CmoCh04G031570 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G031570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic
Location	Cmo_Chr04: 21843236 .. 21851305 (+)
RNA-Seq Expression	CmoCh04G031570
Synteny	CmoCh04G031570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGGATCAAAATAACCCTTTTTAAGCCTTTAACACTTGCCCATCTATTTGTTTGATTTTTGTTCTTTTTTTCTTTTTTTCTTTCGGAAAGAAGCTTCGGACTTACTACCGCGAGCGTTGTAAATTGAGCACTTCCACCAAAGAAGTCGTGGGTGGACGAATGAACTGAATCTGAACCATGGCGTTCACAGCAATATCTTCTTCAATGCCGTCTAGTGCTTTTGTGCGTTCAATTCTCTCCTCCCAGTGCATATCAACTCCCACCACTCCTTCACAGAAATCCTCATCTCTCTCGTGGGCATCTTCATTTCCGTCCATTAGCCTATCTAGAGGCTCCCCTTTTGTCTCCTCGAATCCCGCGCATGCCAAGGTATAATTTCTTTACTGGCAGCCTATTCAATTCCCTGTTTATTCCGGAAGATATCTTATTTCCATTTTTAAGTTTATGATTTATCTGTTGTGGACCACGAATTTCTTGCACATGTACTTGGTTTTTATGTGAAAAAATTCTGGAACTAACAAATTTACAAAGGCAAAACAAGTTGCTTTGATTATTCTTAAAAATTTTGGCTACTTTCTCTCTTGTTGTTCACTTCTATTGGGATAAGTTATGTGAAAATCTAGTTTCAGACAAATCGATTGGTATAGGAATGGAATCAAAATAAACCGGAAACCTGAAACCTGAAACACTAGTGCAAAAGTTGGGGAAGGAGAATTATTTGTGAGGAAGTTATCTGTTGTGGAATTGCTGCCAGTTATGTATTCAAGCCAATGGACAATACGAACTCGACTATATTGTAACTTTCATAAAACTTGCTCTTCAGGATATGGTTTGAGAATTTGAAAGAATACTGCCGGCAGTCATCTTTAGGTGAATAGTCGTGCTGTTATTATGGCTGGAAAAGATAGAAATGACTATTACATTGTATACAGAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAAATGGCTTTATTGCTGTTGCTGGGCAGTTCTCCAGTTCCGTATCTTTCAAATTCTTCATTTTCTACCTTGTATTTAAATTGATGACAACCTTTCAGATTTAGAATAAATACACTTGAGCCGTTTTGAACCCATGACCACTTGTTAAACCTGGGAGAAGTTCCCTAAGTTGAAATCCACGGACACATCTTGGTTATATTAGCAACTTACTGACTTGAGCAACATTCAGGAAGTTTTGCATTGAACGAAGTACAACATCTGTCTTTTTGAAGAATTGGAATAGAAAAGCCCCCTTTGGTGGCAATGTTGTTATGGATGCGTGTAACTACCCAAATCCACCGCTAGCATGTTAGATAAAACCTTTGTTTTTTCCTTATTTAGATTCACACGTTTACATTTAATTTCCCTTTGACCATTTGACAAACACGTCGAATGGATTAGCGAATTCTTAGACGTCAATTTTATAGGAAATGACACAGATTCAGTTGGCCACTCTCCACCCATTTAGGATAGGTTGTATTTAAATAGGAAATCTGTTTACAAGATTTAATATCCGGATTTTGAAGAGCAGTCAAACTTTCAGTCCTTCTCTCTCTCTTATCTTTCTTCCAACAACCTCCTGTCGACAATATCCTCTCGGTGTTTTCCCGGGCCGATTATCGAAATCCAACAAGTGGTATCAGAGCCAAGTTGAAGCGATCGGTAGTATACCATCACAGAAGAGCCAACCTATCAACATTCAAGTTGAATAGCTCAAGTGGTCAGAGTGTCGACCTAACAACACACAAGGTCTCAGGTTCGAGTAGAAGAAAATGCAAAGGGCGAAAATAAGCACATCGTGGGGTCCATCCCGAGCAAACTCGCTCACTCCTCCATGCCGCCGTCAAGTGCCGGCATCTCCATCACCACCACGAAGAGGCCGACGTCGTGATGACGGGCGTCGAGGTGTCATTGAGCGAGTGATCACGGAGACAACGACTGCCGTCGTTCAGTACCCGATGTTGACAAGGTCCAACTACAACGAGTGGGCCTTGTTGATGCGCGTCAACCTACAGGCGCATGGGTTATGGCACGCTGTCGAGCCAGAGGAAGGAGAAACAATCGAGTACCGGGAGGATCGGCTGGCGTTCGCCGCCATATTACGATCTGTGCCCCCAGAGATGTTGGCATCTCTCTCCACCAAGCGCACCGCGCAATCGGCCTGGGAAGGAATTAAATCCCGTCGGGTCGGTGTACAGCGAGTGCGGGAATCCAACATTGAGCAGCTGCGGAAGGAGCTCTCGGAGATCTCCTTTAAGGACGTCGAGGTGTCATTGAGCGAGTGATCACGGAGACAACGACTGCCGTCGTTCAGTACCCGATGTTGACAAGGTCCAACTACAACGAGTGGGCCTTGTTGATGCGCGTCAACCTACAGGCGCATGGGTTATGGCACGCTGTCGAGCCAGAGGAAGGAGAAACAATCGAGTACCGGGAGGATCGGCTGGCGTTCGCCGCCATATTACGATCTGTGCCCCCAGAGATGTTGGCATCTCTCTCCACCAAGCGCACCGCGCAATCGGCCTGGGAAGGAATTAAATCCCGTCGGGTCGGTGTACAGCGAGTGCGGGAATCCAACATTGAGCAGCTGCGGAAGGAGCTCTCGGAGATCTGCTTTAAGGACGGCGAATCCGTCGATGATTTTTCAATGCGAAGCACGGGGCTCGCCAACAGCATCACCACACTCGGTGGCAGCATCAACGAGACAGAAATCGTGAAGAAGATGCTGCAGGTCGTCCCATGTGGCTCAATCCGAGGAGGATGAGCCGACCCTTTTCATGGTGACTGCATCAGTCCTACGTGGCGTCGAACCCGAGGAAGAACTCCCCAAATCCACAGAGGTAATCGACGACGGCATAACTGCTCCGGTGAGCGTCGAACAAATGCACCTGGGGAGCCAATTCGACTAAAGGAGGAGCGAGTGCTCGCTCAAATCGGTGAAAGAGGCGAGCAGCAAGAGCACCGGCGATGGGTCCTCGACACGGGGGCAACAAACCATATGACCGGGGTCAAGTCTGCGTTCTCCGAGCTTGACTCGGGGATTCGCGGGACGGTAAAATTCGGCGATGGCTCCGTCGTCGAGATCGAAGGGCACGGCACCATCCTATTCGTCGACAAGGGAGGCAATCATCACAAGCTGACCGGCGTCTACTTCATCCCGAGACTCAAGGCTAATATTGTGAGCCTGGGTCAACTCGATAAGGCCGGCTGCCACATTTCCATCAAACGCGGGCTACTTAGGATCCGCGATGATCGACGACGGTTGCTCACGCAAGTTCGGTGCACGAAAAACTGCCTTTACATCCTAAAGCTAGAGATAGAAAGAGGTGAACCACCTGGACTGGCGGCGCGCCAACTCAAAGAAGAGGCGGCCGAACAAGACGTGGAGTCTGGAGGACATGCCGCCAGGGACACCGAGCAACCGGTCAACCTCTCGGCCAGGTACCAGAAGATGGAAAACCTATTAGGGAGAGGTGAACCACCTGGACTGGCGGTGCGCCAACTCGAAGAAGAGGCGGCCGAACAAGACGTGGAGTCTGGAGGACATGCCGCCAGGGACACTGAGCCATAGGGCTCAAAACGGAGTTCAAACGAAACGAAATAAGGCAGATATAACACAGGTTTTAGGAGGAGATTGTTAGATAAAACAATTGTTAGATAAAACCTTTGTTTTTTCCTTATTTAGATTCACACGTTTACATTTAATTTCCCTTTGACCATTTGACAAACACGTCGAATGGATTAGCGAATTCTTAGACGTCAATTTTCTAGGAAGTGGCACAGGAAATCTGTTTACAAGATTTAATATCCGGATTTTGAAGAGCAGTCAAACTTTCAGTCCTTCTCTCTCTCTTATTTTACGCATTTTATCTTTCTTCCAACAACCTCCTGTCGACAATATCATCTCGGTGTTTTCCCGAAATCCAACATAGCAGATATTGTCCTCTTTGAGCCTTCCCTTTTGGGCTTCCCCTCAAGGCTTTCATGACAGTTATTTTCCTTGGTCTATATCATATTATTGGTTCGAAAGTTTGTTGCTATCTGGAAAGCTTGGGTACAGGTCCAACACTTGCGCTGTAGCCTGTGATTATGAGGCTTACTAGCAGCTAAATGGATAATAGAATGTAGAGCAACCAAACCATTTGGAGTAGAAGCAATAACAAATAGCCGAGGATAGCAAGGCTTTAAAGAAGGTTAGATAACCAAAGATCTTTCCACAAAAAACCAAAAAAAAAAAAAAAAAAATCCTTCTTCGATTCCCCAACTTGAAATGAGCATGGCTTTCTAGTCGAGACCAGTTCTTAGAGATATTTAGCCAAGGGACTGTGTAAACTCAAACCATTTCTTCTACCTGAATGCCAACCATTAATGTCAGACCCATGAATACTAGCAATAACCTGTTGCCAACAAGAAGAAGGTTCATTTATAAAACACCAACCTCATTATGCTATCAAAGCCAAATTCCTGTTTTCAATGCTCCTATTTCAAGACCACCATCATTCTGAGCTTTTGTAACAATGCTCCGTCGAACCAAATGAGTTACTTTACCTCCTTCCTTTCCTTCTCAAAGAAAAATTGAAGAAGTCTTTTGAACTCCACTCTAACCAAAGACCATAAGAACTAAAGACATAATAAGGCCTTCCCTAGATAGAGTAAAGCGCTTCCATCTATCAATAATCAGAATCTATTATACCATAGGATAAGAGTTCCTGCTTTTCGTAATGATTGGAAGAAGGAATGACAACTCCTTTAATCAAAGCAGTTCCTGAATCACAAGAGCAGTTAATGTTTGACTACAAGGTATGGAAGAGAACGTCTTTGGATCTTCACTTGTATCCAAACAGAGTTTAAGAGAAGAGGAGCCCAAGAGTCGCAAACAACCTTCTTCAACATCTGGATTGATTAAAGAAACTTCTGGAAAAATTATAAAAGAAGCAACCATTTCTTTTTTCCGAGAATAATGAAGAGGGGGAGATTCCTTTGATCTCCTTAAATCAATTTAGTACCATGAGGGCTGAGAATCTCTGTACTGGAAGGATTCGAATGCGAAACATTCTTGGCAATAGGCGAGACCTCTTGAACTGGAACGGAAGCATTAACTACAGGGGGAACTGTAGGAAAACCGGCCTCAAGAGACGTCTTCATTAATGGCGTTGGCTGAACTGAAACGTTATCAAGGGAATTTCGTTCGTCTCATTAAAGGGCTGTAATAAAGATTGAATGCCTTACAAGAGTCTTCTCCGGGCAACGAGGCAACTTCTTTTGGAGCGAGTAACGCCTCTTATGGAACGAGGCAACTTATTTTGCTAAAATCTGTCTGCACCACCTCCTATTTTTTCTAATCCAAAAAGATTTGAGTCGTAAGTAAAGTCTTACAAGAATCCGTAAAAACGACGCTGACCTTCCAATTCATCTTTACATCATTCTTATAACTATTAATAGAAGTAACTTTTCCAATATCCAATTTCTTTAGGGAAGCTGAATTTGGTGAGCACTCCTGCTGACACTTCAGAGAATCTTTTACTGTTTTAAGAGAGTCGAGTAACTTCTAAATTTTGTTTTCTTTTGATAAACGACCAGTATGTTTACACTTGTAGGTTTTATTCATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCAAAGCGACCAAACAAGAAATCATGGAAACAACGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTCTTTTCAAAGAAATTTATGCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTAATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGAACAGTTTACCGTCACTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGATGCCATTAAGGAGAACGGGATCATGTTTGTACCTTGAATTTAAAAATCTGGAAGAATGAAACAGAAAAAGAGAACGACTTAAGGTAAGGCCTCTTATATAGGCGCAGAGGATGAGACTGTAAAAGCTAACATCTTCCTATTTAACTCGTTTGAAATATTCGAAGCTGTTGCTCTTACTAAAAACTCCCTTGCATGCTATGCCAGATATGATTCTATTGGCAGACTTATCTCATGATTTCGAGAGCTAACTTCTGAAGTTTCTTTACTATATTGTGAAAGGAAGATTGTTAGGACATGGGTAAGCATAGAACGTTCTTCTAGATATGGCAGTAGAGTCATAATGTCAATAATCACAGAAGAGGAGGGGTGGGGTGGTGGATTGGATATCTGCTTTTCTTCTCCATCTTACTATTTCAAATTTGTTCCGTTTTTATTCCTAAGCTTTCAAAAGATCTCTCTTTAGATGTTTTATTTTGGCATCAACTTTACATATTTATTTTAGTTCCTCTCACGCAATATCTACCACTCAAAAGTGTGAATAGATATGAAAATATTATTATTACTCAACGAAAGAATACAGATTTAAGAATAAGAAAAAGAATTGGTATCGAATGTTCAATCTTCATTCATATTCACAAAAAAAGAATTGGGGTCGAATGTTCAATCTTCATTCATATTCACAACTTAGGATACAAGATACTAAATAATGTATACAAATAACATATAAACTAATTCAAACTAAAATAAGTGACATCCTCAACTTTAAAAATTGACTATTTAATTCTTACCTTGTTTGATCATTTGAGCATATATTTGCACTGTATAACTTGAAATTAAGTACAAGGACTAAATTTATGAAATAAGTCTTAGGAACAAAATGATTATATTTAAAGAGTAACGTGATTCATGTAGACAAGGGAAGTTGTAGGACAAAATGATTATTTTTAAAAGTGTAGGGCCTTCTTTTTATGCGAATTAAACAAAATTTTCGCTATCAATGGCCAGTGTGGACAACGGGTTCTTGAGGGTCCCACAAAAGACGAAGGCAAAGGCAACGGCAGCAGCAGGTGTAAGTATCTCATCCATAGAAACAAAACCAGTGGTAGTGGTTTTCTGTTAGTCTTTCTTAACCTTGCTTCCGTTTCATTCCGTTCCTTGGCCATGGCCTCTCCTTCTATTCCCAATTCTCTCTTCTTGAACAGAACCTTCCACTCGCCTGCTCGCACATTCCGTACATGGCCGGTCTACGCATCCCAACCTCCCAACAACCGCCAAAGGCCTCCACCGGGCGTCGACACAAGAATTCATTGGCAAAATGATGAAGAAGGTTGGATTGGAGGCCCTACGCCTTCCCAGTCCCGGCGAGACCAGAAGGAGCAGAATAATAATAATAATAATAATGCGTTGGGTCCAAGTTTGACCGATTTGCTCAATAACTCATCCGACTCTCACTACCAGTATGTAAGCTTGGCTAGCTGGCTGCATATGCTTTGTTAATTTCGTTTTGAATTTGATTTATGTTGGTATCATGGTTTGTTCTGTGTATATATGCGCGCAGGTTCTTAGGAGTTGGTGCTGAGGCTGACCTAGAAGAGATAAAAAGTGCGTATCGGAGATTGTCAAAGGAATATCATCCCGACACCACCTCTCTCCCTCTAAAAGCTGCGTCCGACAAATTTATGAAATTAAAACAAGTGTACGAGGTCCTCAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAGCTGAGGATCAAGTTGGAAGATCCTTACGAGCAGGAGCTGCAAAACTGGAAATCCACTCCAGATATGGTCGATCGCCTTGCTGGAAGGAACATGGACTTGAGTGATCAGGCCACCACAGCTCTTACCTTGGATATCCTTATCATTCTCTTTGCTATAGGCTGCATTGTGTATGTTCTCCTCTTTAAGGAACCATACTATTGATTAGATACGAACTACCATACAAGTACAACACACTTCCAATCGCTTCCATTTCCTTCCAAAATCAAATTGAATATCGAATGGTACTTTTCTTTCCAGCGACACACAAATTATTCAGTCATCC

mRNA sequence

AATTGGATCAAAATAACCCTTTTTAAGCCTTTAACACTTGCCCATCTATTTGTTTGATTTTTGTTCTTTTTTTCTTTTTTTCTTTCGGAAAGAAGCTTCGGACTTACTACCGCGAGCGTTGTAAATTGAGCACTTCCACCAAAGAAGTCGTGGGTGGACGAATGAACTGAATCTGAACCATGGCGTTCACAGCAATATCTTCTTCAATGCCGTCTAGTGCTTTTGTGCGTTCAATTCTCTCCTCCCAGTGCATATCAACTCCCACCACTCCTTCACAGAAATCCTCATCTCTCTCGTGGGCATCTTCATTTCCGTCCATTAGCCTATCTAGAGGCTCCCCTTTTGTCTCCTCGAATCCCGCGCATGCCAAGAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAAATGGCTTTATTGCTGTTGCTGGGCAGTTCTCCAGTTCCGTATCTTTCAAATTCTTCATTTTCTACCTTGTTTTATTCATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCAAAGCGACCAAACAAGAAATCATGGAAACAACGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTCTTTTCAAAGAAATTTATGCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTAATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGAACAGTTTACCGTCACTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGATGCCATTAAGGAGAACGGGATCATGGCCTTCTTTTTATGCGAATTAAACAAAATTTTCGCTATCAATGGCCAGTGTGGACAACGGGTTCTTGAGGGTCCCACAAAAGACGAAGGCAAAGGCAACGGCAGCAGCAGGTGTAAGTATCTCATCCATAGAAACAAAACCAGTGGTAGTGGTTTTCTGTTAGTCTTTCTTAACCTTGCTTCCGTTTCATTCCGTTCCTTGGCCATGGCCTCTCCTTCTATTCCCAATTCTCTCTTCTTGAACAGAACCTTCCACTCGCCTGCTCGCACATTCCGTACATGGCCGGTCTACGCATCCCAACCTCCCAACAACCGCCAAAGGCCTCCACCGGGCGTCGACACAAGAATTCATTGGCAAAATGATGAAGAAGGTTGGATTGGAGGCCCTACGCCTTCCCAGTCCCGGCGAGACCAGAAGGAGCAGAATAATAATAATAATAATAATGCGTTGGGTCCAAGTTTGACCGATTTGCTCAATAACTCATCCGACTCTCACTACCAGTTCTTAGGAGTTGGTGCTGAGGCTGACCTAGAAGAGATAAAAAGTGCGTATCGGAGATTGTCAAAGGAATATCATCCCGACACCACCTCTCTCCCTCTAAAAGCTGCGTCCGACAAATTTATGAAATTAAAACAAGTGTACGAGGTCCTCAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAGCTGAGGATCAAGTTGGAAGATCCTTACGAGCAGGAGCTGCAAAACTGGAAATCCACTCCAGATATGGTCGATCGCCTTGCTGGAAGGAACATGGACTTGAGTGATCAGGCCACCACAGCTCTTACCTTGGATATCCTTATCATTCTCTTTGCTATAGGCTGCATTGTGTATGTTCTCCTCTTTAAGGAACCATACTATTGATTAGATACGAACTACCATACAAGTACAACACACTTCCAATCGCTTCCATTTCCTTCCAAAATCAAATTGAATATCGAATGGTACTTTTCTTTCCAGCGACACACAAATTATTCAGTCATCC

Coding sequence (CDS)

ATGGCGTTCACAGCAATATCTTCTTCAATGCCGTCTAGTGCTTTTGTGCGTTCAATTCTCTCCTCCCAGTGCATATCAACTCCCACCACTCCTTCACAGAAATCCTCATCTCTCTCGTGGGCATCTTCATTTCCGTCCATTAGCCTATCTAGAGGCTCCCCTTTTGTCTCCTCGAATCCCGCGCATGCCAAGAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAAATGGCTTTATTGCTGTTGCTGGGCAGTTCTCCAGTTCCGTATCTTTCAAATTCTTCATTTTCTACCTTGTTTTATTCATACAATCAGCTTGGACAAGAAGGTCACGAGGGGAGGCTGCAAAGCGACCAAACAAGAAATCATGGAAACAACGGACAGATATGTATATGAGGCCATTTTTACTAAATGTTTTCTTTTCAAAGAAATTTATGCATGCGAAGGTAATGCATAGAGGAACAAGCAAAGTAATATCAGTGGCGACAACAAATGCAAAGGATCTTAGGAACAGTTTACCGTCACTTACAGATCACAATGCATGTAGAGTAATAGGGAAGCTTATTGCAGAGAGATCAAAGGAAGCAGATGTATATGCAATGTCGTACGAGCCTAGGAAGGATGAAAGAATTGAAGGTAAGCTTGGTATTGTTATTGATGCCATTAAGGAGAACGGGATCATGGCCTTCTTTTTATGCGAATTAAACAAAATTTTCGCTATCAATGGCCAGTGTGGACAACGGGTTCTTGAGGGTCCCACAAAAGACGAAGGCAAAGGCAACGGCAGCAGCAGGTGTAAGTATCTCATCCATAGAAACAAAACCAGTGGTAGTGGTTTTCTGTTAGTCTTTCTTAACCTTGCTTCCGTTTCATTCCGTTCCTTGGCCATGGCCTCTCCTTCTATTCCCAATTCTCTCTTCTTGAACAGAACCTTCCACTCGCCTGCTCGCACATTCCGTACATGGCCGGTCTACGCATCCCAACCTCCCAACAACCGCCAAAGGCCTCCACCGGGCGTCGACACAAGAATTCATTGGCAAAATGATGAAGAAGGTTGGATTGGAGGCCCTACGCCTTCCCAGTCCCGGCGAGACCAGAAGGAGCAGAATAATAATAATAATAATAATGCGTTGGGTCCAAGTTTGACCGATTTGCTCAATAACTCATCCGACTCTCACTACCAGTTCTTAGGAGTTGGTGCTGAGGCTGACCTAGAAGAGATAAAAAGTGCGTATCGGAGATTGTCAAAGGAATATCATCCCGACACCACCTCTCTCCCTCTAAAAGCTGCGTCCGACAAATTTATGAAATTAAAACAAGTGTACGAGGTCCTCAGCAACGAAGAAAGCCGCAAGTTCTACGACTGGACGCTTGCTCAAGAAGAGGCAAGCCGCCAAGCTGATAAGCTGAGGATCAAGTTGGAAGATCCTTACGAGCAGGAGCTGCAAAACTGGAAATCCACTCCAGATATGGTCGATCGCCTTGCTGGAAGGAACATGGACTTGAGTGATCAGGCCACCACAGCTCTTACCTTGGATATCCTTATCATTCTCTTTGCTATAGGCTGCATTGTGTATGTTCTCCTCTTTAAGGAACCATACTATTGA

Protein sequence

MAFTAISSSMPSSAFVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNPAHAKRVLNYFLLRSRSNGFIAVAGQFSSSVSFKFFIFYLVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDMYMRPFLLNVFFSKKFMHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDAIKENGIMAFFLCELNKIFAINGQCGQRVLEGPTKDEGKGNGSSRCKYLIHRNKTSGSGFLLVFLNLASVSFRSLAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY

Homology

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BLAST of CmoCh04G031570 vs. ExPASy Swiss-Prot
Match: Q9SMS0 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhT PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.4e-69
Identity = 137/217 (63.13%), Postives = 169/217 (77.88%), Query Frame = 0


Query: 320 RTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSQSRRDQKEQNNNNNNNALG 379
           R   +YASQ P    +P PGVDTRIHW++ +EGWIGG      R D  +  + +  N L 
Sbjct: 39  RVTRIYASQGPTKPSKPSPGVDTRIHWESPDEGWIGG------RSDPAKSVDEDKTNLLS 98

Query: 380 -PSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKL 439
                +L+ +S DSHYQFLGV  +ADLEEIKSAYRRLSKEYHPDTTSLPLK AS+KFMKL
Sbjct: 99  DEKFAELIKDSFDSHYQFLGVSTDADLEEIKSAYRRLSKEYHPDTTSLPLKTASEKFMKL 158

Query: 440 KQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGR 499
           ++VY VLS+EE+R+FYDWTLAQE ASRQA+K+R+KLEDP EQ+ + ++S PDMVDRL GR
Sbjct: 159 REVYNVLSDEETRRFYDWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRLGGR 218

Query: 500 NMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           NM+LSDQA TALT DILI+LFA+ CI +V++FK+P Y
Sbjct: 219 NMELSDQAMTALTFDILIVLFAVCCIAFVIVFKDPSY 249

[Close]

BLAST of CmoCh04G031570 vs. ExPASy Swiss-Prot
Match: Q75VW3 (Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) OX=608538 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-10
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 393 HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 452
           +YQ LGV  +A  EEIK AYRRL+KEYHPD ++   + AS+KF ++ + Y +LS+EE RK
Sbjct: 6   YYQILGVSKDATAEEIKKAYRRLAKEYHPDISA--DENASEKFKEINEAYHILSDEERRK 65

Query: 453 FYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTP 490
            YD  L   +     D +   ++D  E   Q  + +P
Sbjct: 66  EYDRILKSGDEKSYRDFMEY-IQDFLESIWQGMRRSP 99

[Close]

BLAST of CmoCh04G031570 vs. ExPASy Swiss-Prot
Match: Q5N0G1 (Chaperone protein DnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.3e-10
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 393 HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 452
           +YQ LGV  +AD +EIK AYRRL+++YHPD    P   A DKF ++ + YEVLS  E+R 
Sbjct: 5   YYQLLGVARDADKDEIKRAYRRLARKYHPDVNKEP--GAEDKFKEINRAYEVLSEPETRA 64

Query: 453 FYD 456
            YD
Sbjct: 65  RYD 65

[Close]

BLAST of CmoCh04G031570 vs. ExPASy Swiss-Prot
Match: Q5KWZ8 (Chaperone protein DnaJ OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.3e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 393 HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 452
           +Y+ LGV   A  +EIK AYR+LSK+YHPD    P   A++KF ++K+ YEVLS++E R 
Sbjct: 6   YYEILGVSKNATKDEIKKAYRKLSKQYHPDVNKAP--DAAEKFKEIKEAYEVLSDDEKRA 65

Query: 453 FYD 456
            YD
Sbjct: 66  RYD 66

[Close]

BLAST of CmoCh04G031570 vs. ExPASy Swiss-Prot
Match: Q45552 (Chaperone protein DnaJ OS=Geobacillus stearothermophilus OX=1422 GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.6e-10
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 393 HYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRK 452
           +Y+ LGV   A  EEIK AYR+LSK+YHPD    P   A++KF ++K+ YEVLS+++ R 
Sbjct: 6   YYEILGVSKNATKEEIKKAYRKLSKKYHPDVNKEP--DAAEKFKEIKEAYEVLSDDQKRA 65

Query: 453 FYD 456
            YD
Sbjct: 66  HYD 66

[Close]

BLAST of CmoCh04G031570 vs. ExPASy TrEMBL
Match: A0A6J1HJ56 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464036 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 2.5e-130
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 297 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG 356
           MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG
Sbjct: 1   MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG 60

Query: 357 PTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS 416
           PTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS
Sbjct: 61  PTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS 120

Query: 417 KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED 476
           KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED
Sbjct: 121 KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED 180

Query: 477 PYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           PYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY
Sbjct: 181 PYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 239

[Close]

BLAST of CmoCh04G031570 vs. ExPASy TrEMBL
Match: A0A6J1JM84 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487152 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 3.5e-124
Identity = 233/241 (96.68%), Postives = 234/241 (97.10%), Query Frame = 0


Query: 295 LAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 354
           +AMASP IPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI
Sbjct: 1   MAMASP-IPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 60

Query: 355 GGPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 414
           GGPTPSQSRRDQKEQ    NNNALGPS  DLLNNSSDSHYQFLGVGAEADLEEIKSAYRR
Sbjct: 61  GGPTPSQSRRDQKEQ----NNNALGPSFADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120

Query: 415 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 474
           LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL
Sbjct: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180

Query: 475 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 534
           EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY
Sbjct: 181 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 236

Query: 535 Y 536
           Y
Sbjct: 241 Y 236

[Close]

BLAST of CmoCh04G031570 vs. ExPASy TrEMBL
Match: A0A5D3BJW7 (NAD(P)H-quinone oxidoreductase subunit T OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002250 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 2.6e-103
Identity = 197/240 (82.08%), Postives = 212/240 (88.33%), Query Frame = 0


Query: 297 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 356
           MAS   PNSL  ++TFHSPA  FRTW VYA+Q PNN R+RPPPGVDTRIHWQN+EEGWIG
Sbjct: 1   MASSPFPNSLLFHKTFHSPAPAFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 357 GPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRL 416
           G      ++ +    NN +NN LGPSL DLLNNSSDSHYQFLGVGAEA++EEIKSAYRRL
Sbjct: 61  G------KKKESNDQNNESNNMLGPSLADLLNNSSDSHYQFLGVGAEAEVEEIKSAYRRL 120

Query: 417 SKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 476
           SKEYHPDTTSLPLK AS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE
Sbjct: 121 SKEYHPDTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 180

Query: 477 DPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           DPYEQELQNW+STPDMVDRL GRNM+LSDQATTALTLDI IILFAI CIVYVL+FKEPYY
Sbjct: 181 DPYEQELQNWQSTPDMVDRLGGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEPYY 234

[Close]

BLAST of CmoCh04G031570 vs. ExPASy TrEMBL
Match: A0A1S3CHS6 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501040 PE=4 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 2.6e-103
Identity = 197/240 (82.08%), Postives = 212/240 (88.33%), Query Frame = 0


Query: 297 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNN-RQRPPPGVDTRIHWQNDEEGWIG 356
           MAS   PNSL  ++TFHSPA  FRTW VYA+Q PNN R+RPPPGVDTRIHWQN+EEGWIG
Sbjct: 1   MASSPFPNSLLFHKTFHSPAPAFRTWRVYAAQAPNNDRRRPPPGVDTRIHWQNEEEGWIG 60

Query: 357 GPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRL 416
           G      ++ +    NN +NN LGPSL DLLNNSSDSHYQFLGVGAEA++EEIKSAYRRL
Sbjct: 61  G------KKKESNDQNNESNNMLGPSLADLLNNSSDSHYQFLGVGAEAEVEEIKSAYRRL 120

Query: 417 SKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 476
           SKEYHPDTTSLPLK AS+KFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE
Sbjct: 121 SKEYHPDTTSLPLKVASEKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 180

Query: 477 DPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           DPYEQELQNW+STPDMVDRL GRNM+LSDQATTALTLDI IILFAI CIVYVL+FKEPYY
Sbjct: 181 DPYEQELQNWQSTPDMVDRLGGRNMELSDQATTALTLDIFIILFAIACIVYVLIFKEPYY 234

[Close]

BLAST of CmoCh04G031570 vs. ExPASy TrEMBL
Match: A0A6J1DG49 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020201 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 1.9e-101
Identity = 200/240 (83.33%), Postives = 215/240 (89.58%), Query Frame = 0


Query: 297 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPP-PGVDTRIHWQNDEEGWIG 356
           MASP IPNSLFL+R+ + PA   R W VYASQ PNNRQRP  PGVDTRIHWQN+EEGWIG
Sbjct: 1   MASPPIPNSLFLHRSSYVPA---RIWRVYASQAPNNRQRPSLPGVDTRIHWQNEEEGWIG 60

Query: 357 GPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRL 416
           GP PSQS RDQ +Q ++      GP+L +LLNNSSDSHYQFLGV AEA+LEEIKSAYRRL
Sbjct: 61  GPMPSQSNRDQNKQESS------GPNLAELLNNSSDSHYQFLGVNAEAELEEIKSAYRRL 120

Query: 417 SKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLE 476
           SKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQA+KLRIKLE
Sbjct: 121 SKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQAEKLRIKLE 180

Query: 477 DPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           DPYEQEL+N+KSTPDMVDRLAGRNM+LSDQATTALTLDI IILFAI CIVYVL+FKEPYY
Sbjct: 181 DPYEQELENFKSTPDMVDRLAGRNMELSDQATTALTLDIFIILFAICCIVYVLIFKEPYY 231

[Close]

BLAST of CmoCh04G031570 vs. NCBI nr
Match: KAG7033427.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 819.3 bits (2115), Expect = 1.9e-233
Identity = 450/535 (84.11%), Postives = 455/535 (85.05%), Query Frame = 0


Query: 1   MAFTAISSSMPSSAFVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60
           MAFTAISSSMPSSAFVRSILSSQCISTPTTP QKSSSLSWASSFPSISLSRGSPFVSSNP
Sbjct: 1   MAFTAISSSMPSSAFVRSILSSQCISTPTTP-QKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 61  AHAKRVLNYFLLRSRSNGFIAVAGQFSSSVSFKFFIFYLVLFIQSAWTRRSRGEAAKRPN 120
           AHAK                                   VLFIQSAWTRRSRGEAAKRPN
Sbjct: 61  AHAK-----------------------------------VLFIQSAWTRRSRGEAAKRPN 120

Query: 121 KKSWKQRTDMYMRPFLLNVFFSKKFMHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHN 180
           KKSWKQRTDMYMRPFLLNVFFSKKF+HAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHN
Sbjct: 121 KKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHN 180

Query: 181 ACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDAIKENGIMAFFLCELNKIFA 240
           ACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVID IKENGI+            
Sbjct: 181 ACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDTIKENGII-----------V 240

Query: 241 INGQCGQRVLEGPTKDEGKGNGSSRCKYLIHRNKTSGSGFLLVFLNLASVSFRSLAMASP 300
            NG      L  P K + K   ++         K       LVFLNLASVSFRSLAMASP
Sbjct: 241 DNG-----FLRAPQKTKAKAAAAAGVSISSIETKPV-VVVELVFLNLASVSFRSLAMASP 300

Query: 301 SIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPS 360
           SIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPS
Sbjct: 301 SIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPS 360

Query: 361 QSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYH 420
           QSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYH
Sbjct: 361 QSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYH 420

Query: 421 PDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQ 480
           PDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQ
Sbjct: 421 PDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQ 480

Query: 481 ELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           ELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY
Sbjct: 481 ELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 482

[Close]

BLAST of CmoCh04G031570 vs. NCBI nr
Match: KAG6602740.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 795.0 bits (2052), Expect = 3.9e-226
Identity = 440/536 (82.09%), Postives = 448/536 (83.58%), Query Frame = 0


Query: 1   MAFTAISSSMPSSAFVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60
           MAFTAISSSMPSSAFVRSILSSQCISTPTTP QKSSSLSWASSFPSISLSRGSPFVSSNP
Sbjct: 1   MAFTAISSSMPSSAFVRSILSSQCISTPTTP-QKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 61  AHAKRVLNYFLLRSRSNGFIAVAGQFSSSVSFKFFIFYLVLFIQSAWTRRSRGEAAKRPN 120
           AHAK                                   VLFIQSAWTRRSRGEAAKRPN
Sbjct: 61  AHAK-----------------------------------VLFIQSAWTRRSRGEAAKRPN 120

Query: 121 KKSWKQRTDMYMRPFLLNVFFSKKFMHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHN 180
           KKSWKQRTDMYMRPFLLNVFFSKKF+HAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHN
Sbjct: 121 KKSWKQRTDMYMRPFLLNVFFSKKFIHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHN 180

Query: 181 ACRVIGKLIAERSKEADVYAMSYEPRKDERIEGK-LGIVIDAIKENGIMAFFLCELNKIF 240
           ACRVIGKLIAERSKEADVYAMSYEPRKDERIEG+ LG  +D    NG +           
Sbjct: 181 ACRVIGKLIAERSKEADVYAMSYEPRKDERIEGRLLGHGVD----NGFL----------- 240

Query: 241 AINGQCGQRVLEGPTKDEGKGNGSSRCKYLIHRNKTSGSGFLLVFLNLASVSFRSLAMAS 300
               +  Q+     T   G    S   K ++           LVFLNLASVSFRSLAMAS
Sbjct: 241 ----RAPQKTKAKATAAAGVSISSIETKPVVVVE--------LVFLNLASVSFRSLAMAS 300

Query: 301 PSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTP 360
           PSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTP
Sbjct: 301 PSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTP 360

Query: 361 SQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEY 420
           SQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEY
Sbjct: 361 SQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEY 420

Query: 421 HPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYE 480
           HPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYE
Sbjct: 421 HPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYE 473

Query: 481 QELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           QELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY
Sbjct: 481 QELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 473

[Close]

BLAST of CmoCh04G031570 vs. NCBI nr
Match: XP_022963850.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita moschata])

HSP 1 Score: 475.7 bits (1223), Expect = 5.2e-130
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 297 MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG 356
           MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG
Sbjct: 1   MASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGG 60

Query: 357 PTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS 416
           PTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS
Sbjct: 61  PTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLS 120

Query: 417 KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED 476
           KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED
Sbjct: 121 KEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLED 180

Query: 477 PYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           PYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY
Sbjct: 181 PYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 239

[Close]

BLAST of CmoCh04G031570 vs. NCBI nr
Match: XP_023521950.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023553300.1 NAD(P)H-quinone oxidoreductase subunit T, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 471.5 bits (1212), Expect = 9.8e-129
Identity = 237/241 (98.34%), Postives = 239/241 (99.17%), Query Frame = 0


Query: 295 LAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 354
           +AMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI
Sbjct: 1   MAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 60

Query: 355 GGPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 414
           GGP PSQSRRDQKEQNNNNNNNALGPSL DLLNNSSDSHYQFLGVGAEADLEEIKSAYRR
Sbjct: 61  GGPRPSQSRRDQKEQNNNNNNNALGPSLADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120

Query: 415 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 474
           LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL
Sbjct: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180

Query: 475 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 534
           EDPYEQELQ+WKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY
Sbjct: 181 EDPYEQELQSWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 240

Query: 535 Y 536
           Y
Sbjct: 241 Y 241

[Close]

BLAST of CmoCh04G031570 vs. NCBI nr
Match: XP_022990181.1 (NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita maxima])

HSP 1 Score: 455.3 bits (1170), Expect = 7.3e-124
Identity = 233/241 (96.68%), Postives = 234/241 (97.10%), Query Frame = 0


Query: 295 LAMASPSIPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 354
           +AMASP IPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI
Sbjct: 1   MAMASP-IPNSLFLNRTFHSPARTFRTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWI 60

Query: 355 GGPTPSQSRRDQKEQNNNNNNNALGPSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 414
           GGPTPSQSRRDQKEQ    NNNALGPS  DLLNNSSDSHYQFLGVGAEADLEEIKSAYRR
Sbjct: 61  GGPTPSQSRRDQKEQ----NNNALGPSFADLLNNSSDSHYQFLGVGAEADLEEIKSAYRR 120

Query: 415 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 474
           LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL
Sbjct: 121 LSKEYHPDTTSLPLKAASDKFMKLKQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKL 180

Query: 475 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 534
           EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY
Sbjct: 181 EDPYEQELQNWKSTPDMVDRLAGRNMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPY 236

Query: 535 Y 536
           Y
Sbjct: 241 Y 236

[Close]

BLAST of CmoCh04G031570 vs. TAIR 10
Match: AT4G09350.1 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 265.4 bits (677), Expect = 1.0e-70
Identity = 137/217 (63.13%), Postives = 169/217 (77.88%), Query Frame = 0


Query: 320 RTWPVYASQPPNNRQRPPPGVDTRIHWQNDEEGWIGGPTPSQSRRDQKEQNNNNNNNALG 379
           R   +YASQ P    +P PGVDTRIHW++ +EGWIGG      R D  +  + +  N L 
Sbjct: 39  RVTRIYASQGPTKPSKPSPGVDTRIHWESPDEGWIGG------RSDPAKSVDEDKTNLLS 98

Query: 380 -PSLTDLLNNSSDSHYQFLGVGAEADLEEIKSAYRRLSKEYHPDTTSLPLKAASDKFMKL 439
                +L+ +S DSHYQFLGV  +ADLEEIKSAYRRLSKEYHPDTTSLPLK AS+KFMKL
Sbjct: 99  DEKFAELIKDSFDSHYQFLGVSTDADLEEIKSAYRRLSKEYHPDTTSLPLKTASEKFMKL 158

Query: 440 KQVYEVLSNEESRKFYDWTLAQEEASRQADKLRIKLEDPYEQELQNWKSTPDMVDRLAGR 499
           ++VY VLS+EE+R+FYDWTLAQE ASRQA+K+R+KLEDP EQ+ + ++S PDMVDRL GR
Sbjct: 159 REVYNVLSDEETRRFYDWTLAQEVASRQAEKMRMKLEDPKEQDFRGYESIPDMVDRLGGR 218

Query: 500 NMDLSDQATTALTLDILIILFAIGCIVYVLLFKEPYY 536
           NM+LSDQA TALT DILI+LFA+ CI +V++FK+P Y
Sbjct: 219 NMELSDQAMTALTFDILIVLFAVCCIAFVIVFKDPSY 249

[Close]

BLAST of CmoCh04G031570 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 216.1 bits (549), Expect = 6.9e-56
Identity = 126/218 (57.80%), Postives = 148/218 (67.89%), Query Frame = 0


Query: 19  ILSSQCISTP----TTPSQK----SSSLSWASSFPSISLSRGSPFVSSNPAHAKRVLNYF 78
           ++SS C   P     T S +     S++SW SSFP +S+  GS  V S+P   K      
Sbjct: 4   LISSTCSLVPFDSNLTRSNRFTKLGSAVSWQSSFPKLSIEIGS--VISSPIVKKD----- 63

