NCBI nr
Match: XP_004146017.2 (probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus] >XP_008463776.1 PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo] >XP_008463777.1 PREDICTED: probable small nuclear ribonucleoprotein F [Cucumis melo] >XP_011654028.1 probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus] >XP_038897243.1 probable small nuclear ribonucleoprotein F [Benincasa hispida] >TYK27869.1 putative small nuclear ribonucleoprotein F [Cucumis melo var. makuwa] >KAE8649817.1 hypothetical protein Csa_012166 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-36
Identity = 86/113 (76.11%), Postives = 86/113 (76.11%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLV
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK--------------------------GFLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 114
           SVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Sbjct: 61  SVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 87

[Close]
BLAST of CmoCh05G002640 vs. NCBI nr
Match: XP_022144158.1 (probable small nuclear ribonucleoprotein F [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-35
Identity = 84/113 (74.34%), Postives = 85/113 (75.22%), Query Frame = 0 

Query: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLV 60
           MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLV
Sbjct: 1   MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK--------------------------GFLV 60

Query: 61  SVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 114
           SVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEEIED ER+
Sbjct: 61  SVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDVERE 87

[Close]
BLAST of CmoCh05G002640 vs. TAIR 10
Match: AT4G30220.1 (small nuclear ribonucleoprotein F )

HSP 1 Score: 151.4 bits (381), Expect = 4.4e-37
Identity = 76/112 (67.86%), Postives = 83/112 (74.11%), Query Frame = 0 

Query: 2   SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVS 61
           +IPVNPKPFLNNLTGKTV+VKLKWGMEYK                          GFL S
Sbjct: 3   TIPVNPKPFLNNLTGKTVIVKLKWGMEYK--------------------------GFLAS 62

Query: 62  VDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 114
           VDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++D
Sbjct: 63  VDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQD 88

[Close]
BLAST of CmoCh05G002640 vs. TAIR 10
Match: AT4G30220.2 (small nuclear ribonucleoprotein F )

HSP 1 Score: 151.4 bits (381), Expect = 4.4e-37
Identity = 76/112 (67.86%), Postives = 83/112 (74.11%), Query Frame = 0 

Query: 2   SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVS 61
           +IPVNPKPFLNNLTGKTV+VKLKWGMEYK                          GFL S
Sbjct: 11  TIPVNPKPFLNNLTGKTVIVKLKWGMEYK--------------------------GFLAS 70

Query: 62  VDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 114
           VDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++D
Sbjct: 71  VDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQD 96

[Close]
BLAST of CmoCh05G002640 vs. TAIR 10
Match: AT2G14285.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-23
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 57  GFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD 114
           GFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++D
Sbjct: 5   GFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGVPEDEELEDADQD 61

[Close]
BLAST of CmoCh05G002640 vs. TAIR 10
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 60.8 bits (146), Expect = 7.9e-10
Identity = 31/92 (33.70%), Postives = 46/92 (50.00%), Query Frame = 0 

Query: 7  PKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYM 66
          P  FL ++ GK VVVKL  G++Y+G+                          L  +D YM
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGI--------------------------LTCLDGYM 74

Query: 67 NLQLANTEEYIDGQCTGSLGEILIRCNNVLYL 99
          N+ +  TEEY++GQ   + G+  +R NNVLY+
Sbjct: 75 NIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYI 80

[Close]
BLAST of CmoCh05G002640 vs. TAIR 10
Match: AT2G43810.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 60.8 bits (146), Expect = 7.9e-10
Identity = 31/92 (33.70%), Postives = 46/92 (50.00%), Query Frame = 0 

Query: 7  PKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYM 66
          P  FL ++ GK VVVKL  G++Y+G+                          L  +D YM
Sbjct: 15 PADFLKSIRGKPVVVKLNSGVDYRGI--------------------------LTCLDGYM 74

Query: 67 NLQLANTEEYIDGQCTGSLGEILIRCNNVLYL 99
          N+ +  TEEY++GQ   + G+  +R NNVLY+
Sbjct: 75 NIAMEQTEEYVNGQLKNTYGDAFVRGNNVLYI 80

The following BLAST results are available for this feature:
BLAST of CmoCh05G002640 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SUM26.2e-3667.86Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana OX=3702 GN=At... [more]
Q3T0Z85.7e-2960.38Small nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=SNRPF PE=3 SV=2[more]
P623065.7e-2960.38Small nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=SNRPF PE=1 SV=1[more]
P623075.7e-2960.38Small nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Snrpf PE=1 SV=1[more]
P623215.7e-2960.38Small nuclear ribonucleoprotein F OS=Xenopus laevis OX=8355 GN=snrpf PE=3 SV=1[more]
BLAST of CmoCh05G002640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KQT23.1e-3876.99Sm protein F OS=Cucurbita maxima OX=3661 GN=LOC111496373 PE=3 SV=1[more]
A0A6J1HD263.1e-3876.99Sm protein F OS=Cucurbita moschata OX=3662 GN=LOC111462396 PE=3 SV=1[more]
A0A6J1GJI45.3e-3876.11Sm protein F OS=Cucurbita moschata OX=3662 GN=LOC111454427 PE=3 SV=1[more]
A0A1S3CKH55.9e-3776.11Sm protein F OS=Cucumis melo OX=3656 GN=LOC103501840 PE=3 SV=1[more]
A0A5D3DWN85.9e-3776.11Sm protein F OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00490 P... [more]
BLAST of CmoCh05G002640 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961705.16.4e-3876.99probable small nuclear ribonucleoprotein F [Cucurbita moschata] >XP_022996693.1 ... [more]
XP_022951684.11.1e-3776.11probable small nuclear ribonucleoprotein F [Cucurbita moschata] >XP_023538350.1 ... [more]
KAG6598461.12.4e-3776.79Inositol-pentakisphosphate 2-kinase, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_004146017.21.2e-3676.11probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus] >XP_0084... [more]
XP_022144158.11.0e-3574.34probable small nuclear ribonucleoprotein F [Momordica charantia][more]
BLAST of CmoCh05G002640 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G30220.14.4e-3767.86small nuclear ribonucleoprotein F [more]
AT4G30220.24.4e-3767.86small nuclear ribonucleoprotein F [more]
AT2G14285.11.3e-2385.96Small nuclear ribonucleoprotein family protein [more]
AT2G43810.17.9e-1033.70Small nuclear ribonucleoprotein family protein [more]
AT2G43810.27.9e-1033.70Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..100
e-value: 7.2E-12
score: 55.4
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 55..98
e-value: 3.5E-13
score: 49.0
NoneNo IPR availablePIRSFPIRSF006609snRNP_SmFcoord: 48..109
e-value: 9.0E-22
score: 74.7
coord: 1..39
e-value: 2.1E-11
score: 41.5
NoneNo IPR availableGENE3D2.30.30.100coord: 1..103
e-value: 3.9E-32
score: 111.8
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Fcoord: 2..35
coord: 56..109
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 56..109
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 2..35
IPR034100Small nuclear ribonucleoprotein FCDDcd01722Sm_Fcoord: 6..100
e-value: 4.64907E-44
score: 135.803
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 6..35
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 54..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G002640.1CmoCh05G002640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding