CmoCh04G029020 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G029020
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CASP-like protein
Location	Cmo_Chr04: 20633997 .. 20634785 (+)
RNA-Seq Expression	CmoCh04G029020
Synteny	CmoCh04G029020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCAACTATGAGCGAGTCAAGTGAGCTAAAGAGCTCCAAAACCAAACCAGGGGTGAACCGAGGTTTGTCAATACTCGACTTCATCCTAAGGTTGGCTGCCATTGTTGGAACATTAGGAAGTGCAATAGCTATGGGAACCACCAACCAGACTCTTCCATTTGTCACACAGTTTATTCAGTTCAGAGCTGAGTATAATGATATCCCTATGTTTACGTATGTCATAAATAACTACTTTATATTTCAAAGACTGACTCAATGATTTACTAACCTCTTTTGGGTGTTTGAGCAGCTTCTTTGTTGTAGCCAACGCCATTGTAAGTGGCTACTTGGTTCTTTCTCTGCCTTTTTCTATATTCCACATCCTGAGGAACAGAGCGCATGGCACAAGGGTTCTGCTGGTCTTCTTAGATGGGGTACTTCCTTTTATCTGTATGAACTTCAATCAGCTAAAGAAAACCACCAATCTAGTATGAAATATACAAGAAAACTTAGGCAGTAATTAAAACAAAGAAAGAAAAGTGGACCATGCTCGCTTACTTGTAATTTGTACAATTGTGAACAGGGAATGATGGCTCTTTTGACATCTGGGGCATCTGCAGCGGCGGCCATTGTATACTTAGCACACAAAGGAAATGCCAAGACAAATTGGCTAGCCGTCTGCCAACAGTTTAACTCTTTCTGTGAGCGAATCTCAGGCTCTTTGATCGGATCTTTTGCAGCAATTATTCTGTTTTTAGTTATGATCTTCCTGTCCGGTGTTGCACTGTCTCGTCGTCGACAGTAG

mRNA sequence

ATGAAGGCAACTATGAGCGAGTCAAGTGAGCTAAAGAGCTCCAAAACCAAACCAGGGGTGAACCGAGGTTTGTCAATACTCGACTTCATCCTAAGGTTGGCTGCCATTGTTGGAACATTAGGAAGTGCAATAGCTATGGGAACCACCAACCAGACTCTTCCATTTGTCACACAGTTTATTCAGTTCAGAGCTGAGTATAATGATATCCCTATGTTTACCTTCTTTGTTGTAGCCAACGCCATTGTAAGTGGCTACTTGGTTCTTTCTCTGCCTTTTTCTATATTCCACATCCTGAGGAACAGAGCGCATGGCACAAGGGTTCTGCTGGTCTTCTTAGATGGGGGAATGATGGCTCTTTTGACATCTGGGGCATCTGCAGCGGCGGCCATTGTATACTTAGCACACAAAGGAAATGCCAAGACAAATTGGCTAGCCGTCTGCCAACAGTTTAACTCTTTCTGTGAGCGAATCTCAGGCTCTTTGATCGGATCTTTTGCAGCAATTATTCTGTTTTTAGTTATGATCTTCCTGTCCGGTGTTGCACTGTCTCGTCGTCGACAGTAG

Coding sequence (CDS)

ATGAAGGCAACTATGAGCGAGTCAAGTGAGCTAAAGAGCTCCAAAACCAAACCAGGGGTGAACCGAGGTTTGTCAATACTCGACTTCATCCTAAGGTTGGCTGCCATTGTTGGAACATTAGGAAGTGCAATAGCTATGGGAACCACCAACCAGACTCTTCCATTTGTCACACAGTTTATTCAGTTCAGAGCTGAGTATAATGATATCCCTATGTTTACCTTCTTTGTTGTAGCCAACGCCATTGTAAGTGGCTACTTGGTTCTTTCTCTGCCTTTTTCTATATTCCACATCCTGAGGAACAGAGCGCATGGCACAAGGGTTCTGCTGGTCTTCTTAGATGGGGGAATGATGGCTCTTTTGACATCTGGGGCATCTGCAGCGGCGGCCATTGTATACTTAGCACACAAAGGAAATGCCAAGACAAATTGGCTAGCCGTCTGCCAACAGTTTAACTCTTTCTGTGAGCGAATCTCAGGCTCTTTGATCGGATCTTTTGCAGCAATTATTCTGTTTTTAGTTATGATCTTCCTGTCCGGTGTTGCACTGTCTCGTCGTCGACAGTAG