Query: 79  LLRSRSNGFIAVAGQFSSSVSFKFFIFYLVLFIQSAWTRRSRGEAAKRPNKKSWKQRTDM 138
                                          F+Q+AWTRRSRGEAAKRPN+KSWKQRTDM
Sbjct: 64  ------------------------------SFVQAAWTRRSRGEAAKRPNRKSWKQRTDM 123

Query: 139 YMRPFLLNVFFSKKFMHAKVMHRGTSKVISVATTNAKDLRNSLPSLTDHNACRVIGKLIA 198
           YMRPFLLNVFFS+KF+HAKVMHR TSKVISVATTNA+D+R ++PSL D+ ACR+IGKLIA
Sbjct: 124 YMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIGKLIA 183

Query: 199 ERSKEADVYAMSYEPRKDERIEGKLGIVIDAIKENGIM 229
           ERS EADVYA+SYEPRK ERIEGKLGIVID IKE+GI+
Sbjct: 184 ERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGII 184

[Close]

BLAST of CmoCh04G031570 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 106.7 bits (265), Expect = 5.9e-23
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 116 AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFMHAKVMHRGTSKVISVATTNAKDLRNSLP 175
           +K P+K  S+KQRT  YM PF L+VF SK+F+ A + HR T + ++VA TN+KD++  L 
Sbjct: 70  SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 129

Query: 176 SLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDAIKENGI 228
           S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGK+  V+ ++ +NGI
Sbjct: 130 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182

[Close]

BLAST of CmoCh04G031570 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 106.7 bits (265), Expect = 5.9e-23
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 116 AKRPNKK-SWKQRTDMYMRPFLLNVFFSKKFMHAKVMHRGTSKVISVATTNAKDLRNSLP 175
           +K P+K  S+KQRT  YM PF L+VF SK+F+ A + HR T + ++VA TN+KD++  L 
Sbjct: 115 SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLR 174

Query: 176 SLTDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDAIKENGI 228
           S  D  AC  IG++++ER+KEADVY  SY PR  ++ EGK+  V+ ++ +NGI
Sbjct: 175 SRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of CmoCh04G031570 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 87.0 bits (214), Expect = 4.9e-17
Identity = 44/111 (39.64%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 117 KRPNKKSWKQRTDMYMRPFLLNVFFSKKFMHAKVMHRGTSKVISVATTNAKDLRNSLPSL 176
           KR    ++ Q T  +  PF L+++ SK+ + A V+HR TSKV++VA + +KD++  L S 
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSR 239

Query: 177 TDHNACRVIGKLIAERSKEADVYAMSYEPRKDERIEGKLGIVIDAIKENGI 228
            +  AC  +G ++A+RS E D++ + Y PRK ++IEGKL +V+ A+ +NG+
Sbjct: 240 RNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

The following BLAST results are available for this feature:

BLAST of CmoCh04G031570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMS0	1.4e-69	63.13	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q75VW3	1.9e-10	41.24	Chaperone protein DnaJ OS=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12...	[more]
Q5N0G1	3.3e-10	52.38	Chaperone protein DnaJ OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG...	[more]
Q5KWZ8	4.3e-10	50.79	Chaperone protein DnaJ OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=...	[more]
Q45552	5.6e-10	50.79	Chaperone protein DnaJ OS=Geobacillus stearothermophilus OX=1422 GN=dnaJ PE=3 SV...	[more]

BLAST of CmoCh04G031570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJ56	2.5e-130	100.00	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A6J1JM84	3.5e-124	96.68	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A5D3BJW7	2.6e-103	82.08	NAD(P)H-quinone oxidoreductase subunit T OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CHS6	2.6e-103	82.08	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A6J1DG49	1.9e-101	83.33	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic OS=Momordica charantia O...	[more]

BLAST of CmoCh04G031570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033427.1	1.9e-233	84.11	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita argyrosperma ...	[more]
KAG6602740.1	3.9e-226	82.09	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic, partial [Cucurbita argy...	[more]
XP_022963850.1	5.2e-130	100.00	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita moschata]	[more]
XP_023521950.1	9.8e-129	98.34	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022990181.1	7.3e-124	96.68	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic [Cucurbita maxima]	[more]

BLAST of CmoCh04G031570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09350.1	1.0e-70	63.13	Chaperone DnaJ-domain superfamily protein	[more]
AT3G20230.1	6.9e-56	57.80	Ribosomal L18p/L5e family protein	[more]
AT1G08845.1	5.9e-23	47.79	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	5.9e-23	47.79	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	4.9e-17	39.64	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 428..448
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 359..385
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 323..385
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 124..227 e-value: 2.43004E-16 score: 72.5727
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 131..227
IPR001623	DnaJ domain	PRINTS	PR00625	JDOMAIN	coord: 430..450 score: 35.13 coord: 394..412 score: 48.1 coord: 412..427 score: 43.45
IPR001623	DnaJ domain	SMART	SM00271	dnaj_3	coord: 391..450 e-value: 2.3E-18 score: 77.0
IPR001623	DnaJ domain	PFAM	PF00226	DnaJ	coord: 393..455 e-value: 4.4E-19 score: 68.4
IPR001623	DnaJ domain	PROSITE	PS50076	DNAJ_2	coord: 392..458 score: 18.029549
IPR001623	DnaJ domain	CDD	cd06257	DnaJ	coord: 393..447 e-value: 1.84729E-17 score: 74.5041
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 104..239 e-value: 1.2E-15 score: 59.7
IPR036869	Chaperone J-domain superfamily	GENE3D	1.10.287.110	DnaJ domain	coord: 381..476 e-value: 4.2E-20 score: 73.9
IPR036869	Chaperone J-domain superfamily	SUPERFAMILY	46565	Chaperone J-domain	coord: 321..454
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 129..227 e-value: 2.9E-8 score: 34.1
IPR044618	NAD(P)H-quinone oxidoreductase subunit T-like	PANTHER	PTHR45283	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC	coord: 297..534
IPR018253	DnaJ domain, conserved site	PROSITE	PS00636	DNAJ_1	coord: 435..454

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G031570.1	CmoCh04G031570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome