CmoCh04G030980 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G030980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRNase H domain-containing protein
LocationCmo_Chr04: 21566437 .. 21567902 (-)
RNA-Seq ExpressionCmoCh04G030980
SyntenyCmoCh04G030980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACGGAAGAAGGACGAGAAGAAGAGGTTACCGGATCATCCAGAGTAGATGTGGACATGAAGAGCGAGAATGAAGACGGCATAGAGGATGAAGAAGATGAGAGTATGAATGACTACAGCTTTGCCGTTAGTCTTCATACTCCCGAACTCAAACTGCCGATTATTCCCCGGGAACTGGAACAGAAGCCCTGGCGAAAGCAGCACGAACAGAACAACTCCGATCACCACTGGCGCCCAATCCGACATCGTGTCAGAGATATCGTAATAATTTACTAAACCAGAAAAAAAAAATCAAAAGAGGAACTCAAAGTAGCAGAGAGCTTCGGCGAAAAAAGCGAGAGAAAAAGTGGCTTTGCAGAAACGCGATGAAGATGATGAAGAAGAAGAGAAATGGAATTCAACGGAGTTCCACCTTTTCTTTTTCCTCTCTCTCTCTCCGCATCGAAACGAGAAGTAACGCTTTGCTTCATGATTCGAAAATTATGGGAATCCGAGAAGTTATTGTTAATTACGAGAATGACACTAGCTTAGTGGCAATGCTTACTGAACTAGGGAAGTTTATTGTCTGCAGGCGGTAGTGGCTAATTACTTTGTAATCGTTCATGAGAGCCCATTAGTTAAGTGCTAAATGGGCCCAGTGGGCCATATTTGGATGACGACGTGGGCCAGACCATGGACGGGCTCGGCGGTCGAATAAGCGGGAAGGGAAAAAGGGTGGTCGAGAAACAATGGTGGATTTACGTGCAATATGCTCTCGCTTTTTTTATTATTATTATTATTTTTTTACCAATAATTGTATTAAAAAAAAAAAAAAGAGAGAAGAATTATATTGAAAAATGGTTGATATAAATAATATAAAAACAAAATAATAACAGTCGAAAAATTAGCGATATAACCATTTATATATATTTTTTCAAATAGTACACAAATTTATTTCATTCATAAAATGAGTTCATGTTAATGTGAACGCTTTTTGCTTGAGAACGAACCAATATTGATTTAAACTCTCTGTTCAGTTTCTCTGGAATTTTATGTAATGGATTATTTTTCAGAAAAAAATTTAAAGAAATTTATTATTATTTATTTATTTAATTCAAAGAGGTTCTTATTTATAAAACATTACGGTCTCCCCTTCTGTATTAATAAATCTTAATTTGAACTTTTTTTTTTTTTTTATGACAAAGAAAGGGTTTAAAAAGATGGCTTAGTTTAATTTCGCCCTTAAATATTAGGTTATTTACTAAAGAACCATATGTGATAATGCGCATTATATTAACGAAAGAAATTAACGCCAAAAAAAAAAAAAAAAAAAAAGAATAAAGAAAGAAAGAGAAGAAATCGCCAAGAAGTGCTGTGCTGGTCGCATTTGGGCATATAGCTTGGCGTTGTAGACTGGAGAGGAGAAACGTTCAGCCACACGACATTGTGAGATTCCATTCCGGTCCTCGATTTCGCAATTCTAG

mRNA sequence

ATGAAAACGGAAGAAGGACGAGAAGAAGAGGTTACCGGATCATCCAGAGTAGATGTGGACATGAAGAGCGAGAATGAAGACGGCATAGAGGATGAAGAAGATGAGAGTATGAATGACTACAGCTTTGCCGTTAGTCTTCATACTCCCGAACTCAAACTGCCGATTATTCCCCGGGAACTGGAACAGAAGCCCTGGCGAAAGCAGCACGAACAGAACAACTCCGATCACCACTGGCGCCCAATCCGACATCGTGTCAGAGATATCACTGGAGAGGAGAAACGTTCAGCCACACGACATTGTGAGATTCCATTCCGGTCCTCGATTTCGCAATTCTAG

Coding sequence (CDS)

ATGAAAACGGAAGAAGGACGAGAAGAAGAGGTTACCGGATCATCCAGAGTAGATGTGGACATGAAGAGCGAGAATGAAGACGGCATAGAGGATGAAGAAGATGAGAGTATGAATGACTACAGCTTTGCCGTTAGTCTTCATACTCCCGAACTCAAACTGCCGATTATTCCCCGGGAACTGGAACAGAAGCCCTGGCGAAAGCAGCACGAACAGAACAACTCCGATCACCACTGGCGCCCAATCCGACATCGTGTCAGAGATATCACTGGAGAGGAGAAACGTTCAGCCACACGACATTGTGAGATTCCATTCCGGTCCTCGATTTCGCAATTCTAG

Protein sequence

MKTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRDITGEEKRSATRHCEIPFRSSISQF
Homology
BLAST of CmoCh04G030980 vs. ExPASy TrEMBL
Match: A0A5D3BWV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00140 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.9e-20
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 0

Query: 1   MKTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPREL 60
           +K EE +EEEVTGS+ VDVDM+SENE+ IEDEEDES+   SF+V LH PELKL IIP +L
Sbjct: 46  LKREERQEEEVTGSASVDVDMESENENSIEDEEDESVYSNSFSVGLHAPELKLTIIPGKL 105

Query: 61  EQKPWRKQHEQNNSDHHWRPIRHRVRDITGE 92
           +QKP RKQ+E+ NSD H  PIRH   DI  E
Sbjct: 106 KQKPGRKQYEEYNSDDHGCPIRHSFTDIVKE 136

BLAST of CmoCh04G030980 vs. ExPASy TrEMBL
Match: A0A0A0LT04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406100 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.4e-12
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 21 MKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRP 80
          M+SENED IEDEEDES+   SF++ LH P+LKL II R+L+QK  RKQ+E+ NSD H  P
Sbjct: 1  MESENEDSIEDEEDESVYSNSFSIGLHAPKLKLAIITRKLKQKARRKQYEEYNSDDHRCP 60

Query: 81 IRHRVRDITGE 92
          IRH  RD   +
Sbjct: 61 IRHSFRDTVNQ 71

BLAST of CmoCh04G030980 vs. ExPASy TrEMBL
Match: A0A445GEX9 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_042794 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.7e-09
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 12  TGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQ 71
           TGS+ VD+D   E+EDG+E EEDE +++  FAV LH  ELKL  +PR+ E++P  +QHEQ
Sbjct: 63  TGSAGVDMDFNGEDEDGVEREEDERVDENGFAVGLHATELKLLPVPRKGEKQPRLEQHEQ 122

Query: 72  NNSDHHWRPIRHRVRD 88
           N  D +  PI H + D
Sbjct: 123 NYPDQNRCPISHFLTD 138

BLAST of CmoCh04G030980 vs. ExPASy TrEMBL
Match: A0A0B2R840 (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_040169 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.7e-09
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 12 TGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQ 71
          TGS+ VD+D   E+EDG+E EEDE +++  FAV LH  ELKL  +PR+ E++P  +QHEQ
Sbjct: 8  TGSAGVDMDFNGEDEDGVEREEDERVDENGFAVGLHATELKLLPVPRKGEKQPRLEQHEQ 67

Query: 72 NNSDHHWRPIRHRVRD 88
          N  D +  PI H + D
Sbjct: 68 NYPDQNRCPISHFLTD 83

BLAST of CmoCh04G030980 vs. ExPASy TrEMBL
Match: A0A5A7QQI9 (Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_24622 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 12  TGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQ 71
           TGS+ VDVD+  E+E+ +E EEDE ++  S AV LH  EL+L ++PR L+Q+P  +Q+E+
Sbjct: 75  TGSAGVDVDVDGEDENSVEGEEDERVDGNSLAVGLHASELQLAVVPRYLKQQPRLQQYEE 134

Query: 72  NNSDHHWRPIRH 84
            NSD H  P+ H
Sbjct: 135 YNSDEHRAPVSH 146

BLAST of CmoCh04G030980 vs. NCBI nr
Match: KAG6602686.1 (Actin-related protein 2/3 complex subunit 2A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0