Protein sequence

MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFIQFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALLTSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGVALSRRRQ

Homology

[Close]

BLAST of CmoCh04G029020 vs. ExPASy Swiss-Prot
Match: A7PMY7 (Casparian strip membrane protein 3 OS=Vitis vinifera OX=29760 GN=VIT_14s0108g01050 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.4e-64
Identity = 130/185 (70.27%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 1   MKATMSESSE-LKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQF 60
           MKA   E  E  K+S  + GVNRG+SILDFILRL  I+GTLGSAIAMGTTN+TLPF TQF
Sbjct: 1   MKAGALELGEGSKTSIPRGGVNRGISILDFILRLITIIGTLGSAIAMGTTNETLPFFTQF 60

Query: 61  IQFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMAL 120
            QFRAEY+D+P FTFFV+AN+IVSGYLVLSLP SI HI+R+ A  +R++L+F D  M+AL
Sbjct: 61  TQFRAEYDDLPTFTFFVIANSIVSGYLVLSLPMSILHIVRSGARASRIVLIFFDTAMLAL 120

Query: 121 LTSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSG 180
           LT+ ASAA+AIVYLAHKGNA+ NW A+CQQF SFCERISGSLIGSF  IILF++++ LS 
Sbjct: 121 LTAAASAASAIVYLAHKGNAQANWFAICQQFKSFCERISGSLIGSFGGIILFILLVLLSA 180

Query: 181 VALSR 185
           VALSR
Sbjct: 181 VALSR 185

[Close]

BLAST of CmoCh04G029020 vs. ExPASy Swiss-Prot
Match: B9I534 (Casparian strip membrane protein 6 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_569472 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 9.0e-64
Identity = 124/186 (66.67%), Postives = 155/186 (83.33%), Query Frame = 0


Query: 1   MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 60
           MKA   E  E KSS  K  VNRG++ILDFILR+ A +GTLGSAI+M TTN+TLPF TQFI
Sbjct: 1   MKAGPIELGEGKSSAPKAAVNRGVAILDFILRILAFIGTLGSAISMATTNETLPFFTQFI 60

Query: 61  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 120
           +FRAEY+D+P FTFFVVAN +VS YL+ SLPFSIF+I+R++A  +R+LL+ LD  M+ LL
Sbjct: 61  RFRAEYDDLPTFTFFVVANGVVSAYLLFSLPFSIFNIVRSKAQNSRILLIILDTAMLGLL 120

Query: 121 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 180
           ++GASAAAAIVYLAH+GN +TNW A+CQQFNSFCERISGSLIGSF  +++F+++I LS V
Sbjct: 121 SAGASAAAAIVYLAHQGNVRTNWSAICQQFNSFCERISGSLIGSFIGVVVFILLISLSAV 180

Query: 181 ALSRRR 187
           ALSR +
Sbjct: 181 ALSRHK 186

[Close]

BLAST of CmoCh04G029020 vs. ExPASy Swiss-Prot
Match: A2YAZ1 (Casparian strip membrane protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_22263 PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.9e-62
Identity = 119/179 (66.48%), Postives = 152/179 (84.92%), Query Frame = 0


Query: 7   ESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFIQFRAEY 66
           E  E   +    GV++G+SILD ILR  AI+GTL SAIAMGTTNQTLPF TQFI+F+A+Y
Sbjct: 6   EHGETSKAPLSRGVSKGVSILDVILRFVAIIGTLASAIAMGTTNQTLPFFTQFIRFKAQY 65

Query: 67  NDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALLTSGASA 126
           +D+P  TFFVVAN+IVS YL+LSLP SI H++R+RA  +R++L+F D  M+AL+T+GASA
Sbjct: 66  SDLPTLTFFVVANSIVSAYLILSLPLSIVHVIRSRAKYSRLILIFFDAAMLALVTAGASA 125

Query: 127 AAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGVALSRR 186
           AAAIVYLAHKGNA+ NWLA+CQQF+SFCERISGSLIGSFAA+++ +++IFLS +AL+RR
Sbjct: 126 AAAIVYLAHKGNARANWLAICQQFDSFCERISGSLIGSFAAMVVLVLLIFLSAIALARR 184

[Close]

BLAST of CmoCh04G029020 vs. ExPASy Swiss-Prot
Match: Q67X40 (Casparian strip membrane protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0231050 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.9e-62
Identity = 119/179 (66.48%), Postives = 152/179 (84.92%), Query Frame = 0


Query: 7   ESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFIQFRAEY 66
           E  E   +    GV++G+SILD ILR  AI+GTL SAIAMGTTNQTLPF TQFI+F+A+Y
Sbjct: 6   EHGETSKAPLSRGVSKGVSILDVILRFVAIIGTLASAIAMGTTNQTLPFFTQFIRFKAQY 65

Query: 67  NDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALLTSGASA 126
           +D+P  TFFVVAN+IVS YL+LSLP SI H++R+RA  +R++L+F D  M+AL+T+GASA
Sbjct: 66  SDLPTLTFFVVANSIVSAYLILSLPLSIVHVIRSRAKYSRLILIFFDAAMLALVTAGASA 125

Query: 127 AAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGVALSRR 186
           AAAIVYLAHKGNA+ NWLA+CQQF+SFCERISGSLIGSFAA+++ +++IFLS +AL+RR
Sbjct: 126 AAAIVYLAHKGNARANWLAICQQFDSFCERISGSLIGSFAAMVVLVLLIFLSAIALARR 184

[Close]

BLAST of CmoCh04G029020 vs. ExPASy Swiss-Prot
Match: P0DI44 (Casparian strip membrane protein 1 OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.9e-61
Identity = 116/173 (67.05%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 13  SSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFIQFRAEYNDIPMF 72
           S  TK GVNRG+SILD  +R+ AI+ TLGSAIAMGTTN+TLPF TQF++F+A+Y+D+P F
Sbjct: 12  SKTTKSGVNRGMSILDLFIRIIAIIATLGSAIAMGTTNETLPFFTQFVRFKAKYSDLPTF 71

Query: 73  TFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALLTSGASAAAAIVY 132
           TFFVVANAIVS YLVLSL  SI+HI+R+RA  TR+ L+F D  M+ LLT GASA+AAIVY
Sbjct: 72  TFFVVANAIVSAYLVLSLGLSIYHIMRSRAQATRIALIFFDAAMLGLLTGGASASAAIVY 131

Query: 133 LAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGVALSRR 186
           LAHKGN KTNW  +CQQ++SFC R SGSL+GSFA  +L +++IFLS +ALSR+
Sbjct: 132 LAHKGNRKTNWFPICQQYDSFCHRTSGSLVGSFAGSVLIILLIFLSAIALSRQ 184

[Close]

BLAST of CmoCh04G029020 vs. ExPASy TrEMBL
Match: A0A6J1GRF2 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111456446 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 7.3e-93
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 60
           MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI
Sbjct: 18  MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 77

Query: 61  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 120
           QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL
Sbjct: 78  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 137

Query: 121 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 180
           TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV
Sbjct: 138 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 197

Query: 181 ALSRRRQ 188
           ALSRRRQ
Sbjct: 198 ALSRRRQ 204

[Close]

BLAST of CmoCh04G029020 vs. ExPASy TrEMBL
Match: A0A6J1JTR2 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111487433 PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.1e-92
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 60
           MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI
Sbjct: 18  MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 77

Query: 61  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 120
           QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL
Sbjct: 78  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 137

Query: 121 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 180
           TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV
Sbjct: 138 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 197

Query: 181 ALSRRRQ 188
           ALS RR+
Sbjct: 198 ALSHRRR 204

[Close]

BLAST of CmoCh04G029020 vs. ExPASy TrEMBL
Match: A0A6J1BYA1 (CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111006680 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.2e-80
Identity = 159/185 (85.95%), Postives = 175/185 (94.59%), Query Frame = 0


Query: 1   MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 60
           MKA + ES ELKSSK+KPG+NRGLSILDFILRLAAIVGTLG+AIAMGTTNQTLPF TQFI
Sbjct: 1   MKAAVGESGELKSSKSKPGMNRGLSILDFILRLAAIVGTLGNAIAMGTTNQTLPFSTQFI 60

Query: 61  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 120
           +FRAEYND+PMFTFFVVANAIV+GYLVLSLP SIFHI+R+RAHGTRVLLVFL  GMMALL
Sbjct: 61  RFRAEYNDLPMFTFFVVANAIVTGYLVLSLPLSIFHIVRSRAHGTRVLLVFLGAGMMALL 120

Query: 121 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 180
           T+GASAAAAIVYLAHKGN++TNWL++CQQFNSFCERISGSLIGSFA I+LF+VMIFL G 
Sbjct: 121 TAGASAAAAIVYLAHKGNSRTNWLSICQQFNSFCERISGSLIGSFAGIVLFMVMIFLLGA 180

Query: 181 ALSRR 186
           ALSRR
Sbjct: 181 ALSRR 185

[Close]

BLAST of CmoCh04G029020 vs. ExPASy TrEMBL
Match: A0A1S3C9W9 (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498495 PE=3 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.5e-79
Identity = 161/186 (86.56%), Postives = 168/186 (90.32%), Query Frame = 0


Query: 1   MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 60
           MKA   ESSELKSSK KPGVNRGLSI DFILRLAAIVG LGSAIAMGTT QTLPF TQFI
Sbjct: 28  MKAVTGESSELKSSKLKPGVNRGLSIFDFILRLAAIVGALGSAIAMGTTTQTLPFATQFI 87

Query: 61  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 120
           QFRAEYND+PMFTFFVVA AIVSGYLVLSLP SIFHILR+RA  TRV+LVFLD GMMALL
Sbjct: 88  QFRAEYNDLPMFTFFVVACAIVSGYLVLSLPLSIFHILRSRARATRVVLVFLDAGMMALL 147

Query: 121 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 180
           TSGASAAAAIVYLAHKGN KTNWLA+CQQFNSFCER SGSLIGSF AI+L ++MIFLSG 
Sbjct: 148 TSGASAAAAIVYLAHKGNGKTNWLAICQQFNSFCERTSGSLIGSFVAIVLLMIMIFLSGA 207

Query: 181 ALSRRR 187
           ALSRRR
Sbjct: 208 ALSRRR 213

[Close]

BLAST of CmoCh04G029020 vs. ExPASy TrEMBL
Match: A0A0A0KSC5 (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G636650 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 160/185 (86.49%), Postives = 168/185 (90.81%), Query Frame = 0


Query: 1   MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 60
           MKA  S+SSELKSSK KPGVNRGLSI DFILRLAAIVG LGSAIAMGTT QTLPF TQFI
Sbjct: 1   MKAVASDSSELKSSKLKPGVNRGLSIFDFILRLAAIVGALGSAIAMGTTTQTLPFATQFI 60

Query: 61  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 120
           QFRAEYND+PMFTFFVVA AIVSGYLVLSLP SIFHILR+RA  TRV+LVFLD GMMALL
Sbjct: 61  QFRAEYNDLPMFTFFVVACAIVSGYLVLSLPLSIFHILRSRARATRVVLVFLDAGMMALL 120

Query: 121 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 180
           TSGASAAAAIVYLAHKGN KTNWLA+CQQFNSFCER SGSLIGSF AI+L ++MIFLSG 
Sbjct: 121 TSGASAAAAIVYLAHKGNGKTNWLAICQQFNSFCERTSGSLIGSFVAIVLLMIMIFLSGA 180

Query: 181 ALSRR 186
           ALSRR
Sbjct: 181 ALSRR 185

[Close]

BLAST of CmoCh04G029020 vs. NCBI nr
Match: KAG6602505.1 (hypothetical protein SDJN03_07738, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 349.7 bits (896), Expect = 1.5e-92
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 60
           MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI
Sbjct: 1   MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 60

Query: 61  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 120
           QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL
Sbjct: 61  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 120

Query: 121 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 180
           TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV
Sbjct: 121 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 180

Query: 181 ALSRRRQ 188
           ALSRRRQ
Sbjct: 181 ALSRRRQ 187

[Close]

BLAST of CmoCh04G029020 vs. NCBI nr
Match: XP_022954075.1 (casparian strip membrane protein 1 [Cucurbita moschata])

HSP 1 Score: 349.7 bits (896), Expect = 1.5e-92
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 60
           MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI
Sbjct: 18  MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 77

Query: 61  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 120
           QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL
Sbjct: 78  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 137

Query: 121 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 180
           TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV
Sbjct: 138 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 197

Query: 181 ALSRRRQ 188
           ALSRRRQ
Sbjct: 198 ALSRRRQ 204

[Close]

BLAST of CmoCh04G029020 vs. NCBI nr
Match: KAG7033177.1 (hypothetical protein SDJN02_07231, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.4 bits (890), Expect = 7.5e-92
Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 60
           MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI
Sbjct: 18  MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 77

Query: 61  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 120
           QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL
Sbjct: 78  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 137

Query: 121 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 180
           TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIIL LVMIFLSGV
Sbjct: 138 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILLLVMIFLSGV 197

Query: 181 ALSRRRQ 188
           ALSRRRQ
Sbjct: 198 ALSRRRQ 204

[Close]

BLAST of CmoCh04G029020 vs. NCBI nr
Match: XP_022990598.1 (casparian strip membrane protein 1 [Cucurbita maxima])

HSP 1 Score: 346.3 bits (887), Expect = 1.7e-91
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 60
           MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI
Sbjct: 18  MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 77

Query: 61  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 120
           QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL
Sbjct: 78  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 137

Query: 121 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 180
           TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV
Sbjct: 138 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 197

Query: 181 ALSRRRQ 188
           ALS RR+
Sbjct: 198 ALSHRRR 204

[Close]

BLAST of CmoCh04G029020 vs. NCBI nr
Match: XP_023544467.1 (casparian strip membrane protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.1 bits (884), Expect = 3.7e-91
Identity = 185/187 (98.93%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 60
           MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI
Sbjct: 18  MKATMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFI 77

Query: 61  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 120
           QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL
Sbjct: 78  QFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALL 137

Query: 121 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 180
           TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV
Sbjct: 138 TSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGV 197

Query: 181 ALSRRRQ 188
           ALSR R+
Sbjct: 198 ALSRCRR 204

[Close]

BLAST of CmoCh04G029020 vs. TAIR 10
Match: AT5G15290.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 224.6 bits (571), Expect = 6.8e-59
Identity = 116/186 (62.37%), Postives = 146/186 (78.49%), Query Frame = 0


Query: 1   MKATMSESSELKSSKTKPG-VNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQF 60
           MK+  +E  E      K G ++R ++IL+FILR+ A   T+GSAI MGTT++TLPF TQF
Sbjct: 1   MKSGQAEIMETSKGIQKSGLMSRRIAILEFILRIVAFFNTIGSAILMGTTHETLPFFTQF 60

Query: 61  IQFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMAL 120
           I+F+AEYND+P  TFFVVANA+VSGYL+LSL  +  HI++ +   TR+LL+ LD  M+ L
Sbjct: 61  IRFQAEYNDLPALTFFVVANAVVSGYLILSLTLAFVHIVKRKTQNTRILLIILDVAMLGL 120

Query: 121 LTSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSG 180
           LTSGAS+AAAIVYLAH GN KTNW A+CQQFNSFCERISGSLIGSF AI+L +++I LS 
Sbjct: 121 LTSGASSAAAIVYLAHNGNNKTNWFAICQQFNSFCERISGSLIGSFIAIVLLILLILLSA 180

Query: 181 VALSRR 186
           +ALSRR
Sbjct: 181 IALSRR 186

[Close]

BLAST of CmoCh04G029020 vs. TAIR 10
Match: AT3G11550.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 191.0 bits (484), Expect = 8.4e-49
Identity = 94/166 (56.63%), Postives = 126/166 (75.90%), Query Frame = 0


Query: 19  GVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFIQFRAEYNDIPMFTFFVVA 78
           G NRGL+I DF+LRLAAIV  L +A  MGT+++TLPF TQF+QF A Y+D+P F FFV+A
Sbjct: 38  GYNRGLAIFDFLLRLAAIVAALAAAATMGTSDETLPFFTQFLQFEASYDDLPTFQFFVIA 97

Query: 79  NAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALLTSGASAAAAIVYLAHKGN 138
            A+V GYLVLSLP S+  ILR  A   R+LL+ LD G++AL T+ AS+AAAI YLAH GN
Sbjct: 98  MALVGGYLVLSLPISVVTILRPLATAPRLLLLVLDTGVLALNTAAASSAAAISYLAHSGN 157

Query: 139 AKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGVALSR 185
             TNWL +CQQF  FC++ SG+++ +F +++ F +++ +SGVAL R
Sbjct: 158 QNTNWLPICQQFGDFCQKSSGAVVSAFVSVVFFTILVVISGVALKR 203

[Close]

BLAST of CmoCh04G029020 vs. TAIR 10
Match: AT5G06200.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 189.1 bits (479), Expect = 3.2e-48
Identity = 96/166 (57.83%), Postives = 125/166 (75.30%), Query Frame = 0


Query: 19  GVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFIQFRAEYNDIPMFTFFVVA 78
           G  RGLSI DF+LRLAAIV  L +A  MGT+++TLPF TQF+QF A Y+D+P F FFVVA
Sbjct: 36  GYKRGLSIFDFLLRLAAIVAALAAAATMGTSDETLPFFTQFLQFEASYDDLPTFQFFVVA 95

Query: 79  NAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALLTSGASAAAAIVYLAHKGN 138
            AIV+GYLVLSLPFS+  I+R  A   R+LL+ LD   +AL T+ ASAAAAIVYLAH GN
Sbjct: 96  IAIVAGYLVLSLPFSVVTIVRPLAVAPRLLLLVLDTAALALDTAAASAAAAIVYLAHNGN 155

Query: 139 AKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGVALSR 185
             TNWL +CQQF  FC++ SG+++ +FA++    +++ +SGV+L R
Sbjct: 156 TNTNWLPICQQFGDFCQKTSGAVVSAFASVTFLAILVVISGVSLKR 201

[Close]

BLAST of CmoCh04G029020 vs. TAIR 10
Match: AT1G14160.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 187.6 bits (475), Expect = 9.2e-48
Identity = 95/181 (52.49%), Postives = 136/181 (75.14%), Query Frame = 0


Query: 4   TMSESSELKSSKTKPGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPFVTQFIQFR 63
           T   S +L + + K  +N+G+S+L F+LRL A+ GT+GSA+AMGTT++++  ++Q +  +
Sbjct: 28  TSRSSRKLITFEPKLVINKGISVLGFVLRLFAVFGTIGSALAMGTTHESVVSLSQLVLLK 87

Query: 64  AEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGGMMALLTSG 123
            +Y+D+P   FFVVANAI  GYLVLSLP SIFHI   +A  +R++L+ +D  M+AL++SG
Sbjct: 88  VKYSDLPTLMFFVVANAISGGYLVLSLPVSIFHIFSTQAKTSRIILLVVDTVMLALVSSG 147

Query: 124 ASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMIFLSGVALS 183
           ASAA A VYLAH+GN   NW  +CQQF+ FCERISGSLIGSF A+IL ++++  S ++LS
Sbjct: 148 ASAATATVYLAHEGNTTANWPPICQQFDGFCERISGSLIGSFCAVILLMLIVINSAISLS 207

Query: 184 R 185
           R
Sbjct: 208 R 208

[Close]

BLAST of CmoCh04G029020 vs. TAIR 10
Match: AT2G36100.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 172.2 bits (435), Expect = 4.0e-43
Identity = 93/189 (49.21%), Postives = 127/189 (67.20%), Query Frame = 0


Query: 4   TMSESSELKSSKTK--------PGVNRGLSILDFILRLAAIVGTLGSAIAMGTTNQTLPF 63
           T S S  +K +K K         G  RGL+I DF+LRLAAI  T+G+A  M T  +TLPF
Sbjct: 17  TKSSSHVVKDAKKKGFVAVASRGGAKRGLAIFDFLLRLAAIAVTIGAASVMYTAEETLPF 76

Query: 64  VTQFIQFRAEYNDIPMFTFFVVANAIVSGYLVLSLPFSIFHILRNRAHGTRVLLVFLDGG 123
            TQF+QF+A Y+D+P F +FV+A A+V+ YLVLSLPFSI  I+R  A   R++L+  D  
Sbjct: 77  FTQFLQFQAGYDDLPAFQYFVIAVAVVASYLVLSLPFSIVSIVRPHAVAPRLILLICDTL 136

Query: 124 MMALLTSGASAAAAIVYLAHKGNAKTNWLAVCQQFNSFCERISGSLIGSFAAIILFLVMI 183
           ++ L TS A+AAA+I YLAH GN  TNWL +CQQF  FC+ +S +++    AI+ F+V+I
Sbjct: 137 VVTLNTSAAAAAASITYLAHNGNQSTNWLPICQQFGDFCQNVSTAVVADSIAILFFIVLI 196

Query: 184 FLSGVALSR 185
            +S +AL R
Sbjct: 197 IISAIALKR 205

The following BLAST results are available for this feature:

BLAST of CmoCh04G029020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7PMY7	1.4e-64	70.27	Casparian strip membrane protein 3 OS=Vitis vinifera OX=29760 GN=VIT_14s0108g010...	[more]
B9I534	9.0e-64	66.67	Casparian strip membrane protein 6 OS=Populus trichocarpa OX=3694 GN=POPTRDRAFT_...	[more]
A2YAZ1	2.9e-62	66.48	Casparian strip membrane protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI...	[more]
Q67X40	2.9e-62	66.48	Casparian strip membrane protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=O...	[more]
P0DI44	1.9e-61	67.05	Casparian strip membrane protein 1 OS=Solanum tuberosum OX=4113 PE=2 SV=1	[more]

BLAST of CmoCh04G029020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GRF2	7.3e-93	100.00	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111456446 PE=3 SV=1	[more]
A0A6J1JTR2	8.1e-92	98.93	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111487433 PE=3 SV=1	[more]
A0A6J1BYA1	4.2e-80	85.95	CASP-like protein OS=Momordica charantia OX=3673 GN=LOC111006680 PE=3 SV=1	[more]
A0A1S3C9W9	3.5e-79	86.56	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498495 PE=3 SV=1	[more]
A0A0A0KSC5	1.3e-78	86.49	CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G636650 PE=3 SV=1	[more]

BLAST of CmoCh04G029020 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602505.1	1.5e-92	100.00	hypothetical protein SDJN03_07738, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022954075.1	1.5e-92	100.00	casparian strip membrane protein 1 [Cucurbita moschata]	[more]
KAG7033177.1	7.5e-92	99.47	hypothetical protein SDJN02_07231, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022990598.1	1.7e-91	98.93	casparian strip membrane protein 1 [Cucurbita maxima]	[more]
XP_023544467.1	3.7e-91	98.93	casparian strip membrane protein 3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh04G029020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15290.1	6.8e-59	62.37	Uncharacterised protein family (UPF0497)	[more]
AT3G11550.1	8.4e-49	56.63	Uncharacterised protein family (UPF0497)	[more]
AT5G06200.1	3.2e-48	57.83	Uncharacterised protein family (UPF0497)	[more]
AT1G14160.1	9.2e-48	52.49	Uncharacterised protein family (UPF0497)	[more]
AT2G36100.1	4.0e-43	49.21	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006459	Casparian strip membrane protein	TIGRFAM	TIGR01569	TIGR01569	coord: 29..179 e-value: 1.7E-48 score: 162.3
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 22..170 e-value: 9.3E-48 score: 161.8
None	No IPR available	PANTHER	PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	coord: 11..185
None	No IPR available	PANTHER	PTHR11615:SF329	CASPARIAN STRIP MEMBRANE PROTEIN 5	coord: 11..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G029020.1	CmoCh04G029020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007043	cell-cell junction assembly
biological_process	GO:0042545	cell wall modification
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding