CmoCh05G000090 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G000090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
LocationCmo_Chr05: 29920 .. 36646 (-)
RNA-Seq ExpressionCmoCh05G000090
SyntenyCmoCh05G000090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCCCAAAAAGAGCGTAGATTTAAATTGAATAGCCTAATTTCGAATTAGTCAACAATTTTGAGGGCAAGCAGACGCCGCCCCAGTTTGGAACAGCCCAAGGAAACTCCATAGGCTTAGTTTTCTTCCCAGAGGTCTATCAGATCGCTCCTCTTCCAGTTCTTACTTCCAAGTTCTCGCTTCACACAGACAGCCAAACAAATATGGCGGCTTGCTCTACCTGGAAAACCCTACGAATTTCCTCCTCTTCCGCAAGAACCCTCCTTCAACGTTCCTCCTCCTCCCCCCCCTCTGCGTCTCATCTTGTGTCCAAACCTACGATGTCTGCGCCACTTCCTTCTGCAAAGCCGTCCGCATCTTCCCGCTTCTCTGTTCCGAAGCTTACCAACTTCAGGTATGTTTTTGGTTGTTTTGCTTTACTTATGGTATTCGCTCCTTTTCAATTTGGAGTTATGTTGGAAATATATAATTCAGTAATGTAATGCCGTTTTCTTCGGCTCCAAGATTTGGTATTTCTCAATTTCAATGGCCACAACCTTTTCCATTTCCTTTTTTTTTTTTAATTTTTTTTTATTTTAAAAAAACTAGTTTCTTGGATTTAATCCATGTTATCAGTTTCTATTTCCCTAAAGAGGTGATCGTTTCTCTTTTCTAAAATCTAAGTAATTGCCCGTTCTTTAAGTACATTTACTGGGTTAGCTCGTCTAAATTTACCCATCCACGATCGAATTTTTGCGATTCTATGCATTTCTATACTTACTGAAGATAATCATCATGAAGACTCCAGAGTTTTTATGCTAAATGCTGCTGCTCCTTTAGGCTTCCAGTGGAGTTGTCAAGCGTGCAGTCACTAATGCCATTGCACAGTGCTACTGCTTCTGCCTTGTTTACTTCCCTGCTTTCTTTGCATAACAACAGTTGGGGTTGTCTATCTGAAGGTAACCTTTCTACCTTACTTCCTTGCGTCAATGTTAAATTACGCTATTAGAACATGCGATAAATTTAAAGAATTGCCTTGCAATTGTGTTGACCTTTAATTTCTGAGTTTCTATATTAAATTACGCTATTAGAAGATTAATTGTTTGGTTAGAGTTAATTTAAGAACTTAGATTGTTTTTGCTAATTTTCCGTGAGTTTGAATTTTTGGATTGTTTTTGCTAATTTTCCGTGAGTTTGAATTTTTGTTTGTTAACGAGGTTCAATACATATACTGTAGATTTGAAATGCTAATTAGATGCCTGTGCAAGAATTTTTAATTCAATGTCTTCTGCCTCAGTACATCATTTTAAGTTATCACGAATTCCAGAAAACATACTAATCACAAACATTGATTTAACTCCATGAGTTGTTAAAGTTTCAAGTTTCTACTGATTCCTTAAAATATACTCATGATAAATAGTGATTTTATAACCCCATGAGTTGGCCAGTTTTCTACAATATCTAGATTGTATGGTTTTACATGTTGTATTTTCTTTCAAGTGATAATGAACACAACCATTGATATAGCAAAAATTTATGGTAAATATGCTTTACAACAAAAAGCATCCCGTGGAGGTAGGGAGAATTTGAGAGGATTAGGTTAATTCTTTCTACTATCCCTTTTGTGTATTATTACTCCCTATAGAGAGGAGTTCCCCTCATGTATTTCACATCTAGATCATAATAAAGTTTCTTGTTGATTGATTCTTGGAGATTTCTCCTCTAGTCACTCTTAGGTTACATCGGTTAGATAAAACCTGAGTTTTCTCTTATTTAGAACCTGAGTTTTCCCTTATTTAGATTCACACAATTACATTAATGATCTGTTTGACCATTTGACAAACACGTCGGAAATTTTGGTAAAGAACTCTACAATATATAGAATATATGGAATACCACAGAAACGTTTCTTTTTTTTAATTGTACATTCAATTAATTTCAATCAAATAAGTCGTATCTTGTTCAGACCGATAAATAGAGCTGAGGTTAGAGTTAAAACTGCTAGTAGAAAACCGAAATAACTAGTGAGAGTAGGCATGACGAGGCTAAATGAAATACGTTATTTTTATCCATATGTTTATAAAGCACTTCCCTAAGTTTCTATTTTTGAAAGATACGCGGATGGATCTGTTTGACCATTTGACAAACACGTCGGAAATTTTAGAAGGCAATTTGGTAGGAAATAGTGAAGGCAATTTGGTAGGAAATAGCACAGATTCCGTGGCCACTCTCCAGCCATTTTTAGAATAGGTTATATTTAAATAGTAAATCTGTTCACAATATTTTCACAACCCGAATTTGAAGGAGCAGTCAAAATTTCATCAATTCTCTCTCTTCTTATTTTAAGCATTTTATTTTCTTCCAACAACCTGTTGTCGACAATTTCCTCTCACCGAAAATAAAGGATTTCCCGGCCGATTATTGCAATCCAACAAGTGGTATCAGAGCCAGGTTGAAGCCATCGGTGTATATCATTGCGGAGGAGCCAACCTATCAACAATCAAGTTGAATAGCTCAAGTGGCTAGAGCGTCGACCTAACAACACACAGGTCTCAGGTTTTCGAGTAGAAGAAAATGCAAAGCGCAAAAATAAACACATCGTGAGGTCCATCTCGAGCAGGCTCGCTCACTCCTCCACGTCGCCAAGTGCCGGCATCTCCATCACCACCACGAAGAGGCCGTGGCCGACCGCCGTGGTTCAGTATTCGATATTGACAAGGTCCAACTATAACGAGTGGACCTTGTTGATGCGTGTCAACCTACAGGCGCAAGGGTTATGGCATGCTGTCGAGCTAGAGGAAGGAGAAACGATTGAGTACCGGGAGGATCGGCTGGCGTTCGCCGCCATATTACGATCTGTGCCCCCAGAGATGCTGGCATCTCTCTCCACCAAGCGCACCGTGCAATCGGCCTGGGAGGGAATCAAATCCCGTCGGGTTGGTGTATAGCGAGTGCGGGAATCCAACATCGAGCAGCTGCGGAAGGAGCTCTCGGAGATCCGCTTTAGCCTGGGAGGAAATCAAATCCCGTCGGGTCGGTGTATAGCGAGTGCGGGAATCCAACATCGAGCAGCTGCGGAAGGAGCTCTCGGAGATCCGCTTTAAGGACGGCGAATCCGCGTCCCCGATCACCTCGAGCAAGTCGCGATTTCAATCGAGACATTGCTTGACGTGAACGACCTAACGGTGGAAGAGGTGACCAGAAGACTGCGTAACGTCGAGCAGCGGAAGAAAAATACCATTTCAGCTGTCGACAAGGAGGGTTGTCTACTCCTCACTGAGGAGGAATGGCTTGCACGCCTAAAGCTCCGTGACGACACCGGCGAGAGCAATGGGCCCTCCAGCCGCAAAGGCGGTAAGAAGCCGTGGAAATCTCGCCGGCACATGCGCGAGAAAGAGGCGGATCAAAAGAAGGAGGAGCCGACTGATGACGGGCCAATCGAGTGCTCGTACTGTGGGAAGAGAGGTCACCTGAGCAAGAATTGCTGGAGCAAGCTCAGGAACAAGGAGACAACCGAGAAGGCCCATGTGGCTCAATTCGAGGAGGACAAGCCGGCCCTTTTCATGGTGACTGCATCAGTCCTACCTGACGTCGAACCCGAGGAAGAGCTCCCCAGATCCACAGAGGTAATCGACGACGGCATAACTGCTCCGGTGAGCGTCGAACCCGAGGAAGAGCTCCCCAAATCCACAGAGGTAATCGACGACGGCATAACTGCTCCGGTGAGCGTCGAACCCGAGGAAGAGCTCCCCAAATCCACAGAGGTAATCGACGACGGCATAACTGCTCCGGTGAGCGTCGAACCCGAGGAAGAGCTCCAATTGTGCATAACAAAGGCACCGGCTGGGGAGACAATTCAACTGAAGGAGGAGCGAATGTTCGCTCAAATCAGTGAAAGAAGTGAGCAGCAAGAGCACCGGCGATGGGTCCTCGACACGGGGGCAACAAACCATATGACTGGGGCCAAGTCTGCGTTCTCCGAGCTTGACTCGGGGATTCGCGGGACGGTGAAATTCGGCGACGGCTCCGTCATCGAGATCGAAGGGCACGGCACCATCCTGTTGTCGGCAAGGGAGGCAATCATCACAAGCTGACCGGCGTCTACTTCATCCCGAGACTCAAGGCTAATATTGTGAGCCTTGGTCAACTCGATAAGGCCGGCTGCCACATTTCCATCAAGCGCGGGCTACTTAGGATCCGCGATGATCGACGACGGTTGCTCACGCAAGTTCGGTGCACGGCAAACCGCCTTTACATCCTAAAGCTGGAGATAGAGCAACCAGTCAACCTCTCGGCCAGGTACCGAAAGATGGAAGACCTATTAGGAAGAGGTGAACCACCTGGACTGGCGGCGCGCCAACTCGAAGAAGAGGCGGCCGAACAAGACGTGGAGTTTGGAGGACATGCCGCCAGGGACACCGAGCCATAGGGCTCAAAACGGAGTGCAAACGAAATAAGGTATACCACAGGTTTTAGGAGGAGATTGTTAGATAAATAGATAAAACCTGAGTTTTCCCTTGTTTAGATTCACACGATTTACGTTAATGATCTGTTTGACCATTTGACAAACACGTAGAATGGATTAACGAAATTTTAGACGGCAATGTTGTAGGAAGTGACACAGATGCCACTCTCCAGCCATTTTTAGGATAGGTTATATTTAAATAGGAAATCTGTTCACAACCTGAATTAAAGGGTCAGTCAAAATTTCATCATTCTCTCTTCTTATTTTACGCATTTTATTTTCTTCCAACAACCTGTTGTCGACAATTTCCTCCCACCAAAAATAAAAGATTTCCCCTATTATTGAAATCCAACAACATCACCCTGATTTCAGATAATTCTAGAAATAGAATAATTATGAAAAGAATTAGATAAATACATGATACAAATGGCTCTTTTGCAAGTATATGATGTTGAGTTTTAATATAATGATTAATTCAGGAATTGTCTTTCTTCAGAATTGGGGTTTTAAGCCTACTTGAAGACTGTTAACACTGATGTGAATCTTTATCTAGATACCAAATTGTGGGAATAGAAACTTACGAAATTGTGAGAGTCAAATAATCTCTCTAAAAGGTTCCTAGATTTTTTGATTCTAAAATCCTTCAGTGATGTTCTTAAACTCCGATGGGGTTATGTCTCTCGCTGTTTAGTTTTCTGGTCCAAAATGAATGAATGCATGGCCAGTAGATAAAGCCATGAAATACCTACAAATATAAATAGAAATCCAAATTTATTTAATCGAAGTAGAAAGTAATCTGACCATAATACTCGATTGTGGTGGAACTTCACGTTTGAAGCACCTAGGTTCTAAGCTTTTTGGGCGAGGTTTTGGACGGTTTAGTGGCTAGGTGCTGAAATTATTCTTAGGATGATAACCAAATGCATAAGTGCACTCGAAATATTGAAAGAAAGAGCACCCAACATTCAAGGATTACCCCACAGCGACATTTCCAAATAATTTCTTGAAAGATCTTTCAGCTTTTCATTCCTACTTTCATGCCTCTGCTTTCTCCATCCCCAAATAATGTTCTTTTACTTCTCAACATGTAATTTCTGGAGGGAAAAAACAATTTCATTTTTTTCCTTAAAAAATGAGTCATCTCTGAAAACATACTCGATGAGAAGCCAAAAATGTAAATTAATGAACAGTTATTAAACCTATTTGACTGAATGTGTTTAAGAAATAGAAATGTTATGATTGTGTTCCTGTAGGTGTAAGTGGCTTCAAGTTCTACTCTTTATTTTTCTTCATATTTTGTGTCACACAGGATTTGCTACACCGCTATAACATGGCCGGTACCTTCAGTTTCGCTACCAGACGTGGAATTTGTGGGAAGCAGATTTGGTTATGTTGTATGTTTTTTGGTTACAAATTGAGTTGGATGTTCCTACTTCAGTATGTGATTCTCTCACTTTTCCCTAGTTTACAAACCATTATAGAGATGATAGGTGACAGGATATCCCTATATGCTTTTGCTGGTAAAAAGTTTTGCAGAGAAAGTAGGATATTGAGATCTCAGCAATGTCATTGAATAATTGGGAACTGTGTTCTATTGTTATATTTTTATCTGCACAATTATCTTAAGCTAAGCCAAACATGACTAGTTTCCATCCGAGTCCTTGTCACTCAGTTTGATAATCCTGCCACATTCGGTCAGGTGTAGATGTTGCAAAATGCATGGTGATATTGTTCTTGTAAGTTTTGGACCATCAATTCAGCTATGAGTTTGGCTCATTTTTTAACTTCTCTGTTCACTTGGGATTTTTGTACCCAATCTAACCTCGTTTTCTTTGGTCGTGAATTGAGTTTTATTTAGATAAAGCGTTTATCAGTCCATTCCTCACTTTCTCGGCTCCTATTTCGGGTCAAAAACAGACAAAAGCATCATCAACGAACCCAGGGTATGTTTAGTATCTGATCCATTTCTAAATTTATGTTTTCCAAAACAATATTGTGGGACTAAATCTGAATATATTTTCTGAAATTGTGAGTTTATTAGTGTAAATTTTGAAAACAATGTTTTCAATAATGCAATCTTAATTCTCAGCTTAATTCTCAGCCTAATGATTCAGCTTTTGTTGATTCAAGAACTCTTAAATCAATGACAAAAATGACCTTAAATATAACTTAGAAATGACAAAGACGACCCTCCGATATCTAAGGGTGAAAGTTTCACCTCTTTAACTTGAAAGCTTTGTTTCATTCCTAAATTTACAGTCTTTTTATTGCCATTGCCAGCTAG