Query: 2   KTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELE 61
           KTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSF VSLHTPELKLPIIPRELE
Sbjct: 103 KTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSFTVSLHTPELKLPIIPRELE 162

Query: 62  QKPWRKQHEQNNSDHHWRPIRHRVRDIT 90
           QKPWRKQHEQNNSDHHWRPIRHRVRDI+
Sbjct: 163 QKPWRKQHEQNNSDHHWRPIRHRVRDIS 190

BLAST of CmoCh04G030980 vs. NCBI nr
Match: KAA0056546.1 (hypothetical protein E6C27_scaffold288G00480 [Cucumis melo var. makuwa] >TYK02716.1 hypothetical protein E5676_scaffold1154G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-19
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 0

Query: 1   MKTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPREL 60
           +K EE +EEEVTGS+ VDVDM+SENE+ IEDEEDES+   SF+V LH PELKL IIP +L
Sbjct: 46  LKREERQEEEVTGSASVDVDMESENENSIEDEEDESVYSNSFSVGLHAPELKLTIIPGKL 105

Query: 61  EQKPWRKQHEQNNSDHHWRPIRHRVRDITGE 92
           +QKP RKQ+E+ NSD H  PIRH   DI  E
Sbjct: 106 KQKPGRKQYEEYNSDDHGCPIRHSFTDIVKE 136

BLAST of CmoCh04G030980 vs. NCBI nr
Match: KAG6578364.1 (hypothetical protein SDJN03_22812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-14
Identity = 45/77 (58.44%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 11  VTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHE 70
           V   + +DVD +SENEDG++D+E+E +N    +V LHTP+LKL IIPR+LEQKPWR+Q+E
Sbjct: 60  VIAIASIDVDTESENEDGVKDKENERVNGDGLSVGLHTPKLKLSIIPRKLEQKPWREQYE 119

Query: 71  QNNSDHHWRPIRHRVRD 88
           Q NSDH+  PIRH   D
Sbjct: 120 QYNSDHYRCPIRHPFPD 136

BLAST of CmoCh04G030980 vs. NCBI nr
Match: KAE8652261.1 (hypothetical protein Csa_022581 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 0

Query: 17  VDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDH 76
           VDVDM+SENED IEDEEDES+   SF++ LH P+LKL II R+L+QK  RKQ+E+ NSD 
Sbjct: 66  VDVDMESENEDSIEDEEDESVYSNSFSIGLHAPKLKLAIITRKLKQKARRKQYEEYNSDD 125

Query: 77  HWRPIRHRVRDITGE 92
           H  PIRH  RD   +
Sbjct: 126 HRCPIRHSFRDTVNQ 140

BLAST of CmoCh04G030980 vs. NCBI nr
Match: KAG5111059.1 (hypothetical protein JHK82_040282 [Glycine max])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 0

Query: 13 GSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQN 72
          GS+ VD+D   E+ED +E EEDE +++  F V LH  ELKL  IPR+ E++ W +QHEQN
Sbjct: 9  GSAGVDMDFNGEDEDIVEREEDEHVDENGFVVGLHATELKLLPIPRKGEKQHWLEQHEQN 68

Query: 73 NSDHHWRPIRHRVRD 88
          + D HW PI H + D
Sbjct: 69 HPDQHWCPITHFLSD 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BWV44.9e-2064.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LT048.4e-1259.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406100 PE=4 SV=1[more]
A0A445GEX98.7e-0950.00Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_042794 PE=4 SV=1[more]
A0A0B2R8408.7e-0950.00Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_040169 PE=4 SV=1[more]
A0A5A7QQI91.1e-0848.61Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_24622 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6602686.11.2e-3997.73Actin-related protein 2/3 complex subunit 2A, partial [Cucurbita argyrosperma su... [more]
KAA0056546.11.0e-1964.84hypothetical protein E6C27_scaffold288G00480 [Cucumis melo var. makuwa] >TYK0271... [more]
KAG6578364.11.3e-1458.44hypothetical protein SDJN03_22812, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652261.11.4e-1361.33hypothetical protein Csa_022581 [Cucumis sativus][more]
KAG5111059.11.2e-0950.67hypothetical protein JHK82_040282 [Glycine max][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G030980.1CmoCh04G030980.1mRNA