CmoCh05G000110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G000110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Nucleic acid-binding, OB-fold-like protein
Location	Cmo_Chr05: 43784 .. 47420 (-)
RNA-Seq Expression	CmoCh05G000110
Synteny	CmoCh05G000110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATACCAACTTTATTTCTTTCCTCCAAGCCAGACTTTGACGGCTACGTTTCTGAAATCAGATCGGCTTCCTTTTTCTCCCTTCGTCTTTGCCTCTACCGCCCGTAAAAGGTGATTTCTAAACCCTAAAATTTCAGTTCCAGTTATTCTTGTACCTATCCTTCTTACATTTTATATTTCTCTTTGCTTCTGAACTTTTTTGGCATTCAGGTTGTGATTTTGTGGTACTTGTTCGGTTTGCATGGTCTTTTTATGATTCCTATTTATGACATTCAAGTCTGAAATTTTATATATAAAATGCGATGAGAAATACTTGCAGAACATTAAGTTTGTTGATTTATAACTAATTTTCGTTTTTCATTGAGGCATTAAGCATGCTTCGAAACATTATTTGAGCACGCGCCATTTCTTCAAGTTCCACATTGGGCCTCCTGTAATTTGATACACCTTCATTTGATTCACGAAATTTTTCGGGACACAAAAGTTATGAAAAACTGTGTATCCGTGGTTTTAATTATTAGCGTTTGAGTTTAAGCGATTAATAGCTTTTAAATGCTCAGAAGCGATTAATGGTGTTGTCATTGGAGTGCATGTTTACGGACGATTAGTTGGTGGGATGAAAATTTAGATGTTTGGAAGTGAACGGAGAAAATGAGATTGGCGGTAAATTAAGAACAAGAACAAACGACATGTTATTTGAGAAAGCTATGCCCTAAATCTTTTGGTTGGGTGTAAGAACAGTAATGCTCTGGTTAGAAAGATAAATGTTTCTCTAGTCACCTTGGTTCATTTTATTATAAACTTCCATATTATCTTTAATTTTTCAGATACAGAGGTAGAAGCTTGAATAATCAAGCAGCCATTAAAATCGTGTCAAAACTTGATGCCAATTGCCAACAATTTAACATTTTTTCTTTAACCACTGTAGGTTGACCTACTAGTCAAATGTAAGCTTAGAGGGAAAGTGTGCATAGCCACCTGCATAAGACTTACGGTCCTACAGTGTCTTTGAAAACCAAATGCAATAGAGTAAGACAATTGTCTCAAGATTAGTCGAAATGATGGGAGATTTTCAAATATTTAAAATATTAATAAGAAAAATAATTTTCCACTTTGCTTTTCGATCTTATCCTGTTTCTTTGAAGGGATAATTTTAATTATTTCACCCATTTTTTGTCATGGATATTTAATCAATCCGAGGCTTTCATCTACCTTGTTGATATGCTAGCACTCTGGGCCTTTTTTTATTCACTACATTTTATTGTCTAACTGTTTTCTTATTGTTTATATATTGGTATGAATAGGCATTTGTATTCGCGGAAATGGCAGAATCAAAACCTGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCGGGCACTAGTGGCCATACTCTTATAGTCAAGGTTGTGAATGCTAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATTTTTACTGCCAGAAACGATCAAGGTAAATTTCAACGATATGTGAGCATGCATCATTTGTGTACTTGTATCTTGTATGAAGCATGCCAACTTTCTTATTTGTGCTTTCATTCTGTACATATTACTAAACATTGGACGTTAATTGGTTCTTGATATCCACATGCAACAGAAAAGATGCAGGTAAGAGTTTTCATAACTGATTTATATGGGTGTCTCACTCGTCCACAATGTATTTACACATTTCAATGTGAAAGGTATAGGTTGTTTTGATATATCAACTTCCTATTATTAAAGATTTCATAAATGTTTGTGGCTTTATGTTGTCTTAAAATTAACGAGGAACCTTTTTCACATACAAGGAACTATATTTTTACTAAATGCCGGTACATACAGAGGTTGAAATAAAACAGCAATTGAAATAAATCATCCACACAAAATTGCCTTTTAAAGAACTATAACTTCATACTTTTTCGGTTATATATATGGTGTAATGTCTAATAGTTGGATAATCACTTCAATAGCTCAATTGCATGTCGGATGTTGGATTAATGTAAAGTCCATACATTTGTAAGGATAAGCTCTTTGCCGAATCTTAAGAATAATAGATTTCGAAGGAACCTTCTGTTTTTTTTTTTTTTCTTTTCTTTTTAATGATTTTATGAGGGAAATTAGTGCTATAAGGTCCACAAATGTTTGTTAATGGTGTTCCTTCCACAGCTTCTTTCATCTCTTGATTGCATTTGCACATTTTTTATATTTTGATCTGATTATGCATGCCAGTGAGTGGTCACCGTTCACAGTACTGTATGTTAATTGTATTTTTTAATCACATATGGATGCTTTAGTGATCAAATGGATCTTAGGCTATTTTATTGTACGAGGGAGTAAGAAAATGAGCTGCTGTATTTGTTGTTTTTTTCACTCCTGAAAAAGAAAAGATAGAAGTGGTGAATCATTGAATGGAAAACTGGTTAATAACACCATAACTTTGTAGTTCTATTGTTGCAAAGAAAACTATTCCTCCTCCTGCATTGGCAGATGAAAGAGGTGGACAAGAATGGTATTTTATGCAAGGTAGGTTCATGGTTTGACAGAGGGGAACAGGTGGTGCAGGAATGGGATAGTTTTATGTTGTAGATGAAATTTTTCTTCGGTCGAACTCTTGTTGTTAAAATATATGCCTGTGATTTGACTCAGCCTATCTTTGTGTAGCTTACCTTTGTTCATGAGATTAGTAAATAACGTCATCTAGGATTCCCTTTAAGCAGTCGGGACAATTTTGTAAGTTATGTACCTTGTGATTTTAATTCCAACTGACCCCTATCGTGTTAGTTAGCCAATCCTTAGAGAAGATTTTATATTAATATTGAATCTGCCCTCGTAGCCACAGTTCTATTTGCTTATTTGAATGAGTATTTCTTTTGGCGGACATATTTAAATGGCATTAAAGTTTCCGTAGCTCATTTACTCGCATGTTGTTGCTTTCTTCCGTGTAGTGGACTTGATGAAAGAAGGTGCTACTATTACCCTGCGCAATGCTAAGATTGACATGTTTAAAGGATCAATGAGACTTGCCGTGGACAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCTGCGTTTACTGTTAAGGAAGATAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTTGTGGAAGAGTGAATTTTGTGATCGTGTTCATTTTCCTGCTGCAACATGACCATAAAATAAAACAATCAAGCTACAAACTCACGAGTTTCCGTTGGGGTGTCGAAAATGCTCGCACAAGTTCATTATTAGGGAATAGAATTATGGAAGCCAGTACGAAAGTTGATTTCCATCCCTGCAGCCAATTGGTGGAACCGTTGGGATCTACAAACAGGTGGGTGATGGCTCAGTTGATGGAAGAAGGCTTGGCTGGCTTTTCTATTTTTCGTTTGTCTAGTATTTTATTGCTTATGAAAACACTTTACGATATCGTGAACTATCATCAGATGACAAGACTAGCACCTTGTTCCGTTAAAGCTTATGTTAATTCAAGGTCGATGCCAACTTGACTGCCTTCGAGTGTCAAATCTTATTCTTAAATGATTGATTACTCCCAAAAAGTGAGGA

mRNA sequence

CATACCAACTTTATTTCTTTCCTCCAAGCCAGACTTTGACGGCTACGTTTCTGAAATCAGATCGGCTTCCTTTTTCTCCCTTCGTCTTTGCCTCTACCGCCCGTAAAAGGTTGACCTACTAGTCAAATGTAAGCTTAGAGGGAAAGTGTGCATAGCCACCTGCATAAGACTTACGGTCCTACAGTGTCTTTGAAAACCAAATGCAATAGAGCATTTGTATTCGCGGAAATGGCAGAATCAAAACCTGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCGGGCACTAGTGGCCATACTCTTATAGTCAAGGTTGTGAATGCTAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATTTTTACTGCCAGAAACGATCAAGAAAAGATGCAGGTAAGAGTTTTCATAACTGATTTATATGGGTGTCTCACTCGTCCACAATGTATTTACACATTTCAATGTGAAAGTTCTATTGTTGCAAAGAAAACTATTCCTCCTCCTGCATTGGCAGATGAAAGAGGTGGACAAGAATGGTATTTTATGCAAGTGGACTTGATGAAAGAAGGTGCTACTATTACCCTGCGCAATGCTAAGATTGACATGTTTAAAGGATCAATGAGACTTGCCGTGGACAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCTGCGTTTACTGTTAAGGAAGATAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTTGTGGAAGAGTGAATTTTGTGATCGTGTTCATTTTCCTGCTGCAACATGACCATAAAATAAAACAATCAAGCTACAAACTCACGAGTTTCCGTTGGGGTGTCGAAAATGCTCGCACAAGTTCATTATTAGGGAATAGAATTATGGAAGCCAGTACGAAAGTTGATTTCCATCCCTGCAGCCAATTGGTGGAACCGTTGGGATCTACAAACAGGTGGGTGATGGCTCAGTTGATGGAAGAAGGCTTGGCTGGCTTTTCTATTTTTCGTTTGTCTAGTATTTTATTGCTTATGAAAACACTTTACGATATCGTGAACTATCATCAGATGACAAGACTAGCACCTTGTTCCGTTAAAGCTTATGTTAATTCAAGGTCGATGCCAACTTGACTGCCTTCGAGTGTCAAATCTTATTCTTAAATGATTGATTACTCCCAAAAAGTGAGGA

Coding sequence (CDS)

ATGGCAGAATCAAAACCTGGACTAAGGAAACCAGTATTTACCAAGGTTGACCAACTTCGGCCGGGCACTAGTGGCCATACTCTTATAGTCAAGGTTGTGAATGCTAAGATGGTATTGCAGAAGGGTCGTCCTGATGGTCCTCAAGCCCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGATCATTTTTACTGCCAGAAACGATCAAGAAAAGATGCAGGTAAGAGTTTTCATAACTGATTTATATGGGTGTCTCACTCGTCCACAATGTATTTACACATTTCAATGTGAAAGTTCTATTGTTGCAAAGAAAACTATTCCTCCTCCTGCATTGGCAGATGAAAGAGGTGGACAAGAATGGTATTTTATGCAAGTGGACTTGATGAAAGAAGGTGCTACTATTACCCTGCGCAATGCTAAGATTGACATGTTTAAAGGATCAATGAGACTTGCCGTGGACAGGTGGGGCCGAGTTGAAGTTACTGAGCCTGCTGCGTTTACTGTTAAGGAAGATAACAATCTTTCACTCATTGAATATGAACTCGTGAATGTTGTGGAAGAGTGA

Protein sequence

MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVGDETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADERGGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLSLIEYELVNVVEE

Homology

[Close]

BLAST of CmoCh05G000110 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 9.6e-37
Identity = 88/187 (47.06%), Postives = 107/187 (57.22%), Query Frame = 0


Query: 9   RKPVFTKVDQLRPGTSGHTLIVKVVNAKMVL---QKGRPDGPQAR---QMRIAECLVGDE 68
           RKPVF KV+QL+PGT+GHTL VKV+ A +V+   +K RP    +R     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 69  TGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADERGG 128
           TG I+FTARND                                                 
Sbjct: 78  TGCILFTARND------------------------------------------------- 137

Query: 129 QEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLSLI 188
                 QVDLMK GAT+ LRN++IDMFKG+MRL VD+WGR+E T  A+FTVKEDNNLSL+
Sbjct: 138 ------QVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLV 149

Query: 189 EYELVNV 190
           EYEL+NV
Sbjct: 198 EYELINV 149

[Close]

BLAST of CmoCh05G000110 vs. ExPASy TrEMBL
Match: A0A6J1HBA7 (uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC111462446 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.4e-62
Identity = 137/192 (71.35%), Postives = 137/192 (71.35%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
           DETGMIIFTARND                                               
Sbjct: 61  DETGMIIFTARND----------------------------------------------- 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
                   QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS
Sbjct: 121 --------QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 137

Query: 181 LIEYELVNVVEE 193
           LIEYELVNVVEE
Sbjct: 181 LIEYELVNVVEE 137

[Close]

BLAST of CmoCh05G000110 vs. ExPASy TrEMBL
Match: A0A6J1KB77 (uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC111491763 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 5.2e-62
Identity = 136/192 (70.83%), Postives = 137/192 (71.35%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
           DETGMIIFTARND                                               
Sbjct: 61  DETGMIIFTARND----------------------------------------------- 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
                   QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS
Sbjct: 121 --------QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 137

Query: 181 LIEYELVNVVEE 193
           LIEYELVNV+EE
Sbjct: 181 LIEYELVNVMEE 137

[Close]

BLAST of CmoCh05G000110 vs. ExPASy TrEMBL
Match: A0A445LY46 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_000306 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 9.0e-62
Identity = 138/211 (65.40%), Postives = 156/211 (73.93%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTL VKVV+AKMV+QKGR DGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVDAKMVMQKGRSDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQ-----EKMQVRVFITDLYGCLTRPQCIYTF------------QCES 120
           DETGMIIFTARNDQ       +    F   +Y  L  P  I +F            Q E+
Sbjct: 61  DETGMIIFTARNDQGMGLESHIGSMGFQYGIYKALGSPTTIVSFCGYENMQLASFDQAEA 120

Query: 121 SIVA--KKTIPPPALADERGGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWG 180
           S V+  K+T+      D +      F ++D+MKEGAT+TLRNAKIDMFKGSMRLA D+WG
Sbjct: 121 SEVSNQKRTL----FTDVK------FRKMDMMKEGATVTLRNAKIDMFKGSMRLAADKWG 180

Query: 181 RVEVTEPAAFTVKEDNNLSLIEYELVNVVEE 193
           RVEVTEPA+FTVKEDNNLSLIEYELVNVV E
Sbjct: 181 RVEVTEPASFTVKEDNNLSLIEYELVNVVVE 201

[Close]

BLAST of CmoCh05G000110 vs. ExPASy TrEMBL
Match: A0A1S3BA24 (uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487687 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.3e-60
Identity = 134/192 (69.79%), Postives = 134/192 (69.79%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
           DETGMIIFTARND                                               
Sbjct: 61  DETGMIIFTARND----------------------------------------------- 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
                   QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPA FTVKEDNNLS
Sbjct: 121 --------QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDNNLS 137

Query: 181 LIEYELVNVVEE 193
           LIEYELVNVVEE
Sbjct: 181 LIEYELVNVVEE 137

[Close]

BLAST of CmoCh05G000110 vs. ExPASy TrEMBL
Match: A0A5A7V0K6 (Nucleic acid-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002290 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.3e-60
Identity = 134/192 (69.79%), Postives = 134/192 (69.79%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
           DETGMIIFTARND                                               
Sbjct: 61  DETGMIIFTARND----------------------------------------------- 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
                   QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPA FTVKEDNNLS
Sbjct: 121 --------QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPANFTVKEDNNLS 137

Query: 181 LIEYELVNVVEE 193
           LIEYELVNVVEE
Sbjct: 181 LIEYELVNVVEE 137

[Close]

BLAST of CmoCh05G000110 vs. NCBI nr
Match: XP_022961781.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023545751.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.4 bits (633), Expect = 4.9e-62
Identity = 137/192 (71.35%), Postives = 137/192 (71.35%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
           DETGMIIFTARND                                               
Sbjct: 61  DETGMIIFTARND----------------------------------------------- 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
                   QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS
Sbjct: 121 --------QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 137

Query: 181 LIEYELVNVVEE 193
           LIEYELVNVVEE
Sbjct: 181 LIEYELVNVVEE 137

[Close]

BLAST of CmoCh05G000110 vs. NCBI nr
Match: KAG5059271.1 (hypothetical protein JHK87_000300 [Glycine soja])

HSP 1 Score: 248.1 bits (632), Expect = 6.4e-62
Identity = 133/192 (69.27%), Postives = 149/192 (77.60%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTL VKVV+AKMV+QKGR DGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVDAKMVMQKGRSDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
           DETGMIIFTARNDQ        +      ++ P CI     E S   K+T+      D +
Sbjct: 61  DETGMIIFTARNDQGIYVTAFTMFPSAPIISFPHCIMAEASEVS-NQKRTL----FTDVK 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
                 F ++D+MKEGAT+TLRNAKIDMFKGSMRLA D+WGRVEVTEPA+FTVKEDNNLS
Sbjct: 121 ------FRKMDMMKEGATVTLRNAKIDMFKGSMRLAADKWGRVEVTEPASFTVKEDNNLS 180

Query: 181 LIEYELVNVVEE 193
           LIEYELVNVV E
Sbjct: 181 LIEYELVNVVVE 181

[Close]

BLAST of CmoCh05G000110 vs. NCBI nr
Match: XP_022996548.1 (uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_022996550.1 uncharacterized protein At4g28440-like [Cucurbita maxima])

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-61
Identity = 136/192 (70.83%), Postives = 137/192 (71.35%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
           DETGMIIFTARND                                               
Sbjct: 61  DETGMIIFTARND----------------------------------------------- 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
                   QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS
Sbjct: 121 --------QVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 137

Query: 181 LIEYELVNVVEE 193
           LIEYELVNV+EE
Sbjct: 181 LIEYELVNVMEE 137

[Close]

BLAST of CmoCh05G000110 vs. NCBI nr
Match: KAG7029193.1 (hypothetical protein SDJN02_07530 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.9 bits (629), Expect = 1.4e-61
Identity = 136/192 (70.83%), Postives = 136/192 (70.83%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADER 120
           DETGMIIFTARND                                               
Sbjct: 61  DETGMIIFTARND----------------------------------------------- 120

Query: 121 GGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 180
                   QVDLMKEG TITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS
Sbjct: 121 --------QVDLMKEGVTITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLS 137

Query: 181 LIEYELVNVVEE 193
           LIEYELVNVVEE
Sbjct: 181 LIEYELVNVVEE 137

[Close]

BLAST of CmoCh05G000110 vs. NCBI nr
Match: RZC28242.1 (hypothetical protein D0Y65_000306 [Glycine soja] >RZC28243.1 hypothetical protein D0Y65_000306 [Glycine soja])

HSP 1 Score: 246.5 bits (628), Expect = 1.8e-61
Identity = 138/211 (65.40%), Postives = 156/211 (73.93%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60
           MA+SKPGLRKPVFTKVDQLRPGTSGHTL VKVV+AKMV+QKGR DGPQ+RQMRIAECLVG
Sbjct: 1   MADSKPGLRKPVFTKVDQLRPGTSGHTLTVKVVDAKMVMQKGRSDGPQSRQMRIAECLVG 60

Query: 61  DETGMIIFTARNDQ-----EKMQVRVFITDLYGCLTRPQCIYTF------------QCES 120
           DETGMIIFTARNDQ       +    F   +Y  L  P  I +F            Q E+
Sbjct: 61  DETGMIIFTARNDQGMGLESHIGSMGFQYGIYKALGSPTTIVSFCGYENMQLASFDQAEA 120

Query: 121 SIVA--KKTIPPPALADERGGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWG 180
           S V+  K+T+      D +      F ++D+MKEGAT+TLRNAKIDMFKGSMRLA D+WG
Sbjct: 121 SEVSNQKRTL----FTDVK------FRKMDMMKEGATVTLRNAKIDMFKGSMRLAADKWG 180

Query: 181 RVEVTEPAAFTVKEDNNLSLIEYELVNVVEE 193
           RVEVTEPA+FTVKEDNNLSLIEYELVNVV E
Sbjct: 181 RVEVTEPASFTVKEDNNLSLIEYELVNVVVE 201

[Close]

BLAST of CmoCh05G000110 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-53
Identity = 112/192 (58.33%), Postives = 128/192 (66.67%), Query Frame = 0


Query: 1   MAES-KPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLV 60
           MA+S K GL+KP FTKVDQLRPGTSGH + VK+V+ KMVLQKGR DGPQARQ+RI+EC+V
Sbjct: 1   MADSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIV 60

Query: 61  GDETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADE 120
           GDETG+I+FTARND                                              
Sbjct: 61  GDETGVIVFTARND---------------------------------------------- 120

Query: 121 RGGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNL 180
                    QVDLMKEG+T+TLRNAKIDM+KGSMRLAVD+WGRVEVTEPA+F VKED N+
Sbjct: 121 ---------QVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDTNM 137

Query: 181 SLIEYELVNVVE 192
           SLIEYELVNVVE
Sbjct: 181 SLIEYELVNVVE 137

[Close]

BLAST of CmoCh05G000110 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-48
Identity = 108/192 (56.25%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQK--GRPDGPQARQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L VKVVN KMV+Q+  GRP GPQ+RQMRIAECL
Sbjct: 1   MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 60

Query: 61  VGDETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALAD 120
           VGDETG+IIFTARND                                             
Sbjct: 61  VGDETGIIIFTARND--------------------------------------------- 120

Query: 121 ERGGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVT-EPAAFTVKEDN 180
                     QVD+MKEG+ +TLRNAKIDM+KGSMRLAVDRWGRVEV  EP   TVK+DN
Sbjct: 121 ----------QVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDN 137

Query: 181 NLSLIEYELVNV 190
           NLSLIEYELV+V
Sbjct: 181 NLSLIEYELVSV 137

[Close]

BLAST of CmoCh05G000110 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-48
Identity = 108/192 (56.25%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQK--GRPDGPQARQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L VKVVN KMV+Q+  GRP GPQ+RQMRIAECL
Sbjct: 15  MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 74

Query: 61  VGDETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALAD 120
           VGDETG+IIFTARND                                             
Sbjct: 75  VGDETGIIIFTARND--------------------------------------------- 134

Query: 121 ERGGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVT-EPAAFTVKEDN 180
                     QVD+MKEG+ +TLRNAKIDM+KGSMRLAVDRWGRVEV  EP   TVK+DN
Sbjct: 135 ----------QVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDN 151

Query: 181 NLSLIEYELVNV 190
           NLSLIEYELV+V
Sbjct: 195 NLSLIEYELVSV 151

[Close]

BLAST of CmoCh05G000110 vs. TAIR 10
Match: AT1G10590.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-48
Identity = 108/192 (56.25%), Postives = 123/192 (64.06%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQK--GRPDGPQARQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L VKVVN KMV+Q+  GRP GPQ+RQMRIAECL
Sbjct: 1   MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 60

Query: 61  VGDETGMIIFTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALAD 120
           VGDETG+IIFTARND                                             
Sbjct: 61  VGDETGIIIFTARND--------------------------------------------- 120

Query: 121 ERGGQEWYFMQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVT-EPAAFTVKEDN 180
                     QVD+MKEG+ +TLRNAKIDM+KGSMRLAVDRWGRVEV  EP   TVK+DN
Sbjct: 121 ----------QVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDN 137

Query: 181 NLSLIEYELVNV 190
           NLSLIEYELV+V
Sbjct: 181 NLSLIEYELVSV 137

[Close]

BLAST of CmoCh05G000110 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 168.7 bits (426), Expect = 4.6e-42
Identity = 97/185 (52.43%), Postives = 107/185 (57.84%), Query Frame = 0


Query: 9   RKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQK-GRPDGPQARQMRIAECLVGDETGMII 68
           +KPVF KVDQL+PGTSGHTL VKVV+   V QK G       R  RI+ECLVGDET  I+
Sbjct: 53  KKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARISECLVGDETACIL 112

Query: 69  FTARNDQEKMQVRVFITDLYGCLTRPQCIYTFQCESSIVAKKTIPPPALADERGGQEWYF 128
           FTARND                                                      
Sbjct: 113 FTARND------------------------------------------------------ 172

Query: 129 MQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVEVTEPAAFTVKEDNNLSLIEYELV 188
            QV+LMK GAT+ LRNAKIDMFKGSMRLAVD+WGR+E TEPA  TVKEDNNLSL+EYELV
Sbjct: 173 -QVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNLSLVEYELV 182

Query: 189 NVVEE 193
           NVVEE
Sbjct: 233 NVVEE 182

The following BLAST results are available for this feature:

BLAST of CmoCh05G000110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	9.6e-37	47.06	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

BLAST of CmoCh05G000110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HBA7	2.4e-62	71.35	uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KB77	5.2e-62	70.83	uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC1114917...	[more]
A0A445LY46	9.0e-62	65.40	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_000306 PE=4 SV=1	[more]
A0A1S3BA24	1.3e-60	69.79	uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A5A7V0K6	1.3e-60	69.79	Nucleic acid-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of CmoCh05G000110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961781.1	4.9e-62	71.35	uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 unch...	[more]
KAG5059271.1	6.4e-62	69.27	hypothetical protein JHK87_000300 [Glycine soja]	[more]
XP_022996548.1	1.1e-61	70.83	uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_022996550.1 unchar...	[more]
KAG7029193.1	1.4e-61	70.83	hypothetical protein SDJN02_07530 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
RZC28242.1	1.8e-61	65.40	hypothetical protein D0Y65_000306 [Glycine soja] >RZC28243.1 hypothetical protei...	[more]

BLAST of CmoCh05G000110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23750.1	1.5e-53	58.33	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	1.5e-48	56.25	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	1.5e-48	56.25	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.2	1.5e-48	56.25	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G33845.1	4.6e-42	52.43	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 23..181 e-value: 1.6E-39 score: 136.2
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 3..192
None	No IPR available	PANTHER	PTHR31472:SF13	EXPRESSED PROTEIN	coord: 3..192
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 129..189
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 6..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G000110.1	CmoCh05G000110.1	mRNA