mRNA sequence

TTCCCCAAAAAGAGCGTAGATTTAAATTGAATAGCCTAATTTCGAATTAGTCAACAATTTTGAGGGCAAGCAGACGCCGCCCCAGTTTGGAACAGCCCAAGGAAACTCCATAGGCTTAGTTTTCTTCCCAGAGGTCTATCAGATCGCTCCTCTTCCAGTTCTTACTTCCAAGTTCTCGCTTCACACAGACAGCCAAACAAATATGGCGGCTTGCTCTACCTGGAAAACCCTACGAATTTCCTCCTCTTCCGCAAGAACCCTCCTTCAACGTTCCTCCTCCTCCCCCCCCTCTGCGTCTCATCTTGTGTCCAAACCTACGATGTCTGCGCCACTTCCTTCTGCAAAGCCGTCCGCATCTTCCCGCTTCTCTGTTCCGAAGCTTACCAACTTCAGGATTTGCTACACCGCTATAACATGGCCGGTACCTTCAGTTTCGCTACCAGACGTGGAATTTGTGGGAAGCAGATTTGATAAAGCGTTTATCAGTCCATTCCTCACTTTCTCGGCTCCTATTTCGGGTCAAAAACAGACAAAAGCATCATCAACGAACCCAGGTCTTTTTATTGCCATTGCCAGCTAG

Coding sequence (CDS)

ATGGCGGCTTGCTCTACCTGGAAAACCCTACGAATTTCCTCCTCTTCCGCAAGAACCCTCCTTCAACGTTCCTCCTCCTCCCCCCCCTCTGCGTCTCATCTTGTGTCCAAACCTACGATGTCTGCGCCACTTCCTTCTGCAAAGCCGTCCGCATCTTCCCGCTTCTCTGTTCCGAAGCTTACCAACTTCAGGATTTGCTACACCGCTATAACATGGCCGGTACCTTCAGTTTCGCTACCAGACGTGGAATTTGTGGGAAGCAGATTTGATAAAGCGTTTATCAGTCCATTCCTCACTTTCTCGGCTCCTATTTCGGGTCAAAAACAGACAAAAGCATCATCAACGAACCCAGGTCTTTTTATTGCCATTGCCAGCTAG

Protein sequence

MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKLTNFRICYTAITWPVPSVSLPDVEFVGSRFDKAFISPFLTFSAPISGQKQTKASSTNPGLFIAIAS
Homology
[Close]
BLAST of CmoCh05G000090 vs. ExPASy TrEMBL
Match: A0A6J1HCT7 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111462447 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.3e-23
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60
          MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL
Sbjct: 1  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60

Query: 61 TNFRI 66
          TNFR+
Sbjct: 61 TNFRL 65

[Close]
BLAST of CmoCh05G000090 vs. ExPASy TrEMBL
Match: A0A6J1K524 (uncharacterized protein LOC111491756 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491756 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.5e-21
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 1  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60
          MAACSTWKTLRISSSSARTLLQRSSSS PSASHLVSKPTMSAPLPSAKPSASSRFSVPKL
Sbjct: 1  MAACSTWKTLRISSSSARTLLQRSSSS-PSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60

Query: 61 TNFRI 66
          TNFR+
Sbjct: 61 TNFRL 64

[Close]
BLAST of CmoCh05G000090 vs. ExPASy TrEMBL
Match: A0A0A0L605 (Radical_SAM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G667190 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.5e-13
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 1  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60
          MAAC +WKT+ ISSSSAR LL RSSSS PSASH VS PTMS  LPSAKP ASSRFSV +L
Sbjct: 1  MAACCSWKTIPISSSSARGLLHRSSSS-PSASHFVSNPTMSGGLPSAKPPASSRFSVHRL 60

Query: 61 TNFRI 66
          TNFR+
Sbjct: 61 TNFRL 64

[Close]
BLAST of CmoCh05G000090 vs. ExPASy TrEMBL
Match: A0A6J1E309 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111025568 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 0 

Query: 1  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60
          MAAC TWKTLR+SSSS RTL+ RSSSS  SASH VS+PT    LPSAKP+AS RFSV KL
Sbjct: 1  MAACCTWKTLRMSSSSTRTLICRSSSS-SSASHFVSRPTKPTGLPSAKPAASPRFSVQKL 60

Query: 61 TNFRI 66
          TN R+
Sbjct: 61 TNLRL 64

[Close]
BLAST of CmoCh05G000090 vs. ExPASy TrEMBL
Match: A0A5D3D8K9 (Dual-specificity RNA methyltransferase RlmN isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00010 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 53/100 (53.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 1   MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60
           MAAC +WKT+ ISSSSAR LL R SSS PSASH VS PTMS  L SA+P+ASSRFSV +L
Sbjct: 1   MAACCSWKTIPISSSSARALLHRPSSS-PSASHFVSIPTMSGGLHSARPAASSRFSVQRL 60

Query: 61  TNFRICYTAITWPVPSVSLPDVEFVGSRFDKAFISPFLTF 101
           TNF +       PV   S+  +  + S    A  +  L+F
Sbjct: 61  TNFSL-------PVELASMQSLMPLRSVTASALFTSLLSF 92

[Close]
BLAST of CmoCh05G000090 vs. NCBI nr
Match: XP_022961783.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita moschata] >KAG6598206.1 hypothetical protein SDJN03_07984, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-22
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60
          MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL
Sbjct: 1  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60

Query: 61 TNFRI 66
          TNFR+
Sbjct: 61 TNFRL 65

[Close]
BLAST of CmoCh05G000090 vs. NCBI nr
Match: KAG7029191.1 (hypothetical protein SDJN02_07528, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-22
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1   MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60
           MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL
Sbjct: 44  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 103

Query: 61  TNFRI 66
           TNFR+
Sbjct: 104 TNFRL 108

[Close]
BLAST of CmoCh05G000090 vs. NCBI nr
Match: XP_022996536.1 (uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima] >XP_023546953.1 uncharacterized protein LOC111805899 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-20
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 1  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60
          MAACSTWKTLRISSSSARTLLQRSSSS PSASHLVSKPTMSAPLPSAKPSASSRFSVPKL
Sbjct: 1  MAACSTWKTLRISSSSARTLLQRSSSS-PSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60

Query: 61 TNFRI 66
          TNFR+
Sbjct: 61 TNFRL 64

[Close]
BLAST of CmoCh05G000090 vs. NCBI nr
Match: XP_038885251.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-15
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 0 

Query: 1  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60
          MAAC +WKTLRISSSSARTLL RSSSS PSASH VSKPTMSA LPSAKP ASSRF V KL
Sbjct: 1  MAACCSWKTLRISSSSARTLLHRSSSS-PSASHFVSKPTMSAGLPSAKPPASSRFYVQKL 60

Query: 61 TNFRI 66
          TNFR+
Sbjct: 61 TNFRL 64

[Close]
BLAST of CmoCh05G000090 vs. NCBI nr
Match: XP_038885250.1 (uncharacterized protein LOC120075707 isoform X1 [Benincasa hispida])

HSP 1 Score: 89.7 bits (221), Expect = 1.9e-14
Identity = 54/63 (85.71%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 1  MAACSTWKTLRISSSSARTLLQRSSSSPPSASHLVSKPTMSAPLPSAKPSASSRFSVPKL 60
          MAAC +WKTLRISSSSARTLL RSSSS PSASH VSKPTMSA LPSAKP ASSRF V KL
Sbjct: 1  MAACCSWKTLRISSSSARTLLHRSSSS-PSASHFVSKPTMSAGLPSAKPPASSRFYVQKL 60

Query: 61 TNF 64
          TNF
Sbjct: 61 TNF 62

The following BLAST results are available for this feature:
BLAST of CmoCh05G000090 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G000090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HCT75.3e-2398.46protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita mos... [more]
A0A6J1K5246.5e-2196.92uncharacterized protein LOC111491756 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A0A0L6056.5e-1376.92Radical_SAM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G667190... [more]
A0A6J1E3092.7e-1172.31protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica cha... [more]
A0A5D3D8K91.0e-1053.00Dual-specificity RNA methyltransferase RlmN isoform X1 OS=Cucumis melo var. maku... [more]
BLAST of CmoCh05G000090 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022961783.11.1e-2298.46protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita mosch... [more]
KAG7029191.11.1e-2298.46hypothetical protein SDJN02_07528, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022996536.11.3e-2096.92uncharacterized protein LOC111491756 isoform X2 [Cucurbita maxima] >XP_023546953... [more]
XP_038885251.12.9e-1584.62protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial isoform X2 [Benincasa hispida][more]
XP_038885250.11.9e-1485.71uncharacterized protein LOC120075707 isoform X1 [Benincasa hispida][more]
BLAST of CmoCh05G000090 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G000090.1CmoCh05G000090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070475 rRNA base methylation
biological_process GO:0030488 tRNA methylation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008173 RNA methyltransferase activity