CmoCh04G029320 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTAGGTTTAGGGTAAAAAATGAATAAGCTGAAGAATGATGATCTTATGATTGATTTAGTTATGTTTCTACCGAATCCTCCATTCATATCTCTGTTTGTGCAGCATCGTAGTAAGGAATACTTGGCAGGATTTTGGTTAATACATTGTGGAGGATATGGATTGTTCAAAGAGCTTTGAGCTATCTAAGGTGCAGTTAGAGATGATCCATAATGAACCAGATGGTTTTATCCATGAACGTAGCCATTCCAATTCTTCCCGTACCTCGGATTTGTCACGAGACTCAGCTGTTAGCAGCATTTTCCAAATTGATTCTCCTCTTCAGCCAAAACTAGATGCTGACTCTACTAGAATCCATAGTTCATCAAGAGGTTCTCCTCAGATTCGATTATCCGGGGTGCTCGAGAACCATGATCCAAACCGAATACCGTTGTCGATCTTCTCTAGTAAACCATCAAGTCCTATGGAATGGAGCACAGCTTCAAATGAATCATTGTTCAGCATTCATGTGGGAAACAACAGCTTCTCAAGGGAGCAGTTCAATTTTTATACCAAGTCTGGAGAATTGACGAATAACACTAATTCACCCCAGAATCTATCCTCCTCGCCTCCTTTTGTTGATCCAGCAAGAGTGGAGAGTAAAACTGAAATCGTGGTGAATGTCTTCCCTGAACAGGCAGCATCAACTGGAGCTCAAATTCCAGCCATCTCGACTCAGAGTGTAACAAATCGTAGAAAAGAAGTCATAATATCTGTGGATGATCATCGAAGCCGCCCGAGCGAATCGAACGACAGCATGAACAGCTCTCGTTCATTTCAGTTCCCTCTGTAAGTAATCCTACATCATAGACATAATGCTTGAAATCTGAAAGCTGAAACTGAGACATTGTGGCTGTGAATTCTGTGCTTTTTGTTTGATCAGATTGGGAGGTGAAGGTGCAACGCCAAAATCAAACAGATCCGTCTCAACAGACTCATGTACACAACAAAAACAACACCAGCCAGGAACGAAATCGACGAAGCTGTCGCTGGAGCATCAATCTGCATCTAATGAAACTACCTCATCGTCTCGGACTATGAATTTCGGTTCGGGTTGGTTTTCCTGCCTCTCTTGGTGTCGATGTCGGTGATGATGACGACAACGACAAATCTACTACTTGTTCTACTCACATCTCGTCCTATTCAGCTCAGAGAAGCTTCAGCTGGAGGTGCTAACTTTACATTATAGCTAATTAGTTCTCTCAAATGGGAAGAACATGGACTGATCCTACAAAGGGGAATCAGTTATCACTGTAATAAACTTTTTTCTTTTTGTTTTGTTTTCAAGATCTTCATCTGAAGCATTCGAATAGTG TCTAGGTTTAGGGTAAAAAATGAATAAGCTGAAGAATGATGATCTTATGATTGATTTAGTTATGTTTCTACCGAATCCTCCATTCATATCTCTGTTTGTGCAGCATCGTAGTAAGGAATACTTGGCAGGATTTTGGTTAATACATTGTGGAGGATATGGATTGTTCAAAGAGCTTTGAGCTATCTAAGGTGCAGTTAGAGATGATCCATAATGAACCAGATGGTTTTATCCATGAACGTAGCCATTCCAATTCTTCCCGTACCTCGGATTTGTCACGAGACTCAGCTGTTAGCAGCATTTTCCAAATTGATTCTCCTCTTCAGCCAAAACTAGATGCTGACTCTACTAGAATCCATAGTTCATCAAGAGGTTCTCCTCAGATTCGATTATCCGGGGTGCTCGAGAACCATGATCCAAACCGAATACCGTTGTCGATCTTCTCTAGTAAACCATCAAGTCCTATGGAATGGAGCACAGCTTCAAATGAATCATTGTTCAGCATTCATGTGGGAAACAACAGCTTCTCAAGGGAGCAGTTCAATTTTTATACCAAGTCTGGAGAATTGACGAATAACACTAATTCACCCCAGAATCTATCCTCCTCGCCTCCTTTTGTTGATCCAGCAAGAGTGGAGAGTAAAACTGAAATCGTGGTGAATGTCTTCCCTGAACAGGCAGCATCAACTGGAGCTCAAATTCCAGCCATCTCGACTCAGAGTGTAACAAATCGTAGAAAAGAAGTCATAATATCTGTGGATGATCATCGAAGCCGCCCGAGCGAATCGAACGACAGCATGAACAGCTCTCGTTCATTTCAGTTCCCTCTATTGGGAGGTGAAGGTGCAACGCCAAAATCAAACAGATCCGTCTCAACAGACTCATGTACACAACAAAAACAACACCAGCCAGGAACGAAATCGACGAAGCTGTCGCTGGAGCATCAATCTGCATCTAATGAAACTACCTCATCGTCTCGGACTATGAATTTCGGTTCGGGTTGGTTTTCCTGCCTCTCTTGGTGTCGATGTCGGTGATGATGACGACAACGACAAATCTACTACTTGTTCTACTCACATCTCGTCCTATTCAGCTCAGAGAAGCTTCAGCTGGAGGTGCTAACTTTACATTATAGCTAATTAGTTCTCTCAAATGGGAAGAACATGGACTGATCCTACAAAGGGGAATCAGTTATCACTGTAATAAACTTTTTTCTTTTTGTTTTGTTTTCAAGATCTTCATCTGAAGCATTCGAATAGTG ATGGATTGTTCAAAGAGCTTTGAGCTATCTAAGGTGCAGTTAGAGATGATCCATAATGAACCAGATGGTTTTATCCATGAACGTAGCCATTCCAATTCTTCCCGTACCTCGGATTTGTCACGAGACTCAGCTGTTAGCAGCATTTTCCAAATTGATTCTCCTCTTCAGCCAAAACTAGATGCTGACTCTACTAGAATCCATAGTTCATCAAGAGGTTCTCCTCAGATTCGATTATCCGGGGTGCTCGAGAACCATGATCCAAACCGAATACCGTTGTCGATCTTCTCTAGTAAACCATCAAGTCCTATGGAATGGAGCACAGCTTCAAATGAATCATTGTTCAGCATTCATGTGGGAAACAACAGCTTCTCAAGGGAGCAGTTCAATTTTTATACCAAGTCTGGAGAATTGACGAATAACACTAATTCACCCCAGAATCTATCCTCCTCGCCTCCTTTTGTTGATCCAGCAAGAGTGGAGAGTAAAACTGAAATCGTGGTGAATGTCTTCCCTGAACAGGCAGCATCAACTGGAGCTCAAATTCCAGCCATCTCGACTCAGAGTGTAACAAATCGTAGAAAAGAAGTCATAATATCTGTGGATGATCATCGAAGCCGCCCGAGCGAATCGAACGACAGCATGAACAGCTCTCGTTCATTTCAGTTCCCTCTATTGGGAGGTGAAGGTGCAACGCCAAAATCAAACAGATCCGTCTCAACAGACTCATGTACACAACAAAAACAACACCAGCCAGGAACGAAATCGACGAAGCTGTCGCTGGAGCATCAATCTGCATCTAATGAAACTACCTCATCGTCTCGGACTATGAATTTCGGTTCGGGTTGGTTTTCCTGCCTCTCTTGGTGTCGATGTCGGTGA MDCSKSFELSKVQLEMIHNEPDGFIHERSHSNSSRTSDLSRDSAVSSIFQIDSPLQPKLDADSTRIHSSSRGSPQIRLSGVLENHDPNRIPLSIFSSKPSSPMEWSTASNESLFSIHVGNNSFSREQFNFYTKSGELTNNTNSPQNLSSSPPFVDPARVESKTEIVVNVFPEQAASTGAQIPAISTQSVTNRRKEVIISVDDHRSRPSESNDSMNSSRSFQFPLLGGEGATPKSNRSVSTDSCTQQKQHQPGTKSTKLSLEHQSASNETTSSSRTMNFGSGWFSCLSWCRCR Homology
BLAST of CmoCh04G029320 vs. ExPASy TrEMBL
Match: A0A6J1HH60 (uncharacterized protein LOC111462894 OS=Cucurbita moschata OX=3662 GN=LOC111462894 PE=4 SV=1) HSP 1 Score: 562.4 bits (1448), Expect = 1.1e-156 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
BLAST of CmoCh04G029320 vs. ExPASy TrEMBL
Match: A0A6J1JUX6 (uncharacterized protein LOC111487727 OS=Cucurbita maxima OX=3661 GN=LOC111487727 PE=4 SV=1) HSP 1 Score: 545.8 bits (1405), Expect = 1.1e-151 Identity = 286/293 (97.61%), Postives = 289/293 (98.63%), Query Frame = 0
BLAST of CmoCh04G029320 vs. ExPASy TrEMBL
Match: A0A6J1BWD8 (uncharacterized protein LOC111006315 OS=Momordica charantia OX=3673 GN=LOC111006315 PE=4 SV=1) HSP 1 Score: 302.8 bits (774), Expect = 1.6e-78 Identity = 194/313 (61.98%), Postives = 214/313 (68.37%), Query Frame = 0
BLAST of CmoCh04G029320 vs. ExPASy TrEMBL
Match: A0A0A0KXK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G639470 PE=4 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 2.4e-74 Identity = 179/316 (56.65%), Postives = 217/316 (68.67%), Query Frame = 0
BLAST of CmoCh04G029320 vs. ExPASy TrEMBL
Match: A0A1S4E2F1 (uncharacterized protein LOC103498531 OS=Cucumis melo OX=3656 GN=LOC103498531 PE=4 SV=1) HSP 1 Score: 286.2 bits (731), Expect = 1.6e-73 Identity = 177/315 (56.19%), Postives = 213/315 (67.62%), Query Frame = 0
BLAST of CmoCh04G029320 vs. NCBI nr
Match: XP_022962469.1 (uncharacterized protein LOC111462894 [Cucurbita moschata] >XP_022962478.1 uncharacterized protein LOC111462894 [Cucurbita moschata]) HSP 1 Score: 562.4 bits (1448), Expect = 2.3e-156 Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
BLAST of CmoCh04G029320 vs. NCBI nr
Match: KAG6602531.1 (hypothetical protein SDJN03_07764, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033205.1 hypothetical protein SDJN02_07259, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 559.3 bits (1440), Expect = 2.0e-155 Identity = 291/292 (99.66%), Postives = 291/292 (99.66%), Query Frame = 0
BLAST of CmoCh04G029320 vs. NCBI nr
Match: XP_023551219.1 (uncharacterized protein LOC111809101 [Cucurbita pepo subsp. pepo] >XP_023551228.1 uncharacterized protein LOC111809101 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 550.1 bits (1416), Expect = 1.2e-152 Identity = 287/293 (97.95%), Postives = 290/293 (98.98%), Query Frame = 0
BLAST of CmoCh04G029320 vs. NCBI nr
Match: XP_022991006.1 (uncharacterized protein LOC111487727 [Cucurbita maxima] >XP_022991008.1 uncharacterized protein LOC111487727 [Cucurbita maxima]) HSP 1 Score: 545.8 bits (1405), Expect = 2.2e-151 Identity = 286/293 (97.61%), Postives = 289/293 (98.63%), Query Frame = 0
BLAST of CmoCh04G029320 vs. NCBI nr
Match: XP_038890702.1 (uncharacterized protein LOC120080199 [Benincasa hispida]) HSP 1 Score: 309.7 bits (792), Expect = 2.7e-80 Identity = 190/316 (60.13%), Postives = 223/316 (70.57%), Query Frame = 0
BLAST of CmoCh04G029320 vs. TAIR 10
Match: AT2G03630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits to 126 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). ) HSP 1 Score: 60.1 bits (144), Expect = 3.5e-09 Identity = 68/233 (29.18%), Postives = 103/233 (44.21%), Query Frame = 0
BLAST of CmoCh04G029320 vs. TAIR 10
Match: AT2G03630.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 87 Blast hits to 87 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 58.5 bits (140), Expect = 1.0e-08 Identity = 54/164 (32.93%), Postives = 80/164 (48.78%), Query Frame = 0
BLAST of CmoCh04G029320 vs. TAIR 10
Match: AT3G02125.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39200.1); Has 2247 Blast hits to 1434 proteins in 202 species: Archae - 4; Bacteria - 111; Metazoa - 942; Fungi - 239; Plants - 140; Viruses - 37; Other Eukaryotes - 774 (source: NCBI BLink). ) HSP 1 Score: 56.6 bits (135), Expect = 3.8e-08 Identity = 63/187 (33.69%), Postives = 84/187 (44.92%), Query Frame = 0
BLAST of CmoCh04G029320 vs. TAIR 10
Match: AT1G74220.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03630.1); Has 383 Blast hits to 347 proteins in 86 species: Archae - 0; Bacteria - 17; Metazoa - 87; Fungi - 65; Plants - 76; Viruses - 2; Other Eukaryotes - 136 (source: NCBI BLink). ) HSP 1 Score: 53.1 bits (126), Expect = 4.3e-07 Identity = 72/238 (30.25%), Postives = 100/238 (42.02%), Query Frame = 0
BLAST of CmoCh04G029320 vs. TAIR 10
Match: AT5G39200.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39140.1); Has 65 Blast hits to 65 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 1.6e-06 Identity = 63/211 (29.86%), Postives = 99/211 (46.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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