CmoCh05G001130 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G001130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Arabinogalactan peptide
Location	Cmo_Chr05: 470702 .. 472204 (-)
RNA-Seq Expression	CmoCh05G001130
Synteny	CmoCh05G001130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGTCGGGAAGGAGATTCCGGTGAAGAATCCAAAACCGGAGAAGAAATCGGCGGTGGAGTGTAAGGGAGCTCCGATCGACGGTTCCTATCATTCTCACTTGTACTGGCGATGAGGATGGCGATTCCATCAATTGTGTTTCCTTTTACTTATTGATTGATAAGTTAATTTAATTAGTTAAATAATATATCATCTGAAAGGGAAAAAAAAAAAAATCAGAAAAAAAATCTGTAATGTAAGGTTGATTCCTAGACAGGAAGGAAGTTTCTGGAACGATATTCAAAAACCACACAAATCAACTAGCCAATCACTCTCGCCTGTCATTTCTTAACCACACAGCTGTCTCTCTATATCCTGGGCCCCACAATTCCTAACTATATTTGTCCATTATTGACCTTCACAGTTCACAGCCTTCGTTTTGTGGGCCCCACCCATCATTTTCCTTTTTTTTTTATTTTTTTTATTAACACATTTTCGCTGTTTCAGTGGCTTTCCGTTTTTTTTTTCCTCATTAATTTCGTCTTTTTCGCCTTTTGGCGTATCTTCACGCTCCAATCCACGCCGTCCGATTGTTTTGTATATACCACGCGCCATCAATTTTGAACCCCCATGCCGAAGAATCTTCCACTTTTGCAACGGACCGGAGAATGTTAGAATGAAACGACACCGTTGTTTAATTTGAAAGAGTGAAATTTTAAATCCTATTATTCGTATATTAATTAAATTTTAGGTTAAGATTAAACTAAATAACCACTATTTTTAATTACAACTTTAAAATGTTTCAATTTTTTTATATATTTACCATTTTTAGTATAACTATTTTAAGATGGCTATTAATTCTAATAAAAATAATAAATAATTTGCTCCAATTGTGGAACTTCAAACTGGAATAAACCATAAATAGAATAAATCTCAAAAGTTTAACCCAAAAAGAAAAAAAAAAAAGAAATTTAAAACAAAAAATTACTTTTTATTTAAACGTTGTGCGGTGGAAAGACGCATATATTCCCGTTGATGATTTGAGGGAAATAGGGGACCACGCCAAAATATTAGCTGGCATTCAACCAATCGCCAGCTTGCTTGCCCCCTGCCCGAATACCTGCCCGACTTTCTCTCGCTCCTATTTTTCGCTCTCTTTCTCTCTATATATATCTCCTTCCACTATTTTCATTTCTCAATTGCAATTCAAAGCTAAGGGTCTTCTCTCAATCTCTTTCGATCCCTCTCGTCGTCTCCTTCCTCTCGCCGGAACCACCCTAACAGGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAGCTTCTCTCGTTGCTCTCATTGCCATCGTCTTCGCCGTCGCCTCCGTTGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACCTCCATTGCTCCGTCGTTCGTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

mRNA sequence

ATGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGTCGGGAAGGAGATTCCGGTGAAGAATCCAAAACCGGAGAAGAAATCGGCGGTGGAGTGTAAGGGAGCTCCGATCGACGGGTCTTCTCTCAATCTCTTTCGATCCCTCTCGTCGTCTCCTTCCTCTCGCCGGAACCACCCTAACAGGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAGCTTCTCTCGTTGCTCTCATTGCCATCGTCTTCGCCGTCGCCTCCGTTGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACCTCCATTGCTCCGTCGTTCGTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

Coding sequence (CDS)

ATGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGTCGGGAAGGAGATTCCGGTGAAGAATCCAAAACCGGAGAAGAAATCGGCGGTGGAGTGTAAGGGAGCTCCGATCGACGGGTCTTCTCTCAATCTCTTTCGATCCCTCTCGTCGTCTCCTTCCTCTCGCCGGAACCACCCTAACAGGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAGCTTCTCTCGTTGCTCTCATTGCCATCGTCTTCGCCGTCGCCTCCGTTGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACCTCCATTGCTCCGTCGTTCGTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

Protein sequence

MFRCCFSSSQVSAVGKEIPVKNPKPEKKSAVECKGAPIDGSSLNLFRSLSSSPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI

Homology

[Close]

BLAST of CmoCh05G001130 vs. ExPASy Swiss-Prot
Match: Q9LYF6 (Arabinogalactan protein 15 OS=Arabidopsis thaliana OX=3702 GN=AGP15 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 71  VSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI 130
           +S+AS+V L+ ++ +V + A +EAPAPSP S +++I+ SFVSA VAA  AL FGS LRI
Sbjct: 3   ISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

[Close]

BLAST of CmoCh05G001130 vs. ExPASy TrEMBL
Match: A0A0A0LKU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-12
Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 52  SPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFV 111
           SP+S        +   MA +S+ SL+ALIA++FA++SVAA EAPAPSPASPATSIAPS V
Sbjct: 51  SPASTLTPRPHYLFYPMAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAV 110

Query: 112 SACVAAFVALAFGSTLRI 130
           SAC+AAF+ALAFGSTLRI
Sbjct: 111 SACLAAFLALAFGSTLRI 128

[Close]

BLAST of CmoCh05G001130 vs. ExPASy TrEMBL
Match: A0A2P5DTQ4 (Arabinogalactan peptide OS=Parasponia andersonii OX=3476 GN=PanWU01x14_033560 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.1e-06
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 69  AGVSQASLVALIAIVFAVASVA----ATEAPAPSPASPATSIAPSFVSACVAAFVALAFG 128
           A  S ASL+ L+A++  V SV     A EAPAPSPASPA++I+PSF+SAC+AA VAL FG
Sbjct: 3   ASSSNASLIVLMAVIVTVLSVVGAAHAAEAPAPSPASPASAISPSFLSACLAALVALVFG 62

Query: 129 STLRI 130
           S +R+
Sbjct: 63  SAVRV 67

[Close]

BLAST of CmoCh05G001130 vs. ExPASy TrEMBL
Match: A0A2P5EL16 (Arabinogalactan peptide OS=Trema orientale OX=63057 GN=TorRG33x02_180590 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.0e-06
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 0


Query: 72  SQASLVALIAIVFAVASVA----ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTL 130
           S ASL+ L+A++  V SV     A EAPAPSPASPA++I+PSF+SAC+AA VAL FGS +
Sbjct: 6   SNASLIVLMAVIVTVLSVVGAAHAAEAPAPSPASPASAISPSFLSACLAALVALVFGSAV 65

[Close]

BLAST of CmoCh05G001130 vs. ExPASy TrEMBL
Match: Q96504 (CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-05
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 68  MAGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFG 127
           MA VS+ S +AL+A++FAV SVA   + E+PAP PASPA S+ PS   ACV AF+AL FG
Sbjct: 1   MAAVSKVSFMALVAVLFAVLSVAVAQSAESPAPPPASPANSVVPSLSFACVGAFLALLFG 60

Query: 128 STLR 129
           S L+
Sbjct: 61  SALK 64

[Close]

BLAST of CmoCh05G001130 vs. ExPASy TrEMBL
Match: A0A2Z6NC77 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_06290 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-05
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 76  LVALIAIVFAVASVA-ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI 130
           L+A +A++F+V S+A A +APAPSPASPATS++PSFV+  VAA  ALAFGS LRI
Sbjct: 8   LLATMAVIFSVISIASAADAPAPSPASPATSVSPSFVAGLVAAVAALAFGSNLRI 62

[Close]

BLAST of CmoCh05G001130 vs. NCBI nr
Match: KAG6598305.1 (hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.2 bits (583), Expect = 2.1e-56
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MFRCCFSSSQVSAVGKEIPVKNPKPEKKSAVECKGAPIDGSSLNLFRSLSSSPSSRRNHP 60
           MFRCCFSSSQVSAVGKEIPVKNPKPEKKSA ECKGAPIDGSSLNLFRSLSSSPSSRRNHP
Sbjct: 1   MFRCCFSSSQVSAVGKEIPVKNPKPEKKSAAECKGAPIDGSSLNLFRSLSSSPSSRRNHP 60

Query: 61  NRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVA 120
           NRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVA
Sbjct: 61  NRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVA 120

Query: 121 LAFGSTLRI 130
           LAFGSTLRI
Sbjct: 121 LAFGSTLRI 129

[Close]

BLAST of CmoCh05G001130 vs. NCBI nr
Match: KGN62403.1 (hypothetical protein Csa_018595 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-12
Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 52  SPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFV 111
           SP+S        +   MA +S+ SL+ALIA++FA++SVAA EAPAPSPASPATSIAPS V
Sbjct: 51  SPASTLTPRPHYLFYPMAALSKVSLLALIALIFALSSVAAQEAPAPSPASPATSIAPSAV 110

Query: 112 SACVAAFVALAFGSTLRI 130
           SAC+AAF+ALAFGSTLRI
Sbjct: 111 SACLAAFLALAFGSTLRI 128

[Close]

BLAST of CmoCh05G001130 vs. NCBI nr
Match: KAG6585732.1 (CXXC motif containing zinc binding protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 75  SLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI 130
           SL+ALIA++ AVASVAA EAPAPSPASPA+SIAPSFVSAC A FVAL  GSTLRI
Sbjct: 212 SLMALIALIIAVASVAAQEAPAPSPASPASSIAPSFVSACTAFFVALVLGSTLRI 266

[Close]

BLAST of CmoCh05G001130 vs. NCBI nr
Match: KAG7024335.1 (hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-06
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 63  QISESMAGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFV 122
           +I  +MA VS+ S +AL+A++F V SVA   + E+PAP+PASPATS+ PS   ACV AFV
Sbjct: 19  EIFRAMAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFV 78

Query: 123 ALAFGSTLR 129
           AL FGS L+
Sbjct: 79  ALVFGSALK 87

[Close]

BLAST of CmoCh05G001130 vs. NCBI nr
Match: KAG6591454.1 (hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-06
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 63  QISESMAGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFV 122
           +I  +MA VS+ S +AL+A++F V SVA   + E+PAP+PASPATS+ PS   ACV AFV
Sbjct: 23  EIFRAMAAVSKTSFMALVAVLFTVVSVAVAQSAESPAPAPASPATSVVPSLSVACVGAFV 82

Query: 123 ALAFGSTLR 129
           AL FGS L+
Sbjct: 83  ALVFGSALK 91

[Close]

BLAST of CmoCh05G001130 vs. TAIR 10
Match: AT5G11740.1 (arabinogalactan protein 15 )

HSP 1 Score: 50.8 bits (120), Expect = 9.3e-07
Identity = 32/59 (54.24%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 71  VSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI 130
           +S+AS+V L+ ++ +V + A +EAPAPSP S +++I+ SFVSA VAA  AL FGS LRI
Sbjct: 3   ISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

The following BLAST results are available for this feature:

BLAST of CmoCh05G001130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYF6	1.3e-05	54.24	Arabinogalactan protein 15 OS=Arabidopsis thaliana OX=3702 GN=AGP15 PE=1 SV=1	[more]

BLAST of CmoCh05G001130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKU1	2.0e-12	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G351840 PE=4 SV=1	[more]
A0A2P5DTQ4	6.1e-06	58.46	Arabinogalactan peptide OS=Parasponia andersonii OX=3476 GN=PanWU01x14_033560 PE...	[more]
A0A2P5EL16	8.0e-06	59.68	Arabinogalactan peptide OS=Trema orientale OX=63057 GN=TorRG33x02_180590 PE=4 SV...	[more]
Q96504	2.3e-05	57.81	CRG16 OS=Cucumis sativus OX=3659 GN=Csa_4G645890 PE=2 SV=1	[more]
A0A2Z6NC77	2.3e-05	65.45	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_06290 PE=4 SV=...	[more]

BLAST of CmoCh05G001130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598305.1	2.1e-56	99.22	hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN62403.1	4.1e-12	66.67	hypothetical protein Csa_018595 [Cucumis sativus]	[more]
KAG6585732.1	1.1e-09	81.82	CXXC motif containing zinc binding protein, partial [Cucurbita argyrosperma subs...	[more]
KAG7024335.1	1.9e-06	56.52	hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591454.1	1.9e-06	56.52	hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh05G001130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11740.1	9.3e-07	54.24	arabinogalactan protein 15	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G001130.1	CmoCh05G001130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane